Changes between Version 2 and Version 3 of phenix-12-19-24

Timestamp:

Dec 18, 2024, 11:44:20 AM (10 months ago)

Author:

pett

Comment:

--

phenix-12-19-24

@@ -14 +14 @@
 
 = ChimeraX completed =
- * Added discussion of declaring dependencies on !PyPi packages to programming documentation
- * Made AddH not check for updating missing-structure pseudobonds
- * Allow H-bond and clash/contact output to be on a per-residue basis
- * Updating a structure sequence when a residue type changes wasn't accounting for gaps
- * "center" option for `open` command
  * Altlocs
    - Small revamp of altlocs tool in preparation for "show all altlocs" capability
@@ -28 +23 @@
    - Keep markers at same value position (rather than relative position) when expanding histogram range
  * Fixed bug making chains where internal residue is non-polymeric
- * Select by column identity
- * [http://www.cgl.ucsf.edu/home/meng/jclub/kvfinder.html#/ KVFinder] tool/command
+ * Find Cavities
+   - Color cavities by depth [[Image(picture.gif)]]
+   - If replacing a docked dialog, dock the replacement
+   - Don't recolor surface if colored externally
+ * Handle problem where labels get deleted before structure is opened [missing structure + morph]
+ * Set Qt's default locale to C, so that numeric validators produce values acceptable to float()
+ * Profile Grids "alpha" release
+ * "session-start" view created when session restored
+ * Coordinate set slider responds to coordinate set addition/deletion