![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Last modified 2 years ago
#9926 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff85e9b3640 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-10-06 17:14:37.00 +0200","app_version":"1.6.1","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"1.6.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 13.4.1 (22F770820d)","roots_installed":0,"name":"ChimeraX","incident_id":"DF489EEA-C095-4597-AF51-E7967E708807"}
{
"uptime" : 190000,
"procRole" : "Background",
"version" : 2,
"userID" : 7336,
"deployVersion" : 210,
"modelCode" : "MacBookPro15,2",
"coalitionID" : 541,
"osVersion" : {
"train" : "macOS 13.4.1",
"build" : "22F770820d",
"releaseType" : "User"
},
"captureTime" : "2023-10-06 17:14:20.5717 +0200",
"incident" : "DF489EEA-C095-4597-AF51-E7967E708807",
"pid" : 44652,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-10-02 16:40:10.7793 +0200",
"procStartAbsTime" : 22102791547119,
"procExitAbsTime" : 191436225626022,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"1545732F-3ECF-5423-8838-9536F50DE789","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "E8834526-84A6-79EE-EAB6-12A98E7DF4C1",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 9630,
"bridgeVersion" : {"build":"20P5060","train":"7.5"},
"sleepWakeUUID" : "77BF73BC-92E2-4749-B3A9-D50ED5A4C828",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 140737488211944\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7ffffffdd000-7ffffffde000 [ 4K] r-x\/r-x SM=SHM ",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"ktriageinfo" : "VM - (arg = 0x0) Fault was interrupted\nVM - (arg = 0x0) Fault was interrupted\n",
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 140737488211944\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7ffffffdd000-7ffffffde000 [ 4K] r-x\/r-x SM=SHM ",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open
> /Users/mbell/sshfs/c0140_4_MotionCor2/Chimera_projects/Rhom_fitting/Rhom_MaskMaking/RH_TrimmedModelFitting_and_MaskSelection.cxs
Opened RHom Model.pdb map 3 as #4, grid size 51,73,158, pixel 1, shown at
level 0.115, step 1, values float32
Opened Rhom_Flagella_Map_2RingMasked.mrc as #6, grid size 200,201,275, pixel
0.94,0.94,0.94, shown at level 0.024, step 1, values float32
Log from Thu Aug 10 13:03:26 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open
> /Users/mbell/sshfs/c0140_4_MotionCor2/Chimera_projects/Rhom_fitting/Rhom_MaskMaking/RH_TrimmedModelFitting_and_MaskSelection.cxs
Opened RHom Model.pdb map 3 as #4, grid size 51,73,158, pixel 1, shown at
level 0.115, step 1, values float32
Opened Rhom_Flagella_Map_2RingMasked.mrc as #6, grid size 200,201,275, pixel
0.94,0.94,0.94, shown at level 0.024, step 1, values float32
Log from Wed Aug 2 16:13:43 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_Modelangelo_Structure.cxs"
Opened Rhom_single_Map_3.1A.mrc as #3, grid size 62,90,171, pixel
0.94,0.94,0.94, shown at level 0.0155, step 1, values float32
Log from Tue Jul 4 11:16:35 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/mbell/sshfs/c0140_4_MotionCor2/RhFlaB_Modelangelo_1/gnn_output_round_1/output.cif
Summary of feedback from opening
/Users/mbell/sshfs/c0140_4_MotionCor2/RhFlaB_Modelangelo_1/gnn_output_round_1/output.cif
---
warnings | Missing entity information. Treating each chain as a separate
entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for output.cif #1
---
Chain | Description
0 | No description available
1 AS AZ d m | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
7 | No description available
8 | No description available
9 DU t | No description available
A | No description available
A0 AG Ai Au B4 BI CA Ex | No description available
A1 | No description available
A3 Ao Ax BU Dk Dp E4 Y b | No description available
A4 | No description available
A6 | No description available
A7 | No description available
A8 AE | No description available
AA | No description available
AB | No description available
AC | No description available
AD | No description available
AF | No description available
AH | No description available
AJ | No description available
AK DR | No description available
AL Aj An | No description available
AM | No description available
AN | No description available
AP | No description available
AQ | No description available
AR | No description available
AT | No description available
AU | No description available
AV DB DD | No description available
AW | No description available
Ac | No description available
Ad | No description available
Af Lf | No description available
Ag | No description available
Ah | No description available
Ak | No description available
Al | No description available
Aq | No description available
At JO | No description available
Aw | No description available
Ay | No description available
B | No description available
B0 | No description available
B3 | No description available
B8 z | No description available
B9 Cb | No description available
BA l | No description available
BE | No description available
BK Dt | No description available
BL Dy | No description available
BN | No description available
BO | No description available
BP | No description available
BY | No description available
Ba | No description available
Bb Bx CD | No description available
Bc | No description available
Bj Bl EW Ep | No description available
Bo | No description available
Bs | No description available
Bt | No description available
Bu | No description available
Bv | No description available
Bz | No description available
C | No description available
C7 | No description available
C8 | No description available
CB x | No description available
CH CS CU | No description available
CI | No description available
CJ | No description available
CV | No description available
CY | No description available
CZ | No description available
Cc | No description available
Ce | No description available
Cf Cl EI | No description available
Cg | No description available
Ci | No description available
D | No description available
D2 | No description available
D4 | No description available
DK V | No description available
DP | No description available
DV | No description available
Db | No description available
De | No description available
Dj | No description available
Dv Dz | No description available
E | No description available
EG h | No description available
EY | No description available
F | No description available
FW | No description available
FZ | No description available
G | No description available
G0 | No description available
G1 | No description available
G2 | No description available
G3 | No description available
G4 | No description available
G5 | No description available
G6 | No description available
G7 | No description available
G8 | No description available
G9 | No description available
GQ | No description available
GU | No description available
GV | No description available
GW | No description available
GX | No description available
GY | No description available
GZ | No description available
Ga | No description available
Gb | No description available
Gc | No description available
Gd | No description available
Ge | No description available
Gf | No description available
Gg | No description available
Gh | No description available
Gi | No description available
Gj | No description available
Gk | No description available
Gl | No description available
Gm | No description available
Gn | No description available
Go | No description available
Gp | No description available
Gq | No description available
Gr | No description available
Gs | No description available
Gt | No description available
Gu | No description available
Gv | No description available
Gw | No description available
Gx | No description available
Gy | No description available
Gz | No description available
H | No description available
H0 | No description available
H1 | No description available
H2 | No description available
H3 | No description available
H4 | No description available
H5 | No description available
H6 | No description available
H7 | No description available
H8 | No description available
H9 | No description available
HA | No description available
HB | No description available
HC | No description available
HD | No description available
HE | No description available
HF | No description available
HG | No description available
HH | No description available
HI | No description available
HJ | No description available
HK | No description available
HL | No description available
HM | No description available
HN | No description available
HO | No description available
HP | No description available
HQ | No description available
HR | No description available
HS | No description available
HT | No description available
HU | No description available
HV | No description available
HW | No description available
HX | No description available
HY | No description available
HZ | No description available
Ha | No description available
Hb | No description available
Hc | No description available
Hd | No description available
He | No description available
Hf | No description available
Hg | No description available
Hh | No description available
Hi | No description available
Hj | No description available
Hk | No description available
Hl | No description available
Hm | No description available
Hn | No description available
Ho | No description available
Hp | No description available
Hq | No description available
Hr | No description available
Hs | No description available
Ht | No description available
Hu | No description available
Hv | No description available
Hw | No description available
Hx | No description available
Hy | No description available
Hz | No description available
I | No description available
I0 | No description available
I1 | No description available
I2 | No description available
I3 | No description available
I4 | No description available
I5 | No description available
I6 | No description available
I7 | No description available
I8 | No description available
I9 | No description available
IA | No description available
IB | No description available
IC | No description available
ID | No description available
IE | No description available
IF | No description available
IG | No description available
IH | No description available
II | No description available
IJ | No description available
IK | No description available
IL | No description available
IM | No description available
IN | No description available
IO | No description available
IP | No description available
IQ | No description available
IR | No description available
IS | No description available
IT | No description available
IU | No description available
IV | No description available
IW | No description available
IX | No description available
IY | No description available
IZ | No description available
Ia | No description available
Ib | No description available
Ic | No description available
Id | No description available
Ie | No description available
If | No description available
Ig | No description available
Ih | No description available
Ii | No description available
Ij | No description available
Ik | No description available
Il | No description available
Im | No description available
In | No description available
Io | No description available
Ip | No description available
Iq | No description available
Ir | No description available
Is | No description available
It | No description available
Iu | No description available
Iv | No description available
Iw | No description available
Ix | No description available
Iy | No description available
Iz | No description available
J | No description available
J0 | No description available
J1 | No description available
J2 | No description available
J3 | No description available
J4 | No description available
J5 | No description available
J6 | No description available
J7 | No description available
J8 | No description available
J9 | No description available
JA | No description available
JB | No description available
JC | No description available
JD | No description available
JE | No description available
JF | No description available
JG | No description available
JH | No description available
JI | No description available
JJ | No description available
JK | No description available
JL | No description available
JM | No description available
JN | No description available
JP | No description available
JQ | No description available
JR | No description available
JS | No description available
JT | No description available
JU | No description available
JV | No description available
JW | No description available
JX | No description available
JY | No description available
JZ | No description available
Ja | No description available
Jb | No description available
Jc | No description available
Jd | No description available
Je | No description available
Jf | No description available
Jg | No description available
Jh | No description available
Ji | No description available
Jj | No description available
Jk | No description available
Jl | No description available
Jm | No description available
Jn | No description available
Jo | No description available
Jp | No description available
Jq | No description available
Jr | No description available
Js | No description available
Jt | No description available
Ju | No description available
Jv | No description available
Jw | No description available
Jx | No description available
Jy | No description available
Jz | No description available
K | No description available
K0 | No description available
K1 | No description available
K2 | No description available
K3 | No description available
K4 | No description available
K5 | No description available
K6 | No description available
K7 | No description available
K8 | No description available
K9 | No description available
KA | No description available
KB | No description available
KC | No description available
KD | No description available
KE | No description available
KF | No description available
KG | No description available
KH | No description available
KI | No description available
KJ | No description available
KK | No description available
KL | No description available
KM | No description available
KN | No description available
KO | No description available
KP | No description available
KQ | No description available
KR | No description available
KS | No description available
KT | No description available
KU | No description available
KV | No description available
KW | No description available
KX | No description available
KY | No description available
KZ | No description available
Ka | No description available
Kb | No description available
Kc | No description available
Kd | No description available
Ke | No description available
Kf | No description available
Kg | No description available
Kh | No description available
Ki | No description available
Kj | No description available
Kk | No description available
Kl | No description available
Km | No description available
Kn | No description available
Ko | No description available
Kp | No description available
Kq | No description available
Kr | No description available
Ks | No description available
Kt | No description available
Ku | No description available
Kv | No description available
Kw | No description available
Kx | No description available
Ky | No description available
Kz | No description available
L | No description available
L0 | No description available
L1 | No description available
L2 | No description available
L3 | No description available
L4 | No description available
L5 | No description available
L6 | No description available
L7 | No description available
L8 | No description available
L9 | No description available
LA | No description available
LB | No description available
LC | No description available
LD | No description available
LE | No description available
LF | No description available
LG | No description available
LH | No description available
LI | No description available
LJ | No description available
LK | No description available
LL | No description available
LM | No description available
LN | No description available
LO | No description available
LP | No description available
LQ | No description available
LR | No description available
LS | No description available
LT | No description available
LU | No description available
LV | No description available
LW | No description available
LX | No description available
LY | No description available
LZ | No description available
La | No description available
Lb | No description available
Lc | No description available
Ld | No description available
Le | No description available
Lg | No description available
Lh | No description available
Li | No description available
Lj | No description available
Lk | No description available
Ll | No description available
Lm | No description available
Ln | No description available
Lo | No description available
Lp | No description available
Lq | No description available
Lr | No description available
Ls | No description available
Lt | No description available
Lu | No description available
Lv | No description available
Lw | No description available
Lx | No description available
Ly | No description available
Lz | No description available
M | No description available
MA | No description available
MB | No description available
MC | No description available
MD | No description available
ME | No description available
MF | No description available
MG | No description available
MH | No description available
MI | No description available
N | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
W | No description available
X | No description available
Z | No description available
a | No description available
c | No description available
e | No description available
g | No description available
i | No description available
j | No description available
k | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
u | No description available
v | No description available
y | No description available
> open
> /Users/mbell/sshfs/c0140_4_MotionCor2/RhFlaB_Modelangelo_SingleParticle_1/gnn_output_round_1/output.cif
Summary of feedback from opening
/Users/mbell/sshfs/c0140_4_MotionCor2/RhFlaB_Modelangelo_SingleParticle_1/gnn_output_round_1/output.cif
---
warnings | Missing entity information. Treating each chain as a separate
entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for output.cif #2
---
Chain | Description
E | No description available
> select add #2
1959 atoms, 1959 bonds, 271 residues, 1 model selected
> style sel sphere
Changed 1959 atom styles
> hide sel cartoons
> select subtract #2
Nothing selected
> select add #1
149574 atoms, 149592 bonds, 19841 residues, 1 model selected
> style sel sphere
Changed 149574 atom styles
> hide sel cartoons
> hide sel atoms
> show sel atoms
> style sel ball
Changed 149574 atom styles
> select subtract #1
Nothing selected
> select add #2
1959 atoms, 1959 bonds, 271 residues, 1 model selected
> style sel ball
Changed 1959 atom styles
> select clear
Drag select of 197 atoms, 184 bonds
> undo
[Repeated 5 time(s)]
> close #2
> select clear
> open
> /Users/mbell/sshfs/c0140_4_MotionCor2/RhFlaB_Modelangelo_SingleParticle_1/gnn_output_round_1/output.cif
Summary of feedback from opening
/Users/mbell/sshfs/c0140_4_MotionCor2/RhFlaB_Modelangelo_SingleParticle_1/gnn_output_round_1/output.cif
---
warnings | Missing entity information. Treating each chain as a separate
entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for output.cif #2
---
Chain | Description
E | No description available
Drag select of 127 atoms, 267 residues, 101 bonds
> select add #2
1959 atoms, 1959 bonds, 271 residues, 1 model selected
> select subtract #2
Nothing selected
> select add #2
1959 atoms, 1959 bonds, 271 residues, 1 model selected
> show sel cartoons
> hide sel atoms
[Repeated 2 time(s)]
> show sel atoms
> hide sel cartoons
[Repeated 1 time(s)]
> style sel ball
Changed 1959 atom styles
> select clear
> select add #2
1959 atoms, 1959 bonds, 271 residues, 1 model selected
> select add #1
151533 atoms, 151551 bonds, 20112 residues, 2 models selected
> select subtract #2
149574 atoms, 149592 bonds, 19841 residues, 1 model selected
> hide sel cartoons
> show sel atoms
> style sel ball
Changed 149574 atom styles
> select clear
> align #2 #1
Missing required "to_atoms" argument
> align #2 toAtoms #1
Unequal number of atoms to pair, 1959 and 149574
Drag select of 1959 atoms, 1959 bonds
Drag select of 3876 atoms, 3889 bonds
> select clear
> open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/RHom Model.pdb"
Chain information for RHom Model.pdb #3
---
Chain | Description
A | No description available
> close #3
> open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_single_Map_3.1A.mrc"
Opened Rhom_single_Map_3.1A.mrc as #3, grid size 62,90,171, pixel
0.94,0.94,0.94, shown at level 0.0155, step 1, values float32
> save "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_Modelangelo_Structure.cxs"
——— End of log from Tue Jul 4 11:16:35 2023 ———
opened ChimeraX session
> close #1
> select add #2
1959 atoms, 1959 bonds, 271 residues, 1 model selected
> select subtract #2
Nothing selected
> select add #3
2 models selected
> select subtract #3
Nothing selected
Drag select of 1959 atoms, 1959 bonds
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,97.909,0,1,0,86.342,0,0,1,96.353
> view matrix models #2,1,0,0,85.258,0,1,0,58.37,0,0,1,93.379
> view matrix models #2,1,0,0,66.895,0,1,0,48.042,0,0,1,126.37
> view matrix models #2,1,0,0,64.68,0,1,0,50.732,0,0,1,134.58
> view matrix models #2,1,0,0,66.68,0,1,0,54.327,0,0,1,137.92
> ui tool show "Fit in Map"
> fitmap #2 inMap #3
Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
atoms
average map value = 0.01058, steps = 108
shifted from previous position = 4.64
rotated from previous position = 6.55 degrees
atoms outside contour = 1344, contour level = 0.015457
Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
coordinates:
Matrix rotation and translation
0.99347128 0.10820489 -0.03614570 60.82207281
-0.10821022 0.99412638 0.00181464 68.46264592
0.03612974 0.00210855 0.99934488 132.41140434
Axis 0.00128814 -0.31676814 -0.94850213
Axis point 231.62189310 -549.87806515 0.00000000
Rotation angle (degrees) 6.55071146
Shift along axis -147.20093620
> select clear
> select add #2
1959 atoms, 1959 bonds, 271 residues, 1 model selected
> view matrix models
