Attendees
- Eric, Greg, TomG, Elaine, Scooter, TomF
Agenda
- Action items
- Chimera
- ChimeraX
- Funding
- NETE - plan for next contract
- CZI Visual Proteomics Imaging RFA, due Feb 21, 2021
- R24 plan, NIAID or NIGMS
- U24 funding, this is what Cytoscape applied for.
- SPOKE
Discussion
- Chimera
- Eric removed AutoDock web service options from gui in daily build
- Eric fixed RMF library linking problem in daily build
- ChimeraX
- TomG looking at if qt shim can handle PyQt5/PySide2 and PyQt6/PySide6 in future to avoid changing ChimeraX major version when switch to Qt 6 happens.
- Discussed ChimeraX wheel for standalone use by NIH 3D pipeline
- Currently just an experiment
- NIH 3D seems to be developing slowly, not using the scripts Eric made for them yet
- NETE
- Scooter made initial Task Order google doc to get Darrell Hurt's feedback
- Create task order for submission to NTT Data after their Feb 15 contract renewal
- Task order will offer several items, Darrell will need to choose a few
- HuBMAP, VR, segmentation, DICOM
- TomG suggests it is best if we avoid DICOM where we don't have much expertise
- R01
- Application deadline to renew(?) R01 is July 5, 2021
- What high res cryoEM capabilities to include?
- Will need to figure out how to distinguish from other cryoEM work
- Tristan's ISOLDE for refining structures
- Phenix R24, model validation
- NTT Data contract segmentation user interfaces
- Can Tristan be partly funded on our R01?
- Tom Ferrin says double overhead since he would be subcontract
- Tristan says he may be funded on Paul Adam's R01 to be submitted this year
- Would be good to have more Toolshed developers for R01
- Toolshed hard for developers to learn
- How can we use standard python module distribution systems like Conda and PyPi?
- U24
- Scooter looked at NIAID U24 program announcements, none appropriate for us
- One NIAID PAR on biomodeling databases (?) might be possible with the right collaborator
Action Items
Remove AutoDock Vina, APBS, and PDB2PQR web interfaces from Chimera daily build. EricFix Chimera RMF linking problem, limit to 1 day effort. EricCreate backup shell script that is run from cron. Eric- Evaluate if qt shim handling PyQt5 and PySide2, PyQt6, PySide6 is feasible. TomG
- Figure out what additional plato directories need backup. Scooter
- Try to setup 2-factor authentication for vpn, Scooter
- Test new vpn on linux and document. Scooter
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Last modified on Jan 14, 2021, 3:22:48 PM
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