wiki:2021-1-14

Attendees

  • Eric, Greg, TomG, Elaine, Scooter, TomF

Agenda

  • Action items
  • Chimera
  • ChimeraX
  • Funding
    • NETE - plan for next contract
    • CZI Visual Proteomics Imaging RFA, due Feb 21, 2021
    • R24 plan, NIAID or NIGMS
    • U24 funding, this is what Cytoscape applied for.
  • SPOKE

Discussion

  • Chimera
    • Eric removed AutoDock web service options from gui in daily build
    • Eric fixed RMF library linking problem in daily build
  • ChimeraX
    • TomG looking at if qt shim can handle PyQt5/PySide2 and PyQt6/PySide6 in future to avoid changing ChimeraX major version when switch to Qt 6 happens.
    • Discussed ChimeraX wheel for standalone use by NIH 3D pipeline
      • Currently just an experiment
      • NIH 3D seems to be developing slowly, not using the scripts Eric made for them yet
  • NETE
    • Scooter made initial Task Order google doc to get Darrell Hurt's feedback
    • Create task order for submission to NTT Data after their Feb 15 contract renewal
    • Task order will offer several items, Darrell will need to choose a few
      • HuBMAP, VR, segmentation, DICOM
      • TomG suggests it is best if we avoid DICOM where we don't have much expertise
  • R01
    • Application deadline to renew(?) R01 is July 5, 2021
    • What high res cryoEM capabilities to include?
    • Will need to figure out how to distinguish from other cryoEM work
      • Tristan's ISOLDE for refining structures
      • Phenix R24, model validation
      • NTT Data contract segmentation user interfaces
    • Can Tristan be partly funded on our R01?
      • Tom Ferrin says double overhead since he would be subcontract
      • Tristan says he may be funded on Paul Adam's R01 to be submitted this year
    • Would be good to have more Toolshed developers for R01
      • Toolshed hard for developers to learn
      • How can we use standard python module distribution systems like Conda and PyPi?
  • U24
    • Scooter looked at NIAID U24 program announcements, none appropriate for us
    • One NIAID PAR on biomodeling databases (?) might be possible with the right collaborator

Action Items

  • Remove AutoDock Vina, APBS, and PDB2PQR web interfaces from Chimera daily build. Eric
  • Fix Chimera RMF linking problem, limit to 1 day effort. Eric
  • Create backup shell script that is run from cron. Eric
  • Evaluate if qt shim handling PyQt5 and PySide2, PyQt6, PySide6 is feasible. TomG
  • Figure out what additional plato directories need backup. Scooter
  • Try to setup 2-factor authentication for vpn, Scooter
  • Test new vpn on linux and document. Scooter
Last modified 5 years ago Last modified on Jan 14, 2021, 3:22:48 PM
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