> #2,0.99347,0.1082,-0.036146,60.933,-0.10821,0.99413,0.0018146,65.972,0.03613,0.0021085,0.99934,127.37
> fitmap #2 inMap #3
Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
atoms
average map value = 0.02421, steps = 72
shifted from previous position = 1.47
rotated from previous position = 6.52 degrees
atoms outside contour = 658, contour level = 0.015457
Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
coordinates:
Matrix rotation and translation
0.99999959 0.00029316 -0.00085220 67.73248431
-0.00029329 0.99999995 -0.00015454 57.38358651
0.00085216 0.00015479 0.99999962 130.55639485
Axis 0.16914069 -0.93196347 -0.32067976
Axis point -121595.67301666 0.00000000 96187.38249521
Rotation angle (degrees) 0.05239076
Shift along axis -83.88988135
> fitmap #2 inMap #3
Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
atoms
average map value = 0.0242, steps = 28
shifted from previous position = 0.0226
rotated from previous position = 0.0709 degrees
atoms outside contour = 661, contour level = 0.015457
Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
coordinates:
Matrix rotation and translation
0.99999947 -0.00088475 -0.00053198 67.83256327
0.00088456 0.99999954 -0.00035732 57.30633573
0.00053229 0.00035685 0.99999979 130.55894477
Axis 0.32688814 -0.48713399 0.80984234
Axis point -119829.74249550 39797.50462547 0.00000000
Rotation angle (degrees) 0.06258882
Shift along axis 99.98995751
> fitmap #2 inMap #3
Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
atoms
average map value = 0.0242, steps = 28
shifted from previous position = 0.0231
rotated from previous position = 0.0261 degrees
atoms outside contour = 656, contour level = 0.015457
Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
coordinates:
Matrix rotation and translation
0.99999904 -0.00131799 -0.00042270 67.84532631
0.00131788 0.99999910 -0.00026886 57.24851943
0.00042306 0.00026830 0.99999987 130.58374318
Axis 0.19049067 -0.29992730 0.93474965
Axis point -70229.22392782 34499.11365366 0.00000000
Rotation angle (degrees) 0.08078342
Shift along axis 117.81661662
> view matrix models
> #2,1,-0.001318,-0.0004227,67.919,0.0013179,1,-0.00026886,56.884,0.00042306,0.0002683,1,130.74
> fitmap #2 inMap #3
Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
atoms
average map value = 0.0242, steps = 40
shifted from previous position = 0.403
rotated from previous position = 0.0144 degrees
atoms outside contour = 657, contour level = 0.015457
Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
coordinates:
Matrix rotation and translation
0.99999933 -0.00111730 -0.00031362 67.82102931
0.00111724 0.99999936 -0.00016595 57.25935141
0.00031381 0.00016560 0.99999994 130.60311006
Axis 0.14141145 -0.26761422 0.95309256
Axis point -79667.34121350 45720.14244302 0.00000000
Rotation angle (degrees) 0.06716538
Shift along axis 118.74410585
> fitmap #2 inMap #3
Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
atoms
average map value = 0.0242, steps = 28
shifted from previous position = 0.0197
rotated from previous position = 0.0182 degrees
atoms outside contour = 661, contour level = 0.015457
Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
coordinates:
Matrix rotation and translation
0.99999946 -0.00091709 -0.00048321 67.83042491
0.00091693 0.99999952 -0.00034537 57.30265852
0.00048353 0.00034493 0.99999982 130.56466862
Axis 0.31591135 -0.44241962 0.83932408
Axis point -113457.17241304 37631.25557227 0.00000000
Rotation angle (degrees) 0.06259891
Shift along axis 105.66265040
> select clear
> open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/RHom Model.pdb"
Chain information for RHom Model.pdb #1
---
Chain | Description
A | No description available
> select add #1
3810 atoms, 3847 bonds, 506 residues, 1 model selected
> view matrix models #1,1,0,0,-13.922,0,1,0,9.0035,0,0,1,43.758
> view matrix models #1,1,0,0,-30.419,0,1,0,15.254,0,0,1,92.603
> view matrix models #1,1,0,0,-15.265,0,1,0,3.307,0,0,1,43.511
> fitmap #1 inMap #3
Fit molecule RHom Model.pdb (#1) to map Rhom_single_Map_3.1A.mrc (#3) using
3810 atoms
average map value = 0.01007, steps = 720
shifted from previous position = 16.7
rotated from previous position = 0.685 degrees
atoms outside contour = 2635, contour level = 0.015457
Position of RHom Model.pdb (#1) relative to Rhom_single_Map_3.1A.mrc (#3)
coordinates:
Matrix rotation and translation
0.99992970 0.01076969 -0.00496113 -0.94123681
-0.01077734 0.99994077 -0.00151801 2.24301404
0.00494448 0.00157137 0.99998654 49.16798211
Axis 0.12918030 -0.41419617 -0.90097391
Axis point -1532.19901378 -466.56587160 0.00000000
Rotation angle (degrees) 0.68513803
Shift along axis -45.34970608
> fitmap #1 inMap #3
Fit molecule RHom Model.pdb (#1) to map Rhom_single_Map_3.1A.mrc (#3) using
3810 atoms
average map value = 0.01007, steps = 44
shifted from previous position = 0.0105
rotated from previous position = 0.00932 degrees
atoms outside contour = 2636, contour level = 0.015457
Position of RHom Model.pdb (#1) relative to Rhom_single_Map_3.1A.mrc (#3)
coordinates:
Matrix rotation and translation
0.99993110 0.01065412 -0.00492772 -0.92615228
-0.01066225 0.99994183 -0.00162793 2.25052608
0.00491009 0.00168036 0.99998653 49.15868308
Axis 0.13953767 -0.41494050 -0.89908488
Axis point -1547.51953993 -515.86347939 0.00000000
Rotation angle (degrees) 0.67922768
Shift along axis -45.26089610
> style sel ball
Changed 3810 atom styles
> hide sel cartoons
> show sel atoms
> view matrix models
> #1,0.99993,0.010654,-0.0049277,-1.0602,-0.010662,0.99994,-0.0016279,2.4652,0.0049101,0.0016804,0.99999,49.468
> view matrix models
> #1,0.99993,0.010654,-0.0049277,-1.0047,-0.010662,0.99994,-0.0016279,2.498,0.0049101,0.0016804,0.99999,49.456
> fitmap #1 inMap #3
Fit molecule RHom Model.pdb (#1) to map Rhom_single_Map_3.1A.mrc (#3) using
3810 atoms
average map value = 0.01007, steps = 104
shifted from previous position = 0.403
rotated from previous position = 0.0245 degrees
atoms outside contour = 2634, contour level = 0.015457
Position of RHom Model.pdb (#1) relative to Rhom_single_Map_3.1A.mrc (#3)
coordinates:
Matrix rotation and translation
0.99993549 0.01033040 -0.00472316 -0.91609743
-0.01033730 0.99994553 -0.00143858 2.15987648
0.00470805 0.00148732 0.99998781 49.21448192
Axis 0.12773780 -0.41174421 -0.90230248
Axis point -1597.34536237 -482.83433144 0.00000000
Rotation angle (degrees) 0.65620887
Shift along axis -45.41268578
> select clear
> hide #1 models
> show #1 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #!3 models
> show #!3 models
> hide #1 models
> color #3 #b2b2b24f models
> color #3 #b2b2b24a models
> color #3 #b2b2b23c models
> show #1 models
> hide #2 models
> hide #1 models
> show #2 models
> show #1 models
> hide #2 models
Drag select of 3 Rhom_single_Map_3.1A.mrc , 980 atoms, 995 bonds
> select clear
Drag select of 3 Rhom_single_Map_3.1A.mrc , 744 atoms, 753 bonds
> select clear
Drag select of 181 atoms, 185 bonds
Drag select of 658 atoms, 661 bonds
> delete atoms sel
> delete bonds sel
Drag select of 3 Rhom_single_Map_3.1A.mrc , 60 atoms, 63 bonds, 1 pseudobonds
> select clear
Drag select of 3 Rhom_single_Map_3.1A.mrc , 243 atoms, 246 bonds, 1
pseudobonds
> select clear
Drag select of 3 Rhom_single_Map_3.1A.mrc , 209 atoms, 210 bonds, 1
pseudobonds
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #2/E
Alignment identifier is 2/E
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> select #2/E:1
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #2/E:1
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #2/E:8-33,44-98,105-128,179-232,236-262,264-266
1381 atoms, 1379 bonds, 189 residues, 1 model selected
> select #2/E:1-2
10 atoms, 9 bonds, 2 residues, 1 model selected
> select #2/E
1936 atoms, 1940 bonds, 267 residues, 1 model selected
> select #1/A:506
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/A:419-506
690 atoms, 695 bonds, 88 residues, 1 model selected
> select #1/A:506
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/A:417-506
709 atoms, 714 bonds, 90 residues, 1 model selected
> select #1/A:417-506
709 atoms, 714 bonds, 90 residues, 1 model selected
> select #1/A:417-506
709 atoms, 714 bonds, 90 residues, 1 model selected
> select #1/A:417-506
709 atoms, 714 bonds, 90 residues, 1 model selected
> select #1/A:408-410,417-506
732 atoms, 736 bonds, 93 residues, 1 model selected
> select #1/A:416
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #1/A:411-416
38 atoms, 37 bonds, 6 residues, 1 model selected
> select #1/A:410
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:407-410
31 atoms, 30 bonds, 4 residues, 1 model selected
> select #1/A:405-406
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/A:401-406
51 atoms, 51 bonds, 6 residues, 1 model selected
> select #1/A:400
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/A:392-400
71 atoms, 71 bonds, 9 residues, 1 model selected
> volume #3 color #f1f1f13c
> volume #3 color #f1f1f166
> select #1/A:390-391
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/A:373-391
140 atoms, 140 bonds, 19 residues, 1 model selected
> select #1/A:371-372
20 atoms, 20 bonds, 2 residues, 1 model selected
> select #1/A:367-372
46 atoms, 46 bonds, 6 residues, 1 model selected
> select #1/A:377
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1/A:367-377
80 atoms, 80 bonds, 11 residues, 1 model selected
> select #1/A:378
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:378-382
40 atoms, 40 bonds, 5 residues, 1 model selected
> select #1/A:377
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1/A:374-377
27 atoms, 26 bonds, 4 residues, 1 model selected
> select #1/A:375
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:159-375
937 atoms, 940 bonds, 7 pseudobonds, 136 residues, 2 models selected
> select #1/A:375-376
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #1/A:164-376
913 atoms, 915 bonds, 7 pseudobonds, 132 residues, 2 models selected
> select #1/A:163
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:155-163
63 atoms, 63 bonds, 9 residues, 1 model selected
> select #1/A:369
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:367-369
17 atoms, 16 bonds, 3 residues, 1 model selected
> select #1/A:377
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1/A:369-377
71 atoms, 71 bonds, 9 residues, 1 model selected
> select #1/A:375
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:371-375
42 atoms, 42 bonds, 5 residues, 1 model selected
> select #1/A:376-377
12 atoms, 11 bonds, 2 residues, 1 model selected
> select #1/A:376-377
12 atoms, 11 bonds, 2 residues, 1 model selected
> select #1/A:375
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:375
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:224-376
727 atoms, 731 bonds, 4 pseudobonds, 104 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:218-376
759 atoms, 762 bonds, 5 pseudobonds, 110 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:218-376
759 atoms, 762 bonds, 5 pseudobonds, 110 residues, 2 models selected
> select #1/A:326-376
232 atoms, 231 bonds, 2 pseudobonds, 32 residues, 2 models selected
> select #1/A:175-376
826 atoms, 827 bonds, 7 pseudobonds, 121 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:129-376
1182 atoms, 1186 bonds, 7 pseudobonds, 167 residues, 2 models selected
> select #1/A:275-376
601 atoms, 606 bonds, 2 pseudobonds, 83 residues, 2 models selected
> select #1/A:70-376
1632 atoms, 1637 bonds, 7 pseudobonds, 226 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:194-376
821 atoms, 823 bonds, 6 pseudobonds, 120 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:194-376
821 atoms, 823 bonds, 6 pseudobonds, 120 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:174-376
835 atoms, 836 bonds, 7 pseudobonds, 122 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:173-376
842 atoms, 843 bonds, 7 pseudobonds, 123 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:168-376
875 atoms, 876 bonds, 7 pseudobonds, 128 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:161-376
932 atoms, 935 bonds, 7 pseudobonds, 135 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:154-376
985 atoms, 988 bonds, 7 pseudobonds, 142 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:148-376
1029 atoms, 1031 bonds, 7 pseudobonds, 148 residues, 2 models selected
> select #1/A:376-377
12 atoms, 11 bonds, 2 residues, 1 model selected
> select #1/A:145-377
1059 atoms, 1062 bonds, 7 pseudobonds, 152 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:139-376
1099 atoms, 1102 bonds, 7 pseudobonds, 157 residues, 2 models selected
> select #1/A:376
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:141-376
1089 atoms, 1092 bonds, 7 pseudobonds, 155 residues, 2 models selected
> select #1/A:376-377
12 atoms, 11 bonds, 2 residues, 1 model selected
> select #1/A:145-376
1055 atoms, 1058 bonds, 7 pseudobonds, 151 residues, 2 models selected
> delete atoms (#!1 & sel)
> delete bonds (#!1 & sel)
> select #1/A:144
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:141-144
34 atoms, 33 bonds, 4 residues, 1 model selected
> select #1/A:144
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:143-144
18 atoms, 17 bonds, 2 residues, 1 model selected
> select #1/A:144
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:142-144
26 atoms, 25 bonds, 3 residues, 1 model selected
> select #1/A:144
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:143-144
18 atoms, 17 bonds, 2 residues, 1 model selected
> select #1/A:144
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:144
11 atoms, 10 bonds, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> select #1/A:142-143
15 atoms, 14 bonds, 2 residues, 1 model selected
> select #1/A:130-143
109 atoms, 109 bonds, 14 residues, 1 model selected
> select #1/A:7-32,43-98,105-128,415-466,470-505
1476 atoms, 1479 bonds, 194 residues, 1 model selected
> select #1/A:506
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/A:377-506
1010 atoms, 1018 bonds, 130 residues, 1 model selected
> view matrix models
> #1,0.99994,0.01033,-0.0047232,-0.94418,-0.010337,0.99995,-0.0014386,2.1369,0.004708,0.0014873,0.99999,49.25
> select clear
> molmap help
Missing or invalid "atoms" argument: invalid atoms specifier
> molmap #1
Missing or invalid "resolution" argument: Expected a number
> molmap #1 5
Opened RHom Model.pdb map 5 as #4, grid size 38,51,102, pixel 1.67, shown at
level 0.0829, step 1, values float32
> molmap #1 3
Opened RHom Model.pdb map 3 as #4, grid size 51,73,158, pixel 1, shown at
level 0.115, step 1, values float32
> color #4 #b2ffff4d models
> color #4 #b2ffff56 models
> color #4 #b2ffff57 models
> volume style mesh
> select add #4
2 models selected
> select add #3
4 models selected
> select add #2
1959 atoms, 1959 bonds, 271 residues, 5 models selected
> select subtract #3
1959 atoms, 1959 bonds, 271 residues, 3 models selected
> select subtract #4
1959 atoms, 1959 bonds, 271 residues, 1 model selected
> select subtract #2
Nothing selected
> select add #3
2 models selected
> select subtract #3
Nothing selected
> select add #3
2 models selected
> volume sel style surface
> color #4 #fffaa557 models
> select clear
> color #4 #fff2fc57 models
> color #3 #f485a866 models
> select clear
> save "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_Model_Trimmed.pdb" models #1
> open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_Model_Trimmed.pdb"
Chain information for Rhom_Model_Trimmed.pdb #5
---
Chain | Description
A | No description available
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> select add #5
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> save "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_Trimming.cxs"
> open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_Flagella_Map_2RingMasked.mrc"
Opened Rhom_Flagella_Map_2RingMasked.mrc as #6, grid size 200,201,275, pixel
0.94,0.94,0.94, shown at level 0.024, step 1, values float32
> open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_Flagella_2ring_Structure.pdb"
Chain information for Rhom_Flagella_2ring_Structure.pdb #7
---
Chain | Description
A B C D E F G H I J K L M N O P Q R S T U V | No description available
> fitmap #7 inMap #6
Fit molecule Rhom_Flagella_2ring_Structure.pdb (#7) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 83820 atoms
average map value = 0.007079, steps = 72
shifted from previous position = 5.09
rotated from previous position = 2.16 degrees
atoms outside contour = 70476, contour level = 0.023968
Position of Rhom_Flagella_2ring_Structure.pdb (#7) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99941328 0.00831391 -0.03322614 2.42391291
-0.00779503 0.99984611 0.01571575 3.87752202
0.03335168 -0.01544753 0.99932429 -1.39529499
Axis -0.41410459 -0.88470112 -0.21405914
Axis point 68.78778028 0.00000000 20.19534846
Rotation angle (degrees) 2.15639429
Shift along axis -4.13552589
> show sel cartoons
> hide sel atoms
> hide sel cartoons
[Repeated 1 time(s)]
> select add #7
85906 atoms, 86732 bonds, 1 pseudobond, 11405 residues, 3 models selected
> show sel cartoons
> hide sel atoms
> view matrix models
> #5,1,0,0,-2.1084,0,1,0,1.8671,0,0,1,-0.13608,#7,0.99941,0.0083139,-0.033226,0.31552,-0.007795,0.99985,0.015716,5.7446,0.033352,-0.015448,0.99932,-1.5314
> fitmap #7 inMap #6
Fit molecule Rhom_Flagella_2ring_Structure.pdb (#7) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 83820 atoms
average map value = 0.007079, steps = 56
shifted from previous position = 2.82
rotated from previous position = 0.00198 degrees
atoms outside contour = 70482, contour level = 0.023968
Position of Rhom_Flagella_2ring_Structure.pdb (#7) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99941342 0.00834530 -0.03321396 2.42053504
-0.00782632 0.99984573 0.01572470 3.88499925
0.03334006 -0.01545554 0.99932456 -1.39023132
Axis -0.41433323 -0.88439166 -0.21489384
Axis point 68.78858415 0.00000000 20.01684298
Rotation angle (degrees) 2.15637773
Shift along axis -4.14001690
> select clear
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #2 models
> close #2
> hide #!3 models
> show #!3 models
> show #!1 models
> close #1
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> close #3
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!5 models
> fitmap #7 inMap #6
Fit molecule Rhom_Flagella_2ring_Structure.pdb (#7) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 83820 atoms
average map value = 0.00708, steps = 48
shifted from previous position = 0.0159
rotated from previous position = 0.00304 degrees
atoms outside contour = 70464, contour level = 0.023968
Position of Rhom_Flagella_2ring_Structure.pdb (#7) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99941410 0.00833251 -0.03319663 2.40998956
-0.00781543 0.99984658 0.01567579 3.89184423
0.03332215 -0.01540716 0.99932590 -1.38371237
Axis -0.41346098 -0.88482317 -0.21479755
Axis point 68.63053710 0.00000000 19.78779146
Rotation angle (degrees) 2.15418383
Shift along axis -4.14281255
> select add #7
83820 atoms, 84634 bonds, 11132 residues, 1 model selected
> view matrix models
> #7,0.99941,0.0083325,-0.033197,3.1068,-0.0078154,0.99985,0.015676,3.3793,0.033322,-0.015407,0.99933,0.10347
> fitmap #7 inMap #6
Fit molecule Rhom_Flagella_2ring_Structure.pdb (#7) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 83820 atoms
average map value = 0.00708, steps = 56
shifted from previous position = 1.72
rotated from previous position = 0.00412 degrees
atoms outside contour = 70477, contour level = 0.023968
Position of Rhom_Flagella_2ring_Structure.pdb (#7) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99941227 0.00830541 -0.03325853 2.43164580
-0.00778821 0.99984720 0.01565023 3.89135691
0.03338343 -0.01538201 0.99932424 -1.39751439
Axis -0.41236698 -0.88556110 -0.21385746
Axis point 68.86095184 0.00000000 20.44270297
Rotation angle (degrees) 2.15637569
Shift along axis -4.14989586
> color #6 #b2b2ff7e models
> color #6 #b2b2ff88 models
> color #6 #b2b2ff79 models
> hide #!4 models
> color #6 #b2b2ff78 models
> hide #!5 models
> fitmap #7 inMap #6
Fit molecule Rhom_Flagella_2ring_Structure.pdb (#7) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 83820 atoms
average map value = 0.00708, steps = 44
shifted from previous position = 0.00914
rotated from previous position = 0.0027 degrees
atoms outside contour = 70494, contour level = 0.023968
Position of Rhom_Flagella_2ring_Structure.pdb (#7) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99941181 0.00833580 -0.03326494 2.43053488
-0.00781730 0.99984640 0.01568656 3.89431559
0.03339059 -0.01541729 0.99932346 -1.40061749
Axis -0.41302053 -0.88510267 -0.21449315
Axis point 69.01866255 0.00000000 20.31497808
Rotation angle (degrees) 2.15793247
Shift along axis -4.15030705
> show #!5 models
> fitmap #5 inMap #6
Fit molecule Rhom_Model_Trimmed.pdb (#5) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0153, steps = 76
shifted from previous position = 3.31
rotated from previous position = 0.248 degrees
atoms outside contour = 1412, contour level = 0.023968
Position of Rhom_Model_Trimmed.pdb (#5) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99999230 0.00391234 -0.00029560 -0.47865793
-0.00391179 0.99999065 0.00184592 0.18264322
0.00030282 -0.00184475 0.99999825 1.71855537
Axis -0.42560545 -0.06900949 -0.90227362
Axis point 22.06071992 270.28166264 0.00000000
Rotation angle (degrees) 0.24842319
Shift along axis -1.35949187
> hide #7 models
> show #!5 cartoons
> select add #5
85906 atoms, 86732 bonds, 1 pseudobond, 11405 residues, 3 models selected
> hide sel & #!5 atoms
> show sel & #!5 cartoons
> select subtract #7
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> show sel cartoons
> show sel atoms
> select clear
> fitmap #5 inMap #6
Fit molecule Rhom_Model_Trimmed.pdb (#5) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0153, steps = 40
shifted from previous position = 0.0102
rotated from previous position = 0.00877 degrees
atoms outside contour = 1413, contour level = 0.023968
Position of Rhom_Model_Trimmed.pdb (#5) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99999286 0.00376392 -0.00032722 -0.44193462
-0.00376331 0.99999125 0.00182630 0.16961057
0.00033409 -0.00182505 0.99999828 1.71025773
Axis -0.43508939 -0.07880068 -0.89693237
Axis point 16.05824877 274.08315600 0.00000000
Rotation angle (degrees) 0.24041924
Shift along axis -1.35506987
> select add #5
