Changes between Version 1 and Version 2 of 2023-6-1

Timestamp:

Jun 1, 2023, 12:24:48 PM (2 years ago)

Author:

Tom Goddard

Comment:

--

2023-6-1

@@ -7 +7 @@
 = Agenda =
 
-* Eric presenting
+* Eric presenting, [wiki:phenix-6-1-23 Slides]
 * Discussion of ChimeraX manuscript for Protein Science, due July 31, 2023
 * NIAID new contract
@@ -16 +16 @@
 = Discussion Notes =
 
+* Plato server operating system update
+  - Eric needs to update backup scripts from Python 2 to 3.
+  - A ChimeraX web update script is still broken, probably python 2
+  - Tom Ferrin and Greg will talk about getting Topo 2 web pages online.
+
+* Phenix R24 fit_loops command
+  - Eric implementing ChimeraX command for Phenix fit_loops developed by Tom Terwilliger.
+  - Takes 3 minutes to run typical example with 1 core.
+  - Should be able to run with multiple cores but option is not working.
+  - Eric is sending other bugs to Phenix team.
+  - Plan is to make a gui interface after command is working.
+  - GUI will have many fewer than the 50 options of the Phenix command.
+
+* Phenix R24 emplace_local command
+  - Randy Read has enhanced his fitting command emplace_local so it can work with a single map instead of two half maps.  Less reliable, requires resolution.
+  - Eric is adapting ChimeraX command and GUI to handle this case.
+
+* ChimeraX improvements
+  - Eric described several ChimeraX improvements in his [wiki:phenix-6-1-23 slides].
+
 
 = Action Items =