Changes between Initial Version and Version 1 of Ticket #9926


Ignore:
Timestamp:
Oct 9, 2023, 10:12:36 AM (2 years ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #9926

    • Property Cc Tom Goddard added
    • Property Component Unassigned → Window Toolkit
    • Property Owner set to Eric Pettersen
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → accepted
    • Property Summary ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0

  • Ticket #9926 – Description

    initial v1  
    24102410 
    24112411
    2412 > select add #2
    2413 
    2414 1959 atoms, 1959 bonds, 271 residues, 1 model selected 
    2415 
    2416 > style sel sphere
    2417 
    2418 Changed 1959 atom styles 
    2419 
    2420 > hide sel cartoons
    2421 
    2422 > select subtract #2
    2423 
    2424 Nothing selected 
    2425 
    2426 > select add #1
    2427 
    2428 149574 atoms, 149592 bonds, 19841 residues, 1 model selected 
    2429 
    2430 > style sel sphere
    2431 
    2432 Changed 149574 atom styles 
    2433 
    2434 > hide sel cartoons
    2435 
    2436 > hide sel atoms
    2437 
    2438 > show sel atoms
    2439 
    2440 > style sel ball
    2441 
    2442 Changed 149574 atom styles 
    2443 
    2444 > select subtract #1
    2445 
    2446 Nothing selected 
    2447 
    2448 > select add #2
    2449 
    2450 1959 atoms, 1959 bonds, 271 residues, 1 model selected 
    2451 
    2452 > style sel ball
    2453 
    2454 Changed 1959 atom styles 
    2455 
    2456 > select clear
    2457 
    2458 Drag select of 197 atoms, 184 bonds 
    2459 
    2460 > undo
    2461 
    2462 [Repeated 5 time(s)]
    2463 
    2464 > close #2
    2465 
    2466 > select clear
    2467 
    2468 > open
    2469 > /Users/mbell/sshfs/c0140_4_MotionCor2/RhFlaB_Modelangelo_SingleParticle_1/gnn_output_round_1/output.cif
    2470 
    2471 Summary of feedback from opening
    2472 /Users/mbell/sshfs/c0140_4_MotionCor2/RhFlaB_Modelangelo_SingleParticle_1/gnn_output_round_1/output.cif 
    2473 --- 
    2474 warnings | Missing entity information. Treating each chain as a separate
    2475 entity. 
    2476 Missing or incomplete entity_poly_seq table. Inferred polymer connectivity. 
    2477  
    2478 Chain information for output.cif #2 
    2479 --- 
    2480 Chain | Description 
    2481 E | No description available 
    2482  
    2483 Drag select of 127 atoms, 267 residues, 101 bonds 
    2484 
    2485 > select add #2
    2486 
    2487 1959 atoms, 1959 bonds, 271 residues, 1 model selected 
    2488 
    2489 > select subtract #2
    2490 
    2491 Nothing selected 
    2492 
    2493 > select add #2
    2494 
    2495 1959 atoms, 1959 bonds, 271 residues, 1 model selected 
    2496 
    2497 > show sel cartoons
    2498 
    2499 > hide sel atoms
    2500 
    2501 [Repeated 2 time(s)]
    2502 
    2503 > show sel atoms
    2504 
    2505 > hide sel cartoons
    2506 
    2507 [Repeated 1 time(s)]
    2508 
    2509 > style sel ball
    2510 
    2511 Changed 1959 atom styles 
    2512 
    2513 > select clear
    2514 
    2515 > select add #2
    2516 
    2517 1959 atoms, 1959 bonds, 271 residues, 1 model selected 
    2518 
    2519 > select add #1
    2520 
    2521 151533 atoms, 151551 bonds, 20112 residues, 2 models selected 
    2522 
    2523 > select subtract #2
    2524 
    2525 149574 atoms, 149592 bonds, 19841 residues, 1 model selected 
    2526 
    2527 > hide sel cartoons
    2528 
    2529 > show sel atoms
    2530 
    2531 > style sel ball
    2532 
    2533 Changed 149574 atom styles 
    2534 
    2535 > select clear
    2536 
    2537 > align #2 #1
    2538 
    2539 Missing required "to_atoms" argument 
    2540 
    2541 > align #2 toAtoms #1
    2542 
    2543 Unequal number of atoms to pair, 1959 and 149574 
    2544 Drag select of 1959 atoms, 1959 bonds 
    2545 Drag select of 3876 atoms, 3889 bonds 
    2546 
    2547 > select clear
    2548 
    2549 > open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
    2550 > fitting/RHom Model.pdb"
    2551 
    2552 Chain information for RHom Model.pdb #3 
    2553 --- 
    2554 Chain | Description 
    2555 A | No description available 
    2556  
    2557 
    2558 > close #3
    2559 
    2560 > open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
    2561 > fitting/Rhom_single_Map_3.1A.mrc"
    2562 
    2563 Opened Rhom_single_Map_3.1A.mrc as #3, grid size 62,90,171, pixel
    2564 0.94,0.94,0.94, shown at level 0.0155, step 1, values float32 
    2565 
    2566 > save "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
    2567 > fitting/Rhom_Modelangelo_Structure.cxs"
    2568 
    2569 ——— End of log from Tue Jul 4 11:16:35 2023 ———
    2570 
    2571 opened ChimeraX session 
    2572 
    2573 > close #1
    2574 
    2575 > select add #2
    2576 
    2577 1959 atoms, 1959 bonds, 271 residues, 1 model selected 
    2578 
    2579 > select subtract #2
    2580 
    2581 Nothing selected 
    2582 
    2583 > select add #3
    2584 
    2585 2 models selected 
    2586 
    2587 > select subtract #3
    2588 
    2589 Nothing selected 
    2590 Drag select of 1959 atoms, 1959 bonds 
    2591 
    2592 > ui mousemode right "translate selected models"
    2593 
    2594 > view matrix models #2,1,0,0,97.909,0,1,0,86.342,0,0,1,96.353
    2595 
    2596 > view matrix models #2,1,0,0,85.258,0,1,0,58.37,0,0,1,93.379
    2597 
    2598 > view matrix models #2,1,0,0,66.895,0,1,0,48.042,0,0,1,126.37
    2599 
    2600 > view matrix models #2,1,0,0,64.68,0,1,0,50.732,0,0,1,134.58
    2601 
    2602 > view matrix models #2,1,0,0,66.68,0,1,0,54.327,0,0,1,137.92
    2603 
    2604 > ui tool show "Fit in Map"
    2605 
    2606 > fitmap #2 inMap #3
    2607 
    2608 Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
    2609 atoms 
    2610 average map value = 0.01058, steps = 108 
    2611 shifted from previous position = 4.64 
    2612 rotated from previous position = 6.55 degrees 
    2613 atoms outside contour = 1344, contour level = 0.015457 
    2614  
    2615 Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
    2616 coordinates: 
    2617 Matrix rotation and translation 
    2618 0.99347128 0.10820489 -0.03614570 60.82207281 
    2619 -0.10821022 0.99412638 0.00181464 68.46264592 
    2620 0.03612974 0.00210855 0.99934488 132.41140434 
    2621 Axis 0.00128814 -0.31676814 -0.94850213 
    2622 Axis point 231.62189310 -549.87806515 0.00000000 
    2623 Rotation angle (degrees) 6.55071146 
    2624 Shift along axis -147.20093620 
    2625  
    2626 
    2627 > select clear
    2628 
    2629 > select add #2
    2630 
    2631 1959 atoms, 1959 bonds, 271 residues, 1 model selected 
    2632 
    2633 > view matrix models
    2634 > #2,0.99347,0.1082,-0.036146,60.933,-0.10821,0.99413,0.0018146,65.972,0.03613,0.0021085,0.99934,127.37
    2635 
    2636 > fitmap #2 inMap #3
    2637 
    2638 Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
    2639 atoms 
    2640 average map value = 0.02421, steps = 72 
    2641 shifted from previous position = 1.47 
    2642 rotated from previous position = 6.52 degrees 
    2643 atoms outside contour = 658, contour level = 0.015457 
    2644  
    2645 Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
    2646 coordinates: 
    2647 Matrix rotation and translation 
    2648 0.99999959 0.00029316 -0.00085220 67.73248431 
    2649 -0.00029329 0.99999995 -0.00015454 57.38358651 
    2650 0.00085216 0.00015479 0.99999962 130.55639485 
    2651 Axis 0.16914069 -0.93196347 -0.32067976 
    2652 Axis point -121595.67301666 0.00000000 96187.38249521 
    2653 Rotation angle (degrees) 0.05239076 
    2654 Shift along axis -83.88988135 
    2655  
    2656 
    2657 > fitmap #2 inMap #3
    2658 
    2659 Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
    2660 atoms 
    2661 average map value = 0.0242, steps = 28 
    2662 shifted from previous position = 0.0226 
    2663 rotated from previous position = 0.0709 degrees 
    2664 atoms outside contour = 661, contour level = 0.015457 
    2665  
    2666 Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