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #5,0.99999,0.0037639,-0.00032722,-0.64276,-0.0037633,0.99999,0.0018263,-0.47486,0.00033409,-0.0018251,1,2.0523
> fitmap #5 inMap #6
Fit molecule Rhom_Model_Trimmed.pdb (#5) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0153, steps = 44
shifted from previous position = 0.747
rotated from previous position = 0.00745 degrees
atoms outside contour = 1414, contour level = 0.023968
Position of Rhom_Model_Trimmed.pdb (#5) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99999253 0.00384244 -0.00043079 -0.43723374
-0.00384165 0.99999095 0.00182856 0.17026178
0.00043781 -0.00182689 0.99999824 1.69063262
Axis -0.42736499 -0.10155018 -0.89835779
Axis point 8.03288068 263.87014248 0.00000000
Rotation angle (degrees) 0.24503993
Shift along axis -1.34922472
> combine #5 #1
[Repeated 1 time(s)]Remapping chain ID 'A' in copy of Rhom_Model_Trimmed.pdb
#1 to 'B'
> hide #!1 models
> show #!1 models
> color #1 #fd96c7ff
> select add #1
4172 atoms, 4196 bonds, 2 pseudobonds, 546 residues, 4 models selected
> select subtract #5
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #1,0.99999,0.0038424,-0.00043079,-8.2082,-0.0038416,0.99999,0.0018286,11.123,0.00043781,-0.0018269,1,-18.325
> fitmap #1 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#1) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005191, steps = 84
shifted from previous position = 3.77
rotated from previous position = 4.56 degrees
atoms outside contour = 1910, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#1) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99765271 0.03748498 0.05730572 -22.36928345
-0.03508476 0.99848738 -0.04233216 27.34354371
-0.05880585 0.04022223 0.99745879 -16.74397663
Axis 0.51633326 0.72621533 -0.45388463
Axis point -184.69132144 0.00000000 526.11050575
Rotation angle (degrees) 4.58528567
Shift along axis 15.90712927
> view matrix models
> #1,0.99765,0.037485,0.057306,-22.911,-0.035085,0.99849,-0.042332,28.783,-0.058806,0.040222,0.99746,-20.078
> view matrix models
> #1,0.99765,0.037485,0.057306,-23.261,-0.035085,0.99849,-0.042332,28.874,-0.058806,0.040222,0.99746,-21.66
> fitmap #1 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#1) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0154, steps = 408
shifted from previous position = 7.99
rotated from previous position = 30.8 degrees
atoms outside contour = 1391, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#1) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.84225914 0.53907063 0.00154885 -69.12736628
-0.53907251 0.84225837 0.00129107 125.40398688
-0.00060855 -0.00192236 0.99999797 -26.30325313
Axis -0.00298050 0.00200101 -0.99999356
Axis point 179.66583058 180.65953785 0.00000000
Rotation angle (degrees) 32.62069505
Shift along axis 26.76005324
> fitmap #1 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#1) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0154, steps = 40
shifted from previous position = 0.0117
rotated from previous position = 0.125 degrees
atoms outside contour = 1393, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#1) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.84113355 0.54082639 0.00108187 -69.10754731
-0.54082747 0.84113178 0.00172520 125.76282670
0.00002304 -0.00203623 0.99999793 -26.37805333
Axis -0.00347745 0.00097889 -0.99999347
Axis point 179.51408955 180.34127727 0.00000000
Rotation angle (degrees) 32.74018996
Shift along axis 26.74130747
> fitmap #5 inMap #6
Fit molecule Rhom_Model_Trimmed.pdb (#5) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0153, steps = 28
shifted from previous position = 0.0237
rotated from previous position = 0.00496 degrees
atoms outside contour = 1414, contour level = 0.023968
Position of Rhom_Model_Trimmed.pdb (#5) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99999234 0.00389474 -0.00039177 -0.45004284
-0.00389400 0.99999064 0.00188554 0.18321592
0.00039911 -0.00188400 0.99999815 1.72182169
Axis -0.43382623 -0.09102011 -0.89638727
Axis point 14.50489729 267.60781804 0.00000000
Rotation angle (degrees) 0.24892335
Shift along axis -1.36485500
> show #7 models
> hide #7 models
> combine #5 #2
Remapping chain ID 'A' in combination #2 to 'C'
> color #2 #fdd19dff
> color #2 #fddb9dff
> hide #!6 models
> show #!6 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> hide #!3 models
> show #!3 models
> show #!5 models
> select add #3
8344 atoms, 8392 bonds, 4 pseudobonds, 1092 residues, 4 models selected
> select subtract #1
6258 atoms, 6294 bonds, 3 pseudobonds, 819 residues, 2 models selected
> view matrix models
> #3,0.99999,0.0038947,-0.00039177,2.8054,-0.003894,0.99999,0.0018855,-6.6065,0.00039911,-0.001884,1,6.9339
> hide #!5 models
> show #!5 models
> view matrix models
> #3,0.99999,0.0038947,-0.00039177,-7.2567,-0.003894,0.99999,0.0018855,18.161,0.00039911,-0.001884,1,10.691
> view matrix models
> #3,0.99999,0.0038947,-0.00039177,35.265,-0.003894,0.99999,0.0018855,7.4213,0.00039911,-0.001884,1,-26.639
> view matrix models
> #3,0.99999,0.0038947,-0.00039177,10.281,-0.003894,0.99999,0.0018855,-13.538,0.00039911,-0.001884,1,-20.295
> view matrix models
> #3,0.99999,0.0038947,-0.00039177,10.615,-0.003894,0.99999,0.0018855,-8.7424,0.00039911,-0.001884,1,-20.598
> select subtract #3
Nothing selected
> select add #2
4172 atoms, 4196 bonds, 2 pseudobonds, 546 residues, 2 models selected
> select subtract #2
Nothing selected
> select add #3
6258 atoms, 6294 bonds, 3 pseudobonds, 819 residues, 2 models selected
> fitmap #3 inMap #6
Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 6258 atoms
average map value = 0.006688, steps = 476
shifted from previous position = 4.14
rotated from previous position = 25 degrees
atoms outside contour = 5535, contour level = 0.023968
Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.90812779 -0.41401745 0.06239770 77.94184571
0.41485838 0.90988581 -0.00057409 -59.96311470
-0.05653710 0.02640756 0.99805120 -17.02822039
Axis 0.03220537 0.14196088 0.98934823
Axis point 169.81349364 152.35244006 0.00000000
Rotation angle (degrees) 24.76515557
Shift along axis -22.84911021
> fitmap #3 inMap #6
Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 6258 atoms
average map value = 0.006689, steps = 156
shifted from previous position = 0.0202
rotated from previous position = 0.0294 degrees
atoms outside contour = 5535, contour level = 0.023968
Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.90793420 -0.41442494 0.06250971 78.01015525
0.41528044 0.90969312 -0.00076451 -59.94095729
-0.05654782 0.02665318 0.99804406 -17.05719588
Axis 0.03269256 0.14196295 0.98933196
Axis point 169.66212220 152.34745749 0.00000000
Rotation angle (degrees) 24.79204732
Shift along axis -22.83427211
> show #7 models
> hide #7 models
> show #7 models
> hide #!3 models
> show #!3 models
> hide #7 models
> view matrix models
> #3,0.90793,-0.41442,0.06251,81.699,0.41528,0.90969,-0.00076451,-57.464,-0.056548,0.026653,0.99804,-19
> fitmap #3 inMap #6
Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 6258 atoms
average map value = 0.01535, steps = 104
shifted from previous position = 3.68
rotated from previous position = 8.86 degrees
atoms outside contour = 4209, contour level = 0.023968
Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.84245655 -0.53876134 -0.00178561 126.25883740
0.53876377 0.84245573 0.00139432 -69.10144592
0.00075309 -0.00213667 0.99999743 -21.77388096
Axis -0.00327692 -0.00235603 0.99999186
Axis point 181.33869092 181.18957997 0.00000000
Rotation angle (degrees) 32.59973870
Shift along axis -22.02463874
> fitmap #3 inMap #6
Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 6258 atoms
average map value = 0.01535, steps = 40
shifted from previous position = 0.00589
rotated from previous position = 0.0552 degrees
atoms outside contour = 4210, contour level = 0.023968
Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.84196449 -0.53953062 -0.00158093 126.40224509
0.53953275 0.84196305 0.00162223 -69.19804871
0.00045584 -0.00221882 0.99999743 -21.71348659
Axis -0.00355958 -0.00188751 0.99999188
Axis point 181.35461909 181.01539454 0.00000000
Rotation angle (degrees) 32.65206239
Shift along axis -22.03263694
> show #7 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> select add #2
10430 atoms, 10490 bonds, 5 pseudobonds, 1365 residues, 4 models selected
> select add #1
12516 atoms, 12588 bonds, 6 pseudobonds, 1638 residues, 6 models selected
> hide sel atoms
> select subtract #2
8344 atoms, 8392 bonds, 4 pseudobonds, 1092 residues, 4 models selected
> select subtract #1
6258 atoms, 6294 bonds, 3 pseudobonds, 819 residues, 2 models selected
> select subtract #3
Nothing selected
> hide #!3 models
> show #!3 models
> hide #7 models
> fitmap #3 inMap #6
Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 6258 atoms
average map value = 0.01535, steps = 40
shifted from previous position = 0.0139
rotated from previous position = 0.00585 degrees
atoms outside contour = 4207, contour level = 0.023968
Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.84191294 -0.53961117 -0.00154525 126.42393065
0.53961322 0.84191148 0.00162458 -69.20645904
0.00042432 -0.00220159 0.99999749 -21.72114946
Axis -0.00354527 -0.00182497 0.99999205
Axis point 181.35669738 181.01114380 0.00000000
Rotation angle (degrees) 32.65753505
Shift along axis -22.04288402
> select add #2
4172 atoms, 4196 bonds, 2 pseudobonds, 546 residues, 2 models selected
> view matrix models
> #2,0.99999,0.0038424,-0.00043079,4.3654,-0.0038416,0.99999,0.0018286,10.529,0.00043781,-0.0018269,1,1.9259
> view matrix models
> #2,0.99999,0.0038424,-0.00043079,7.9345,-0.0038416,0.99999,0.0018286,7.4742,0.00043781,-0.0018269,1,-29.802
> view matrix models
> #2,0.99999,0.0038424,-0.00043079,16.644,-0.0038416,0.99999,0.0018286,-2.213,0.00043781,-0.0018269,1,-48.376
> fitmap #2 inMap #6
Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 4172 atoms
average map value = 0.006569, steps = 324
shifted from previous position = 2.14
rotated from previous position = 18.1 degrees
atoms outside contour = 3730, contour level = 0.023968
Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.95081081 0.27007249 -0.15172226 17.84840141
-0.27778238 0.96011931 -0.03174668 52.21684211
0.13709757 0.07233086 0.98791321 -78.12541446
Axis 0.16572646 -0.45989837 -0.87236932
Axis point 264.37851951 10.96558232 0.00000000
Rotation angle (degrees) 18.30069528
Shift along axis 47.09772657
> view matrix models
> #2,0.95081,0.27007,-0.15172,8.8325,-0.27778,0.96012,-0.031747,65.034,0.1371,0.072331,0.98791,-93.433
> view matrix models
> #2,0.95081,0.27007,-0.15172,8.982,-0.27778,0.96012,-0.031747,62.538,0.1371,0.072331,0.98791,-93.42
> fitmap #2 inMap #6
Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 4172 atoms
average map value = 0.005749, steps = 488
shifted from previous position = 9.58
rotated from previous position = 20.8 degrees
atoms outside contour = 3782, contour level = 0.023968
Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.99077264 -0.07176632 -0.11497464 43.16078320
0.07538637 0.99677657 0.02744751 -19.52567711
0.11263422 -0.03586176 0.99298916 -71.33876119
Axis -0.22746089 -0.81776521 0.52869803
Axis point 502.16529550 0.00000000 272.64229203
Rotation angle (degrees) 7.99954085
Shift along axis -31.56663296
> view matrix models
> #2,0.99077,-0.071766,-0.11497,40.518,0.075386,0.99678,0.027448,-16.652,0.11263,-0.035862,0.99299,-71.782
> fitmap #2 inMap #6
Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 4172 atoms
average map value = 0.009063, steps = 312
shifted from previous position = 4.49
rotated from previous position = 15 degrees
atoms outside contour = 3460, contour level = 0.023968
Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.96577903 -0.24761346 0.07719089 26.69901778
0.24725112 0.96884490 0.01436825 -39.50002954
-0.07834378 0.00520898 0.99691279 -48.21369818
Axis -0.01765433 0.29979005 0.95384184
Axis point 100.38161483 89.79556593 0.00000000
Rotation angle (degrees) 15.03481890
Shift along axis -58.30131153
> show #7 models
> view matrix models
> #2,0.96578,-0.24761,0.077191,27.525,0.24725,0.96884,0.014368,-39.645,-0.078344,0.005209,0.99691,-38.024
> fitmap #2 inMap #6
Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 4172 atoms
average map value = 0.0152, steps = 100
shifted from previous position = 2.57
rotated from previous position = 15 degrees
atoms outside contour = 2886, contour level = 0.023968
Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.99999820 -0.00152133 -0.00113441 0.65619506
0.00152282 0.99999798 0.00131226 -0.68028884
0.00113241 -0.00131398 0.99999850 -50.13684871
Axis -0.56900919 -0.49113669 0.65955538
Axis point 11108.53034817 -11964.60385654 0.00000000
Rotation angle (degrees) 0.13222354
Shift along axis -33.10729433
> hide #7 models
> fitmap #2 inMap #6
Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 4172 atoms
average map value = 0.0152, steps = 40
shifted from previous position = 0.00531
rotated from previous position = 0.0479 degrees
atoms outside contour = 2886, contour level = 0.023968
Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.99999847 -0.00080115 -0.00155626 0.63364300
0.00080328 0.99999874 0.00136722 -0.57702850
0.00155517 -0.00136846 0.99999785 -50.19197229
Axis -0.61574506 -0.70031926 0.36112457
Axis point 28059.27797088 0.00000000 -6786.42896826
Rotation angle (degrees) 0.12727911
Shift along axis -18.11161271
> show #7 models
> hide #7 models
> select clear
> select add #5
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> hide sel cartoons
> show sel atoms
> show sel cartoons
> hide sel atoms
> select clear
> combine #5 #8
> color #8 #cffda2ff
> color #8 #c0fd97ff
> select add #8
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> show #7 models
> view matrix models
> #8,0.99999,0.0038947,-0.00039177,-12.077,-0.003894,0.99999,0.0018855,29.944,0.00039911,-0.001884,1,-31.356
> hide #7 models
> show #7 models
> hide #7 models
> show #7 models
> view matrix models
> #8,0.99999,0.0038947,-0.00039177,9.9494,-0.003894,0.99999,0.0018855,-3.8414,0.00039911,-0.001884,1,-44.408
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005737, steps = 308
shifted from previous position = 2.87
rotated from previous position = 8.09 degrees
atoms outside contour = 1873, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.98963206 0.11446546 -0.08675275 15.17760892
-0.11531570 0.99331712 -0.00483698 14.95758481
0.08561933 0.01479078 0.99621813 -57.67284258
Axis 0.06817136 -0.59868466 -0.79807853
Axis point 332.17674449 -79.81270352 0.00000000
Rotation angle (degrees) 8.27700137
Shift along axis 38.10725913
> hide #7 models
> show #7 models
> view matrix models
> #8,0.98963,0.11447,-0.086753,22.343,-0.11532,0.99332,-0.004837,9.8638,0.085619,0.014791,0.99622,-59.886
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005611, steps = 208
shifted from previous position = 4.45
rotated from previous position = 8.39 degrees
atoms outside contour = 1903, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99846740 -0.02179189 -0.05087212 35.00891322
0.01911164 0.99843325 -0.05259070 1.94902238
0.05193847 0.05153785 0.99731953 -58.66071553
Axis 0.68532516 -0.67665101 0.26920779
Axis point 0.00000000 1178.85944083 90.48366950
Rotation angle (degrees) 4.35696824
Shift along axis 6.88175951
> view matrix models
> #8,0.99847,-0.021792,-0.050872,31.659,0.019112,0.99843,-0.052591,2.8545,0.051938,0.051538,0.99732,-58.052
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.00543, steps = 112
shifted from previous position = 1.6
rotated from previous position = 3.6 degrees
atoms outside contour = 1905, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99816956 0.03820358 -0.04688290 21.88702379
-0.03969872 0.99871868 -0.03138501 8.02225321
0.04562380 0.03318875 0.99840722 -53.00833141
Axis 0.47100232 -0.67474573 -0.56822092
Axis point 728.77043456 0.00000000 86.60510381
Rotation angle (degrees) 3.93066831
Shift along axis 35.01630052
> view matrix models
> #8,0.99817,0.038204,-0.046883,26.782,-0.039699,0.99872,-0.031385,10.027,0.045624,0.033189,0.99841,-53.619
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005937, steps = 224
shifted from previous position = 4.48
rotated from previous position = 7.86 degrees
atoms outside contour = 1887, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.98063057 0.12782658 -0.14840504 36.74861252
-0.13437789 0.99031365 -0.03494935 23.99128554
0.14250008 0.05421475 0.98830890 -66.57035658
Axis 0.22199143 -0.72426510 -0.65280922
Axis point 322.96021236 0.00000000 154.25463707
Rotation angle (degrees) 11.58537024
Shift along axis 34.23956869
> view matrix models
> #8,0.98063,0.12783,-0.14841,31.117,-0.13438,0.99031,-0.034949,27.163,0.1425,0.054215,0.98831,-66.508
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.006034, steps = 968
shifted from previous position = 2.53
rotated from previous position = 40.9 degrees
atoms outside contour = 1879, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.63603298 0.71300671 -0.29509910 26.48908049
-0.73535420 0.67595937 0.04830254 150.97610156
0.23391503 0.18628035 0.95424493 -94.14169106
Axis 0.08912665 -0.34171622 -0.93556746
Axis point 193.96300777 66.71641718 0.00000000
Rotation angle (degrees) 50.71941320
Shift along axis 38.84580360
> undo
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.88345,0.13504,-0.44865,116.76,-0.11658,0.9908,0.068663,-1.5733,0.45379,-0.0083564,0.89107,-85.226
> view matrix models
> #8,0.9459,0.11504,-0.30338,78.097,-0.11819,0.99296,0.0080419,11.617,0.30216,0.028249,0.95284,-80.218
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005884, steps = 356
shifted from previous position = 3.12
rotated from previous position = 18.7 degrees
atoms outside contour = 1876, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.96996060 -0.17682189 -0.16706423 88.29882519
0.17488603 0.98423606 -0.02634866 -25.27257095
0.16908966 -0.00366003 0.98559388 -64.35991020
Axis 0.04658427 -0.69019085 0.72212637
Axis point 284.10826429 457.66536103 0.00000000
Rotation angle (degrees) 14.09452979
Shift along axis -24.91975433
> view matrix models
> #8,0.98932,-0.14562,0.0057109,42.705,0.14565,0.98667,-0.072598,-10.884,0.0049372,0.072655,0.99734,-52.437
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005998, steps = 92
shifted from previous position = 4.12
rotated from previous position = 3.41 degrees
atoms outside contour = 1871, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.98261996 -0.18420967 -0.02290877 58.62106601
0.18325365 0.98231071 -0.03851965 -26.00503180
0.02959923 0.03365206 0.99899521 -51.39348826
Axis 0.19085625 -0.13885606 0.97174734
Axis point 200.93861451 335.68205252 0.00000000
Rotation angle (degrees) 10.89871883
Shift along axis -35.14233193
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.98262,-0.18421,-0.022909,52.632,0.18325,0.98231,-0.03852,-20.177,0.029599,0.033652,0.999,-53.424
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.006147, steps = 180
shifted from previous position = 6.8
rotated from previous position = 7.69 degrees
atoms outside contour = 1876, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.94983071 -0.31270857 -0.00591292 77.96164300
0.31201435 0.94869190 -0.05129062 -37.40060957
0.02164856 0.04687249 0.99866627 -55.90463177
Axis 0.15507883 -0.04354185 0.98694208
Axis point 165.66074489 243.29202126 0.00000000
Rotation angle (degrees) 18.45104196
Shift along axis -41.45594120
> view matrix models
> #8,0.94983,-0.31271,-0.0059129,72.56,0.31201,0.94869,-0.051291,-35.194,0.021649,0.046872,0.99867,-56.216
> view matrix models
> #8,0.94983,-0.31271,-0.0059129,78.24,0.31201,0.94869,-0.051291,-31.624,0.021649,0.046872,0.99867,-54.846
> view matrix models
> #8,0.94983,-0.31271,-0.0059129,73.824,0.31201,0.94869,-0.051291,-29.812,0.021649,0.046872,0.99867,-55.144
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.006151, steps = 508
shifted from previous position = 8.68
rotated from previous position = 0.114 degrees
atoms outside contour = 1876, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.94924338 -0.31449804 -0.00529053 78.19091124
0.31383220 0.94809547 -0.05122832 -37.61869496
0.02112713 0.04696780 0.99867296 -55.84231169
Axis 0.15427379 -0.04150422 0.98715601
Axis point 165.42800099 242.28084795 0.00000000
Rotation angle (degrees) 18.55729158
Shift along axis -41.50093117
> view matrix models
> #8,0.94924,-0.3145,-0.0052905,71.118,0.31383,0.9481,-0.051228,-27.042,0.021127,0.046968,0.99867,-58.296
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.93557,-0.35,0.047021,67.222,0.35272,0.91957,-0.17318,-2.2147,0.017373,0.1786,0.98377,-74.378
> view matrix models
> #8,0.93822,-0.34172,0.054455,63.92,0.34601,0.92804,-0.13788,-10.156,-0.0034208,0.1482,0.98895,-67.607
> view matrix models
> #8,0.94659,-0.32045,0.035706,63.473,0.32215,0.9446,-0.062885,-25.282,-0.013576,0.071029,0.99738,-56.15
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.94659,-0.32045,0.035706,74.864,0.32215,0.9446,-0.062885,-53.903,-0.013576,0.071029,0.99738,-76.869
> view matrix models
> #8,0.94659,-0.32045,0.035706,73.638,0.32215,0.9446,-0.062885,-39.188,-0.013576,0.071029,0.99738,-78.638
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01505, steps = 136
shifted from previous position = 5.52
rotated from previous position = 14.7 degrees
atoms outside contour = 1432, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.83991382 -0.54271552 -0.00215344 127.51939843
0.54271809 0.83991451 0.00083064 -69.25907527
0.00135791 -0.00186637 0.99999734 -73.58400882
Axis -0.00248471 -0.00323494 0.99999168
Axis point 181.47298292 181.09859578 0.00000000
Rotation angle (degrees) 32.86908378
Shift along axis -73.67619611
> select #6
2 models selected
> select clear
> select add #8
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #8,0.83991,-0.54272,-0.0021534,128.12,0.54272,0.83991,0.00083064,-69.119,0.0013579,-0.0018664,1,-73.748
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01505, steps = 64
shifted from previous position = 0.637
rotated from previous position = 0.0807 degrees
atoms outside contour = 1435, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.83920527 -0.54381219 -0.00167905 127.69056905
0.54381415 0.83920500 0.00106297 -69.37714652
0.00083101 -0.00180514 0.99999803 -73.51432376
Axis -0.00263702 -0.00230781 0.99999386
Axis point 181.35447735 180.82603109 0.00000000
