Changes between Version 1 and Version 2 of phenix-9-11-25

Timestamp:

Sep 8, 2025, 1:50:49 PM (3 months ago)

Author:

Eric Pettersen

Comment:

--

phenix-9-11-25

@@ -1 +1 @@
 = Phenix =
 
-=== General ===
- * Reduce length of author list ("et al.") in citation widget
- * Need to add '.bat' to Windows executables' names
-
-=== Local EM Fitting ===
- * Open sharpened maps in main thread
- * Handle JSON output regardless of Phenix version
- * Note that pre-fitted structures option only available in Phenix 2.0+
-
 === Fit Ligand ===
- * "Show clashes" option
- * Got feedback from Tom T. as to why map cropping is needed if there's a search center
- * Worked on placing a ligand for specifying search center and bounds
+ * Convert "ligand lengths" to angstroms
+ * Send cropped map
+ * Make command handle pre-existing model as ligand
+ * Interactive search adjustment:
+    * Center (example ligand)
+    * Bounds (outline box)
+      * Enforce center remains within bounds
 
 = ChimeraX completed =