Changes between Version 2 and Version 3 of 2016-06-16

Timestamp:

Aug 22, 2016, 1:29:41 PM (9 years ago)

Author:

Conrad Huang

Comment:

--

2016-06-16

@@ -29 +29 @@
     - Build commercial wheel using custom Qt
   * Next steps for ChimeraX
-    - Site visit demos
+    - Site visit demo scenarios
      * "Scenarios" seem to work well
-     * IHM nuclear pore data?
+     * '''IHM nuclear pore data'''
      * CRISPR (EM, multiple contact map, etc)?
      * Cell motility?
@@ -38 +38 @@
      * Graham's new stuff?
      * May depend on committee members
-    - Site visit features
-     * MAV
+    - Things that we really want to show
+     * '''3A cryo-EM''' (residue-fit viewer, connection to 2D)
+     * '''New lighting models'''
+     * Cytoscape interface
+       * REST interface
+     * Toolshed
+     * '''New UI'''
+       * HTML help and log
+       * Quick start guide
+     * Ribbons with secondary structure smoothing
+     * '''Large data sets (open/display)'''
+     * '''mmCIF support (PDB/IHM)'''
+     * 3D-2D links to fancy plots (one of...)
+       * ''chain contact graph''
+       * hierarchy explorer
+       * cross-link distribution histograms
+       * domains from web service
+     * Web services (one of...)
+       * Domains (most striking) with 2D diagram/graph
+       * Blastpdb
+       * PDB2PQR/APBS
+     * IHM mmCIF support
+       * Hierarchy explorer
+       * Low-res representations (beads)
+       * Cross link viewing
+    - Things we like to show (if available)
      * String database
      * Hydrogen bonds and contacts
-     * Fancy interactive plots
-     * REST interface
+     * MAV/conservation/contacts
+       * Multiple sequence alignment
+       * Homology modeling services
+     * Link to high-performance web viewing
+     * '''MLP'''
+     * '''Light microscopy'''
      * Molprobity
-     * IHM mmCIF support
-     * Toolshed
+     * Virtual reality interface
     - Release features