Rotation angle (degrees) 32.94382522
Shift along axis -73.69048583
> hide #7 models
> show sel atoms
> hide sel cartoons
> show sel cartoons
> hide sel atoms
> show #7 models
> hide #7 models
> select up
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> combine #8 #9
> hide #!9 models
> show #!9 models
> color #9 #5bfa40ff
> select subtract #8
Nothing selected
> select add #9
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #9,0.83921,-0.54381,-0.001679,139.41,0.54381,0.83921,0.001063,-63.16,0.00083101,-0.0018051,1,-80.57
> view matrix models
> #9,0.83921,-0.54381,-0.001679,148.35,0.54381,0.83921,0.001063,-61.461,0.00083101,-0.0018051,1,-83.804
> fitmap #9 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005288, steps = 88
shifted from previous position = 1.85
rotated from previous position = 1.55 degrees
atoms outside contour = 1912, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.83475177 -0.55048780 0.01235566 146.94976734
0.55015099 0.83475327 0.02282238 -67.14261997
-0.02287737 -0.01225354 0.99966318 -76.77566675
Axis -0.03183623 0.03197882 0.99898139
Axis point 179.71517421 208.16645980 0.00000000
Rotation angle (degrees) 33.42744212
Shift along axis -83.52293049
> view matrix models
> #9,0.83475,-0.55049,0.012356,136.5,0.55015,0.83475,0.022822,-62.481,-0.022877,-0.012254,0.99966,-74.502
> fitmap #9 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.004715, steps = 164
shifted from previous position = 4.94
rotated from previous position = 5.16 degrees
atoms outside contour = 1912, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.87917584 -0.47533556 0.03325578 113.79195005
0.47457597 0.87975677 0.02838445 -63.35722617
-0.04274914 -0.00917253 0.99904373 -70.91945081
Axis -0.03938081 0.07969586 0.99604102
Axis point 168.18062589 190.00164554 0.00000000
Rotation angle (degrees) 28.47945328
Shift along axis -80.16921029
> lighting simple
> ui mousemode right "rotate selected models"
> view matrix models
> #9,0.88806,-0.44961,-0.095911,136.74,0.44494,0.89307,-0.066733,-39.863,0.11566,0.016589,0.99315,-98.673
> fitmap #9 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.007383, steps = 112
shifted from previous position = 5.9
rotated from previous position = 5.1 degrees
atoms outside contour = 1792, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.87120678 -0.46809174 -0.14794891 157.88155797
0.45089261 0.88216452 -0.13594712 -27.15727185
0.19415100 0.05172899 0.97960681 -111.06379944
Axis 0.18797835 -0.34265084 0.92046431
Axis point 189.45442144 310.55895871 0.00000000
Rotation angle (degrees) 29.94682710
Shift along axis -63.24648643
> ui mousemode right "translate selected models"
> view matrix models
> #9,0.87121,-0.46809,-0.14795,166.46,0.45089,0.88216,-0.13595,-24.754,0.19415,0.051729,0.97961,-131.73
> fitmap #9 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01453, steps = 268
shifted from previous position = 3.86
rotated from previous position = 39.4 degrees
atoms outside contour = 1497, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41519119 -0.90972955 -0.00290285 270.73580245
0.90973054 0.41519644 -0.00150511 -58.18075864
0.00257449 -0.00201591 0.99999465 -97.24496960
Axis -0.00028074 -0.00301041 0.99999543
Axis point 180.83519548 181.32258560 0.00000000
Rotation angle (degrees) 65.46864582
Shift along axis -97.14538396
> show #7 models
> hide #7 models
> fitmap #9 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01453, steps = 28
shifted from previous position = 0.0132
rotated from previous position = 0.092 degrees
atoms outside contour = 1496, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41382336 -0.91035366 -0.00253856 270.96031019
0.91035493 0.41382695 -0.00108093 -58.16023370
0.00203455 -0.00186367 0.99999619 -97.17246003
Axis -0.00042991 -0.00251171 0.99999675
Axis point 180.81153069 181.17250427 0.00000000
Rotation angle (degrees) 65.55476719
Shift along axis -97.14255103
> fitmap #9 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01453, steps = 40
shifted from previous position = 0.0117
rotated from previous position = 0.0376 degrees
atoms outside contour = 1497, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41438751 -0.91009669 -0.00264725 270.86057188
0.91009777 0.41439168 -0.00126353 -58.15792502
0.00224693 -0.00188567 0.99999570 -97.21016985
Axis -0.00034180 -0.00268881 0.99999633
Axis point 180.80843136 181.23754816 0.00000000
Rotation angle (degrees) 65.51925316
Shift along axis -97.14601644
> combine #8 #10
> select subtract #9
Nothing selected
> select add #10
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> color #10 #fafa28ff
> view matrix models
> #10,0.83921,-0.54381,-0.001679,132.3,0.54381,0.83921,0.001063,-62.185,0.00083101,-0.0018051,1,-52.519
> select add #9
4172 atoms, 4196 bonds, 2 pseudobonds, 546 residues, 4 models selected
> select subtract #9
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #10,0.83921,-0.54381,-0.001679,131.5,0.54381,0.83921,0.001063,-53.122,0.00083101,-0.0018051,1,-36.385
> view matrix models
> #10,0.83921,-0.54381,-0.001679,136.6,0.54381,0.83921,0.001063,-70.459,0.00083101,-0.0018051,1,-39.272
> view matrix models
> #10,0.83921,-0.54381,-0.001679,140.24,0.54381,0.83921,0.001063,-71.001,0.00083101,-0.0018051,1,-46.138
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.006078, steps = 88
shifted from previous position = 3.54
rotated from previous position = 4.37 degrees
atoms outside contour = 1875, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.81758317 -0.57443401 0.03979113 140.06271469
0.57579818 0.81606371 -0.04996486 -58.42685075
-0.00377058 0.06376209 0.99795801 -55.55133212
Axis 0.09832346 0.03766159 0.99444160
Axis point 162.41612831 199.72567200 0.00000000
Rotation angle (degrees) 35.33321724
Shift along axis -43.67155309
> view matrix models
> #10,0.81758,-0.57443,0.039791,147.43,0.5758,0.81606,-0.049965,-51.14,-0.0037706,0.063762,0.99796,-33.501
> view matrix models
> #10,0.81758,-0.57443,0.039791,154.25,0.5758,0.81606,-0.049965,-46.873,-0.0037706,0.063762,0.99796,-28.668
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.004379, steps = 76
shifted from previous position = 4.44
rotated from previous position = 3.47 degrees
atoms outside contour = 1924, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.79300423 -0.60896300 0.01756025 170.27324607
0.60800276 0.78927765 -0.08586868 -37.20806647
0.03843094 0.07877091 0.99615170 -39.21759625
Axis 0.13404628 -0.01699250 0.99082937
Axis point 142.87853389 234.43537117 0.00000000
Rotation angle (degrees) 37.88762059
Shift along axis -15.40119225
> view matrix models
> #10,0.793,-0.60896,0.01756,162.96,0.608,0.78928,-0.085869,-42.072,0.038431,0.078771,0.99615,-35.416
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005142, steps = 680
shifted from previous position = 4.78
rotated from previous position = 28.7 degrees
atoms outside contour = 1913, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.98395740 -0.16400650 -0.07021181 80.67898504
0.16348441 0.98645816 -0.01315812 -18.22021479
0.07141904 0.00146849 0.99744532 -27.92955062
Axis 0.04095894 -0.39660911 0.91707338
Axis point 187.57892673 477.34387190 0.00000000
Rotation angle (degrees) 10.28544027
Shift along axis -15.08261850
> view matrix models
> #10,0.98396,-0.16401,-0.070212,87.581,0.16348,0.98646,-0.013158,-22.269,0.071419,0.0014685,0.99745,-26.056
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.83836,-0.3671,-0.40297,214.24,0.41018,0.91172,0.0228,-57.967,0.35903,-0.18441,0.91493,-25.497
> view matrix models
> #10,0.50322,-0.4782,-0.71979,353.57,0.65321,0.75581,-0.045466,-57.989,0.56577,-0.44729,0.6927,30.123
> view matrix models
> #10,0.058529,-0.99818,-0.014462,348.61,0.9852,0.055417,0.16223,-50.027,-0.16114,-0.023743,0.98665,17.033
> ui mousemode right "translate selected models"
> view matrix models
> #10,0.058529,-0.99818,-0.014462,358.99,0.9852,0.055417,0.16223,-49.778,-0.16114,-0.023743,0.98665,21.528
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.009554, steps = 284
shifted from previous position = 14.4
rotated from previous position = 12.5 degrees
atoms outside contour = 1679, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.04353449 -0.99905163 0.00076825 369.53457796
0.99859538 -0.04353783 -0.03019463 17.41611147
0.03019945 -0.00054733 0.99954374 -16.78940499
Axis 0.01483787 -0.01472971 0.99978141
Axis point 176.63661537 185.55566700 0.00000000
Rotation angle (degrees) 92.50830994
Shift along axis -11.55916447
> ui mousemode right "rotate selected models"
> view matrix models
> #10,-0.042719,-0.98269,0.18026,327.66,0.99463,-0.024801,0.10051,-13.384,-0.094299,0.18359,0.97847,-20.311
> view matrix models
> #10,-0.067365,-0.96497,0.25358,312.85,0.99304,-0.040225,0.11073,-13.032,-0.096654,0.25927,0.96096,-27.569
> ui mousemode right "translate selected models"
> view matrix models
> #10,-0.067365,-0.96497,0.25358,303.45,0.99304,-0.040225,0.11073,-23.665,-0.096654,0.25927,0.96096,-30.727
> view matrix models
> #10,-0.067365,-0.96497,0.25358,299.72,0.99304,-0.040225,0.11073,-20.331,-0.096654,0.25927,0.96096,-29.658
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.003177, steps = 80
shifted from previous position = 1.37
rotated from previous position = 1.92 degrees
atoms outside contour = 1981, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.05506788 -0.95917417 0.27740303 292.20904763
0.99191345 -0.02073523 0.12521086 -24.79923794
-0.11434701 0.28205489 0.95255961 -28.24239658
Axis 0.07857133 0.19624797 0.97740129
Axis point 158.26915705 131.33348962 0.00000000
Rotation angle (degrees) 93.53290452
Shift along axis -9.51170130
> view matrix models
> #10,-0.055068,-0.95917,0.2774,290.98,0.99191,-0.020735,0.12521,-25.425,-0.11435,0.28205,0.95256,-32.576
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.003789, steps = 188
shifted from previous position = 2.12
rotated from previous position = 8.94 degrees
atoms outside contour = 1947, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.09920450 -0.95570510 0.27710327 264.32602734
0.99079345 0.12065260 0.06141081 -33.13732338
-0.09212385 0.26845987 0.95887564 -36.18706616
Axis 0.10394042 0.18535520 0.97715907
Axis point 151.17782173 135.61072101 0.00000000
Rotation angle (degrees) 84.87284404
Shift along axis -14.02853762
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.19139,-0.94059,0.28047,246.67,0.97292,0.21954,0.07232,-47.665,-0.1296,0.25904,0.95713,-28.431
> view matrix models
> #10,-0.24481,-0.94236,0.22808,327.63,0.96792,-0.22384,0.1141,11.144,-0.056474,0.2487,0.96693,-40.615
> ui mousemode right "translate selected models"
> view matrix models
> #10,-0.24481,-0.94236,0.22808,332.18,0.96792,-0.22384,0.1141,11.989,-0.056474,0.2487,0.96693,-38.32
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.004351, steps = 184
shifted from previous position = 3.24
rotated from previous position = 17.2 degrees
atoms outside contour = 1926, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.51246118 -0.82285765 0.24553784 351.09547743
0.85473101 -0.46129345 0.23799842 40.22674115
-0.08257382 0.33183376 0.93971694 -43.42572147
Axis 0.05481202 0.19165983 0.97992967
Axis point 164.32008129 125.68735784 0.00000000
Rotation angle (degrees) 121.13249336
Shift along axis -15.60004851
> ui mousemode right "rotate selected models"
> view matrix models
> #10,-0.067627,-0.98334,0.16874,321.6,0.98639,-0.040493,0.15935,-27.202,-0.14986,0.17722,0.97269,-16.542
> view matrix models
> #10,-0.015887,-0.9929,0.11788,325.97,0.99883,-0.010366,0.047302,-9.2275,-0.045745,0.11849,0.9919,-28.372
> ui mousemode right "translate selected models"
> view matrix models
> #10,-0.015887,-0.9929,0.11788,332.73,0.99883,-0.010366,0.047302,-7.0295,-0.045745,0.11849,0.9919,-26.67
> view matrix models
> #10,-0.015887,-0.9929,0.11788,334.23,0.99883,-0.010366,0.047302,-6.4833,-0.045745,0.11849,0.9919,-26.704
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005972, steps = 132
shifted from previous position = 1.88
rotated from previous position = 2.62 degrees
atoms outside contour = 1865, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.05607084 -0.99376862 0.09633267 346.25612771
0.99744802 -0.05148335 0.04946622 -2.06034848
-0.04419845 0.09886045 0.99411926 -25.01312768
Axis 0.02473693 0.07037885 0.99721357
Axis point 173.86345350 164.07514952 0.00000000
Rotation angle (degrees) 93.25141611
Shift along axis -16.52312014
> view matrix models
> #10,-0.056071,-0.99377,0.096333,346.71,0.99745,-0.051483,0.049466,-1.6769,-0.044198,0.09886,0.99412,-22.979
> view matrix models
> #10,-0.056071,-0.99377,0.096333,345.87,0.99745,-0.051483,0.049466,-1.9353,-0.044198,0.09886,0.99412,-24.018
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.00598, steps = 184
shifted from previous position = 1.21
rotated from previous position = 1.32 degrees
atoms outside contour = 1870, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.07796529 -0.99276623 0.09130511 351.01050036
0.99574829 -0.07303687 0.05613342 0.12818678
-0.04905872 0.09529337 0.99423962 -23.66654831
Axis 0.01964040 0.07039850 0.99732558
Axis point 175.13398292 163.73456346 0.00000000
Rotation angle (degrees) 94.49552704
Shift along axis -16.70024324
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005979, steps = 64
shifted from previous position = 0.0586
rotated from previous position = 0.451 degrees
atoms outside contour = 1868, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.08562026 -0.99217235 0.09090216 352.26327543
0.99503416 -0.08050451 0.05853248 0.86741850
-0.05075627 0.09546231 0.99413819 -23.38604066
Axis 0.01853357 0.07109256 0.99729753
Axis point 175.40284287 163.43179598 0.00000000
Rotation angle (degrees) 94.93314517
Shift along axis -16.73247641
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.036524,-0.99823,0.046952,343.41,0.99875,0.034856,-0.035862,3.4539,0.034162,0.048204,0.99825,-30.605
> ui mousemode right "translate selected models"
> view matrix models
> #10,0.036524,-0.99823,0.046952,345.96,0.99875,0.034856,-0.035862,5.3279,0.034162,0.048204,0.99825,-29.295
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01551, steps = 104
shifted from previous position = 2.96
rotated from previous position = 10.5 degrees
atoms outside contour = 1389, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.13813968 -0.99041175 -0.00141216 384.58588147
0.99041090 -0.13813652 -0.00213142 27.35866323
0.00191591 -0.00169305 0.99999673 -17.34805812
Axis 0.00022130 -0.00168014 0.99999856
Axis point 180.40369954 181.00058238 0.00000000
Rotation angle (degrees) 97.94021488
Shift along axis -17.30888952
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01551, steps = 40
shifted from previous position = 0.0105
rotated from previous position = 0.0747 degrees
atoms outside contour = 1383, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.13937586 -0.99023853 -0.00142503 384.76046070
0.99023835 -0.13937330 -0.00175892 27.48747765
0.00154314 -0.00165627 0.99999744 -17.30403526
Axis 0.00005183 -0.00149871 0.99999888
Axis point 180.44716904 180.93035717 0.00000000
Rotation angle (degrees) 98.01173177
Shift along axis -17.32526882
> combine #8 #11
> select subtract #10
Nothing selected
> select add #11
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> color #11 #fa900bff
> view matrix models
> #11,0.83921,-0.54381,-0.001679,127.81,0.54381,0.83921,0.001063,-62.498,0.00083101,-0.0018051,1,-74.65
> view matrix models
> #11,0.83921,-0.54381,-0.001679,129.69,0.54381,0.83921,0.001063,-55.838,0.00083101,-0.0018051,1,-60.331
> view matrix models
> #11,0.83921,-0.54381,-0.001679,140.33,0.54381,0.83921,0.001063,-68.187,0.00083101,-0.0018051,1,-67.579
> view matrix models
> #11,0.83921,-0.54381,-0.001679,142.45,0.54381,0.83921,0.001063,-71.508,0.00083101,-0.0018051,1,-47.577
> view matrix models
> #11,0.83921,-0.54381,-0.001679,141.22,0.54381,0.83921,0.001063,-71.99,0.00083101,-0.0018051,1,-44.845
> fitmap #11 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.006076, steps = 96
shifted from previous position = 4.89
rotated from previous position = 4.43 degrees
atoms outside contour = 1875, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.81657423 -0.57583658 0.04023395 140.33745160
0.57722589 0.81506279 -0.04982901 -58.52041925
-0.00409983 0.06391316 0.99794704 -55.51684004
Axis 0.09809531 0.03823504 0.99444225
Axis point 162.38301947 199.42630799 0.00000000
Rotation angle (degrees) 35.43319678
Shift along axis -43.67937652
> ui mousemode right "rotate selected models"
> view matrix models
> #11,0.52662,-0.82285,0.21353,185.86,0.84448,0.53521,-0.020263,-65.014,-0.097608,0.19099,0.97673,-55.282
> ui mousemode right "translate selected models"
> view matrix models
> #11,0.52662,-0.82285,0.21353,176.37,0.84448,0.53521,-0.020263,-66.585,-0.097608,0.19099,0.97673,-58.076
> view matrix models
> #11,0.52662,-0.82285,0.21353,178.5,0.84448,0.53521,-0.020263,-61.336,-0.097608,0.19099,0.97673,-55.023
> ui mousemode right "rotate selected models"
> view matrix models
> #11,0.45944,-0.85528,0.23963,188.37,0.86075,0.49529,0.11744,-87.996,-0.21913,0.1523,0.96374,-27.035
> view matrix models
> #11,0.40917,-0.90158,0.14047,225.05,0.89858,0.42489,0.10968,-81.637,-0.15857,0.08135,0.98399,-30.33
> view matrix models
> #11,0.41704,-0.90286,0.10453,231.85,0.86747,0.42972,0.25067,-108.27,-0.27124,-0.013862,0.96241,6.6926
> ui mousemode right "translate selected models"
> view matrix models
> #11,0.41704,-0.90286,0.10453,241.1,0.86747,0.42972,0.25067,-121.85,-0.27124,-0.013862,0.96241,2.9249
> fitmap #11 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005896, steps = 348
shifted from previous position = 11.5
rotated from previous position = 11.8 degrees
atoms outside contour = 1870, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.34231509 -0.93025377 0.13209204 250.16002095
0.93230971 0.35375238 0.07521875 -72.48407893
-0.11670040 0.09740217 0.98837940 -45.66632024
Axis 0.01180448 0.13239012 0.99112739
Axis point 172.63441708 147.52283588 0.00000000
Rotation angle (degrees) 69.98760426
Shift along axis -51.90430775
> view matrix models
> #11,0.34232,-0.93025,0.13209,250.65,0.93231,0.35375,0.075219,-71.924,-0.1167,0.097402,0.98838,-38.685
> view matrix models
> #11,0.34232,-0.93025,0.13209,249.85,0.93231,0.35375,0.075219,-72.636,-0.1167,0.097402,0.98838,-38.466
> fitmap #11 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.006467, steps = 144
shifted from previous position = 2.96
rotated from previous position = 3.19 degrees
atoms outside contour = 1862, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.29844642 -0.94580246 0.12801345 261.00076529
0.95037853 0.30683524 0.05131068 -60.94323024
-0.08780880 0.10634775 0.99044423 -45.93186702
Axis 0.02882703 0.11304227 0.99317191
Axis point 169.39975677 151.67490776 0.00000000
Rotation angle (degrees) 72.67070827
Shift along axis -44.98352332
> view matrix models
> #11,0.29845,-0.9458,0.12801,258.8,0.95038,0.30684,0.051311,-31.302,-0.087809,0.10635,0.99044,-16.122
> view matrix models
> #11,0.29845,-0.9458,0.12801,259.69,0.95038,0.30684,0.051311,-58.838,-0.087809,0.10635,0.99044,-44.18
> fitmap #11 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.006465, steps = 56
shifted from previous position = 3.03
rotated from previous position = 0.7 degrees
atoms outside contour = 1868, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.28685521 -0.94921448 0.12925156 263.08834283
0.95377706 0.29560265 0.05411460 -60.36561896
-0.08957347 0.10775412 0.99013416 -45.80581919
Axis 0.02799144 0.11419247 0.99306423
Axis point 169.51816585 151.13280022 0.00000000
Rotation angle (degrees) 73.36366733
Shift along axis -45.01719708
> ui mousemode right "rotate selected models"
> view matrix models
> #11,0.27127,-0.95999,0.06945,280.28,0.94821,0.27894,0.15199,-78.367,-0.16528,0.024623,0.98594,-20.281
> view matrix models
> #11,0.46519,-0.88166,0.079181,235.51,0.88293,0.46854,0.029929,-70.026,-0.063487,0.055989,0.99641,-43.478
> view matrix models
> #11,0.45154,-0.89107,0.045845,246.39,0.89186,0.45226,0.0062626,-63.8,-0.026315,0.03806,0.99893,-47.213
> ui mousemode right "translate selected models"
> view matrix models
> #11,0.45154,-0.89107,0.045845,248.33,0.89186,0.45226,0.0062626,-62.235,-0.026315,0.03806,0.99893,-46.991
> fitmap #11 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0153, steps = 68
shifted from previous position = 3.5
rotated from previous position = 3.51 degrees
atoms outside contour = 1416, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41812557 -0.90838757 -0.00174010 269.65857217
0.90838629 0.41812833 -0.00174675 -58.40077410
0.00231431 -0.00085032 0.99999696 -45.70947283
Axis 0.00049342 -0.00223165 0.99999739
Axis point 180.50582186 181.25443343 0.00000000
Rotation angle (degrees) 65.28370542
Shift along axis -45.44596915
> fitmap #11 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0153, steps = 28
shifted from previous position = 0.0118
rotated from previous position = 0.0942 degrees
atoms outside contour = 1418, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41668703 -0.90904881 -0.00147520 269.92917762
0.90904806 0.41668895 -0.00139659 -58.36709490
0.00188427 -0.00075909 0.99999794 -45.64439480
Axis 0.00035064 -0.00184779 0.99999823
Axis point 180.51849052 181.11935409 0.00000000
Rotation angle (degrees) 65.37440291
Shift along axis -45.44181562
> combine #11 #12
> select subtract #11
Nothing selected
> select add #12
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> color #12 #fdcea1ff
> color #12 #fdd0a2ff
> view matrix models
> #12,0.41669,-0.90905,-0.0014752,275.52,0.90905,0.41669,-0.0013966,-53.045,0.0018843,-0.00075909,1,-41.899
> color #12 #fddf92ff
> color #12 #907f53ff
> view matrix models
> #12,0.41669,-0.90905,-0.0014752,260.15,0.90905,0.41669,-0.0013966,-21.387,0.0018843,-0.00075909,1,-34.455
> view matrix models
> #12,0.41669,-0.90905,-0.0014752,261.69,0.90905,0.41669,-0.0013966,-40.973,0.0018843,-0.00075909,1,-33.174
> view matrix models
> #12,0.41669,-0.90905,-0.0014752,271.34,0.90905,0.41669,-0.0013966,-38.435,0.0018843,-0.00075909,1,-58.847
> view matrix models
> #12,0.41669,-0.90905,-0.0014752,273.93,0.90905,0.41669,-0.0013966,-34.549,0.0018843,-0.00075909,1,-58.58
> view matrix models
> #12,0.41669,-0.90905,-0.0014752,271.78,0.90905,0.41669,-0.0013966,-26.551,0.0018843,-0.00075909,1,-58.665
> view matrix models
