Attendees

• Eric, TomG, Greg

Agenda

• Action items
• ChimeraX
  • Remove or replace splash screen?
  • ChimeraX release date, and what needs to be done.
  • Toolshed tickets
  • Should we remove the HTML tool tutorial and promote only Qt GUIs?
  • GitHub found 7 vulnerabilities on RBVI/ChimeraX's default branch (6 high, 1 moderate). To find out more, visit: remote: ​https://github.com/RBVI/ChimeraX/security/dependabot
  • Have "make install" actually install things
• Chimera

Discussion

• ChimeraX splash screen to be removed, decided in group meeting.

• Greg described slow mmCIF writing issues
  • especially slow for writing just selected atoms
  • has optimized some of mmCIF writing in past week using Cython
  • will optimize one more part for 10% speedup

• Color key in and tested some by Eric and Elaine

• Looked at R01 progress report items Tom Ferrin asked to prioritize for ChimeraX 1.2 release
  • all too big to implement in a month
  • adding ions unlikely ever to be implemented, needs ancient AmberTools

• PyQt 5.15.3 and 5.15.4
  • Do these include Qt 5.15.3 which requires commercial Qt license?
  • Greg tested with PyPi PyQt 5.15.4 install and it includes Qt 5.15.2.
  • Won't update PyQt for ChimeraX 1.2 release

• Release plan is to have all ChimeraX 1.2 code changes in by next meeting in two weeks
  • Version 1.2 will be called a release candidate initially and promoted to official release if stable for some weeks
  • If fixes to 1.2 release candidate needed, will put out 1.2.1

Action Items

• Add check frequency menu to Toolshed updates tool - Greg
• Check that all Toolshed bundles that install in 1.2 actually start -- add core<1.2 dependency to those that fail - Greg
• Add to bundle developer example explanation of need for ChimeraX-UI dependency - Eric was already there
• Make ticket for bond orders - Eric #4270