Attendees

• Eric, Greg, TomG, Conrad, TomF, Elaine

Agenda

• Action items
• Chimera
  • 1.13.1 release
    • catastrophic failure on protein residue with all zero coordinates
• ChimeraX
  • Wildcard/regex/case matching in atomspec (Eric)
  • Installers for CentOS/Redhat
  • RBVI bundles on toolshed
  • Documentation strategy
  • Change build process to trim down list of bundles in standard release while still testing toolshed-only bundles

Discussion

• Chimera 1.13.1.
  • Tristan's example from CASP entry with all zero coordinates in a residue causes Chimera to "exit abnormally"
• ChimeraX
  • Changing log behavior
    • Greg added context menu to switch between help and execute
    • Eric added optional display of typed and generated commands
    • Reorganize "save" command:
      • Remove "metadata" and "verbose" from main command
      • Move "savePath" and "forDemo" into a "log save" subcommand. ("forDemo" or "executableLinks" does not change user preference.)
      • Move "warning" and "error" options into "log setting" (non-sticky) subcommand and add in Settings.
  • Putting RBVI bundles on toolshed
    • Conrad showed toolshed rbvi bundle release page
    • Scooter says Cytoscape app store revamped recently, ChimeraX should use new Django code.
  • Installers for CentOS/Redhat
    • On hold until Chimera Tk issue resolved.
  • Documentation strategy
    • Current layout below
    • What layout do we want?

docs	user	commands	close.html
		tools	filehistory.html
		formats	bild.html
src	bundles	bundle_name	docs	user	commands	my_command.html
					tool	my_tool.html
					formats	my_format.html

Action Items

• Conrad will create ticket listing stable APIs