> #12,0.41669,-0.90905,-0.0014752,275.95,0.90905,0.41669,-0.0013966,-44.809,0.0018843,-0.00075909,1,-58.409
> fitmap #12 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.004878, steps = 288
shifted from previous position = 4.43
rotated from previous position = 12.6 degrees
atoms outside contour = 1916, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.59784117 -0.79965383 -0.05603292 241.65333054
0.80057094 0.59916810 -0.00915175 -56.49525996
0.04089137 -0.03938704 0.99838698 -55.49664326
Axis -0.01885649 -0.06044762 0.99799325
Axis point 180.11996264 210.27923471 0.00000000
Rotation angle (degrees) 53.29478498
Shift along axis -56.52700372
> ui mousemode right "rotate selected models"
> view matrix models
> #12,0.57919,-0.81122,0.080361,216.53,0.81104,0.56351,-0.15704,-20.405,0.08211,0.15613,0.98432,-88.576
> view matrix models
> #12,0.5452,-0.7788,0.31022,166.73,0.81615,0.40858,-0.40862,57.286,0.19148,0.47596,0.85837,-126.82
> view matrix models
> #12,0.51124,-0.85796,0.050323,240.96,0.85391,0.50046,-0.14274,-20.788,0.097278,0.11594,0.98848,-85.806
> ui mousemode right "translate selected models"
> view matrix models
> #12,0.51124,-0.85796,0.050323,254.16,0.85391,0.50046,-0.14274,-20.694,0.097278,0.11594,0.98848,-86.063
> fitmap #12 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.006929, steps = 160
shifted from previous position = 3.73
rotated from previous position = 6.46 degrees
atoms outside contour = 1821, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.43841518 -0.89775409 0.04277531 270.20521183
0.88182925 0.42046526 -0.21350912 2.15185970
0.17369316 0.13132615 0.97600417 -95.46542637
Axis 0.18974027 -0.07203552 0.97918819
Axis point 145.06870085 219.18601655 0.00000000
Rotation angle (degrees) 65.32678584
Shift along axis -42.36481828
> ui mousemode right "rotate selected models"
> view matrix models
> #12,0.36092,-0.92627,-0.10841,319.89,0.92707,0.36899,-0.066261,-29.442,0.10138,-0.076585,0.9919,-55.973
> ui mousemode right "translate selected models"
> view matrix models
> #12,0.36092,-0.92627,-0.10841,317.2,0.92707,0.36899,-0.066261,-29.19,0.10138,-0.076585,0.9919,-61.851
> view matrix models
> #12,0.36092,-0.92627,-0.10841,318.31,0.92707,0.36899,-0.066261,-26.441,0.10138,-0.076585,0.9919,-67.227
> view matrix models
> #12,0.36092,-0.92627,-0.10841,317.92,0.92707,0.36899,-0.066261,-25.488,0.10138,-0.076585,0.9919,-68.399
> fitmap #12 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.009733, steps = 196
shifted from previous position = 1.79
rotated from previous position = 23.1 degrees
atoms outside contour = 1684, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.01451756 -0.99989382 -0.00126465 365.67346293
0.99906178 -0.01445385 -0.04082468 15.29663570
0.04080206 -0.00185614 0.99916553 -69.80594902
Axis 0.01948643 -0.02103569 0.99958880
Axis point 176.63168778 187.72457334 0.00000000
Rotation angle (degrees) 90.85390725
Shift along axis -62.97334880
> view matrix models
> #12,-0.014518,-0.99989,-0.0012646,367.03,0.99906,-0.014454,-0.040825,15.826,0.040802,-0.0018561,0.99917,-74.818
> fitmap #12 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0152, steps = 72
shifted from previous position = 0.421
rotated from previous position = 7.71 degrees
atoms outside contour = 1420, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14271734 -0.98976289 -0.00108614 385.23498414
0.98976203 -0.14271515 -0.00187556 28.27250384
0.00170135 -0.00134269 0.99999765 -69.03468274
Axis 0.00026919 -0.00140816 0.99999897
Axis point 180.42473254 180.93129368 0.00000000
Rotation angle (degrees) 98.20512224
Shift along axis -68.97072331
> view matrix models
> #12,-0.14272,-0.98976,-0.0010861,382.63,0.98976,-0.14272,-0.0018756,30.527,0.0017013,-0.0013427,1,-66.248
> view matrix models
> #12,-0.14272,-0.98976,-0.0010861,384.64,0.98976,-0.14272,-0.0018756,28.858,0.0017013,-0.0013427,1,-67.055
> fitmap #12 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0152, steps = 68
shifted from previous position = 2.15
rotated from previous position = 0.143 degrees
atoms outside contour = 1411, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14504147 -0.98942497 -0.00109937 385.55904562
0.98942520 -0.14504036 -0.00103048 28.48597091
0.00086013 -0.00123721 0.99999887 -68.91162805
Axis -0.00010447 -0.00099022 0.99999950
Axis point 180.49812408 180.78581835 0.00000000
Rotation angle (degrees) 98.33968130
Shift along axis -68.98008024
> fitmap #12 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0152, steps = 28
shifted from previous position = 0.0184
rotated from previous position = 0.0213 degrees
atoms outside contour = 1411, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14485014 -0.98945294 -0.00114753 385.53088353
0.98945292 -0.14484858 -0.00134371 28.51938071
0.00116331 -0.00133006 0.99999844 -68.93174834
Axis 0.00000689 -0.00116774 0.99999932
Axis point 180.47632300 180.82013677 0.00000000
Rotation angle (degrees) 98.32860100
Shift along axis -68.96234661
> select clear
> combine #10 #13
> color #13 #5cfba5ff
> select add #13
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #13,-0.13938,-0.99024,-0.001425,390.74,0.99024,-0.13937,-0.0017589,35.776,0.0015431,-0.0016563,1,-16.172
> view matrix models
> #13,-0.13938,-0.99024,-0.001425,397.94,0.99024,-0.13937,-0.0017589,50.935,0.0015431,-0.0016563,1,-29.611
> view matrix models
> #13,-0.13938,-0.99024,-0.001425,393.8,0.99024,-0.13937,-0.0017589,37.23,0.0015431,-0.0016563,1,-38.821
> ui mousemode right "rotate selected models"
> view matrix models
> #13,-0.22322,-0.97418,-0.033727,411.74,0.96925,-0.2255,0.098514,31.672,-0.10358,-0.010699,0.99456,-19.579
> view matrix models
> #13,-0.31518,-0.93472,0.16423,377.05,0.94739,-0.32007,-0.0035591,71.795,0.055893,0.15447,0.98642,-68.123
> view matrix models
> #13,-0.29193,-0.9562,-0.021388,417.22,0.94427,-0.2917,0.15256,33.841,-0.15211,0.02434,0.98806,-15.761
> view matrix models
> #13,-0.1293,-0.98994,0.057462,379.28,0.98969,-0.13244,-0.054613,47.829,0.061673,0.049808,0.99685,-55.471
> view matrix models
> #13,-0.15668,-0.98765,-0.00041457,395.94,0.98737,-0.15665,0.023669,34.739,-0.023442,0.0032993,0.99972,-35.545
> view matrix models
> #13,-0.3085,-0.94755,0.08349,395.6,0.94964,-0.30173,0.084514,49.392,-0.05489,0.10536,0.99292,-44.525
> view matrix models
> #13,-0.095329,-0.9832,0.15565,351.38,0.97209,-0.12562,-0.19813,80.984,0.21436,0.13242,0.96774,-85.847
> view matrix models
> #13,-0.44061,-0.89769,0.0045125,426.29,0.89694,-0.44003,0.043279,87.724,-0.036866,0.023117,0.99905,-36.271
> view matrix models
> #13,-0.55642,-0.8284,-0.064412,449.26,0.81487,-0.5592,0.1526,94.886,-0.16243,0.032424,0.98619,-14.937
> view matrix models
> #13,-0.59514,-0.79108,-0.1414,466.59,0.774,-0.61159,0.16396,106.82,-0.21619,-0.011864,0.97628,2.4696
> view matrix models
> #13,-0.48388,-0.87501,-0.015016,434,0.8698,-0.48275,0.10194,85.669,-0.096448,0.036266,0.99468,-27.849
> ui mousemode right "translate selected models"
> view matrix models
> #13,-0.48388,-0.87501,-0.015016,438.92,0.8698,-0.48275,0.10194,87.642,-0.096448,0.036266,0.99468,-31.876
> view matrix models
> #13,-0.48388,-0.87501,-0.015016,431.15,0.8698,-0.48275,0.10194,88.198,-0.096448,0.036266,0.99468,-28.603
> fitmap #13 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.006426, steps = 80
shifted from previous position = 3.06
rotated from previous position = 2.52 degrees
atoms outside contour = 1852, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.48533838 -0.87385507 0.02870504 420.28345409
0.87143258 -0.48080230 0.09713087 88.84878531
-0.07107685 0.07215584 0.99485759 -40.50938727
Axis -0.01428519 0.05707314 0.99826779
Axis point 182.97112914 169.27109588 0.00000000
Rotation angle (degrees) 119.05451322
Shift along axis -41.37216604
> ui mousemode right "rotate selected models"
> view matrix models
> #13,-0.55359,-0.83217,-0.031926,438.07,0.82013,-0.55144,0.15264,95.546,-0.14463,0.058319,0.98777,-25.189
> view matrix models
> #13,-0.58465,-0.80934,-0.056188,444.84,0.80611,-0.58734,0.072197,120.81,-0.091433,-0.003084,0.99581,-26.09
> ui mousemode right "translate selected models"
> view matrix models
> #13,-0.58465,-0.80934,-0.056188,445.76,0.80611,-0.58734,0.072197,124.82,-0.091433,-0.003084,0.99581,-25.914
> view matrix models
> #13,-0.58465,-0.80934,-0.056188,447.06,0.80611,-0.58734,0.072197,125.52,-0.091433,-0.003084,0.99581,-25.715
> fitmap #13 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01542, steps = 84
shifted from previous position = 5.01
rotated from previous position = 7.2 degrees
atoms outside contour = 1426, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.65254254 -0.75775197 0.00042672 434.89231337
0.75774784 -0.65254066 -0.00298275 162.45268924
0.00253863 -0.00162303 0.99999546 -40.94217263
Axis 0.00089721 -0.00139354 0.99999863
Axis point 180.23229309 180.91324568 0.00000000
Rotation angle (degrees) 130.73367430
Shift along axis -40.77831174
> view matrix models
> #13,-0.65254,-0.75775,0.00042672,429.72,0.75775,-0.65254,-0.0029827,162.3,0.0025386,-0.001623,1,-34.114
> view matrix models
> #13,-0.65254,-0.75775,0.00042672,435.26,0.75775,-0.65254,-0.0029827,162.95,0.0025386,-0.001623,1,-39.883
> fitmap #13 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01543, steps = 64
shifted from previous position = 1.23
rotated from previous position = 0.0986 degrees
atoms outside contour = 1427, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.65377561 -0.75668844 0.00025641 434.95874847
0.75668577 -0.65377414 -0.00245364 162.68609251
0.00202428 -0.00141010 0.99999696 -40.89411002
Axis 0.00068954 -0.00116816 0.99999908
Axis point 180.28570918 180.83369070 0.00000000
Rotation angle (degrees) 130.82693472
Shift along axis -40.78419355
> fitmap #13 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01543, steps = 40
shifted from previous position = 0.0172
rotated from previous position = 0.0082 degrees
atoms outside contour = 1430, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.65384803 -0.75662588 0.00016123 434.99221686
0.75662326 -0.65384630 -0.00250108 162.71261932
0.00199780 -0.00151333 0.99999686 -40.86225002
Axis 0.00065273 -0.00121366 0.99999905
Axis point 180.30073471 180.84078338 0.00000000
Rotation angle (degrees) 130.83241280
Shift along axis -40.77575533
> fitmap #13 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01543, steps = 36
shifted from previous position = 0.00381
rotated from previous position = 0.00735 degrees
atoms outside contour = 1431, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.65377633 -0.75668783 0.00020317 434.97885633
0.75668499 -0.65377457 -0.00257679 162.71046619
0.00208265 -0.00153091 0.99999666 -40.87463391
Axis 0.00069109 -0.00124191 0.99999899
Axis point 180.29094142 180.84887818 0.00000000
Rotation angle (degrees) 130.82698946
Shift along axis -40.77605594
> select #6
2 models selected
> select clear
> combine #13 #14
> select add #14
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> color #14 #5d9df8ff
> view matrix models
> #14,-0.65378,-0.75669,0.00020317,429.14,0.75668,-0.65377,-0.0025768,160.04,0.0020826,-0.0015309,1,-41.378
> view matrix models
> #14,-0.65378,-0.75669,0.00020317,427.91,0.75668,-0.65377,-0.0025768,166.84,0.0020826,-0.0015309,1,-50.434
> view matrix models
> #14,-0.65378,-0.75669,0.00020317,428.77,0.75668,-0.65377,-0.0025768,159.09,0.0020826,-0.0015309,1,-82.286
> view matrix models
> #14,-0.65378,-0.75669,0.00020317,433.19,0.75668,-0.65377,-0.0025768,161.01,0.0020826,-0.0015309,1,-86.63
> fitmap #14 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.009575, steps = 108
shifted from previous position = 1.75
rotated from previous position = 5.99 degrees
atoms outside contour = 1708, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.57487439 -0.81804626 0.01788198 427.45471883
0.81754655 -0.57514946 -0.02864840 146.12543514
0.03372053 -0.00184988 0.99942959 -92.24899855
Axis 0.01638162 -0.00968192 0.99981894
Axis point 176.75755505 183.97878147 0.00000000
Rotation angle (degrees) 125.12044289
Shift along axis -86.64466852
> view matrix models
> #14,-0.57487,-0.81805,0.017882,427.7,0.81755,-0.57515,-0.028648,146.6,0.033721,-0.0018499,0.99943,-96.339
> fitmap #14 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01479, steps = 68
shifted from previous position = 1.18
rotated from previous position = 5.97 degrees
atoms outside contour = 1467, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.65371770 -0.75673842 0.00037247 434.95554336
0.75673243 -0.65371434 -0.00368724 163.13177019
0.00303377 -0.00212855 0.99999313 -92.60778167
Axis 0.00102987 -0.00175840 0.99999792
Axis point 180.23827365 181.02362112 0.00000000
Rotation angle (degrees) 130.82262338
Shift along axis -92.44649068
> fitmap #14 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01479, steps = 28
shifted from previous position = 0.0145
rotated from previous position = 0.0678 degrees
atoms outside contour = 1466, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.65456110 -0.75600905 0.00028293 434.98815166
0.75600435 -0.65455826 -0.00330229 163.30085431
0.00268175 -0.00194766 0.99999451 -92.58316743
Axis 0.00089591 -0.00158651 0.99999834
Axis point 180.26102267 180.97416238 0.00000000
Rotation angle (degrees) 130.88647901
Shift along axis -92.45238126
> fitmap #14 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01479, steps = 28
shifted from previous position = 0.0101
rotated from previous position = 0.0302 degrees
atoms outside contour = 1466, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.65489405 -0.75572069 0.00012939 435.02833673
0.75571691 -0.65489130 -0.00305688 163.33646247
0.00239489 -0.00190415 0.99999532 -92.53818609
Axis 0.00076267 -0.00149890 0.99999859
Axis point 180.28665159 180.94454816 0.00000000
Rotation angle (degrees) 130.91169005
Shift along axis -92.45109625
> select clear
> combine #14 #15
> color #15 #001afaff
> select add #15
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #15,-0.65489,-0.75572,0.00012939,429.61,0.75572,-0.65489,-0.0030569,168.87,0.0023949,-0.0019041,1,-83.202
> view matrix models
> #15,-0.65489,-0.75572,0.00012939,411.49,0.75572,-0.65489,-0.0030569,175.3,0.0023949,-0.0019041,1,-32.531
> view matrix models
> #15,-0.65489,-0.75572,0.00012939,443.76,0.75572,-0.65489,-0.0030569,179.13,0.0023949,-0.0019041,1,-35.537
> view matrix models
> #15,-0.65489,-0.75572,0.00012939,434.87,0.75572,-0.65489,-0.0030569,178.64,0.0023949,-0.0019041,1,-18.154
> ui mousemode right "rotate selected models"
> view matrix models
> #15,-0.769,-0.63804,-0.039394,443.8,0.61625,-0.72353,-0.31102,278.55,0.16994,-0.26345,0.94959,5.8985
> view matrix models
> #15,-0.96474,-0.11945,-0.23453,439,0.13333,-0.99009,-0.044197,337.19,-0.22692,-0.073909,0.9711,35.467
> view matrix models
> #15,-0.75645,0.56239,-0.33393,324.41,-0.61489,-0.7855,0.070023,399.97,-0.22292,0.2583,0.93999,-8.6813
> ui mousemode right "translate selected models"
> view matrix models
> #15,-0.75645,0.56239,-0.33393,320.14,-0.61489,-0.7855,0.070023,401.26,-0.22292,0.2583,0.93999,0.30825
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005121, steps = 104
shifted from previous position = 6.02
rotated from previous position = 2.02 degrees
atoms outside contour = 1903, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.77845615 0.54356952 -0.31390795 318.18019084
-0.59209607 -0.80191465 0.07971913 399.12722474
-0.20839450 0.24792151 0.94610077 -6.07534426
Axis 0.14589596 -0.09152062 -0.98505753
Axis point 223.14167276 148.98542872 0.00000000
Rotation angle (degrees) 144.79901787
Shift along axis 15.87739562
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005124, steps = 44
shifted from previous position = 0.0707
rotated from previous position = 0.517 degrees
atoms outside contour = 1901, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.78400131 0.53693045 -0.31152470 319.54998244
-0.58501640 -0.80691352 0.08152543 398.33275173
-0.20760001 0.24616310 0.94673437 -6.12378768
Axis 0.14458205 -0.09126493 -0.98527496
Axis point 222.72008055 149.14229636 0.00000000
Rotation angle (degrees) 145.29458434
Shift along axis 15.88099664
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005133, steps = 48
shifted from previous position = 0.0761
rotated from previous position = 0.423 degrees
atoms outside contour = 1903, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.78852207 0.53152337 -0.30937981 320.62061793
-0.57925533 -0.81088551 0.08323432 397.60068565
-0.20663061 0.24484200 0.94728886 -6.24399082
Axis 0.14337519 -0.09115709 -0.98546128
Axis point 222.34439659 149.23854177 0.00000000
Rotation angle (degrees) 145.69604122
Shift along axis 15.87813433
> ui mousemode right "rotate selected models"
> view matrix models
> #15,-0.62093,0.63683,-0.45705,310.38,-0.71673,-0.69735,0.0020727,419.98,-0.31741,0.32887,0.88944,11.265
> view matrix models
> #15,-0.80397,0.47272,-0.36079,343.23,-0.52886,-0.84579,0.070329,397.71,-0.27191,0.24735,0.92999,7.5197
> view matrix models
> #15,-0.81122,0.41644,-0.41048,363.77,-0.52894,-0.82187,0.21153,363.22,-0.24928,0.38872,0.887,-8.0788
> view matrix models
> #15,-0.82664,0.44064,-0.35,349.32,-0.52386,-0.82973,0.19264,367.73,-0.20552,0.3426,0.91673,-14.541
> view matrix models
> #15,-0.83143,0.4955,-0.25141,320.2,-0.53688,-0.83299,0.13377,383.17,-0.14314,0.24619,0.95859,-18.998
> ui mousemode right "translate selected models"
> view matrix models
> #15,-0.83143,0.4955,-0.25141,316,-0.53688,-0.83299,0.13377,376.41,-0.14314,0.24619,0.95859,-19.193
> view matrix models
> #15,-0.83143,0.4955,-0.25141,320.52,-0.53688,-0.83299,0.13377,379.65,-0.14314,0.24619,0.95859,-20.219
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005767, steps = 196
shifted from previous position = 2.2
rotated from previous position = 15.1 degrees
atoms outside contour = 1882, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.94183377 0.27294764 -0.19608348 358.54549760
-0.30015240 -0.94561100 0.12541283 362.90534903
-0.15118756 0.17697297 0.97253426 -10.93632536
Axis 0.08933367 -0.07778717 -0.99295954
Axis point 205.80615042 155.36122534 0.00000000
Rotation angle (degrees) 163.22693237
Shift along axis 14.66013236
> ui mousemode right "rotate selected models"
> view matrix models
> #15,-0.95046,0.25044,-0.18411,360.71,-0.26937,-0.9592,0.085826,368.74,-0.15511,0.13117,0.97915,-4.8237
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01541, steps = 172
shifted from previous position = 3.5
rotated from previous position = 33.7 degrees
atoms outside contour = 1406, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.95909560 -0.28308237 0.00002496 404.57865022
0.28308209 -0.95909477 -0.00132637 302.90058101
0.00039941 -0.00126505 0.99999912 -12.46340564
Axis 0.00010831 -0.00066138 0.99999978
Axis point 180.40657414 180.67635655 0.00000000
Rotation angle (degrees) 163.55574787
Shift along axis -12.61991658
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01541, steps = 28
shifted from previous position = 0.00916
rotated from previous position = 0.159 degrees
atoms outside contour = 1409, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.95834815 -0.28560123 0.00087474 404.66476513
0.28559966 -0.95834771 -0.00158435 302.44950824
0.00129079 -0.00126853 0.99999836 -12.60864137
Axis 0.00055290 -0.00072839 0.99999958
Axis point 180.28229783 180.72831890 0.00000000
Rotation angle (degrees) 163.40524953
Shift along axis -12.60519879
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01541, steps = 28
shifted from previous position = 0.0177
rotated from previous position = 0.0324 degrees
atoms outside contour = 1409, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.95819614 -0.28611020 0.00105144 404.66263623
0.28610828 -0.95819584 -0.00166865 302.36126196
0.00148490 -0.00129807 0.99999806 -12.63837959
Axis 0.00064762 -0.00075752 0.99999950
Axis point 180.24730920 180.73879762 0.00000000
Rotation angle (degrees) 163.37482667
Shift along axis -12.60534785
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01541, steps = 28
shifted from previous position = 0.0163
rotated from previous position = 0.0431 degrees
atoms outside contour = 1412, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.95840748 -0.28540195 0.00090922 404.62924917
0.28540024 -0.95840700 -0.00165098 302.49574101
0.00134260 -0.00132282 0.99999822 -12.59967698
Axis 0.00057491 -0.00075924 0.99999955
Axis point 180.27739544 180.72718716 0.00000000
Rotation angle (degrees) 163.41716699
Shift along axis -12.59671107
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01541, steps = 28
shifted from previous position = 0.0276
rotated from previous position = 0.0666 degrees
atoms outside contour = 1408, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.95808205 -0.28649169 0.00113641 404.68356052
0.28648979 -0.95808198 -0.00158656 302.26874760
0.00154331 -0.00119449 0.99999810 -12.67554724
Axis 0.00068427 -0.00071015 0.99999951
Axis point 180.23400109 180.73553329 0.00000000
Rotation angle (degrees) 163.35201376
Shift along axis -12.61328219
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01541, steps = 28
shifted from previous position = 0.0199
rotated from previous position = 0.0778 degrees
atoms outside contour = 1408, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.95846392 -0.28521242 0.00089103 404.60991386
0.28521079 -0.95846346 -0.00161447 302.52937505
0.00131449 -0.00129328 0.99999830 -12.60603684
Axis 0.00056307 -0.00074236 0.99999957
Axis point 180.28045959 180.72226451 0.00000000
Rotation angle (degrees) 163.42849490
Shift along axis -12.60279113
> combine #15 #16
> color #16 #8882fbff
> select subtract #15
Nothing selected
> select add #16
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #16,-0.91363,-0.21533,0.34485,311.67,0.29373,-0.93605,0.19371,255.05,0.28108,0.27827,0.91845,-81.514
> ui mousemode right "translate selected models"
> view matrix models
> #16,-0.91363,-0.21533,0.34485,317.84,0.29373,-0.93605,0.19371,249.2,0.28108,0.27827,0.91845,-106.01
> ui mousemode right "rotate selected models"
> view matrix models
> #16,-0.9806,-0.19584,-0.008607,402.83,0.19207,-0.96862,0.15777,278.13,-0.039235,0.15305,0.98744,-51.292
> ui mousemode right "translate selected models"
> view matrix models
> #16,-0.9806,-0.19584,-0.008607,394.91,0.19207,-0.96862,0.15777,280.19,-0.039235,0.15305,0.98744,-78.494
> view matrix models
> #16,-0.9806,-0.19584,-0.008607,396.7,0.19207,-0.96862,0.15777,289.21,-0.039235,0.15305,0.98744,-78.024