    2667 coordinates: 
    2668 Matrix rotation and translation 
    2669 0.99999947 -0.00088475 -0.00053198 67.83256327 
    2670 0.00088456 0.99999954 -0.00035732 57.30633573 
    2671 0.00053229 0.00035685 0.99999979 130.55894477 
    2672 Axis 0.32688814 -0.48713399 0.80984234 
    2673 Axis point -119829.74249550 39797.50462547 0.00000000 
    2674 Rotation angle (degrees) 0.06258882 
    2675 Shift along axis 99.98995751 
    2676  
    2677 
    2678 > fitmap #2 inMap #3
    2679 
    2680 Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
    2681 atoms 
    2682 average map value = 0.0242, steps = 28 
    2683 shifted from previous position = 0.0231 
    2684 rotated from previous position = 0.0261 degrees 
    2685 atoms outside contour = 656, contour level = 0.015457 
    2686  
    2687 Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
    2688 coordinates: 
    2689 Matrix rotation and translation 
    2690 0.99999904 -0.00131799 -0.00042270 67.84532631 
    2691 0.00131788 0.99999910 -0.00026886 57.24851943 
    2692 0.00042306 0.00026830 0.99999987 130.58374318 
    2693 Axis 0.19049067 -0.29992730 0.93474965 
    2694 Axis point -70229.22392782 34499.11365366 0.00000000 
    2695 Rotation angle (degrees) 0.08078342 
    2696 Shift along axis 117.81661662 
    2697  
    2698 
    2699 > view matrix models
    2700 > #2,1,-0.001318,-0.0004227,67.919,0.0013179,1,-0.00026886,56.884,0.00042306,0.0002683,1,130.74
    2701 
    2702 > fitmap #2 inMap #3
    2703 
    2704 Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
    2705 atoms 
    2706 average map value = 0.0242, steps = 40 
    2707 shifted from previous position = 0.403 
    2708 rotated from previous position = 0.0144 degrees 
    2709 atoms outside contour = 657, contour level = 0.015457 
    2710  
    2711 Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
    2712 coordinates: 
    2713 Matrix rotation and translation 
    2714 0.99999933 -0.00111730 -0.00031362 67.82102931 
    2715 0.00111724 0.99999936 -0.00016595 57.25935141 
    2716 0.00031381 0.00016560 0.99999994 130.60311006 
    2717 Axis 0.14141145 -0.26761422 0.95309256 
    2718 Axis point -79667.34121350 45720.14244302 0.00000000 
    2719 Rotation angle (degrees) 0.06716538 
    2720 Shift along axis 118.74410585 
    2721  
    2722 
    2723 > fitmap #2 inMap #3
    2724 
    2725 Fit molecule output.cif (#2) to map Rhom_single_Map_3.1A.mrc (#3) using 1959
    2726 atoms 
    2727 average map value = 0.0242, steps = 28 
    2728 shifted from previous position = 0.0197 
    2729 rotated from previous position = 0.0182 degrees 
    2730 atoms outside contour = 661, contour level = 0.015457 
    2731  
    2732 Position of output.cif (#2) relative to Rhom_single_Map_3.1A.mrc (#3)
    2733 coordinates: 
    2734 Matrix rotation and translation 
    2735 0.99999946 -0.00091709 -0.00048321 67.83042491 
    2736 0.00091693 0.99999952 -0.00034537 57.30265852 
    2737 0.00048353 0.00034493 0.99999982 130.56466862 
    2738 Axis 0.31591135 -0.44241962 0.83932408 
    2739 Axis point -113457.17241304 37631.25557227 0.00000000 
    2740 Rotation angle (degrees) 0.06259891 
    2741 Shift along axis 105.66265040 
    2742  
    2743 
    2744 > select clear
    2745 
    2746 > open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
    2747 > fitting/RHom Model.pdb"
    2748 
    2749 Chain information for RHom Model.pdb #1 
    2750 --- 
    2751 Chain | Description 
    2752 A | No description available 
    2753  
    2754 
    2755 > select add #1
    2756 
    2757 3810 atoms, 3847 bonds, 506 residues, 1 model selected 
    2758 
    2759 > view matrix models #1,1,0,0,-13.922,0,1,0,9.0035,0,0,1,43.758
    2760 
    2761 > view matrix models #1,1,0,0,-30.419,0,1,0,15.254,0,0,1,92.603
    2762 
    2763 > view matrix models #1,1,0,0,-15.265,0,1,0,3.307,0,0,1,43.511
    2764 
    2765 > fitmap #1 inMap #3
    2766 
    2767 Fit molecule RHom Model.pdb (#1) to map Rhom_single_Map_3.1A.mrc (#3) using
    2768 3810 atoms 
    2769 average map value = 0.01007, steps = 720 
    2770 shifted from previous position = 16.7 
    2771 rotated from previous position = 0.685 degrees 
    2772 atoms outside contour = 2635, contour level = 0.015457 
    2773  
    2774 Position of RHom Model.pdb (#1) relative to Rhom_single_Map_3.1A.mrc (#3)
    2775 coordinates: 
    2776 Matrix rotation and translation 
    2777 0.99992970 0.01076969 -0.00496113 -0.94123681 
    2778 -0.01077734 0.99994077 -0.00151801 2.24301404 
    2779 0.00494448 0.00157137 0.99998654 49.16798211 
    2780 Axis 0.12918030 -0.41419617 -0.90097391 
    2781 Axis point -1532.19901378 -466.56587160 0.00000000 
    2782 Rotation angle (degrees) 0.68513803 
    2783 Shift along axis -45.34970608 
    2784  
    2785 
    2786 > fitmap #1 inMap #3
    2787 
    2788 Fit molecule RHom Model.pdb (#1) to map Rhom_single_Map_3.1A.mrc (#3) using
    2789 3810 atoms 
    2790 average map value = 0.01007, steps = 44 
    2791 shifted from previous position = 0.0105 
    2792 rotated from previous position = 0.00932 degrees 
    2793 atoms outside contour = 2636, contour level = 0.015457 
    2794  
    2795 Position of RHom Model.pdb (#1) relative to Rhom_single_Map_3.1A.mrc (#3)
    2796 coordinates: 
    2797 Matrix rotation and translation 
    2798 0.99993110 0.01065412 -0.00492772 -0.92615228 
    2799 -0.01066225 0.99994183 -0.00162793 2.25052608 
    2800 0.00491009 0.00168036 0.99998653 49.15868308 
    2801 Axis 0.13953767 -0.41494050 -0.89908488 
    2802 Axis point -1547.51953993 -515.86347939 0.00000000 
    2803 Rotation angle (degrees) 0.67922768 
    2804 Shift along axis -45.26089610 
    2805  
    2806 
    2807 > style sel ball
    2808 
    2809 Changed 3810 atom styles 
    2810 
    2811 > hide sel cartoons
    2812 
    2813 > show sel atoms
    2814 
    2815 > view matrix models
    2816 > #1,0.99993,0.010654,-0.0049277,-1.0602,-0.010662,0.99994,-0.0016279,2.4652,0.0049101,0.0016804,0.99999,49.468
    2817 
    2818 > view matrix models
    2819 > #1,0.99993,0.010654,-0.0049277,-1.0047,-0.010662,0.99994,-0.0016279,2.498,0.0049101,0.0016804,0.99999,49.456
    2820 
    2821 > fitmap #1 inMap #3
    2822 
    2823 Fit molecule RHom Model.pdb (#1) to map Rhom_single_Map_3.1A.mrc (#3) using
    2824 3810 atoms 
    2825 average map value = 0.01007, steps = 104 
    2826 shifted from previous position = 0.403 
    2827 rotated from previous position = 0.0245 degrees 
    2828 atoms outside contour = 2634, contour level = 0.015457 
    2829  
    2830 Position of RHom Model.pdb (#1) relative to Rhom_single_Map_3.1A.mrc (#3)
    2831 coordinates: 
    2832 Matrix rotation and translation 
    2833 0.99993549 0.01033040 -0.00472316 -0.91609743 
    2834 -0.01033730 0.99994553 -0.00143858 2.15987648 
    2835 0.00470805 0.00148732 0.99998781 49.21448192 
    2836 Axis 0.12773780 -0.41174421 -0.90230248 
    2837 Axis point -1597.34536237 -482.83433144 0.00000000 
    2838 Rotation angle (degrees) 0.65620887 
    2839 Shift along axis -45.41268578 
    2840  
    2841 
    2842 > select clear
    2843 
    2844 > hide #1 models
    2845 
    2846 > show #1 models
    2847 
    2848 > hide #2 models
    2849 
    2850 > show #2 models
    2851 
    2852 > hide #2 models
    2853 
    2854 > show #2 models
    2855 
    2856 > hide #!3 models
    2857 
    2858 > show #!3 models
    2859 
    2860 > hide #1 models
    2861 
    2862 > color #3 #b2b2b24f models
    2863 
    2864 > color #3 #b2b2b24a models
    2865 
    2866 > color #3 #b2b2b23c models
    2867 
    2868 > show #1 models
    2869 
    2870 > hide #2 models
    2871 
    2872 > hide #1 models
    2873 
    2874 > show #2 models
    2875 
    2876 > show #1 models
    2877 
    2878 > hide #2 models
    2879 
    2880 Drag select of 3 Rhom_single_Map_3.1A.mrc , 980 atoms, 995 bonds 
    2881 
    2882 > select clear
    2883 
    2884 Drag select of 3 Rhom_single_Map_3.1A.mrc , 744 atoms, 753 bonds 
    2885 
    2886 > select clear
    2887 
    2888 Drag select of 181 atoms, 185 bonds 
