Scripts: savemaskedmaps.py

# Save masked maps, overwriting original map files.
#
# Looks for open models with names ending in "masked" and saves those
# using the path of like named models without the "masked" suffix.
#
from chimera import openModels as om, runCommand
mlist = om.list()
for mv in mlist:
    if mv.name.endswith(' masked'):
        v = [m for m in mlist if mv.name == m.name + ' masked'][0]
        runCommand('volume %s save %s' % (mv.oslIdent(), v.data.path))