Changes between Version 2 and Version 3 of 2021-3-4


Ignore:
Timestamp:
Mar 4, 2021, 4:29:12 PM (5 years ago)
Author:
Tom Goddard
Comment:

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  • 2021-3-4

    v2 v3  
    1212* Implications if Apple drops OpenGL sooner rather than latter
    1313* New hire job [https://docs.google.com/document/d/1n-b7aSL5UmEbQRYno3GXO2nyIJDOtaq4LntqhGSctrA/edit description]
    14 * SPOKE stuff
    15  - Scooter & Elaine need to be added to NSF grant
    16  - ~2 yrs more on that grant
     14* SPOKE
     15
    1716
    1817= Discussion =
    1918
     19
     20* SPOKE
     21  - new hire, full-time programmer
     22  - Discussion of SPOKE git issues mostly describing symptoms without solutions.
     23  - Scooter doing various fixes this week, out next week
     24
     25* NTT contract
     26  - Scooter put in NTT monthly report
     27
     28* CZI essential open source tools RFA.
     29  - Scooter proposes web services
     30
     31* New hire next steps
     32  - Scooter wrote up job description.
     33  - TomF says to open job requisition with HR
     34
     35* Greg may have more time for ChimeraX
     36  - What tasks should he work on?
     37
     38* ChimeraX release
     39  - Main need is for R01 renewal.
     40  - Scooter suggests want strongest release for R01 renewal -- so can wait if needed to add important new features.
     41  - Eric working on color key gui, available next week
     42  - Greg wants soon release to get fixes to Toolshed bugs out
     43  - Scooter suggests early April release date
     44
     45* R01 renewal
     46  - internal deadline, June 5, one month before official July 5 submission.
     47  - TomF: What will content be?  Focus of R01 on innovation.
     48  - TomF will send last R01 research plan, also reviewer comments especially weaknesses.
     49  - Devote half of coming group meetings to discussing R01 research plan.
     50  - Review of last R01 mentioned Rossetta
     51  - Integrate with deep learning structure prediction e.g. from CASP
     52  - Discussion of looking at AlphaFold 2 structure prediction.
     53    - https://phys.org/news/2020-11-ai-solution-year-old-protein.html
     54    - https://www.blopig.com/blog/2020/12/casp14-what-google-deepminds-alphafold-2-really-achieved-and-what-it-means-for-protein-folding-biology-and-bioinformatics/
     55  - Read R01 aims and summary from last time before next meeting to discuss.
     56  - New R01 will require a progress report section
     57  - Interaction of 3D graphics with 2D liked by reviewers.
     58    - RNArtist ChimeraX tool example: https://github.com/fjossinet/RNArtist and example use https://twitter.com/rnartist_app/status/1366712097879568385
     59
    2060= Action Items =
    2161
    22 * ~~ChimeraX programming tutorial needs to change PyQt5 to Qt shim. TomG
     62* Read last R01 specific aims and reviewer comments for next group meeting,  Everyone
    2363* Buy Mac Mini with Apple Silicon and KVM switch, TomF
    2464* Figure out what additional plato directories need backup.  Scooter