    2889 Drag select of 658 atoms, 661 bonds 
    2890 
    2891 > delete atoms sel
    2892 
    2893 > delete bonds sel
    2894 
    2895 Drag select of 3 Rhom_single_Map_3.1A.mrc , 60 atoms, 63 bonds, 1 pseudobonds 
    2896 
    2897 > select clear
    2898 
    2899 Drag select of 3 Rhom_single_Map_3.1A.mrc , 243 atoms, 246 bonds, 1
    2900 pseudobonds 
    2901 
    2902 > select clear
    2903 
    2904 Drag select of 3 Rhom_single_Map_3.1A.mrc , 209 atoms, 210 bonds, 1
    2905 pseudobonds 
    2906 
    2907 > select clear
    2908 
    2909 > ui tool show "Show Sequence Viewer"
    2910 
    2911 > sequence chain #2/E
    2912 
    2913 Alignment identifier is 2/E 
    2914 
    2915 > ui tool show "Show Sequence Viewer"
    2916 
    2917 > sequence chain #1/A
    2918 
    2919 Alignment identifier is 1/A 
    2920 
    2921 > select #2/E:1
    2922 
    2923 4 atoms, 3 bonds, 1 residue, 1 model selected 
    2924 
    2925 > select #2/E:1
    2926 
    2927 4 atoms, 3 bonds, 1 residue, 1 model selected 
    2928 
    2929 > select #2/E:8-33,44-98,105-128,179-232,236-262,264-266
    2930 
    2931 1381 atoms, 1379 bonds, 189 residues, 1 model selected 
    2932 
    2933 > select #2/E:1-2
    2934 
    2935 10 atoms, 9 bonds, 2 residues, 1 model selected 
    2936 
    2937 > select #2/E
    2938 
    2939 1936 atoms, 1940 bonds, 267 residues, 1 model selected 
    2940 
    2941 > select #1/A:506
    2942 
    2943 9 atoms, 8 bonds, 1 residue, 1 model selected 
    2944 
    2945 > select #1/A:419-506
    2946 
    2947 690 atoms, 695 bonds, 88 residues, 1 model selected 
    2948 
    2949 > select #1/A:506
    2950 
    2951 9 atoms, 8 bonds, 1 residue, 1 model selected 
    2952 
    2953 > select #1/A:417-506
    2954 
    2955 709 atoms, 714 bonds, 90 residues, 1 model selected 
    2956 
    2957 > select #1/A:417-506
    2958 
    2959 709 atoms, 714 bonds, 90 residues, 1 model selected 
    2960 
    2961 > select #1/A:417-506
    2962 
    2963 709 atoms, 714 bonds, 90 residues, 1 model selected 
    2964 
    2965 > select #1/A:417-506
    2966 
    2967 709 atoms, 714 bonds, 90 residues, 1 model selected 
    2968 
    2969 > select #1/A:408-410,417-506
    2970 
    2971 732 atoms, 736 bonds, 93 residues, 1 model selected 
    2972 
    2973 > select #1/A:416
    2974 
    2975 5 atoms, 4 bonds, 1 residue, 1 model selected 
    2976 
    2977 > select #1/A:411-416
    2978 
    2979 38 atoms, 37 bonds, 6 residues, 1 model selected 
    2980 
    2981 > select #1/A:410
    2982 
    2983 7 atoms, 6 bonds, 1 residue, 1 model selected 
    2984 
    2985 > select #1/A:407-410
    2986 
    2987 31 atoms, 30 bonds, 4 residues, 1 model selected 
    2988 
    2989 > select #1/A:405-406
    2990 
    2991 16 atoms, 15 bonds, 2 residues, 1 model selected 
    2992 
    2993 > select #1/A:401-406
    2994 
    2995 51 atoms, 51 bonds, 6 residues, 1 model selected 
    2996 
    2997 > select #1/A:400
    2998 
    2999 6 atoms, 5 bonds, 1 residue, 1 model selected 
    3000 
    3001 > select #1/A:392-400
    3002 
    3003 71 atoms, 71 bonds, 9 residues, 1 model selected 
    3004 
    3005 > volume #3 color #f1f1f13c
    3006 
    3007 > volume #3 color #f1f1f166
    3008 
    3009 > select #1/A:390-391
    3010 
    3011 16 atoms, 15 bonds, 2 residues, 1 model selected 
    3012 
    3013 > select #1/A:373-391
    3014 
    3015 140 atoms, 140 bonds, 19 residues, 1 model selected 
    3016 
    3017 > select #1/A:371-372
    3018 
    3019 20 atoms, 20 bonds, 2 residues, 1 model selected 
    3020 
    3021 > select #1/A:367-372
    3022 
    3023 46 atoms, 46 bonds, 6 residues, 1 model selected 
    3024 
    3025 > select #1/A:377
    3026 
    3027 4 atoms, 3 bonds, 1 residue, 1 model selected 
    3028 
    3029 > select #1/A:367-377
    3030 
    3031 80 atoms, 80 bonds, 11 residues, 1 model selected 
    3032 
    3033 > select #1/A:378
    3034 
    3035 7 atoms, 6 bonds, 1 residue, 1 model selected 
    3036 
    3037 > select #1/A:378-382
    3038 
    3039 40 atoms, 40 bonds, 5 residues, 1 model selected 
    3040 
    3041 > select #1/A:377
    3042 
    3043 4 atoms, 3 bonds, 1 residue, 1 model selected 
    3044 
    3045 > select #1/A:374-377
    3046 
    3047 27 atoms, 26 bonds, 4 residues, 1 model selected 
    3048 
    3049 > select #1/A:375
    3050 
    3051 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3052 
    3053 > select #1/A:159-375
    3054 
    3055 937 atoms, 940 bonds, 7 pseudobonds, 136 residues, 2 models selected 
    3056 
    3057 > select #1/A:375-376
    3058 
    3059 16 atoms, 15 bonds, 2 residues, 1 model selected 
    3060 
    3061 > select #1/A:164-376
    3062 
    3063 913 atoms, 915 bonds, 7 pseudobonds, 132 residues, 2 models selected 
    3064 
    3065 > select #1/A:163
    3066 
    3067 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3068 
    3069 > select #1/A:155-163
    3070 
    3071 63 atoms, 63 bonds, 9 residues, 1 model selected 
    3072 
    3073 > select #1/A:369
    3074 
    3075 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3076 
    3077 > select #1/A:367-369
    3078 
    3079 17 atoms, 16 bonds, 3 residues, 1 model selected 
    3080 
    3081 > select #1/A:377
    3082 
    3083 4 atoms, 3 bonds, 1 residue, 1 model selected 
    3084 
    3085 > select #1/A:369-377
    3086 
    3087 71 atoms, 71 bonds, 9 residues, 1 model selected 
    3088 
    3089 > select #1/A:375
    3090 
    3091 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3092 
    3093 > select #1/A:371-375
    3094 
    3095 42 atoms, 42 bonds, 5 residues, 1 model selected 
    3096 
    3097 > select #1/A:376-377
    3098 
    3099 12 atoms, 11 bonds, 2 residues, 1 model selected 
    3100 
    3101 > select #1/A:376-377
    3102 
    3103 12 atoms, 11 bonds, 2 residues, 1 model selected 
    3104 
    3105 > select #1/A:375
    3106 
    3107 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3108 
    3109 > select #1/A:375
    3110 
    3111 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3112 
    3113 > select #1/A:376
    3114 
    3115 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3116 
    3117 > select #1/A:376
    3118 
    3119 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3120 
    3121 > select #1/A:376
    3122 
    3123 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3124 
    3125 > select #1/A:224-376
    3126 
    3127 727 atoms, 731 bonds, 4 pseudobonds, 104 residues, 2 models selected 
    3128 
    3129 > select #1/A:376
    3130 
    3131 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3132 
    3133 > select #1/A:218-376
    3134 
    3135 759 atoms, 762 bonds, 5 pseudobonds, 110 residues, 2 models selected 
    3136 
    3137 > select #1/A:376
    3138 
    3139 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3140 
    3141 > select #1/A:218-376
    3142 
    3143 759 atoms, 762 bonds, 5 pseudobonds, 110 residues, 2 models selected 
    3144 
    3145 > select #1/A:326-376
    3146 
    3147 232 atoms, 231 bonds, 2 pseudobonds, 32 residues, 2 models selected 
    3148 
    3149 > select #1/A:175-376
    3150 
    3151 826 atoms, 827 bonds, 7 pseudobonds, 121 residues, 2 models selected 
    3152 
    3153 > select #1/A:376
    3154 
    3155 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3156 
    3157 > select #1/A:129-376
    3158 
    3159 1182 atoms, 1186 bonds, 7 pseudobonds, 167 residues, 2 models selected 
    3160 
    3161 > select #1/A:275-376
    3162 
    3163 601 atoms, 606 bonds, 2 pseudobonds, 83 residues, 2 models selected 
    3164 
    3165 > select #1/A:70-376
    3166 
    3167 1632 atoms, 1637 bonds, 7 pseudobonds, 226 residues, 2 models selected 
    3168 
    3169 > select #1/A:376
    3170 
    3171 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3172 
    3173 > select #1/A:194-376
    3174 
    3175 821 atoms, 823 bonds, 6 pseudobonds, 120 residues, 2 models selected 
    3176 
    3177 > select #1/A:376
    3178 
    3179 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3180 
