Scripts: makesurf.py

#
# Example script that creates a surface by stitching marker chains.
#
path = "/Users/goddard/test.cmm"

# Read markers from file.
from chimera import openModels
openModels.open(path)      # Unfortunately this does not return the marker set.

# Create an empty surface.
from _surface import SurfaceModel
surf = SurfaceModel()
openModels.add([surf], baseId = 5)      # Make surface have id number 5.

# Calculate surface by stitching marker chains
from VolumePath import marker_sets, surface
for mset in marker_sets():
  surface.make_marker_surface(mset.markers(), surf, caps = True)