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| Version 11 (modified by , 17 years ago) ( diff ) |
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Chimera Python Scripts
These Python scripts provide capabilities not available using Chimera commands. They may only work with specific Chimera versions.
- interpolate.py. Interpolate volume data set values at specific points. Tested with Chimera 1.4 daily build July 17, 2009.
- place.py. Place copies of a model at specified positions and orientations. Tested with Chimera 1.4 daily build July 10, 2009.
- fitnogui.py. Fit one map in another and print rotation/translation. Tested with Chimera 1.4 daily build May 18, 2009.
- quality.py. Set the subdivision quality. Gives smooth appearance to molecule models. Tested with Chimera 1.3.
- aniso.py. Anisotropic b-factors shown as ellipsoids for selected atoms using PDB ANISOU records. Tested with Chimera 1.4 daily build July 14, 2009 using PDB 1xy1.
- match.py. Match chain A of two open molecules and report RMSD and atom pairings to Reply Log. Tested with Chimera 1.3 using PDBs 3fx2 and 1gcn.
Attachments (99)
- quality.py (88 bytes ) - added by 17 years ago.
- match.py (540 bytes ) - added by 17 years ago.
- place.py (2.9 KB ) - added by 17 years ago.
- aniso.py (904 bytes ) - added by 17 years ago.
- interpolate.py (575 bytes ) - added by 17 years ago.
- markhidden.py (2.0 KB ) - added by 17 years ago.
- surfvert.py (1.2 KB ) - added by 17 years ago.
- pqr2chimera.py (577 bytes ) - added by 17 years ago.
- xyzmap.py (2.5 KB ) - added by 17 years ago.
- xyzsdmap.py (2.4 KB ) - added by 17 years ago.
- lightsout.py (225 bytes ) - added by 17 years ago.
- esp.py (301 bytes ) - added by 17 years ago.
- surfsilhouette.py (2.1 KB ) - added by 17 years ago.
- selLys.py (792 bytes ) - added by 17 years ago.
- disulphide.py (912 bytes ) - added by 17 years ago.
- markeruse.py (589 bytes ) - added by 16 years ago.
- closeatoms.py (936 bytes ) - added by 16 years ago.
- surfvol.py (1.1 KB ) - added by 16 years ago.
- angle.py (860 bytes ) - added by 16 years ago.
- capcolor.py (377 bytes ) - added by 16 years ago.
- square.py (471 bytes ) - added by 16 years ago.
- placeatom.py (1.6 KB ) - added by 16 years ago.
- saveunitcell.py (567 bytes ) - added by 16 years ago.
- torspace.py (2.3 KB ) - added by 16 years ago.
- edgesum.py (966 bytes ) - added by 16 years ago.
- capmask.py (5.7 KB ) - added by 16 years ago.
- camerapositions.py (838 bytes ) - added by 16 years ago.
- flatimage.py (2.8 KB ) - added by 16 years ago.
- makesurf.py (584 bytes ) - added by 15 years ago.
- placem.py (3.0 KB ) - added by 15 years ago.
- surfvalues.py (2.5 KB ) - added by 15 years ago.
- readvol.2.py (912 bytes ) - added by 15 years ago.
- readvol.py (912 bytes ) - added by 15 years ago.
- czone.py (493 bytes ) - added by 15 years ago.
- smoothMD.py (1.6 KB ) - added by 15 years ago.
- marksurface.py (563 bytes ) - added by 15 years ago.
- volumecenter.py (1.3 KB ) - added by 14 years ago.
- orient.py (1.2 KB ) - added by 14 years ago.
- vclip.py (911 bytes ) - added by 14 years ago.
- eulermove.py (730 bytes ) - added by 14 years ago.
- tilemap.py (895 bytes ) - added by 14 years ago.
- rotatoms.py (1.1 KB ) - added by 14 years ago.
- fov.py (1.3 KB ) - added by 13 years ago.
- savemaskedmaps.py (451 bytes ) - added by 13 years ago.
- distances.py (468 bytes ) - added by 13 years ago.
- compress.py (2.0 KB ) - added by 13 years ago.
- mapsum.py (2.4 KB ) - added by 13 years ago.
- RadialDensity.zip (70.4 KB ) - added by 13 years ago.
- fitsearch.py (782 bytes ) - added by 13 years ago.
- microtubule.py (3.2 KB ) - added by 13 years ago.
- colordist.py (3.4 KB ) - added by 13 years ago.
- red_area.py (1.3 KB ) - added by 12 years ago.
- filament.py (2.6 KB ) - added by 12 years ago.
- curvature.py (2.1 KB ) - added by 12 years ago.
- changeaxes.py (1.2 KB ) - added by 12 years ago.
- insightgrid.py (1.7 KB ) - added by 12 years ago.
- varbond.py (779 bytes ) - added by 12 years ago.
- blend.py (2.3 KB ) - added by 12 years ago.
- atomdist.py (535 bytes ) - added by 11 years ago.
- showoutline.py (237 bytes ) - added by 11 years ago.
- midfocal.py (376 bytes ) - added by 11 years ago.
- flat.py (691 bytes ) - added by 11 years ago.
- placeimod.py (1.5 KB ) - added by 11 years ago.
- printfit.py (441 bytes ) - added by 11 years ago.
- helixtube.py (1.6 KB ) - added by 11 years ago.
- pp.py (1.7 KB ) - added by 11 years ago.
-
dipole.py
(1.1 KB
) - added by 10 years ago.
calculate dipole moment and show dipole vector
- cube.py (921 bytes ) - added by 10 years ago.
- surfinvert.py (473 bytes ) - added by 10 years ago.
- findIncomplete.py (565 bytes ) - added by 10 years ago.
- capcalc.py (867 bytes ) - added by 10 years ago.
- maxdist.py (443 bytes ) - added by 10 years ago.
- edgeband.py (1.2 KB ) - added by 10 years ago.
- lineplot.py (2.8 KB ) - added by 10 years ago.
- surfval.py (1.1 KB ) - added by 10 years ago.
- syncregion.py (401 bytes ) - added by 10 years ago.
-
getcolors.py
(170 bytes
) - added by 10 years ago.
print modelcolor command equivalents
- triangles.py (763 bytes ) - added by 10 years ago.
- angles.py (1.8 KB ) - added by 10 years ago.
- fitnogui.py (2.5 KB ) - added by 10 years ago.
- avalnogui.py (1.2 KB ) - added by 9 years ago.
- savemarkers.py (1013 bytes ) - added by 9 years ago.
- volmin.py (445 bytes ) - added by 9 years ago.
- copymol.py (657 bytes ) - added by 9 years ago.
- radius-of-gyration-nomass.py (401 bytes ) - added by 9 years ago.
- radius-of-gyration-mass.py (421 bytes ) - added by 9 years ago.
- save.py (683 bytes ) - added by 9 years ago.
- dividelinks.py (748 bytes ) - added by 9 years ago.
- worm.py (335 bytes ) - added by 9 years ago.
- segment.py (287 bytes ) - added by 9 years ago.
- removecross.py (1.7 KB ) - added by 9 years ago.
- pblengths.py (237 bytes ) - added by 9 years ago.
- mean_distance.py (1.1 KB ) - added by 8 years ago.
- mapdiff.py (408 bytes ) - added by 8 years ago.
- pruneCoordSets.py (176 bytes ) - added by 7 years ago.
- vdock_accel.py (2.1 KB ) - added by 6 years ago.
- ylm.py (2.3 KB ) - added by 6 years ago.
- flip.py (538 bytes ) - added by 6 years ago.
- smooth_md.py (1.2 KB ) - added by 2 years ago.
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