    3181 > select #1/A:194-376
    3182 
    3183 821 atoms, 823 bonds, 6 pseudobonds, 120 residues, 2 models selected 
    3184 
    3185 > select #1/A:376
    3186 
    3187 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3188 
    3189 > select #1/A:174-376
    3190 
    3191 835 atoms, 836 bonds, 7 pseudobonds, 122 residues, 2 models selected 
    3192 
    3193 > select #1/A:376
    3194 
    3195 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3196 
    3197 > select #1/A:173-376
    3198 
    3199 842 atoms, 843 bonds, 7 pseudobonds, 123 residues, 2 models selected 
    3200 
    3201 > select #1/A:376
    3202 
    3203 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3204 
    3205 > select #1/A:168-376
    3206 
    3207 875 atoms, 876 bonds, 7 pseudobonds, 128 residues, 2 models selected 
    3208 
    3209 > select #1/A:376
    3210 
    3211 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3212 
    3213 > select #1/A:161-376
    3214 
    3215 932 atoms, 935 bonds, 7 pseudobonds, 135 residues, 2 models selected 
    3216 
    3217 > select #1/A:376
    3218 
    3219 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3220 
    3221 > select #1/A:154-376
    3222 
    3223 985 atoms, 988 bonds, 7 pseudobonds, 142 residues, 2 models selected 
    3224 
    3225 > select #1/A:376
    3226 
    3227 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3228 
    3229 > select #1/A:148-376
    3230 
    3231 1029 atoms, 1031 bonds, 7 pseudobonds, 148 residues, 2 models selected 
    3232 
    3233 > select #1/A:376-377
    3234 
    3235 12 atoms, 11 bonds, 2 residues, 1 model selected 
    3236 
    3237 > select #1/A:145-377
    3238 
    3239 1059 atoms, 1062 bonds, 7 pseudobonds, 152 residues, 2 models selected 
    3240 
    3241 > select #1/A:376
    3242 
    3243 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3244 
    3245 > select #1/A:139-376
    3246 
    3247 1099 atoms, 1102 bonds, 7 pseudobonds, 157 residues, 2 models selected 
    3248 
    3249 > select #1/A:376
    3250 
    3251 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3252 
    3253 > select #1/A:141-376
    3254 
    3255 1089 atoms, 1092 bonds, 7 pseudobonds, 155 residues, 2 models selected 
    3256 
    3257 > select #1/A:376-377
    3258 
    3259 12 atoms, 11 bonds, 2 residues, 1 model selected 
    3260 
    3261 > select #1/A:145-376
    3262 
    3263 1055 atoms, 1058 bonds, 7 pseudobonds, 151 residues, 2 models selected 
    3264 
    3265 > delete atoms (#!1 & sel)
    3266 
    3267 > delete bonds (#!1 & sel)
    3268 
    3269 > select #1/A:144
    3270 
    3271 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3272 
    3273 > select #1/A:141-144
    3274 
    3275 34 atoms, 33 bonds, 4 residues, 1 model selected 
    3276 
    3277 > select #1/A:144
    3278 
    3279 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3280 
    3281 > select #1/A:143-144
    3282 
    3283 18 atoms, 17 bonds, 2 residues, 1 model selected 
    3284 
    3285 > select #1/A:144
    3286 
    3287 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3288 
    3289 > select #1/A:142-144
    3290 
    3291 26 atoms, 25 bonds, 3 residues, 1 model selected 
    3292 
    3293 > select #1/A:144
    3294 
    3295 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3296 
    3297 > select #1/A:143-144
    3298 
    3299 18 atoms, 17 bonds, 2 residues, 1 model selected 
    3300 
    3301 > select #1/A:144
    3302 
    3303 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3304 
    3305 > select #1/A:144
    3306 
    3307 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3308 
    3309 > delete atoms sel
    3310 
    3311 > delete bonds sel
    3312 
    3313 > select #1/A:142-143
    3314 
    3315 15 atoms, 14 bonds, 2 residues, 1 model selected 
    3316 
    3317 > select #1/A:130-143
    3318 
    3319 109 atoms, 109 bonds, 14 residues, 1 model selected 
    3320 
    3321 > select #1/A:7-32,43-98,105-128,415-466,470-505
    3322 
    3323 1476 atoms, 1479 bonds, 194 residues, 1 model selected 
    3324 
    3325 > select #1/A:506
    3326 
    3327 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3328 
    3329 > select #1/A:377-506
    3330 
    3331 1010 atoms, 1018 bonds, 130 residues, 1 model selected 
    3332 
    3333 > view matrix models
    3334 > #1,0.99994,0.01033,-0.0047232,-0.94418,-0.010337,0.99995,-0.0014386,2.1369,0.004708,0.0014873,0.99999,49.25
    3335 
    3336 > select clear
    3337 
    3338 > molmap help
    3339 
    3340 Missing or invalid "atoms" argument: invalid atoms specifier 
    3341 
    3342 > molmap #1
    3343 
    3344 Missing or invalid "resolution" argument: Expected a number 
    3345 
    3346 > molmap #1 5
    3347 
    3348 Opened RHom Model.pdb map 5 as #4, grid size 38,51,102, pixel 1.67, shown at
    3349 level 0.0829, step 1, values float32 
    3350 
    3351 > molmap #1 3
    3352 
    3353 Opened RHom Model.pdb map 3 as #4, grid size 51,73,158, pixel 1, shown at
    3354 level 0.115, step 1, values float32 
    3355 
    3356 > color #4 #b2ffff4d models
    3357 
    3358 > color #4 #b2ffff56 models
    3359 
    3360 > color #4 #b2ffff57 models
    3361 
    3362 > volume style mesh
    3363 
    3364 > select add #4
    3365 
    3366 2 models selected 
    3367 
    3368 > select add #3
    3369 
    3370 4 models selected 
    3371 
    3372 > select add #2
    3373 
    3374 1959 atoms, 1959 bonds, 271 residues, 5 models selected 
    3375 
    3376 > select subtract #3
    3377 
    3378 1959 atoms, 1959 bonds, 271 residues, 3 models selected 
    3379 
    3380 > select subtract #4
    3381 
    3382 1959 atoms, 1959 bonds, 271 residues, 1 model selected 
    3383 
    3384 > select subtract #2
    3385 
    3386 Nothing selected 
    3387 
    3388 > select add #3
    3389 
    3390 2 models selected 
    3391 
    3392 > select subtract #3
    3393 
    3394 Nothing selected 
    3395 
    3396 > select add #3
    3397 
    3398 2 models selected 
    3399 
    3400 > volume sel style surface
    3401 
    3402 > color #4 #fffaa557 models
    3403 
    3404 > select clear
    3405 
    3406 > color #4 #fff2fc57 models
    3407 
    3408 > color #3 #f485a866 models
    3409 
    3410 > select clear
    3411 
    3412 > save "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
    3413 > fitting/Rhom_Model_Trimmed.pdb" models #1
    3414 
    3415 > open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
    3416 > fitting/Rhom_Model_Trimmed.pdb"
    3417 
    3418 Chain information for Rhom_Model_Trimmed.pdb #5 
    3419 --- 
    3420 Chain | Description 
    3421 A | No description available 
    3422  
    3423 
    3424 > hide #!5 models
    3425 
    3426 > show #!5 models
    3427 
    3428 > hide #!5 models
    3429 
    3430 > show #!5 models
    3431 
    3432 > select add #5
    3433 
    3434 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    3435 
    3436 > save "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
    3437 > fitting/Rhom_Trimming.cxs"
    3438 
    3439 > open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
    3440 > fitting/Rhom_Flagella_Map_2RingMasked.mrc"
    3441 
    3442 Opened Rhom_Flagella_Map_2RingMasked.mrc as #6, grid size 200,201,275, pixel
    3443 0.94,0.94,0.94, shown at level 0.024, step 1, values float32 
    3444 
    3445 > open "/Users/mbell/sshfs/c0140_4_MotionCor2/Chimera projects/Rhom
    3446 > fitting/Rhom_Flagella_2ring_Structure.pdb"
    3447 
    3448 Chain information for Rhom_Flagella_2ring_Structure.pdb #7 
    3449 --- 
    3450 Chain | Description 
    3451 A B C D E F G H I J K L M N O P Q R S T U V | No description available 
    3452  
    3453 
    3454 > fitmap #7 inMap #6
    3455 
    3456 Fit molecule Rhom_Flagella_2ring_Structure.pdb (#7) to map
    3457 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 83820 atoms 
    3458 average map value = 0.007079, steps = 72 
    3459 shifted from previous position = 5.09 
    3460 rotated from previous position = 2.16 degrees 
