Changes between Initial Version and Version 1 of 2016-02-25


Ignore:
Timestamp:
Feb 25, 2016, 3:20:07 PM (10 years ago)
Author:
Conrad Huang
Comment:

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  • 2016-02-25

    v1 v1  
     1= Attendees =
     2
     3  Elaine, Eric, Greg, TomF, TomG, Conrad, Scooter
     4
     5= Agenda =
     6  * Review action items from last meeting
     7  * Symmetry web service - need documented API
     8  * Discuss 1.11 release
     9  * mmCIF support effort, Phenix and COOT
     10  * New session restore API
     11
     12= Discussion =
     13  * Symmetry web service - need documented API
     14   * Waiting on Andreas for documentation
     15  * mmCIF support effort, Phenix and COOT
     16   * PDB asks for large files in mmCIF file using Phenix or CCP4.  mmCIF from Phenix is first generated and then post-processed into acceptable submission form.  Get Oliver to run the Phenix standalone program?  (TomG)  Also ask about CCP4 and RefMac mmCIF output.
     17   * Post-processed mmCIF output from Phenix (courtesy Oliver) opens in ChimeraX.  Uses separate data sections for residue templates.  ChimeraX currently scans but does not use the residue templates in the file.  The added sequence table made ChimeraX work properly.  Oliver had to supply a sequence file for the Phenix post-processor.
     18
     19= Outstanding Action Items =
     20  * Friends and Family bugs outstanding
     21   * Ribbon flips too often (Conrad)
     22    * Will try out "no orientation atom" method
     23   * Stretch goals
     24    * Side view elements displays but need to make interactive (Greg)
     25    * Finish mmCIF NMR structure support, need to copy secondary structure data to all models (Greg)
     26    * Figure out and fix Mac OS X runtime linking bug (TomG/Greg/Conrad)
     27    * Check executables and dynamic libraries to make sure they only reference internal or standard libraries (Greg)
     28  * ~~Chimera 1.11 release:
     29   * ~~Build with Tk 8.6.5- in daily build ([https://plato.cgl.ucsf.edu/trac/chimera/ticket/14424 ticket 14424])
     30     * ~~Mac - balloons not working quite right
     31     * Windows - needs to build on cazaril
     32     * ~~Linux - need to be tested
     33   * Need to run test suite on all platforms and visually inspect display to see if Tk 8.6.5- is working properly
     34  * Chimera home page is complete for now
     35   * ~~URL in installer works
     36   * ~~Need to make symlink in public tree to docs so that "preview" URLs do not appear in public pages (Scooter, Elaine)
     37   * ~~Make sure preview.rbvi.ucsf.edu/chimerax works
     38   * Need to take out preview.rbvi.ucsf.edu from links
     39  * ~~Send out Chimera stereo announcement to chimera-users (Elaine)
     40  * Need proposal for new restore API (ChimeraX team, TomG lead) to simplify writing session restore code for developers
     41  * TomG is going to Phenix meeting
     42   * TomG will talk to other developers at Phenix meeting regarding whether entity_poly_seq is optional.
     43   * Greg will provide a list of mmCIF deficiencies for TomG to take to the meeting.