Changes between Version 1 and Version 2 of Feb2015MolGraphics

Timestamp:

Jan 8, 2015, 5:05:01 PM (11 years ago)

Author:

Tom Goddard

Comment:

--

Feb2015MolGraphics

@@ -17 +17 @@
 {{{
  display (true/false)
-
  color
 }}}
@@ -24 +23 @@
 {{{
  display (true/false)
-
- drawMode (wire, stick, spring)
+ drawMode (wire, stick)
  radius
-
  color
  halfbond (color each half of bond to match near atom)
@@ -34 +31 @@
 == Residue ==
 {{{
- ribbonDisplay (true/False)
- ribbonDrawMode (2D, edged, round, custom)
- ribbonColor
- ribbonXSection (for custom cross-sections)
- ribbonStyle (width and thickness scale factors, e.g. for worms)
 }}}
 
@@ -48 +40 @@
 == Molecule, also inherits from Model ==
 {{{
- ballScale (float, scale ball size in ball and stick)
- stickScale (float, scale factor for bond radius)
-
- ribbonType (bspline, cardinal)
- ribbonStiffness (float, interpolation parameter)
- ribbonSmoothing (strand | coil mask, to smooth specific secondary structures)
- ribbonInsideColor (for inside/outside dual coloring)
- ribbonHidesMainChain (true/false)
- residueLabelPositionMode (centroid, backbone, primary-atom)
 }}}
 
@@ -62 +45 @@
 {{{
  display (true/false)
-
  color
 }}}
@@ -68 +50 @@
 == !PseudoBondGroup (global bond settings like Molecule) ==
 {{{
- stickScale (float, scale factor for bond radius)
 }}}
 
-== Changes ==
+== Notes ==
 
-7. Should color objects be immutable?  Chimera 1 allows redefining a color and having all graphics objects using that color automatically update.  Complex code.
+1. No ribbons.
 
-8. How to handle different materials in addition to colors?
+2. No wire and dot mode.
 
-9. Keep color hierarchy (model->atom, model->ribbon)?  What about surface colors?
+3. Should color objects be immutable?  Chimera 1 allows redefining a color and having all graphics objects using that color automatically update.  Complex code.
+
+4. How to handle different materials in addition to colors?
+
+5. Keep color hierarchy (model->atom, model->ribbon)?  What about surface colors?