    3461 atoms outside contour = 70476, contour level = 0.023968 
    3462  
    3463 Position of Rhom_Flagella_2ring_Structure.pdb (#7) relative to
    3464 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3465 Matrix rotation and translation 
    3466 0.99941328 0.00831391 -0.03322614 2.42391291 
    3467 -0.00779503 0.99984611 0.01571575 3.87752202 
    3468 0.03335168 -0.01544753 0.99932429 -1.39529499 
    3469 Axis -0.41410459 -0.88470112 -0.21405914 
    3470 Axis point 68.78778028 0.00000000 20.19534846 
    3471 Rotation angle (degrees) 2.15639429 
    3472 Shift along axis -4.13552589 
    3473  
    3474 
    3475 > show sel cartoons
    3476 
    3477 > hide sel atoms
    3478 
    3479 > hide sel cartoons
    3480 
    3481 [Repeated 1 time(s)]
    3482 
    3483 > select add #7
    3484 
    3485 85906 atoms, 86732 bonds, 1 pseudobond, 11405 residues, 3 models selected 
    3486 
    3487 > show sel cartoons
    3488 
    3489 > hide sel atoms
    3490 
    3491 > view matrix models
    3492 > #5,1,0,0,-2.1084,0,1,0,1.8671,0,0,1,-0.13608,#7,0.99941,0.0083139,-0.033226,0.31552,-0.007795,0.99985,0.015716,5.7446,0.033352,-0.015448,0.99932,-1.5314
    3493 
    3494 > fitmap #7 inMap #6
    3495 
    3496 Fit molecule Rhom_Flagella_2ring_Structure.pdb (#7) to map
    3497 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 83820 atoms 
    3498 average map value = 0.007079, steps = 56 
    3499 shifted from previous position = 2.82 
    3500 rotated from previous position = 0.00198 degrees 
    3501 atoms outside contour = 70482, contour level = 0.023968 
    3502  
    3503 Position of Rhom_Flagella_2ring_Structure.pdb (#7) relative to
    3504 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3505 Matrix rotation and translation 
    3506 0.99941342 0.00834530 -0.03321396 2.42053504 
    3507 -0.00782632 0.99984573 0.01572470 3.88499925 
    3508 0.03334006 -0.01545554 0.99932456 -1.39023132 
    3509 Axis -0.41433323 -0.88439166 -0.21489384 
    3510 Axis point 68.78858415 0.00000000 20.01684298 
    3511 Rotation angle (degrees) 2.15637773 
    3512 Shift along axis -4.14001690 
    3513  
    3514 
    3515 > select clear
    3516 
    3517 > hide #!1 models
    3518 
    3519 > show #!1 models
    3520 
    3521 > hide #!1 models
    3522 
    3523 > show #2 models
    3524 
    3525 > close #2
    3526 
    3527 > hide #!3 models
    3528 
    3529 > show #!3 models
    3530 
    3531 > show #!1 models
    3532 
    3533 > close #1
    3534 
    3535 > hide #!3 models
    3536 
    3537 > show #!3 models
    3538 
    3539 > hide #!3 models
    3540 
    3541 > show #!3 models
    3542 
    3543 > hide #!3 models
    3544 
    3545 > show #!3 models
    3546 
    3547 > close #3
    3548 
    3549 > hide #!4 models
    3550 
    3551 > show #!4 models
    3552 
    3553 > hide #!5 models
    3554 
    3555 > show #!5 models
    3556 
    3557 > fitmap #7 inMap #6
    3558 
    3559 Fit molecule Rhom_Flagella_2ring_Structure.pdb (#7) to map
    3560 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 83820 atoms 
    3561 average map value = 0.00708, steps = 48 
    3562 shifted from previous position = 0.0159 
    3563 rotated from previous position = 0.00304 degrees 
    3564 atoms outside contour = 70464, contour level = 0.023968 
    3565  
    3566 Position of Rhom_Flagella_2ring_Structure.pdb (#7) relative to
    3567 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3568 Matrix rotation and translation 
    3569 0.99941410 0.00833251 -0.03319663 2.40998956 
    3570 -0.00781543 0.99984658 0.01567579 3.89184423 
    3571 0.03332215 -0.01540716 0.99932590 -1.38371237 
    3572 Axis -0.41346098 -0.88482317 -0.21479755 
    3573 Axis point 68.63053710 0.00000000 19.78779146 
    3574 Rotation angle (degrees) 2.15418383 
    3575 Shift along axis -4.14281255 
    3576  
    3577 
    3578 > select add #7
    3579 
    3580 83820 atoms, 84634 bonds, 11132 residues, 1 model selected 
    3581 
    3582 > view matrix models
    3583 > #7,0.99941,0.0083325,-0.033197,3.1068,-0.0078154,0.99985,0.015676,3.3793,0.033322,-0.015407,0.99933,0.10347
    3584 
    3585 > fitmap #7 inMap #6
    3586 
    3587 Fit molecule Rhom_Flagella_2ring_Structure.pdb (#7) to map
    3588 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 83820 atoms 
    3589 average map value = 0.00708, steps = 56 
    3590 shifted from previous position = 1.72 
    3591 rotated from previous position = 0.00412 degrees 
    3592 atoms outside contour = 70477, contour level = 0.023968 
    3593  
    3594 Position of Rhom_Flagella_2ring_Structure.pdb (#7) relative to
    3595 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3596 Matrix rotation and translation 
    3597 0.99941227 0.00830541 -0.03325853 2.43164580 
    3598 -0.00778821 0.99984720 0.01565023 3.89135691 
    3599 0.03338343 -0.01538201 0.99932424 -1.39751439 
    3600 Axis -0.41236698 -0.88556110 -0.21385746 
    3601 Axis point 68.86095184 0.00000000 20.44270297 
    3602 Rotation angle (degrees) 2.15637569 
    3603 Shift along axis -4.14989586 
    3604  
    3605 
    3606 > color #6 #b2b2ff7e models
    3607 
    3608 > color #6 #b2b2ff88 models
    3609 
    3610 > color #6 #b2b2ff79 models
    3611 
    3612 > hide #!4 models
    3613 
    3614 > color #6 #b2b2ff78 models
    3615 
    3616 > hide #!5 models
    3617 
    3618 > fitmap #7 inMap #6
    3619 
    3620 Fit molecule Rhom_Flagella_2ring_Structure.pdb (#7) to map
    3621 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 83820 atoms 
    3622 average map value = 0.00708, steps = 44 
    3623 shifted from previous position = 0.00914 
    3624 rotated from previous position = 0.0027 degrees 
    3625 atoms outside contour = 70494, contour level = 0.023968 
    3626  
    3627 Position of Rhom_Flagella_2ring_Structure.pdb (#7) relative to
    3628 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3629 Matrix rotation and translation 
    3630 0.99941181 0.00833580 -0.03326494 2.43053488 
    3631 -0.00781730 0.99984640 0.01568656 3.89431559 
    3632 0.03339059 -0.01541729 0.99932346 -1.40061749 
    3633 Axis -0.41302053 -0.88510267 -0.21449315 
    3634 Axis point 69.01866255 0.00000000 20.31497808 
    3635 Rotation angle (degrees) 2.15793247 
    3636 Shift along axis -4.15030705 
    3637  
    3638 
    3639 > show #!5 models
    3640 
    3641 > fitmap #5 inMap #6
    3642 
    3643 Fit molecule Rhom_Model_Trimmed.pdb (#5) to map
    3644 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    3645 average map value = 0.0153, steps = 76 
    3646 shifted from previous position = 3.31 
    3647 rotated from previous position = 0.248 degrees 
    3648 atoms outside contour = 1412, contour level = 0.023968 
    3649  
    3650 Position of Rhom_Model_Trimmed.pdb (#5) relative to
    3651 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3652 Matrix rotation and translation 
    3653 0.99999230 0.00391234 -0.00029560 -0.47865793 
    3654 -0.00391179 0.99999065 0.00184592 0.18264322 
    3655 0.00030282 -0.00184475 0.99999825 1.71855537 
    3656 Axis -0.42560545 -0.06900949 -0.90227362 
    3657 Axis point 22.06071992 270.28166264 0.00000000 
    3658 Rotation angle (degrees) 0.24842319 
    3659 Shift along axis -1.35949187 
    3660  
    3661 
    3662 > hide #7 models
    3663 
    3664 > show #!5 cartoons
    3665 
    3666 > select add #5
    3667 
    3668 85906 atoms, 86732 bonds, 1 pseudobond, 11405 residues, 3 models selected 
    3669 
    3670 > hide sel & #!5 atoms
    3671 
    3672 > show sel & #!5 cartoons
    3673 
    3674 > select subtract #7
    3675 
    3676 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    3677 
    3678 > show sel cartoons
    3679 
    3680 > show sel atoms
    3681 
    3682 > select clear
    3683 
    3684 > fitmap #5 inMap #6
    3685 
    3686 Fit molecule Rhom_Model_Trimmed.pdb (#5) to map
    3687 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    3688 average map value = 0.0153, steps = 40 
    3689 shifted from previous position = 0.0102 
    3690 rotated from previous position = 0.00877 degrees 
