Phenix

Fit Ligand

• Convert "ligand lengths" to angstroms
• Send cropped map
• Make command handle pre-existing model as ligand
• Interactive search adjustment:
  • center (example ligand)
  • bounds (outline box)
    • Enforce center remains within bounds

ChimeraX completed

• Chirality command
• Made opening coordinates by default replace if 1 coordinates set, otherwise append
• Profile Grid
  • Show column number mouse is in
  • Report number of sequences matching chosen cells
• ViewDock
  • Got Maestro to work with new ViewDock
  • Improved column-control check box layout in extreme cases
  • Long description values in one column instead of two
  • Scrollable description area
  • More readable column titles
• Minimize handles NAD, etc. now
• Fixed session-combine bug with global pseudobond manager (don't clear groups)
• Scenes
  • Don't try to call restore_scene on intermediate-derived classes
  • Get pseudobonds to save/restore
  • Don't restore Model.overall_color
  • Make Structure responsible for all atomic scene data (rather than Atoms, Residues, etc.)
  • Have Scenes tool handle scene names with spaces
  • 2D labels