Changes between Version 2 and Version 3 of 2018-10-22


Ignore:
Timestamp:
Oct 22, 2018, 1:18:42 PM (7 years ago)
Author:
Conrad Huang
Comment:

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  • 2018-10-22

    v2 v3  
    1717= Discussion =
    1818* Chimera 1.13.1.
     19  * So far so good.  Let it simmer a while more.
    1920  * Tristan's example from CASP entry with all zero coordinates in a residue causes Chimera to "exit abnormally"
     21    - Ignore for now
    2022* ChimeraX
    2123  * Changing log behavior
    22     * Greg added context menu to switch between help and execute
    23     * Eric added optional display of typed and generated commands
    2424    * Reorganize "save" command:
    25       - Remove "metadata" and "verbose" from main command
    26       - Move "savePath" and "forDemo" into a "log save" subcommand.  ("forDemo" or "executableLinks" does not change user preference.)
    27       - Move "warning" and "error" options into "log setting" (non-sticky) subcommand and add in Settings.
     25      - ~~Remove "metadata" and "verbose" from main command
     26      - ~~Move "savePath" and "forDemo" into a "log save" subcommand.  ("forDemo" or "executableLinks" does not change user preference.)
     27      - ~~Move "warning" and "error" options into "log setting" (non-sticky) subcommand and add in Settings.
     28    * Try out new syntax and discuss again next week
     29  * Wildcard matching
     30    * Use file globbing syntax for atomspec wildcards, replacing the '=' in Chimera 1 with '*' since '*' should no longer appear in atom names
     31    * For attribute testing, use four operators: '=' and '~'.  '=' is a string match.  '==' is a case-sensitive string match.  '~' is a glob match.  '!~~' is a case-sensitive glob match
     32  * Installers for CentOS/Redhat
     33    - Up on web site.  Tristan may be testing it soon.
    2834  * Putting RBVI bundles on toolshed
    2935    - Conrad showed toolshed rbvi bundle release page
    3036    - Scooter says Cytoscape app store revamped recently, ChimeraX should use new Django code.
    31   * Installers for CentOS/Redhat
    32     - On hold until Chimera Tk issue resolved.
     37    - Fix "New version" section of candidate bundles
     38    - Add "make sync" to daily build
     39    - Push to production site
    3340  * Documentation strategy
    3441    - Current layout below
    3542    - What layout do we want?
     43    - Use virtual overlay, with make target for resynchronizing symlinks
    3644
    3745||docs||user||commands||close.html||
     
    4351
    4452= Action Items =
     53* Greg will implement documentation virtual overlay symlink target
     54* Implement wildcard matching.  Eric will create a ticket for Conrad.
     55* Send announcement on Chimera mailing lists regarding Mojave fix in daily and candidate builds (Elaine and Eric)
    4556* Conrad will create ticket listing stable APIs