    3691 atoms outside contour = 1413, contour level = 0.023968 
    3692  
    3693 Position of Rhom_Model_Trimmed.pdb (#5) relative to
    3694 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3695 Matrix rotation and translation 
    3696 0.99999286 0.00376392 -0.00032722 -0.44193462 
    3697 -0.00376331 0.99999125 0.00182630 0.16961057 
    3698 0.00033409 -0.00182505 0.99999828 1.71025773 
    3699 Axis -0.43508939 -0.07880068 -0.89693237 
    3700 Axis point 16.05824877 274.08315600 0.00000000 
    3701 Rotation angle (degrees) 0.24041924 
    3702 Shift along axis -1.35506987 
    3703  
    3704 
    3705 > select add #5
    3706 
    3707 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    3708 
    3709 > view matrix models
    3710 > #5,0.99999,0.0037639,-0.00032722,-0.64276,-0.0037633,0.99999,0.0018263,-0.47486,0.00033409,-0.0018251,1,2.0523
    3711 
    3712 > fitmap #5 inMap #6
    3713 
    3714 Fit molecule Rhom_Model_Trimmed.pdb (#5) to map
    3715 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    3716 average map value = 0.0153, steps = 44 
    3717 shifted from previous position = 0.747 
    3718 rotated from previous position = 0.00745 degrees 
    3719 atoms outside contour = 1414, contour level = 0.023968 
    3720  
    3721 Position of Rhom_Model_Trimmed.pdb (#5) relative to
    3722 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3723 Matrix rotation and translation 
    3724 0.99999253 0.00384244 -0.00043079 -0.43723374 
    3725 -0.00384165 0.99999095 0.00182856 0.17026178 
    3726 0.00043781 -0.00182689 0.99999824 1.69063262 
    3727 Axis -0.42736499 -0.10155018 -0.89835779 
    3728 Axis point 8.03288068 263.87014248 0.00000000 
    3729 Rotation angle (degrees) 0.24503993 
    3730 Shift along axis -1.34922472 
    3731  
    3732 
    3733 > combine #5 #1
    3734 
    3735 [Repeated 1 time(s)]Remapping chain ID 'A' in copy of Rhom_Model_Trimmed.pdb
    3736 #1 to 'B' 
    3737 
    3738 > hide #!1 models
    3739 
    3740 > show #!1 models
    3741 
    3742 > color #1 #fd96c7ff
    3743 
    3744 > select add #1
    3745 
    3746 4172 atoms, 4196 bonds, 2 pseudobonds, 546 residues, 4 models selected 
    3747 
    3748 > select subtract #5
    3749 
    3750 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    3751 
    3752 > view matrix models
    3753 > #1,0.99999,0.0038424,-0.00043079,-8.2082,-0.0038416,0.99999,0.0018286,11.123,0.00043781,-0.0018269,1,-18.325
    3754 
    3755 > fitmap #1 inMap #6
    3756 
    3757 Fit molecule copy of Rhom_Model_Trimmed.pdb (#1) to map
    3758 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    3759 average map value = 0.005191, steps = 84 
    3760 shifted from previous position = 3.77 
    3761 rotated from previous position = 4.56 degrees 
    3762 atoms outside contour = 1910, contour level = 0.023968 
    3763  
    3764 Position of copy of Rhom_Model_Trimmed.pdb (#1) relative to
    3765 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3766 Matrix rotation and translation 
    3767 0.99765271 0.03748498 0.05730572 -22.36928345 
    3768 -0.03508476 0.99848738 -0.04233216 27.34354371 
    3769 -0.05880585 0.04022223 0.99745879 -16.74397663 
    3770 Axis 0.51633326 0.72621533 -0.45388463 
    3771 Axis point -184.69132144 0.00000000 526.11050575 
    3772 Rotation angle (degrees) 4.58528567 
    3773 Shift along axis 15.90712927 
    3774  
    3775 
    3776 > view matrix models
    3777 > #1,0.99765,0.037485,0.057306,-22.911,-0.035085,0.99849,-0.042332,28.783,-0.058806,0.040222,0.99746,-20.078
    3778 
    3779 > view matrix models
    3780 > #1,0.99765,0.037485,0.057306,-23.261,-0.035085,0.99849,-0.042332,28.874,-0.058806,0.040222,0.99746,-21.66
    3781 
    3782 > fitmap #1 inMap #6
    3783 
    3784 Fit molecule copy of Rhom_Model_Trimmed.pdb (#1) to map
    3785 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    3786 average map value = 0.0154, steps = 408 
    3787 shifted from previous position = 7.99 
    3788 rotated from previous position = 30.8 degrees 
    3789 atoms outside contour = 1391, contour level = 0.023968 
    3790  
    3791 Position of copy of Rhom_Model_Trimmed.pdb (#1) relative to
    3792 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3793 Matrix rotation and translation 
    3794 0.84225914 0.53907063 0.00154885 -69.12736628 
    3795 -0.53907251 0.84225837 0.00129107 125.40398688 
    3796 -0.00060855 -0.00192236 0.99999797 -26.30325313 
    3797 Axis -0.00298050 0.00200101 -0.99999356 
    3798 Axis point 179.66583058 180.65953785 0.00000000 
    3799 Rotation angle (degrees) 32.62069505 
    3800 Shift along axis 26.76005324 
    3801  
    3802 
    3803 > fitmap #1 inMap #6
    3804 
    3805 Fit molecule copy of Rhom_Model_Trimmed.pdb (#1) to map
    3806 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    3807 average map value = 0.0154, steps = 40 
    3808 shifted from previous position = 0.0117 
    3809 rotated from previous position = 0.125 degrees 
    3810 atoms outside contour = 1393, contour level = 0.023968 
    3811  
    3812 Position of copy of Rhom_Model_Trimmed.pdb (#1) relative to
    3813 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3814 Matrix rotation and translation 
    3815 0.84113355 0.54082639 0.00108187 -69.10754731 
    3816 -0.54082747 0.84113178 0.00172520 125.76282670 
    3817 0.00002304 -0.00203623 0.99999793 -26.37805333 
    3818 Axis -0.00347745 0.00097889 -0.99999347 
    3819 Axis point 179.51408955 180.34127727 0.00000000 
    3820 Rotation angle (degrees) 32.74018996 
    3821 Shift along axis 26.74130747 
    3822  
    3823 
    3824 > fitmap #5 inMap #6
    3825 
    3826 Fit molecule Rhom_Model_Trimmed.pdb (#5) to map
    3827 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    3828 average map value = 0.0153, steps = 28 
    3829 shifted from previous position = 0.0237 
    3830 rotated from previous position = 0.00496 degrees 
    3831 atoms outside contour = 1414, contour level = 0.023968 
    3832  
    3833 Position of Rhom_Model_Trimmed.pdb (#5) relative to
    3834 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    3835 Matrix rotation and translation 
    3836 0.99999234 0.00389474 -0.00039177 -0.45004284 
    3837 -0.00389400 0.99999064 0.00188554 0.18321592 
    3838 0.00039911 -0.00188400 0.99999815 1.72182169 
    3839 Axis -0.43382623 -0.09102011 -0.89638727 
    3840 Axis point 14.50489729 267.60781804 0.00000000 
    3841 Rotation angle (degrees) 0.24892335 
    3842 Shift along axis -1.36485500 
    3843  
    3844 
    3845 > show #7 models
    3846 
    3847 > hide #7 models
    3848 
    3849 > combine #5 #2
    3850 
    3851 Remapping chain ID 'A' in combination #2 to 'C' 
    3852 
    3853 > color #2 #fdd19dff
    3854 
    3855 > color #2 #fddb9dff
    3856 
    3857 > hide #!6 models
    3858 
    3859 > show #!6 models
    3860 
    3861 > hide #!5 models
    3862 
    3863 > show #!5 models
    3864 
    3865 > hide #!5 models
    3866 
    3867 > hide #!3 models
    3868 
    3869 > show #!3 models
    3870 
    3871 > show #!5 models
    3872 
    3873 > select add #3
    3874 
    3875 8344 atoms, 8392 bonds, 4 pseudobonds, 1092 residues, 4 models selected 
    3876 
    3877 > select subtract #1
    3878 
    3879 6258 atoms, 6294 bonds, 3 pseudobonds, 819 residues, 2 models selected 
    3880 
    3881 > view matrix models
    3882 > #3,0.99999,0.0038947,-0.00039177,2.8054,-0.003894,0.99999,0.0018855,-6.6065,0.00039911,-0.001884,1,6.9339
    3883 
    3884 > hide #!5 models
    3885 
    3886 > show #!5 models
    3887 
    3888 > view matrix models
    3889 > #3,0.99999,0.0038947,-0.00039177,-7.2567,-0.003894,0.99999,0.0018855,18.161,0.00039911,-0.001884,1,10.691
    3890 
    3891 > view matrix models
    3892 > #3,0.99999,0.0038947,-0.00039177,35.265,-0.003894,0.99999,0.0018855,7.4213,0.00039911,-0.001884,1,-26.639
    3893 
    3894 > view matrix models
    3895 > #3,0.99999,0.0038947,-0.00039177,10.281,-0.003894,0.99999,0.0018855,-13.538,0.00039911,-0.001884,1,-20.295
    3896 