> fitmap #16 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.0152, steps = 116
shifted from previous position = 3.93
rotated from previous position = 10.4 degrees
atoms outside contour = 1419, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.96014162 -0.27951260 0.00088378 403.88514624
0.27951159 -0.96014168 -0.00110890 303.72978376
0.00115851 -0.00081767 0.99999899 -64.31605291
Axis 0.00052095 -0.00049144 0.99999974
Axis point 180.30595610 180.64807057 0.00000000
Rotation angle (degrees) 163.76890846
Shift along axis -64.25489461
> view matrix models
> #16,-0.96014,-0.27951,0.00088378,403.82,0.27951,-0.96014,-0.0011089,303.81,0.0011585,-0.00081767,1,-64.071
> fitmap #16 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.0152, steps = 48
shifted from previous position = 0.266
rotated from previous position = 0.0786 degrees
atoms outside contour = 1419, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95977662 -0.28076197 0.00124515 403.93731937
0.28076031 -0.95977696 -0.00135283 303.52816064
0.00157489 -0.00094883 0.99999831 -64.36250684
Axis 0.00071948 -0.00058722 0.99999957
Axis point 180.25251203 180.68289916 0.00000000
Rotation angle (degrees) 163.69435554
Shift along axis -64.25009405
> fitmap #16 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.0152, steps = 28
shifted from previous position = 0.0194
rotated from previous position = 0.00608 degrees
atoms outside contour = 1419, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95978776 -0.28072349 0.00133543 403.91109823
0.28072182 -0.95978828 -0.00131394 303.51534759
0.00165058 -0.00088622 0.99999825 -64.36907458
Axis 0.00076182 -0.00056132 0.99999955
Axis point 180.24466850 180.67150808 0.00000000
Rotation angle (degrees) 163.69665282
Shift along axis -64.23170913
> fitmap #16 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.0152, steps = 28
shifted from previous position = 0.0203
rotated from previous position = 0.00986 degrees
atoms outside contour = 1418, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95975851 -0.28082408 0.00120087 403.94688821
0.28082249 -0.95975879 -0.00133680 303.51357364
0.00152795 -0.00094577 0.99999839 -64.35569603
Axis 0.00069621 -0.00058236 0.99999959
Axis point 180.25255541 180.68301526 0.00000000
Rotation angle (degrees) 163.69064597
Shift along axis -64.25119112
> fitmap #16 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.0152, steps = 28
shifted from previous position = 0.0144
rotated from previous position = 0.0312 degrees
atoms outside contour = 1421, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95990963 -0.28030709 0.00119824 403.90363060
0.28030561 -0.95990998 -0.00126205 303.59524710
0.00150397 -0.00087558 0.99999849 -64.35377038
Axis 0.00068937 -0.00054534 0.99999961
Axis point 180.26639409 180.66640782 0.00000000
Rotation angle (degrees) 163.72150413
Shift along axis -64.24086895
> fitmap #16 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.0152, steps = 28
shifted from previous position = 0.0181
rotated from previous position = 0.057 degrees
atoms outside contour = 1417, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95963906 -0.28123105 0.00140583 403.94264965
0.28122916 -0.95963961 -0.00140663 303.45288385
0.00174468 -0.00095449 0.99999802 -64.38291180
Axis 0.00080385 -0.00060244 0.99999950
Axis point 180.22553100 180.69590675 0.00000000
Rotation angle (degrees) 163.66635664
Shift along axis -64.24098226
> fitmap #16 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.0152, steps = 28
shifted from previous position = 0.0174
rotated from previous position = 0.0513 degrees
atoms outside contour = 1419, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95988526 -0.28039010 0.00129420 403.89077782
0.28038855 -0.95988576 -0.00125867 303.57766700
0.00159520 -0.00084530 0.99999837 -64.37299633
Axis 0.00073713 -0.00053676 0.99999958
Axis point 180.25603382 180.66609888 0.00000000
Rotation angle (degrees) 163.71655075
Shift along axis -64.23819559
> combine #15 #17
> color #17 #b256fbff
> color #17 #a14dfbff
> select subtract #16
Nothing selected
> select add #17
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #17,-0.95846,-0.28521,0.00089103,398.14,0.28521,-0.95846,-0.0016145,313.64,0.0013145,-0.0012933,1,-35.933
> view matrix models
> #17,-0.95846,-0.28521,0.00089103,396.8,0.28521,-0.95846,-0.0016145,313.75,0.0013145,-0.0012933,1,-35.078
> fitmap #17 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.005992, steps = 108
shifted from previous position = 4.06
rotated from previous position = 4.23 degrees
atoms outside contour = 1876, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.96679023 -0.25517376 0.01424798 388.78971905
0.25555796 -0.96466858 0.06406768 303.16171060
-0.00260381 0.06558119 0.99784384 -46.60140759
Axis 0.00296179 0.03297730 0.99945171
Axis point 174.68546574 177.62398175 0.00000000
Rotation angle (degrees) 165.19643286
Shift along axis -35.42688715
> ui mousemode right "rotate selected models"
> view matrix models
> #17,-0.98526,-0.1443,0.091833,357.96,0.14256,-0.98946,-0.025225,344.38,0.094505,-0.011762,0.99545,-49.776
> view matrix models
> #17,-0.99874,-0.045578,-0.021185,369.86,0.045361,-0.99891,0.010599,353.41,-0.021645,0.0096242,0.99972,-35.514
> ui mousemode right "translate selected models"
> view matrix models
> #17,-0.99874,-0.045578,-0.021185,369.11,0.045361,-0.99891,0.010599,358.89,-0.021645,0.0096242,0.99972,-38.81
> view matrix models
> #17,-0.99874,-0.045578,-0.021185,368.27,0.045361,-0.99891,0.010599,355.3,-0.021645,0.0096242,0.99972,-33.866
> ui mousemode right "rotate selected models"
> view matrix models
> #17,-0.99495,0.094482,-0.03375,349.21,-0.09579,-0.99462,0.039495,370.73,-0.029837,0.042528,0.99865,-37.316
> ui mousemode right "translate selected models"
> view matrix models
> #17,-0.99495,0.094482,-0.03375,350.3,-0.09579,-0.99462,0.039495,369.75,-0.029837,0.042528,0.99865,-37.34
> fitmap #17 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.006749, steps = 652
shifted from previous position = 1.97
rotated from previous position = 4.79 degrees
atoms outside contour = 1853, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.98317007 0.17056528 -0.06545307 342.31288805
-0.17266838 -0.98458468 0.02790420 383.94210846
-0.05968461 0.03873625 0.99746541 -32.46969552
Axis 0.03153867 -0.01679551 -0.99936141
Axis point 187.28805738 177.47864542 0.00000000
Rotation angle (degrees) 170.11178379
Shift along axis 36.79655112
> fitmap #17 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.006751, steps = 48
shifted from previous position = 0.0291
rotated from previous position = 0.279 degrees
atoms outside contour = 1852, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.98227737 0.17517417 -0.06667210 341.71401636
-0.17734390 -0.98374759 0.02810364 384.51666718
-0.06066548 0.03942946 0.99737907 -32.40661552
Axis 0.03210711 -0.01702791 -0.99933937
Axis point 187.46437981 177.39040330 0.00000000
Rotation angle (degrees) 169.84128309
Shift along axis 36.80914252
> fitmap #17 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.006751, steps = 64
shifted from previous position = 0.0165
rotated from previous position = 0.111 degrees
atoms outside contour = 1856, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.98191283 0.17698535 -0.06725613 341.50318812
-0.17917028 -0.98342158 0.02792874 384.80424008
-0.06119815 0.03947388 0.99734477 -32.31322422
Axis 0.03239432 -0.01699797 -0.99933061
Axis point 187.54859987 177.38380172 0.00000000
Rotation angle (degrees) 169.73523660
Shift along axis 36.81346655
> fitmap #17 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.006751, steps = 84
shifted from previous position = 0.00841
rotated from previous position = 0.0217 degrees
atoms outside contour = 1853, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.98184784 0.17728811 -0.06740735 341.47793294
-0.17946863 -0.98337217 0.02775214 384.88231097
-0.06136639 0.03934588 0.99733950 -32.25844582
Axis 0.03247582 -0.01692164 -0.99932926
Axis point 187.56868972 177.39613804 0.00000000
Rotation angle (degrees) 169.71770967
Shift along axis 36.81374321
> ui mousemode right "rotate selected models"
> view matrix models
> #17,-0.97598,0.18839,-0.10939,348.05,-0.19353,-0.98034,0.038356,384.34,-0.10001,0.058605,0.99326,-28.15
> view matrix models
> #17,-0.95163,0.30458,-0.040366,311.49,-0.3072,-0.9455,0.10794,381.88,-0.0052891,0.11512,0.99334,-51.761
> ui mousemode right "translate selected models"
> view matrix models
> #17,-0.95163,0.30458,-0.040366,307.93,-0.3072,-0.9455,0.10794,384.99,-0.0052891,0.11512,0.99334,-52.612
> fitmap #17 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01537, steps = 96
shifted from previous position = 2.48
rotated from previous position = 6.91 degrees
atoms outside contour = 1419, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95979572 0.28069442 0.00167698 302.48667202
-0.28069684 -0.95979539 -0.00144350 404.76338262
0.00120438 -0.00185619 0.99999755 -35.98402697
Axis -0.00073512 0.00084184 -0.99999938
Axis point 180.24092538 180.70250217 0.00000000
Rotation angle (degrees) 163.69826313
Shift along axis 36.10238860
> fitmap #17 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01537, steps = 28
shifted from previous position = 0.0142
rotated from previous position = 0.0661 degrees
atoms outside contour = 1420, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.96010528 0.27963170 0.00198984 302.62231197
-0.27963460 -0.96010553 -0.00136309 404.61602173
0.00152930 -0.00186513 0.99999709 -36.04241406
Axis -0.00089769 0.00082348 -0.99999926
Axis point 180.18696111 180.70444471 0.00000000
Rotation angle (degrees) 163.76167624
Shift along axis 36.10391950
> fitmap #17 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01537, steps = 36
shifted from previous position = 0.00627
rotated from previous position = 0.0274 degrees
atoms outside contour = 1419, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95998625 0.28004152 0.00177534 302.59039065
-0.28004401 -0.95998621 -0.00135030 404.66542705
0.00132616 -0.00179344 0.99999751 -36.02235022
Axis -0.00079120 0.00080198 -0.99999937
Axis point 180.21668663 180.69916192 0.00000000
Rotation angle (degrees) 163.73723229
Shift along axis 36.10745122
> combine #17 #18
> color #18 #f89cfcff
> select subtract #17
Nothing selected
> select add #18
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #18,-0.95999,0.28004,0.0017753,302.47,-0.28004,-0.95999,-0.0013503,404.14,0.0013262,-0.0017934,1,-52.871
> view matrix models
> #18,-0.95999,0.28004,0.0017753,303.11,-0.28004,-0.95999,-0.0013503,403.95,0.0013262,-0.0017934,1,-80.175
> view matrix models
> #18,-0.95999,0.28004,0.0017753,302.66,-0.28004,-0.95999,-0.0013503,403.75,0.0013262,-0.0017934,1,-83.585
> fitmap #18 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.009588, steps = 108
shifted from previous position = 1.1
rotated from previous position = 5.96 degrees
atoms outside contour = 1707, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.98260076 0.18313635 0.03093250 314.89256854
-0.18310176 -0.98308595 0.00397123 390.92623224
0.03113659 -0.00176167 0.99951359 -87.13894575
Axis -0.01565154 -0.00055717 -0.99987735
Axis point 176.18398169 180.88591364 0.00000000
Rotation angle (degrees) 169.44720209
Shift along axis 81.98189403
> view matrix models
> #18,-0.9826,0.18314,0.030933,316.25,-0.1831,-0.98309,0.0039712,391.04,0.031137,-0.0017617,0.99951,-90.397
> view matrix models
> #18,-0.9826,0.18314,0.030933,315.52,-0.1831,-0.98309,0.0039712,390.51,0.031137,-0.0017617,0.99951,-92.675
> fitmap #18 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01498, steps = 68
shifted from previous position = 1.85
rotated from previous position = 5.92 degrees
atoms outside contour = 1452, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.96006704 0.27975335 0.00305640 302.17394892
-0.27975767 -0.96007003 -0.00108530 404.63887625
0.00263074 -0.00189701 0.99999474 -87.89062940
Axis -0.00145075 0.00076077 -0.99999866
Axis point 180.02253215 180.71263841 0.00000000
Rotation angle (degrees) 163.75436435
Shift along axis 87.75996725
> fitmap #18 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01498, steps = 28
shifted from previous position = 0.0189
rotated from previous position = 0.153 degrees
atoms outside contour = 1455, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95935934 0.28217878 0.00218860 301.90040301
-0.28218163 -0.95936035 -0.00111959 404.91911070
0.00178373 -0.00169167 0.99999698 -87.78020510
Axis -0.00101368 0.00071739 -0.99999923
Axis point 180.14770342 180.68232169 0.00000000
Rotation angle (degrees) 163.60961758
Shift along axis 87.76459278
> fitmap #18 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01498, steps = 28
shifted from previous position = 0.0179
rotated from previous position = 0.0741 degrees
atoms outside contour = 1454, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95970501 0.28099757 0.00258027 302.03445423
-0.28100128 -0.95970664 -0.00120286 404.79400149
0.00213830 -0.00187945 0.99999595 -87.81458440
Axis -0.00120390 0.00078642 -0.99999897
Axis point 180.08658606 180.70072811 0.00000000
Rotation angle (degrees) 163.68012002
Shift along axis 87.76921309
> fitmap #18 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01498, steps = 36
shifted from previous position = 0.0111
rotated from previous position = 0.0301 degrees
atoms outside contour = 1455, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95957839 0.28143191 0.00232310 302.00239655
-0.28143500 -0.95957963 -0.00112902 404.83751277
0.00191146 -0.00173718 0.99999666 -87.79533087
Axis -0.00108048 0.00073133 -0.99999915
Axis point 180.11529372 180.69313129 0.00000000
Rotation angle (degrees) 163.65420924
Shift along axis 87.76501979
> fitmap #18 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01498, steps = 28
shifted from previous position = 0.0179
rotated from previous position = 0.0129 degrees
atoms outside contour = 1455, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95951997 0.28163033 0.00240457 301.96315448
-0.28163364 -0.95952131 -0.00116460 404.87350755
0.00197925 -0.00179467 0.99999643 -87.79995418
Axis -0.00111859 0.00075510 -0.99999909
Axis point 180.12115750 180.69671193 0.00000000
Rotation angle (degrees) 163.64235391
Shift along axis 87.76782011
> fitmap #18 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01498, steps = 28
shifted from previous position = 0.0121
rotated from previous position = 0.0264 degrees
atoms outside contour = 1453, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95964411 0.28120588 0.00253592 302.00777732
-0.28120940 -0.95964574 -0.00115208 404.81680250
0.00210961 -0.00181871 0.99999612 -87.81645642
Axis -0.00118530 0.00075799 -0.99999901
Axis point 180.09664874 180.69868429 0.00000000
Rotation angle (degrees) 163.66768984
Shift along axis 87.76524729
> select subtract #18
Nothing selected
> select add #1
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> select subtract #1
Nothing selected
> combine #1 #19
> color #19 #ff515aff
> select add #19
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #19,0.84113,0.54083,0.0010819,-69.478,-0.54083,0.84113,0.0017252,132.27,2.3041e-05,-0.0020362,1,-45.791
> view matrix models
> #19,0.84113,0.54083,0.0010819,-56.855,-0.54083,0.84113,0.0017252,118.92,2.3041e-05,-0.0020362,1,-76.108
> view matrix models
> #19,0.84113,0.54083,0.0010819,-73.149,-0.54083,0.84113,0.0017252,124.68,2.3041e-05,-0.0020362,1,-78.215
> fitmap #19 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01493, steps = 68
shifted from previous position = 4.22
rotated from previous position = 0.197 degrees
atoms outside contour = 1440, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.84290760 0.53805832 0.00014983 -68.70434699
-0.53805746 0.84290569 0.00203996 124.81781469
0.00097133 -0.00180011 0.99999791 -78.24022914
Axis -0.00356843 -0.00076339 -0.99999334
Axis point 179.64706304 179.61957650 0.00000000
Rotation angle (degrees) 32.55177229
Shift along axis 78.38959020
> view matrix models
> #19,0.84291,0.53806,0.00014983,-69.624,-0.53806,0.84291,0.00204,124.52,0.00097133,-0.0018001,1,-78.06
> fitmap #19 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01493, steps = 44
shifted from previous position = 0.975
rotated from previous position = 0.0144 degrees
atoms outside contour = 1443, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.84279749 0.53823078 0.00014335 -68.71788474
-0.53823005 0.84279584 0.00189354 124.88856829
0.00089835 -0.00167302 0.99999820 -78.24794745
Axis -0.00331321 -0.00070137 -0.99999427
Axis point 179.66183027 179.66542366 0.00000000
Rotation angle (degrees) 32.56346629
Shift along axis 78.38758208
> fitmap #19 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01493, steps = 28
shifted from previous position = 0.0119
rotated from previous position = 0.0294 degrees
atoms outside contour = 1442, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.84307017 0.53780354 0.00019184 -68.71749268
-0.53780295 0.84306859 0.00182732 124.79498929
0.00082100 -0.00164373 0.99999831 -78.23418251
Axis -0.00322705 -0.00058493 -0.99999462
Axis point 179.68421515 179.73544971 0.00000000
Rotation angle (degrees) 32.53441758
Shift along axis 78.38251978
> fitmap #19 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01493, steps = 28
shifted from previous position = 0.0182
rotated from previous position = 0.0622 degrees
atoms outside contour = 1444, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.84251285 0.53867625 0.00006436 -68.72124912
-0.53867514 0.84251086 0.00213009 124.94637251
0.00109320 -0.00182930 0.99999773 -78.26197015
Axis -0.00367508 -0.00095496 -0.99999279
Axis point 179.59733213 179.54646316 0.00000000
Rotation angle (degrees) 32.59379727
Shift along axis 78.39464308
> fitmap #19 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01493, steps = 36
shifted from previous position = 0.0175
rotated from previous position = 0.045 degrees
atoms outside contour = 1441, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.84291369 0.53804878 0.00014293 -68.70910483
-0.53804805 0.84291205 0.00189059 124.84892691
0.00089675 -0.00167051 0.99999820 -78.24099585
Axis -0.00330925 -0.00070052 -0.99999428
Axis point 179.68388346 179.67813676 0.00000000
Rotation angle (degrees) 32.55109377
Shift along axis 78.38046539
> combine #19 #20
> color #20 #943e41ff
> select subtract #19
Nothing selected
> select add #20
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #20,0.84291,0.53805,0.00014293,-57.46,-0.53805,0.84291,0.0018906,136.84,0.00089675,-0.0016705,1,-8.813
> view matrix models
> #20,0.84291,0.53805,0.00014293,-66.126,-0.53805,0.84291,0.0018906,141.82,0.00089675,-0.0016705,1,-7.0685
> view matrix models
> #20,0.84291,0.53805,0.00014293,-68.284,-0.53805,0.84291,0.0018906,139.61,0.00089675,-0.0016705,1,-6.96
> fitmap #20 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.006266, steps = 92
shifted from previous position = 1.38
rotated from previous position = 2.56 degrees
atoms outside contour = 1884, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.83250637 0.55280306 0.03663220 -76.33949265
-0.55258969 0.83328740 -0.01663546 145.91966021
-0.03972128 -0.00639345 0.99919034 -0.08756619
Axis 0.00924308 0.06890648 -0.99758030
Axis point 202.65380769 199.65507560 0.00000000
Rotation angle (degrees) 33.64440976
Shift along axis 9.43655259
> ui mousemode right "rotate selected models"
> view matrix models
> #20,0.72893,0.64726,0.22299,-114.97,-0.63028,0.76165,-0.15048,198.38,-0.26724,-0.030862,0.96314,47.615
> fitmap #20 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.005042, steps = 228
shifted from previous position = 4.65
rotated from previous position = 10.9 degrees
atoms outside contour = 1904, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.82281317 0.53607132 0.18869558 -102.46482396
-0.49212554 0.83814966 -0.23519692 182.92361266
-0.28423746 0.10066121 0.95345497 35.81105929
Axis 0.28449734 0.40061019 -0.87096081
Axis point 267.02032981 286.26549674 0.00000000
Rotation angle (degrees) 36.17587647
Shift along axis 12.94006457
> ui mousemode right "translate selected models"
> view matrix models
> #20,0.82281,0.53607,0.1887,-103.24,-0.49213,0.83815,-0.2352,192.86,-0.28424,0.10066,0.95345,31.853
> view matrix models
> #20,0.82281,0.53607,0.1887,-116.48,-0.49213,0.83815,-0.2352,200.64,-0.28424,0.10066,0.95345,37.104
> view matrix models
> #20,0.82281,0.53607,0.1887,-116.82,-0.49213,0.83815,-0.2352,199.14,-0.28424,0.10066,0.95345,40.397
> ui mousemode right "rotate selected models"
> view matrix models
> #20,0.81475,0.57826,0.042398,-89.927,-0.56825,0.81089,-0.13985,194.5,-0.11525,0.089848,0.98926,7.3809
> view matrix models
> #20,0.81897,0.56897,0.0746,-96.233,-0.55301,0.81725,-0.16209,195.98,-0.15319,0.09149,0.98395,14.316
> view matrix models
> #20,0.69458,0.70714,0.13233,-110.05,-0.68641,0.70648,-0.17243,236.19,-0.21542,0.028937,0.97609,35.386
> view matrix models
> #20,0.67865,0.73335,0.04039,-91.378,-0.72648,0.67835,-0.10985,233.12,-0.10795,0.045204,0.99313,12.14
> ui mousemode right "translate selected models"
> view matrix models
> #20,0.67865,0.73335,0.04039,-81.324,-0.72648,0.67835,-0.10985,226.79,-0.10795,0.045204,0.99313,11.318
> view matrix models
> #20,0.67865,0.73335,0.04039,-83.011,-0.72648,0.67835,-0.10985,225.94,-0.10795,0.045204,0.99313,8.8636
> fitmap #20 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01534, steps = 100
shifted from previous position = 1.48
rotated from previous position = 19.7 degrees
atoms outside contour = 1412, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41286576 0.91079037 0.00166248 -58.78890893
-0.91079180 0.41286422 0.00119944 269.91624126
0.00040606 -0.00200938 0.99999790 -2.96822453
Axis -0.00176156 0.00068974 -0.99999821
Axis point 179.96009424 180.55076972 0.00000000
Rotation angle (degrees) 65.61512939
Shift along axis 3.25795140
> fitmap #20 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01533, steps = 28
shifted from previous position = 0.0144
rotated from previous position = 0.0725 degrees
atoms outside contour = 1411, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41185908 0.91124627 0.00152711 -58.67833545
-0.91124699 0.41185640 0.00179787 270.01559355
0.00100935 -0.00213205 0.99999722 -3.03336563
Axis -0.00215633 0.00028410 -0.99999763
Axis point 179.84014794 180.45912628 0.00000000
