Changes between Initial Version and Version 1 of 2018-03-15


Ignore:
Timestamp:
Mar 15, 2018, 3:17:21 PM (8 years ago)
Author:
Conrad Huang
Comment:

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  • 2018-03-15

    v1 v1  
     1= Attendees =
     2
     3* Elaine, Greg, Eric, TomG, Conrad
     4
     5= Agenda =
     6* Cython and tinyarray
     7* Documentation and tutorial status
     8* mmCIF output
     9* Import hook
     10* Review [https://www.rbvi.ucsf.edu/trac/ChimeraX/query?status=feedback&status=reopened&status=assigned&status=new&status=accepted&group=status&milestone=0.6 milestone priorities]
     11*
     12* Wildcard/regex/case matching in commands
     13* What to show in log when opening model?  Citation? Title? ticket #1030
     14
     15= Discussion =
     16* Cython and tinyarray
     17  - See New Results section from ​[wiki:2018-01-25 previous meeting]
     18  - Phase 1: implement Cython change (done)
     19  - Phase 2: drop in tinyarray for singletons (colors, transformations, coordinates) (done)
     20    - Run for a while to see what breaks
     21* mmCIF output
     22  - What tables are we outputting?
     23    - Greg will write a technical document describing what is being output
     24    - Elaine will reference that from user documentation
     25  - What does current output work with?
     26    - Works: PyMOL, Rasmol, PHENIX (tested by Tristan), COOT (does not show SS anyway), CCP4mg (computes its own SS), JSMol (only shows secondary structure with pdbx_ tables)
     27    - RCSB validation?
     28* Documentation and tutorial status
     29  - class_munger.py will munge class names to hide submodules
     30  - "Supported API" on first docstring line works
     31  - For docstrings without API status, insert "Experimental API subject to change."
     32  - Tutorial sphinx links all work.
     33  - Need to make sure all used methods and properties are documented.
     34* Import hook (done)
     35  - {{{from chimerax.ui import something}}}
     36  - import-hook docs are similar in complexity with metaclasses
     37* Review milestone priorities
     38
     39= Action Items =
     40* Greg will write a technical document describing what is being output for mmCIF
     41* Greg will feed ChimeraX mmCIF output into RCSB validator
     42* Everyone update milestones that should be punted to 0.7
     43* Conrad will write bundle code tutorial
     44* Conrad will continue working on ribbon tickets