    3897 > view matrix models
    3898 > #3,0.99999,0.0038947,-0.00039177,10.615,-0.003894,0.99999,0.0018855,-8.7424,0.00039911,-0.001884,1,-20.598
    3899 
    3900 > select subtract #3
    3901 
    3902 Nothing selected 
    3903 
    3904 > select add #2
    3905 
    3906 4172 atoms, 4196 bonds, 2 pseudobonds, 546 residues, 2 models selected 
    3907 
    3908 > select subtract #2
    3909 
    3910 Nothing selected 
    3911 
    3912 > select add #3
    3913 
    3914 6258 atoms, 6294 bonds, 3 pseudobonds, 819 residues, 2 models selected 
    3915 
    3916 > fitmap #3 inMap #6
    3917 
    3918 Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    3919 using 6258 atoms 
    3920 average map value = 0.006688, steps = 476 
    3921 shifted from previous position = 4.14 
    3922 rotated from previous position = 25 degrees 
    3923 atoms outside contour = 5535, contour level = 0.023968 
    3924  
    3925 Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
    3926 (#6) coordinates: 
    3927 Matrix rotation and translation 
    3928 0.90812779 -0.41401745 0.06239770 77.94184571 
    3929 0.41485838 0.90988581 -0.00057409 -59.96311470 
    3930 -0.05653710 0.02640756 0.99805120 -17.02822039 
    3931 Axis 0.03220537 0.14196088 0.98934823 
    3932 Axis point 169.81349364 152.35244006 0.00000000 
    3933 Rotation angle (degrees) 24.76515557 
    3934 Shift along axis -22.84911021 
    3935  
    3936 
    3937 > fitmap #3 inMap #6
    3938 
    3939 Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    3940 using 6258 atoms 
    3941 average map value = 0.006689, steps = 156 
    3942 shifted from previous position = 0.0202 
    3943 rotated from previous position = 0.0294 degrees 
    3944 atoms outside contour = 5535, contour level = 0.023968 
    3945  
    3946 Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
    3947 (#6) coordinates: 
    3948 Matrix rotation and translation 
    3949 0.90793420 -0.41442494 0.06250971 78.01015525 
    3950 0.41528044 0.90969312 -0.00076451 -59.94095729 
    3951 -0.05654782 0.02665318 0.99804406 -17.05719588 
    3952 Axis 0.03269256 0.14196295 0.98933196 
    3953 Axis point 169.66212220 152.34745749 0.00000000 
    3954 Rotation angle (degrees) 24.79204732 
    3955 Shift along axis -22.83427211 
    3956  
    3957 
    3958 > show #7 models
    3959 
    3960 > hide #7 models
    3961 
    3962 > show #7 models
    3963 
    3964 > hide #!3 models
    3965 
    3966 > show #!3 models
    3967 
    3968 > hide #7 models
    3969 
    3970 > view matrix models
    3971 > #3,0.90793,-0.41442,0.06251,81.699,0.41528,0.90969,-0.00076451,-57.464,-0.056548,0.026653,0.99804,-19
    3972 
    3973 > fitmap #3 inMap #6
    3974 
    3975 Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    3976 using 6258 atoms 
    3977 average map value = 0.01535, steps = 104 
    3978 shifted from previous position = 3.68 
    3979 rotated from previous position = 8.86 degrees 
    3980 atoms outside contour = 4209, contour level = 0.023968 
    3981  
    3982 Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
    3983 (#6) coordinates: 
    3984 Matrix rotation and translation 
    3985 0.84245655 -0.53876134 -0.00178561 126.25883740 
    3986 0.53876377 0.84245573 0.00139432 -69.10144592 
    3987 0.00075309 -0.00213667 0.99999743 -21.77388096 
    3988 Axis -0.00327692 -0.00235603 0.99999186 
    3989 Axis point 181.33869092 181.18957997 0.00000000 
    3990 Rotation angle (degrees) 32.59973870 
    3991 Shift along axis -22.02463874 
    3992  
    3993 
    3994 > fitmap #3 inMap #6
    3995 
    3996 Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    3997 using 6258 atoms 
    3998 average map value = 0.01535, steps = 40 
    3999 shifted from previous position = 0.00589 
    4000 rotated from previous position = 0.0552 degrees 
    4001 atoms outside contour = 4210, contour level = 0.023968 
    4002  
    4003 Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
    4004 (#6) coordinates: 
    4005 Matrix rotation and translation 
    4006 0.84196449 -0.53953062 -0.00158093 126.40224509 
    4007 0.53953275 0.84196305 0.00162223 -69.19804871 
    4008 0.00045584 -0.00221882 0.99999743 -21.71348659 
    4009 Axis -0.00355958 -0.00188751 0.99999188 
    4010 Axis point 181.35461909 181.01539454 0.00000000 
    4011 Rotation angle (degrees) 32.65206239 
    4012 Shift along axis -22.03263694 
    4013  
    4014 
    4015 > show #7 models
    4016 
    4017 > hide #!3 models
    4018 
    4019 > show #!3 models
    4020 
    4021 > hide #!3 models
    4022 
    4023 > show #!3 models
    4024 
    4025 > select add #2
    4026 
    4027 10430 atoms, 10490 bonds, 5 pseudobonds, 1365 residues, 4 models selected 
    4028 
    4029 > select add #1
    4030 
    4031 12516 atoms, 12588 bonds, 6 pseudobonds, 1638 residues, 6 models selected 
    4032 
    4033 > hide sel atoms
    4034 
    4035 > select subtract #2
    4036 
    4037 8344 atoms, 8392 bonds, 4 pseudobonds, 1092 residues, 4 models selected 
    4038 
    4039 > select subtract #1
    4040 
    4041 6258 atoms, 6294 bonds, 3 pseudobonds, 819 residues, 2 models selected 
    4042 
    4043 > select subtract #3
    4044 
    4045 Nothing selected 
    4046 
    4047 > hide #!3 models
    4048 
    4049 > show #!3 models
    4050 
    4051 > hide #7 models
    4052 
    4053 > fitmap #3 inMap #6
    4054 
    4055 Fit molecule combination (#3) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    4056 using 6258 atoms 
    4057 average map value = 0.01535, steps = 40 
    4058 shifted from previous position = 0.0139 
    4059 rotated from previous position = 0.00585 degrees 
    4060 atoms outside contour = 4207, contour level = 0.023968 
    4061  
    4062 Position of combination (#3) relative to Rhom_Flagella_Map_2RingMasked.mrc
    4063 (#6) coordinates: 
    4064 Matrix rotation and translation 
    4065 0.84191294 -0.53961117 -0.00154525 126.42393065 
    4066 0.53961322 0.84191148 0.00162458 -69.20645904 
    4067 0.00042432 -0.00220159 0.99999749 -21.72114946 
    4068 Axis -0.00354527 -0.00182497 0.99999205 
    4069 Axis point 181.35669738 181.01114380 0.00000000 
    4070 Rotation angle (degrees) 32.65753505 
    4071 Shift along axis -22.04288402 
    4072  
    4073 
    4074 > select add #2
    4075 
    4076 4172 atoms, 4196 bonds, 2 pseudobonds, 546 residues, 2 models selected 
    4077 
    4078 > view matrix models
    4079 > #2,0.99999,0.0038424,-0.00043079,4.3654,-0.0038416,0.99999,0.0018286,10.529,0.00043781,-0.0018269,1,1.9259
    4080 
    4081 > view matrix models
    4082 > #2,0.99999,0.0038424,-0.00043079,7.9345,-0.0038416,0.99999,0.0018286,7.4742,0.00043781,-0.0018269,1,-29.802
    4083 
    4084 > view matrix models
    4085 > #2,0.99999,0.0038424,-0.00043079,16.644,-0.0038416,0.99999,0.0018286,-2.213,0.00043781,-0.0018269,1,-48.376
    4086 
    4087 > fitmap #2 inMap #6
    4088 
    4089 Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    4090 using 4172 atoms 
    4091 average map value = 0.006569, steps = 324 
    4092 shifted from previous position = 2.14 
    4093 rotated from previous position = 18.1 degrees 
    4094 atoms outside contour = 3730, contour level = 0.023968 
    4095  
    4096 Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
    4097 (#6) coordinates: 
    4098 Matrix rotation and translation 
    4099 0.95081081 0.27007249 -0.15172226 17.84840141 
    4100 -0.27778238 0.96011931 -0.03174668 52.21684211 
    4101 0.13709757 0.07233086 0.98791321 -78.12541446 
    4102 Axis 0.16572646 -0.45989837 -0.87236932 
    4103 Axis point 264.37851951 10.96558232 0.00000000 
    4104 Rotation angle (degrees) 18.30069528 
    4105 Shift along axis 47.09772657 
    4106  
    4107 
    4108 > view matrix models
    4109 > #2,0.95081,0.27007,-0.15172,8.8325,-0.27778,0.96012,-0.031747,65.034,0.1371,0.072331,0.98791,-93.433
    4110 
    4111 > view matrix models
    4112 > #2,0.95081,0.27007,-0.15172,8.982,-0.27778,0.96012,-0.031747,62.538,0.1371,0.072331,0.98791,-93.42
    4113 
    4114 > fitmap #2 inMap #6