Rotation angle (degrees) 65.67849874
Shift along axis 3.23659935
> fitmap #20 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01533, steps = 28
shifted from previous position = 0.00668
rotated from previous position = 0.0785 degrees
atoms outside contour = 1410, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41063566 0.91179849 0.00136454 -58.54003787
-0.91179862 0.41063270 0.00201543 270.23932571
0.00127734 -0.00207179 0.99999704 -3.08751641
Axis -0.00224129 0.00004781 -0.99999749
Axis point 179.77534539 180.39728451 0.00000000
Rotation angle (degrees) 65.75541358
Shift along axis 3.23163531
> combine #20 #21
> color #21 #f77c7eff
> color #21 #f72d01ff
> select subtract #20
Nothing selected
> select add #21
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #21,0.41064,0.9118,0.0013645,-80.462,-0.9118,0.41063,0.0020154,262.57,0.0012773,-0.0020718,1,-39.346
> view matrix models
> #21,0.41064,0.9118,0.0013645,-60.12,-0.9118,0.41063,0.0020154,272.47,0.0012773,-0.0020718,1,-54.035
> view matrix models
> #21,0.41064,0.9118,0.0013645,-59.649,-0.9118,0.41063,0.0020154,270.71,0.0012773,-0.0020718,1,-55.403
> fitmap #21 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01522, steps = 60
shifted from previous position = 1.43
rotated from previous position = 0.247 degrees
atoms outside contour = 1406, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41440823 0.91009106 0.00028925 -58.67371223
-0.91008841 0.41440620 0.00256542 269.08864546
0.00221490 -0.00132638 0.99999667 -55.01498269
Axis -0.00213814 -0.00105794 -0.99999715
Axis point 179.86757467 180.07582187 0.00000000
Rotation angle (degrees) 65.51811340
Shift along axis 54.85559838
> fitmap #21 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01522, steps = 28
shifted from previous position = 0.02
rotated from previous position = 0.0322 degrees
atoms outside contour = 1405, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41391669 0.91031474 0.00021092 -58.60908503
-0.91031169 0.41391468 0.00269643 269.15593274
0.00236730 -0.00130810 0.99999634 -55.05569398
Axis -0.00219952 -0.00118441 -0.99999688
Axis point 179.83524327 180.03316147 0.00000000
Rotation angle (degrees) 65.54906436
Shift along axis 54.86564271
> view matrix models
> #21,0.41392,0.91031,0.00021092,-58.505,-0.91031,0.41391,0.0026964,269.06,0.0023673,-0.0013081,1,-56.097
> fitmap #21 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01522, steps = 48
shifted from previous position = 1.07
rotated from previous position = 0.0365 degrees
atoms outside contour = 1408, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41436210 0.91011202 0.00041430 -58.69625321
-0.91011000 0.41436011 0.00234418 269.14704524
0.00196179 -0.00134840 0.99999717 -54.96948569
Axis -0.00202863 -0.00085016 -0.99999758
Axis point 179.87810100 180.11892413 0.00000000
Rotation angle (degrees) 65.52100069
Shift along axis 54.85960674
> select subtract #21
Nothing selected
> select add #21
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> fitmap #21 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01522, steps = 28
shifted from previous position = 0.0127
rotated from previous position = 0.0435 degrees
atoms outside contour = 1405, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41377525 0.91037902 0.00028836 -58.61410977
-0.91037600 0.41377302 0.00272524 269.18846291
0.00236168 -0.00139016 0.99999625 -55.03544669
Axis -0.00226026 -0.00113871 -0.99999680
Axis point 179.82198409 180.04172204 0.00000000
Rotation angle (degrees) 65.55797650
Shift along axis 54.86122585
> fitmap #21 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01522, steps = 40
shifted from previous position = 0.0116
rotated from previous position = 0.045 degrees
atoms outside contour = 1409, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41442981 0.91008122 0.00032342 -58.68392253
-0.91007894 0.41442792 0.00241262 269.11702083
0.00206165 -0.00129420 0.99999704 -54.99444282
Axis -0.00203653 -0.00095498 -0.99999747
Axis point 179.88276401 180.10061651 0.00000000
Rotation angle (degrees) 65.51673862
Shift along axis 54.85681320
> view matrix models
> #21,0.41443,0.91008,0.00032342,-58.398,-0.91008,0.41443,0.0024126,269.11,0.0020616,-0.0012942,1,-55.687
> fitmap #21 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01522, steps = 48
shifted from previous position = 0.734
rotated from previous position = 0.0105 degrees
atoms outside contour = 1406, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41430078 0.91013997 0.00031797 -58.66413112
-0.91013792 0.41429904 0.00229561 269.15666777
0.00195759 -0.00124046 0.99999731 -54.99987712
Axis -0.00194259 -0.00090075 -0.99999771
Axis point 179.88600798 180.10046695 0.00000000
Rotation angle (degrees) 65.52484834
Shift along axis 54.87126800
> fitmap #21 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01522, steps = 40
shifted from previous position = 0.0218
rotated from previous position = 0.0149 degrees
atoms outside contour = 1409, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41450734 0.91004591 0.00034228 -58.69459742
-0.91004363 0.41450539 0.00242162 269.09790397
0.00206191 -0.00131527 0.99999701 -54.98934297
Axis -0.00205313 -0.00094480 -0.99999745
Axis point 179.88216072 180.10262586 0.00000000
Rotation angle (degrees) 65.51186034
Shift along axis 54.85546645
> fitmap #21 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01522, steps = 24
shifted from previous position = 0.0027
rotated from previous position = 0.0376 degrees
atoms outside contour = 1408, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41392957 0.91030885 0.00032484 -58.63692698
-0.91030620 0.41392745 0.00258601 269.19039233
0.00221960 -0.00136613 0.99999660 -55.00523196
Axis -0.00217076 -0.00104072 -0.99999710
Axis point 179.84432584 180.06998006 0.00000000
Rotation angle (degrees) 65.54824911
Shift along axis 54.85220741
> select clear
> combine #21 #22
> color #22 #fb4a86ff
> color #22 #fb4589ff
> color #22 #b3fbe3ff
> color #22 #aafbf2ff
> select add #22
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #22,0.41393,0.91031,0.00032484,-55.996,-0.91031,0.41393,0.002586,273.15,0.0022196,-0.0013661,1,-54.928
> view matrix models
> #22,0.41393,0.91031,0.00032484,-43.8,-0.91031,0.41393,0.002586,292.49,0.0022196,-0.0013661,1,-73.255
> ui mousemode right "move picked models"
> ui mousemode right "rotate selected models"
> view matrix models
> #22,-0.29313,0.95408,0.061695,48.362,-0.95573,-0.29414,0.0077305,405.82,0.025522,-0.056698,0.99807,-68.15
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.29313,0.95408,0.061695,45.432,-0.95573,-0.29414,0.0077305,398.3,0.025522,-0.056698,0.99807,-74.802
> fitmap #22 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.009636, steps = 84
shifted from previous position = 2.96
rotated from previous position = 3.72 degrees
atoms outside contour = 1697, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.26259993 0.96482353 0.01252317 48.37511885
-0.96414242 -0.26288617 0.03633517 391.13346313
0.03834920 -0.00253250 0.99926119 -83.43836470
Axis -0.02014359 -0.01338462 -0.99970750
Axis point 174.84048636 177.05133539 0.00000000
Rotation angle (degrees) 105.25482487
Shift along axis 77.20433696
> fitmap #22 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.009635, steps = 40
shifted from previous position = 0.0124
rotated from previous position = 0.0715 degrees
atoms outside contour = 1695, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.26149332 0.96512766 0.01224089 48.21278164
-0.96446085 -0.26176862 0.03595091 391.09225577
0.03790150 -0.00240494 0.99927859 -83.40154619
Axis -0.01987205 -0.01329469 -0.99971414
Axis point 174.90873055 177.07386933 0.00000000
Rotation angle (degrees) 105.18827393
Shift along axis 77.22016902
> view matrix models
> #22,-0.26149,0.96513,0.012241,48.063,-0.96446,-0.26177,0.035951,391.35,0.037901,-0.0024049,0.99928,-87.186
> view matrix models
> #22,-0.26149,0.96513,0.012241,48.095,-0.96446,-0.26177,0.035951,391.46,0.037901,-0.0024049,0.99928,-88.017
> fitmap #22 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01489, steps = 76
shifted from previous position = 1.28
rotated from previous position = 7.36 degrees
atoms outside contour = 1452, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14111479 0.98999072 0.00223398 26.56036543
-0.98999204 -0.14111778 0.00124148 384.15442893
0.00154431 -0.00203643 0.99999673 -82.98481164
Axis -0.00165552 0.00034832 -0.99999857
Axis point 179.97583276 180.48167817 0.00000000
Rotation angle (degrees) 98.11254026
Shift along axis 83.07453073
> fitmap #22 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0149, steps = 28
shifted from previous position = 0.0123
rotated from previous position = 0.0376 degrees
atoms outside contour = 1450, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14051441 0.99007627 0.00216195 26.47409123
-0.99007778 -0.14051682 0.00100407 384.12014311
0.00129790 -0.00199941 0.99999716 -82.95888874
Axis -0.00151679 0.00043635 -0.99999875
Axis point 180.01100973 180.49623071 0.00000000
Rotation angle (degrees) 98.07776599
Shift along axis 83.08624165
> fitmap #22 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0149, steps = 28
shifted from previous position = 0.0164
rotated from previous position = 0.0529 degrees
atoms outside contour = 1451, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.13964442 0.99019960 0.00204716 26.33743899
-0.99020118 -0.13964619 0.00074744 384.07392290
0.00102599 -0.00192272 0.99999763 -82.91611955
Axis -0.00134829 0.00051564 -0.99999896
Axis point 180.06079181 180.52504141 0.00000000
Rotation angle (degrees) 98.02739083
Shift along axis 83.07856464
> combine #21 #23
> select subtract #22
Nothing selected
> select add #23
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> color #23 #fba1f9ff
> color #23 #be7abcff
> color #23 #be5534ff
> view matrix models
> #23,0.41393,0.91031,0.00032484,-56.173,-0.91031,0.41393,0.002586,274.74,0.0022196,-0.0013661,1,-51.112
> view matrix models
> #23,0.41393,0.91031,0.00032484,-124.24,-0.91031,0.41393,0.002586,206.71,0.0022196,-0.0013661,1,33.239
> view matrix models
> #23,0.41393,0.91031,0.00032484,-65.194,-0.91031,0.41393,0.002586,312.1,0.0022196,-0.0013661,1,-15.388
> view matrix models
> #23,0.41393,0.91031,0.00032484,-51.009,-0.91031,0.41393,0.002586,292.9,0.0022196,-0.0013661,1,-26.171
> fitmap #23 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.009615, steps = 468
shifted from previous position = 5.58
rotated from previous position = 39 degrees
atoms outside contour = 1695, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.24997180 0.96820436 0.00971624 46.60264910
-0.96759907 -0.25015915 0.03424102 390.25483619
0.03558291 -0.00084213 0.99936637 -31.64349668
Axis -0.01811871 -0.01335885 -0.99974659
Axis point 174.84209845 177.11302974 0.00000000
Rotation angle (degrees) 104.50013523
Shift along axis 25.57774082
> view matrix models
> #23,-0.24997,0.9682,0.0097162,45.088,-0.9676,-0.25016,0.034241,392.37,0.035583,-0.00084213,0.99937,-33.623
> view matrix models
> #23,-0.24997,0.9682,0.0097162,45.909,-0.9676,-0.25016,0.034241,392.85,0.035583,-0.00084213,0.99937,-36.132
> fitmap #23 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01533, steps = 76
shifted from previous position = 2.87
rotated from previous position = 6.44 degrees
atoms outside contour = 1404, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14515572 0.98940556 0.00254093 27.38009576
-0.98940753 -0.14515920 0.00124288 384.77502509
0.00159855 -0.00233360 0.99999600 -31.27791094
Axis -0.00180738 0.00047623 -0.99999825
Axis point 179.93335653 180.52743058 0.00000000
Rotation angle (degrees) 98.34651320
Shift along axis 31.41161286
> fitmap #23 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01533, steps = 36
shifted from previous position = 0.00512
rotated from previous position = 0.147 degrees
atoms outside contour = 1407, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14279403 0.98974968 0.00233329 27.00483709
-0.98975220 -0.14279520 0.00033988 384.66704275
0.00066958 -0.00226084 0.99999722 -31.13940148
Axis -0.00131383 0.00084047 -0.99999878
Axis point 180.08775000 180.60837389 0.00000000
Rotation angle (degrees) 98.20967159
Shift along axis 31.42718351
> fitmap #23 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01533, steps = 36
shifted from previous position = 0.00437
rotated from previous position = 0.00303 degrees
atoms outside contour = 1406, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14275667 0.98975499 0.00236449 26.98962745
-0.98975760 -0.14275781 0.00031999 384.66488903
0.00065426 -0.00229459 0.99999715 -31.12839727
Axis -0.00132082 0.00086396 -0.99999875
Axis point 180.08534970 180.61298175 0.00000000
Rotation angle (degrees) 98.20750981
Shift along axis 31.42504678
> fitmap #23 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01533, steps = 28
shifted from previous position = 0.0022
rotated from previous position = 0.0351 degrees
atoms outside contour = 1407, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14332611 0.98967260 0.00240267 27.08414513
-0.98967514 -0.14332776 0.00052753 384.69526819
0.00086645 -0.00230225 0.99999697 -31.16099618
Axis -0.00142965 0.00077612 -0.99999868
Axis point 180.05181927 180.59394696 0.00000000
Rotation angle (degrees) 98.24049541
Shift along axis 31.42080434
> select subtract #23
Nothing selected
> combine #23 #24
> select add #24
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> color #24 #cbc9cbff
> color #24 #5c5b5cff
> view matrix models
> #24,-0.14333,0.98967,0.0024027,49.01,-0.98968,-0.14333,0.00052753,402.14,0.00086645,-0.0023023,1,-53.812
> ui mousemode right "rotate selected models"
> view matrix models
> #24,-0.8641,0.49333,0.099801,217.28,-0.47285,-0.86361,0.17491,391.07,0.17248,0.10395,0.97951,-92.661
> fitmap #23 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01533, steps = 28
shifted from previous position = 0.0129
rotated from previous position = 0.0325 degrees
atoms outside contour = 1404, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14280944 0.98974751 0.00231057 27.01004015
-0.98974999 -0.14281056 0.00032599 384.66630155
0.00065262 -0.00224033 0.99999728 -31.14805554
Axis -0.00129645 0.00083756 -0.99999881
Axis point 180.08718705 180.60620775 0.00000000
Rotation angle (degrees) 98.21056054
Shift along axis 31.43518161
> fitmap #23 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01533, steps = 36
shifted from previous position = 0.0091
rotated from previous position = 0.0387 degrees
atoms outside contour = 1404, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14216106 0.98984088 0.00229308 26.89566604
-0.98984342 -0.14216180 0.00016459 384.62673223
0.00048891 -0.00224640 0.99999736 -31.11908119
Axis -0.00121786 0.00091134 -0.99999884
Axis point 180.12091039 180.62815995 0.00000000
Rotation angle (degrees) 98.17301470
Shift along axis 31.43681665
> fitmap #24 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#24) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.009696, steps = 284
shifted from previous position = 7.23
rotated from previous position = 15.8 degrees
atoms outside contour = 1683, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#24) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.74511047 0.66627611 0.02977453 184.39464653
-0.66577636 -0.74570489 0.02580784 428.69480834
0.03939816 -0.00059348 0.99922342 -60.41169213
Axis -0.01981562 -0.00722306 -0.99977756
Axis point 174.68050316 179.17355950 0.00000000
Rotation angle (degrees) 138.22751284
Shift along axis 53.64787269
> view matrix models
> #24,-0.6941,0.71984,-0.0080316,176.46,-0.71984,-0.69413,-0.0028391,435.73,-0.0076187,0.0038109,0.99996,-53.779
> ui mousemode right "translate selected models"
> view matrix models
> #24,-0.6941,0.71984,-0.0080316,175.95,-0.71984,-0.69413,-0.0028391,435.69,-0.0076187,0.0038109,0.99996,-59.294
> fitmap #24 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#24) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01512, steps = 56
shifted from previous position = 0.856
rotated from previous position = 3.01 degrees
atoms outside contour = 1417, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#24) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.65619907 0.75458425 0.00232109 161.86554090
-0.75458613 -0.65620100 0.00009757 435.00235504
0.00159673 -0.00168744 0.99999730 -59.55655411
Axis -0.00118277 0.00047998 -0.99999919
Axis point 180.05778136 180.59683287 0.00000000
Rotation angle (degrees) 131.01080821
Shift along axis 59.57384653
> view matrix models
> #24,-0.6562,0.75458,0.0023211,164.45,-0.75459,-0.6562,9.7566e-05,431.75,0.0015967,-0.0016874,1,-54.315
> view matrix models
> #24,-0.6562,0.75458,0.0023211,163.14,-0.75459,-0.6562,9.7566e-05,435.42,0.0015967,-0.0016874,1,-59.591
> fitmap #24 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#24) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01512, steps = 48
shifted from previous position = 1.33
rotated from previous position = 0.16 degrees
atoms outside contour = 1410, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#24) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.65423983 0.75628565 0.00150570 161.48783907
-0.75628690 -0.65423992 -0.00050312 435.09898571
0.00060458 -0.00146790 0.99999874 -59.42573024
Axis -0.00063784 0.00059575 -0.99999962
Axis point 180.21418966 180.60854145 0.00000000
Rotation angle (degrees) 130.86208586
Shift along axis 59.58191477
> select clear
> fitmap #24 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#24) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01512, steps = 36
shifted from previous position = 0.00402
rotated from previous position = 0.0261 degrees
atoms outside contour = 1413, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#24) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.65450283 0.75605747 0.00177723 161.50503784
-0.75605906 -0.65450329 -0.00038929 435.07979840
0.00086888 -0.00159848 0.99999835 -59.44407111
Axis -0.00079967 0.00060071 -0.99999950
Axis point 180.17736710 180.60966239 0.00000000
Rotation angle (degrees) 130.88204248
Shift along axis 59.57624915
> combine #23 #25
> color #25 #6000cbff
> select add #25
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> view matrix models
> #25,-0.14216,0.98984,0.0022931,31.018,-0.98984,-0.14216,0.00016459,383,0.00048891,-0.0022464,1,-34.483
> view matrix models
> #25,-0.14216,0.98984,0.0022931,29.516,-0.98984,-0.14216,0.00016459,386.78,0.00048891,-0.0022464,1,-10.405
> view matrix models
> #25,-0.14216,0.98984,0.0022931,35.605,-0.98984,-0.14216,0.00016459,390.49,0.00048891,-0.0022464,1,-11.887
> fitmap #25 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#25) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.006252, steps = 168
shifted from previous position = 4.09
rotated from previous position = 3.57 degrees
atoms outside contour = 1879, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#25) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.19807400 0.98017507 -0.00484908 51.27967405
-0.97987378 -0.19813334 -0.02430144 401.39819748
-0.02478043 -0.00006200 0.99969292 -8.60662837
Axis 0.01236517 0.01016750 -0.99987185
Axis point 189.72003980 179.74716109 0.00000000
Rotation angle (degrees) 101.43506389
Shift along axis 13.32082319
> view matrix models
> #25,-0.19807,0.98018,-0.0048491,51.973,-0.97987,-0.19813,-0.024301,400.34,-0.02478,-6.1996e-05,0.99969,-0.0019831
> fitmap #25 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#25) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01538, steps = 576
shifted from previous position = 9.94
rotated from previous position = 29.7 degrees
atoms outside contour = 1415, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#25) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.65713960 0.75376743 0.00148529 162.52255446
-0.75376884 -0.65713905 -0.00089866 435.27146784
0.00029867 -0.00171011 0.99999849 -7.68736589
Axis -0.00053826 0.00078713 -0.99999955
Axis point 180.25598777 180.66912945 0.00000000
Rotation angle (degrees) 131.08212199
Shift along axis 7.94249717
> fitmap #25 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#25) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01539, steps = 36
shifted from previous position = 0.0182
rotated from previous position = 0.147 degrees
atoms outside contour = 1413, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#25) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.65897332 0.75216327 0.00213916 162.90542091
-0.75216553 -0.65897408 -0.00042719 435.18747632
0.00108834 -0.00189051 0.99999762 -7.79995849
Axis -0.00097274 0.00069853 -0.99999928
Axis point 180.11044523 180.65927726 0.00000000
Rotation angle (degrees) 131.22173875
Shift along axis 7.94548106
> select subtract #25
Nothing selected
> fitmap #1 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#1) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0154, steps = 40
shifted from previous position = 0.0136
rotated from previous position = 0.0126 degrees
atoms outside contour = 1391, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#1) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.84103335 0.54098236 0.00099363 -69.10116854
-0.54098326 0.84103143 0.00180284 125.78058227
0.00013963 -0.00205379 0.99999788 -26.40532164
Axis -0.00356445 0.00078930 -0.99999334
Axis point 179.48397901 180.29753030 0.00000000
Rotation angle (degrees) 32.75081362
Shift along axis 26.75073115
> select add #2
4172 atoms, 4196 bonds, 2 pseudobonds, 546 residues, 2 models selected
> select subtract #2
Nothing selected
> select add #3
6258 atoms, 6294 bonds, 3 pseudobonds, 819 residues, 2 models selected
> select subtract #3
Nothing selected
> fitmap #2 inMap #6
Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 4172 atoms
average map value = 0.0152, steps = 40
shifted from previous position = 0.00709
rotated from previous position = 0.0482 degrees
atoms outside contour = 2882, contour level = 0.023968
Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.99999862 0.00003204 -0.00166022 0.52627021
-0.00002985 0.99999912 0.00132259 -0.44175560
0.00166026 -0.00132254 0.99999775 -50.21532302
Axis -0.62301104 -0.78207719 -0.01457791
Axis point 30239.67506594 0.00000000 573.18936827
Rotation angle (degrees) 0.12163086
Shift along axis 0.74964919
> fitmap #3 inMap #6
Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 6258 atoms
