Attendees

• Elaine, Greg, Eric, TomG, Conrad

Agenda

• Cython and tinyarray
• Documentation and tutorial status
• mmCIF output
• Import hook
• Review ​milestone priorities
• Wildcard/regex/case matching in commands
• What to show in log when opening model? Citation? Title? ticket #1030

Discussion

• Cython and tinyarray
  • See New Results section from ​previous meeting
  • Phase 1: implement Cython change (done)
  • Phase 2: drop in tinyarray for singletons (colors, transformations, coordinates) (done)
    • Run for a while to see what breaks
• mmCIF output
  • What tables are we outputting?
    • Greg will write a technical document describing what is being output
    • Elaine will reference that from user documentation
  • What does current output work with?
    • Works: PyMOL, Rasmol, PHENIX (tested by Tristan), COOT (does not show SS anyway), CCP4mg (computes its own SS), JSMol (only shows secondary structure with pdbx_ tables)
    • RCSB validation?
• Documentation and tutorial status
  • class_munger.py will munge class names to hide submodules
  • "Supported API" on first docstring line works
  • For docstrings without API status, insert "Experimental API subject to change."
  • Tutorial sphinx links all work.
  • Need to make sure all used methods and properties are documented.
• Import hook (done)
  • from chimerax.ui import something
  • import-hook docs are similar in complexity with metaclasses
• Review milestone priorities

Action Items

• Greg will write a technical document describing what is being output for mmCIF
• Greg will feed ChimeraX mmCIF output into RCSB validator
• Everyone update milestones that should be punted to 0.7
• Conrad will write bundle code tutorial
• Conrad will continue working on ribbon tickets