average map value = 0.01535, steps = 40
shifted from previous position = 0.0136
rotated from previous position = 0.0207 degrees
atoms outside contour = 4208, contour level = 0.023968
Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
0.84172143 -0.53991002 -0.00148768 126.48019137
0.53991195 0.84171988 0.00165251 -69.22746988
0.00036000 -0.00219417 0.99999753 -21.70049777
Axis -0.00356230 -0.00171109 0.99999219
Axis point 181.33851729 180.95552944 0.00000000
Rotation angle (degrees) 32.67786629
Shift along axis -22.03243458
> select add #4
2 models selected
> select subtract #4
Nothing selected
> select add #5
2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected
> select subtract #5
Nothing selected
> fitmap #5 inMap #6
Fit molecule Rhom_Model_Trimmed.pdb (#5) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0153, steps = 40
shifted from previous position = 0.0223
rotated from previous position = 0.00798 degrees
atoms outside contour = 1414, contour level = 0.023968
Position of Rhom_Model_Trimmed.pdb (#5) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.99999197 0.00398259 -0.00044920 -0.45751742
-0.00398170 0.99999012 0.00197720 0.16247208
0.00045707 -0.00197540 0.99999794 1.71149665
Axis -0.44226160 -0.10140280 -0.89113531
Axis point 6.04202678 263.61988561 0.00000000
Rotation angle (degrees) 0.25603385
Shift along axis -1.33930783
> select add #6
2 models selected
> select subtract #6
Nothing selected
> fitmap #8 inMap #6
Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01505, steps = 28
shifted from previous position = 0.017
rotated from previous position = 0.00902 degrees
atoms outside contour = 1436, contour level = 0.023968
Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.83915204 -0.54389400 -0.00178156 127.72048235
0.54389608 0.83915199 0.00099395 -69.37353706
0.00095439 -0.00180306 0.99999792 -73.52381512
Axis -0.00257126 -0.00251513 0.99999353
Axis point 181.37040904 180.84034524 0.00000000
Rotation angle (degrees) 32.94942693
Shift along axis -73.67725868
> fitmap #9 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01453, steps = 36
shifted from previous position = 0.0114
rotated from previous position = 0.0187 degrees
atoms outside contour = 1498, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41413910 -0.91020970 -0.00266769 270.92657813
0.91021120 0.41414297 -0.00108711 -58.18555016
0.00209430 -0.00197794 0.99999585 -97.17358447
Axis -0.00048935 -0.00261586 0.99999646
Axis point 180.83662047 181.20432112 0.00000000
Rotation angle (degrees) 65.53489573
Shift along axis -97.15361418
> fitmap #10 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01551, steps = 28
shifted from previous position = 0.00622
rotated from previous position = 0.035 degrees
atoms outside contour = 1383, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.13983960 -0.99017326 -0.00134170 384.80401362
0.99017347 -0.13983776 -0.00137490 27.49001070
0.00117377 -0.00152078 0.99999815 -17.26195379
Axis -0.00007366 -0.00127022 0.99999919
Axis point 180.47068802 180.87248773 0.00000000
Rotation angle (degrees) 98.03856492
Shift along axis -17.32520360
> fitmap #11 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0153, steps = 40
shifted from previous position = 0.00833
rotated from previous position = 0.0519 degrees
atoms outside contour = 1418, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41742880 -0.90870795 -0.00175169 269.81930859
0.90870684 0.41743152 -0.00167635 -58.37229426
0.00225453 -0.00089201 0.99999706 -45.68706120
Axis 0.00043157 -0.00220434 0.99999748
Axis point 180.52305269 181.21486497 0.00000000
Rotation angle (degrees) 65.32764408
Shift along axis -45.44182786
> fitmap #12 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0152, steps = 28
shifted from previous position = 0.0183
rotated from previous position = 0.038 degrees
atoms outside contour = 1416, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14420560 -0.98954703 -0.00119417 385.46259200
0.98954694 -0.14420383 -0.00145528 28.43552833
0.00126786 -0.00139154 0.99999823 -68.95440132
Axis 0.00003220 -0.00124402 0.99999923
Axis point 180.47349817 180.85651389 0.00000000
Rotation angle (degrees) 98.29128017
Shift along axis -68.97730905
> fitmap #13 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01543, steps = 28
shifted from previous position = 0.0113
rotated from previous position = 0.00522 degrees
atoms outside contour = 1426, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.65377827 -0.75668616 0.00015289 434.98650437
0.75668355 -0.65377653 -0.00250094 162.70234225
0.00199238 -0.00151937 0.99999686 -40.87032994
Axis 0.00064860 -0.00121549 0.99999905
Axis point 180.29563300 180.84638586 0.00000000
Rotation angle (degrees) 130.82712958
Shift along axis -40.78592358
> fitmap #14 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01479, steps = 40
shifted from previous position = 0.00803
rotated from previous position = 0.0181 degrees
atoms outside contour = 1465, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.65470287 -0.75588630 0.00022386 435.00375875
0.75588192 -0.65470003 -0.00322228 163.32252658
0.00258224 -0.00194042 0.99999478 -92.56773102
Axis 0.00084792 -0.00156001 0.99999842
Axis point 180.27032934 180.96414755 0.00000000
Rotation angle (degrees) 130.89721416
Shift along axis -92.45352270
> fitmap #15 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01541, steps = 28
shifted from previous position = 0.00169
rotated from previous position = 0.0556 degrees
atoms outside contour = 1411, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.95819392 -0.28611740 0.00111108 404.65508980
0.28611551 -0.95819380 -0.00159970 302.34297634
0.00152233 -0.00121492 0.99999810 -12.64928371
Axis 0.00067241 -0.00071868 0.99999952
Axis point 180.24441520 180.73014442 0.00000000
Rotation angle (degrees) 163.37439554
Shift along axis -12.59447051
> fitmap #16 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.0152, steps = 24
shifted from previous position = 0.00202
rotated from previous position = 0.0708 degrees
atoms outside contour = 1420, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95955628 -0.28151231 0.00159846 403.94390438
0.28151002 -0.95955709 -0.00151592 303.40558781
0.00196057 -0.00100462 0.99999757 -64.40554858
Axis 0.00090812 -0.00064314 0.99999938
Axis point 180.21042969 180.70171087 0.00000000
Rotation angle (degrees) 163.64957295
Shift along axis -64.23381110
> fitmap #17 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01537, steps = 28
shifted from previous position = 0.0209
rotated from previous position = 0.0247 degrees
atoms outside contour = 1421, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95986796 0.28044688 0.00174608 302.52418206
-0.28044920 -0.95986803 -0.00126688 404.68907168
0.00132071 -0.00170572 0.99999767 -36.01547225
Axis -0.00078240 0.00075837 -0.99999941
Axis point 180.22880599 180.68394135 0.00000000
Rotation angle (degrees) 163.71304315
Shift along axis 36.08565975
> fitmap #18 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01498, steps = 28
shifted from previous position = 0.00864
rotated from previous position = 0.0164 degrees
atoms outside contour = 1453, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.95957585 0.28144002 0.00238970 302.00023716
-0.28144333 -0.95957712 -0.00118285 404.85440494
0.00196020 -0.00180760 0.99999645 -87.79431407
Axis -0.00110991 0.00076304 -0.99999909
Axis point 180.11740640 180.69949255 0.00000000
Rotation angle (degrees) 163.65371753
Shift along axis 87.76796138
> fitmap #19 inMap #6
Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01493, steps = 28
shifted from previous position = 0.0115
rotated from previous position = 0.0419 degrees
atoms outside contour = 1444, contour level = 0.023968
Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.84254165 0.53863119 0.00004860 -68.71619613
-0.53863008 0.84253972 0.00211011 124.94312568
0.00109562 -0.00180403 0.99999777 -78.26153068
Axis -0.00363339 -0.00097193 -0.99999293
Axis point 179.61617395 179.55410829 0.00000000
Rotation angle (degrees) 32.59072804
Shift along axis 78.38921439
> fitmap #20 inMap #6
Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01534, steps = 28
shifted from previous position = 0.0159
rotated from previous position = 0.0654 degrees
atoms outside contour = 1412, contour level = 0.023968
Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41160538 0.91136090 0.00152611 -58.64798270
-0.91136177 0.41160304 0.00163385 270.10105124
0.00086087 -0.00206334 0.99999750 -3.03033913
Axis -0.00202838 0.00036497 -0.99999788
Axis point 179.85724021 180.46465256 0.00000000
Rotation angle (degrees) 65.69443003
Shift along axis 3.24787095
> fitmap #21 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01522, steps = 24
shifted from previous position = 0.00152
rotated from previous position = 0.0182 degrees
atoms outside contour = 1408, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41365576 0.91043332 0.00028374 -58.60331930
-0.91043041 0.41365360 0.00267859 269.23227676
0.00232130 -0.00136634 0.99999637 -55.02009813
Axis -0.00222142 -0.00111900 -0.99999691
Axis point 179.82932268 180.04982971 0.00000000
Rotation angle (degrees) 65.56549039
Shift along axis 54.84883867
> fitmap #21 inMap #6
Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01522, steps = 28
shifted from previous position = 0.0177
rotated from previous position = 0.0393 degrees
atoms outside contour = 1407, contour level = 0.023968
Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
0.41423889 0.91016813 0.00034710 -58.66743246
-0.91016582 0.41423691 0.00244018 269.14666199
0.00207719 -0.00132673 0.99999696 -55.00380759
Axis -0.00206935 -0.00095042 -0.99999741
Axis point 179.86655133 180.09059491 0.00000000
Rotation angle (degrees) 65.52876294
Shift along axis 54.86926551
> fitmap #22 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.0149, steps = 36
shifted from previous position = 0.00498
rotated from previous position = 0.0426 degrees
atoms outside contour = 1452, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14031145 0.99010493 0.00221808 26.42117415
-0.99010655 -0.14031393 0.00100864 384.10203892
0.00130989 -0.00205462 0.99999703 -82.94561679
Axis -0.00154693 0.00045864 -0.99999870
Axis point 180.01164114 180.50575691 0.00000000
Rotation angle (degrees) 98.06602657
Shift along axis 83.08080032
> fitmap #23 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01533, steps = 40
shifted from previous position = 0.0144
rotated from previous position = 0.0298 degrees
atoms outside contour = 1404, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14267480 0.98976690 0.00232231 26.98430751
-0.98976949 -0.14267561 0.00018775 384.67375794
0.00051717 -0.00227176 0.99999729 -31.12496109
Axis -0.00124247 0.00091190 -0.99999881
Axis point 180.09860100 180.61905247 0.00000000
Rotation angle (degrees) 98.20275706
Shift along axis 31.44218063
> fitmap #23 inMap #6
Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms
average map value = 0.01533, steps = 40
shifted from previous position = 0.015
rotated from previous position = 0.011 degrees
atoms outside contour = 1407, contour level = 0.023968
Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
(#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates:
Matrix rotation and translation
-0.14249516 0.98979264 0.00237762 26.94258213
-0.98979537 -0.14249594 0.00016303 384.66380948
0.00050016 -0.00233013 0.99999716 -31.10078363
Axis -0.00125943 0.00094841 -0.99999876
Axis point 180.10373553 180.62922421 0.00000000
Rotation angle (degrees) 98.19236090
Shift along axis 31.43163084
> fitmap #24 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#24) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01512, steps = 24
shifted from previous position = 0.00214
rotated from previous position = 0.0688 degrees
atoms outside contour = 1415, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#24) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.65536139 0.75531260 0.00207820 161.68803112
-0.75531443 -0.65536256 -0.00014930 435.03834750
0.00124921 -0.00166754 0.99999783 -59.49277285
Axis -0.00100504 0.00054877 -0.99999934
Axis point 180.11681860 180.60141746 0.00000000
Rotation angle (degrees) 130.94718500
Shift along axis 59.56896879
> fitmap #25 inMap #6
Fit molecule copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#25) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
using 2086 atoms
average map value = 0.01539, steps = 40
shifted from previous position = 0.00313
rotated from previous position = 0.0105 degrees
atoms outside contour = 1410, contour level = 0.023968
Position of copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb (#25) relative to Rhom_Flagella_Map_2RingMasked.mrc
(#6) coordinates:
Matrix rotation and translation
-0.65895236 0.75218212 0.00195902 162.94011377
-0.75218405 -0.65895293 -0.00043265 435.18790108
0.00096547 -0.00175865 0.99999799 -7.80153019
Axis -0.00088143 0.00066045 -0.99999939
Axis point 180.13129350 180.65055489 0.00000000
Rotation angle (degrees) 131.22012104
Shift along axis 7.94532386
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> combine #1-3,5,8-25 name 2Ring_Trimmed
Remapping chain ID 'A' in combination #2 to 'C'
Remapping chain ID 'A' in combination #3 to 'D'
Remapping chain ID 'B' in combination #3 to 'E'
Remapping chain ID 'C' in combination #3 to 'F'
Remapping chain ID 'A' in Rhom_Model_Trimmed.pdb #5 to 'G'
Remapping chain ID 'A' in copy of Rhom_Model_Trimmed.pdb #8 to 'H'
Remapping chain ID 'A' in copy of copy of Rhom_Model_Trimmed.pdb #9 to 'I'
Remapping chain ID 'A' in copy of copy of Rhom_Model_Trimmed.pdb #10 to 'J'
Remapping chain ID 'A' in copy of copy of Rhom_Model_Trimmed.pdb #11 to 'K'
Remapping chain ID 'A' in copy of copy of copy of Rhom_Model_Trimmed.pdb #12
to 'L'
Remapping chain ID 'A' in copy of copy of copy of Rhom_Model_Trimmed.pdb #13
to 'M'
Remapping chain ID 'A' in copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #14 to 'N'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #15 to 'O'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #16 to 'P'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #17 to 'Q'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of copy of copy
of Rhom_Model_Trimmed.pdb #18 to 'R'
Remapping chain ID 'A' in copy of copy of Rhom_Model_Trimmed.pdb #19 to 'S'
Remapping chain ID 'A' in copy of copy of copy of Rhom_Model_Trimmed.pdb #20
to 'T'
Remapping chain ID 'A' in copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #21 to 'U'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #22 to 'V'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #23 to 'W'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #24 to 'X'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #25 to 'Y'
> hide #!26 models
> show #!26 models
> hide #!26 models
> show #!26 models
> hide #!25 models
> hide #!24 models
> hide #!23 models
> hide #!22 models
> hide #!21 models
> hide #!20 models
> hide #!19 models
> hide #!18 models
> hide #!17 models
> hide #!16 models
> hide #!15 models
> hide #!14 models
> hide #!13 models
> hide #!26 models
> hide #!12 models
> hide #!11 models
> hide #!10 models
> hide #!9 models
> hide #!8 models
> hide #!6 models
> hide #!5 models
> show #!6 models
> hide #!3 models
> hide #!2 models
> hide #!1 models
> show #!26 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> hide #!26 models
> show #!26 models
> show #!14 models
> hide #!14 models
> hide #!26 models
> show #!6 models
> show #!20 models
> show #!21 models
> show #!22 models
> show #!23 models
> show #!25 models
> show #!24 models
> show #!19 models
> show #!18 models
> show #!17 models
> show #!16 models
> show #!15 models
> show #!14 models
> hide #!19 models
> show #!19 models
> hide #!20 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> hide #!21 models
> hide #!23 models
> hide #!14 models
> hide #!22 models
> hide #!6 models
> show #!6 models
> combine #15-18,24-25 name 6Flagellin_Representative
Remapping chain ID 'A' in copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #16 to 'B'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #17 to 'C'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of copy of copy
of Rhom_Model_Trimmed.pdb #18 to 'D'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #24 to 'E'
Remapping chain ID 'A' in copy of copy of copy of copy of copy of copy of
Rhom_Model_Trimmed.pdb #25 to 'F'
> hide #!15 models
> hide #!16 models
> hide #!17 models
> hide #!18 models
> hide #!24 models
> hide #!25 models
> hide #!27 models
> show #!27 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> molmap #27 radius 3
Missing or invalid "resolution" argument: Expected a number
> molmap #27 resolution 3
Missing or invalid "resolution" argument: Expected a number
> molmap #27 resolution 5
Missing or invalid "resolution" argument: Expected a number
> molmap #27 resolution 2
Missing or invalid "resolution" argument: Expected a number
> molmap #27 resolution 2
Missing or invalid "resolution" argument: Expected a number
> molmap #27
Missing or invalid "resolution" argument: Expected a number
> molmap #27 resolution5
Missing or invalid "resolution" argument: Expected a number
> molmap #27 resolution 5
Missing or invalid "resolution" argument: Expected a number
> molmap #27 resolution 2
Missing or invalid "resolution" argument: Expected a number
> hide #!27 models
> show #!27 models
> select add #27
12516 atoms, 12588 bonds, 6 pseudobonds, 1638 residues, 2 models selected
> select subtract #27
Nothing selected
> molmap #27 resolution 5
Missing or invalid "resolution" argument: Expected a number
> save "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_2Ring_Trimmed.pdb" models #26
> save "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_MaskMaking/6_Flagellin_Selection_ForMask.pdb" models #27
> save "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
> fitting/Rhom_MaskMaking/RH_TrimmedModelFitting_and_MaskSelection.cxs"
——— End of log from Wed Aug 2 16:13:43 2023 ———
opened ChimeraX session
> hide #!27 models
> show #!27 models
> save
> /Users/mbell/sshfs/c0140_4_MotionCor2/Chimera_projects/Rhom_fitting/Rhom_MaskMaking/RH_TrimmedModelFitting_and_MaskSelection.cxs
——— End of log from Thu Aug 10 13:03:26 2023 ———
opened ChimeraX session
> show #!26 models
> hide #!27 models
> show #!27 models
> hide #!27 models
> show #!1 models
> hide #!1 models
> show #!4 models
> hide #!4 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> show #7 models
> hide #7 models
> lighting soft
> lighting full
> lighting soft
> lighting full
> set bgColor white
> hide #!6 models
> show #!6 models
> color #6 #e1ffe478 models
> color #6 #fffefa78 models
> color #6 #b3b3b078 models
> color #6 #a7adb378 models
> color #6 #a9b3af78 models
> color #6 #f0fff978 models
> color #6 #7af4ff78 models
> save /Users/mbell/Desktop/image1.png supersample 3
> ui tool show "Side View"
> view
> select add #26
52150 atoms, 52450 bonds, 25 pseudobonds, 6825 residues, 2 models selected
> view orient
> ui tool show "Side View"
> view sel
> ui tool show "Side View"
> select clear
> save /Users/mbell/Desktop/image2.png supersample 3
> open
> /Users/mbell/sshfs/R_inulinivorans/InitialModel/job010/initial_model.mrc
Opened initial_model.mrc as #28, grid size 384,384,384, pixel 0.94, shown at
level 0.0168, step 2, values float32
> close #28
> save
> /Users/mbell/sshfs/c0140_4_MotionCor2/Chimera_projects/Rhom_ISOLDE/Current.cxs
> hide #!26 models
> show #!26 models
> show #!27 models
> hide #!26 models
> show #!26 models
> close session
> open
> /Users/mbell/sshfs/R_inulinivorans/InitialModel/job010/initial_model.mrc
> format mrc
Opened initial_model.mrc as #1, grid size 384,384,384, pixel 0.94, shown at
level 0.0168, step 2, values float32
> open
> /Users/mbell/sshfs/c0140_4_MotionCor2/Chimera_projects/Rhom_ISOLDE/Current.cxs
> format session
No such file/path:
/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera_projects/Rhom_ISOLDE/Current.cxs
> open
> /Users/mbell/sshfs/c0140_4_MotionCor2/Chimera_projects/Rhom_fitting/Rhom_MaskMaking/RH_TrimmedModelFitting_and_MaskSelection.cxs
> format session
No such file/path:
/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera_projects/Rhom_fitting/Rhom_MaskMaking/RH_TrimmedModelFitting_and_MaskSelection.cxs
> open
> /Users/mbell/sshfs/c0140_4_MotionCor2/Chimera_projects/Rhom_fitting/Rhom_MaskMaking/RH_TrimmedModelFitting_and_MaskSelection.cxs
> format session
Opened RHom Model.pdb map 3 as #4, grid size 51,73,158, pixel 1, shown at
level 0.115, step 1, values float32
Opened Rhom_Flagella_Map_2RingMasked.mrc as #6, grid size 200,201,275, pixel
0.94,0.94,0.94, shown at level 0.024, step 1, values float32
opened ChimeraX session
> hide #!27 models
> show #!26 models
> open
> /Users/mbell/sshfs/c0140_4_MotionCor2/Chimera_projects/Rhom_ISOLDE/Current.cxs
> format session
Opened RHom Model.pdb map 3 as #4, grid size 51,73,158, pixel 1, shown at
level 0.115, step 1, values float32
Opened Rhom_Flagella_Map_2RingMasked.mrc as #6, grid size 200,201,275, pixel
0.94,0.94,0.94, shown at level 0.024, step 1, values float32
opened ChimeraX session
> set bgColor black
> close session
> open
> /Users/mbell/sshfs/R_inulinivorans/InitialModel/job011/initial_model.mrc
Opened initial_model.mrc as #1, grid size 384,384,384, pixel 0.94, shown at
level 0.016, step 2, values float32
> open
> /Users/mbell/sshfs/R_inulinivorans/InitialModel/job010/initial_model.mrc
Opened initial_model.mrc as #2, grid size 384,384,384, pixel 0.94, shown at
level 0.0168, step 2, values float32
Unsupported scale factor (0.000000) detected on Display0
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-20.6.1
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 1968.120.12.0.0 (iBridge: 20.16.5060.0.0,0)
OS Loader Version: 577~170
Software:
System Software Overview:
System Version: macOS 13.4.1 (c) (22F770820d)
Kernel Version: Darwin 22.5.0
Time since boot: 5 days, 22 hours, 11 minutes
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL U2415:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 7MT0197I2H9S
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.21.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.6.0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
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