    4115 
    4116 Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    4117 using 4172 atoms 
    4118 average map value = 0.005749, steps = 488 
    4119 shifted from previous position = 9.58 
    4120 rotated from previous position = 20.8 degrees 
    4121 atoms outside contour = 3782, contour level = 0.023968 
    4122  
    4123 Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
    4124 (#6) coordinates: 
    4125 Matrix rotation and translation 
    4126 0.99077264 -0.07176632 -0.11497464 43.16078320 
    4127 0.07538637 0.99677657 0.02744751 -19.52567711 
    4128 0.11263422 -0.03586176 0.99298916 -71.33876119 
    4129 Axis -0.22746089 -0.81776521 0.52869803 
    4130 Axis point 502.16529550 0.00000000 272.64229203 
    4131 Rotation angle (degrees) 7.99954085 
    4132 Shift along axis -31.56663296 
    4133  
    4134 
    4135 > view matrix models
    4136 > #2,0.99077,-0.071766,-0.11497,40.518,0.075386,0.99678,0.027448,-16.652,0.11263,-0.035862,0.99299,-71.782
    4137 
    4138 > fitmap #2 inMap #6
    4139 
    4140 Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    4141 using 4172 atoms 
    4142 average map value = 0.009063, steps = 312 
    4143 shifted from previous position = 4.49 
    4144 rotated from previous position = 15 degrees 
    4145 atoms outside contour = 3460, contour level = 0.023968 
    4146  
    4147 Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
    4148 (#6) coordinates: 
    4149 Matrix rotation and translation 
    4150 0.96577903 -0.24761346 0.07719089 26.69901778 
    4151 0.24725112 0.96884490 0.01436825 -39.50002954 
    4152 -0.07834378 0.00520898 0.99691279 -48.21369818 
    4153 Axis -0.01765433 0.29979005 0.95384184 
    4154 Axis point 100.38161483 89.79556593 0.00000000 
    4155 Rotation angle (degrees) 15.03481890 
    4156 Shift along axis -58.30131153 
    4157  
    4158 
    4159 > show #7 models
    4160 
    4161 > view matrix models
    4162 > #2,0.96578,-0.24761,0.077191,27.525,0.24725,0.96884,0.014368,-39.645,-0.078344,0.005209,0.99691,-38.024
    4163 
    4164 > fitmap #2 inMap #6
    4165 
    4166 Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    4167 using 4172 atoms 
    4168 average map value = 0.0152, steps = 100 
    4169 shifted from previous position = 2.57 
    4170 rotated from previous position = 15 degrees 
    4171 atoms outside contour = 2886, contour level = 0.023968 
    4172  
    4173 Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
    4174 (#6) coordinates: 
    4175 Matrix rotation and translation 
    4176 0.99999820 -0.00152133 -0.00113441 0.65619506 
    4177 0.00152282 0.99999798 0.00131226 -0.68028884 
    4178 0.00113241 -0.00131398 0.99999850 -50.13684871 
    4179 Axis -0.56900919 -0.49113669 0.65955538 
    4180 Axis point 11108.53034817 -11964.60385654 0.00000000 
    4181 Rotation angle (degrees) 0.13222354 
    4182 Shift along axis -33.10729433 
    4183  
    4184 
    4185 > hide #7 models
    4186 
    4187 > fitmap #2 inMap #6
    4188 
    4189 Fit molecule combination (#2) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    4190 using 4172 atoms 
    4191 average map value = 0.0152, steps = 40 
    4192 shifted from previous position = 0.00531 
    4193 rotated from previous position = 0.0479 degrees 
    4194 atoms outside contour = 2886, contour level = 0.023968 
    4195  
    4196 Position of combination (#2) relative to Rhom_Flagella_Map_2RingMasked.mrc
    4197 (#6) coordinates: 
    4198 Matrix rotation and translation 
    4199 0.99999847 -0.00080115 -0.00155626 0.63364300 
    4200 0.00080328 0.99999874 0.00136722 -0.57702850 
    4201 0.00155517 -0.00136846 0.99999785 -50.19197229 
    4202 Axis -0.61574506 -0.70031926 0.36112457 
    4203 Axis point 28059.27797088 0.00000000 -6786.42896826 
    4204 Rotation angle (degrees) 0.12727911 
    4205 Shift along axis -18.11161271 
    4206  
    4207 
    4208 > show #7 models
    4209 
    4210 > hide #7 models
    4211 
    4212 > select clear
    4213 
    4214 > select add #5
    4215 
    4216 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    4217 
    4218 > hide sel cartoons
    4219 
    4220 > show sel atoms
    4221 
    4222 > show sel cartoons
    4223 
    4224 > hide sel atoms
    4225 
    4226 > select clear
    4227 
    4228 > combine #5 #8
    4229 
    4230 > color #8 #cffda2ff
    4231 
    4232 > color #8 #c0fd97ff
    4233 
    4234 > select add #8
    4235 
    4236 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    4237 
    4238 > show #7 models
    4239 
    4240 > view matrix models
    4241 > #8,0.99999,0.0038947,-0.00039177,-12.077,-0.003894,0.99999,0.0018855,29.944,0.00039911,-0.001884,1,-31.356
    4242 
    4243 > hide #7 models
    4244 
    4245 > show #7 models
    4246 
    4247 > hide #7 models
    4248 
    4249 > show #7 models
    4250 
    4251 > view matrix models
    4252 > #8,0.99999,0.0038947,-0.00039177,9.9494,-0.003894,0.99999,0.0018855,-3.8414,0.00039911,-0.001884,1,-44.408
    4253 
    4254 > fitmap #8 inMap #6
    4255 
    4256 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4257 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4258 average map value = 0.005737, steps = 308 
    4259 shifted from previous position = 2.87 
    4260 rotated from previous position = 8.09 degrees 
    4261 atoms outside contour = 1873, contour level = 0.023968 
    4262  
    4263 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4264 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4265 Matrix rotation and translation 
    4266 0.98963206 0.11446546 -0.08675275 15.17760892 
    4267 -0.11531570 0.99331712 -0.00483698 14.95758481 
    4268 0.08561933 0.01479078 0.99621813 -57.67284258 
    4269 Axis 0.06817136 -0.59868466 -0.79807853 
    4270 Axis point 332.17674449 -79.81270352 0.00000000 
    4271 Rotation angle (degrees) 8.27700137 
    4272 Shift along axis 38.10725913 
    4273  
    4274 
    4275 > hide #7 models
    4276 
    4277 > show #7 models
    4278 
    4279 > view matrix models
    4280 > #8,0.98963,0.11447,-0.086753,22.343,-0.11532,0.99332,-0.004837,9.8638,0.085619,0.014791,0.99622,-59.886
    4281 
    4282 > fitmap #8 inMap #6
    4283 
    4284 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4285 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4286 average map value = 0.005611, steps = 208 
    4287 shifted from previous position = 4.45 
    4288 rotated from previous position = 8.39 degrees 
    4289 atoms outside contour = 1903, contour level = 0.023968 
    4290  
    4291 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4292 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4293 Matrix rotation and translation 
    4294 0.99846740 -0.02179189 -0.05087212 35.00891322 
    4295 0.01911164 0.99843325 -0.05259070 1.94902238 
    4296 0.05193847 0.05153785 0.99731953 -58.66071553 
    4297 Axis 0.68532516 -0.67665101 0.26920779 
    4298 Axis point 0.00000000 1178.85944083 90.48366950 
    4299 Rotation angle (degrees) 4.35696824 
    4300 Shift along axis 6.88175951 
    4301  
    4302 
    4303 > view matrix models
    4304 > #8,0.99847,-0.021792,-0.050872,31.659,0.019112,0.99843,-0.052591,2.8545,0.051938,0.051538,0.99732,-58.052
    4305 
    4306 > fitmap #8 inMap #6
    4307 
    4308 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4309 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4310 average map value = 0.00543, steps = 112 
    4311 shifted from previous position = 1.6 
    4312 rotated from previous position = 3.6 degrees 
    4313 atoms outside contour = 1905, contour level = 0.023968 
    4314  
    4315 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4316 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4317 Matrix rotation and translation 
    4318 0.99816956 0.03820358 -0.04688290 21.88702379 
    4319 -0.03969872 0.99871868 -0.03138501 8.02225321 
    4320 0.04562380 0.03318875 0.99840722 -53.00833141 
    4321 Axis 0.47100232 -0.67474573 -0.56822092 
    4322 Axis point 728.77043456 0.00000000 86.60510381 
    4323 Rotation angle (degrees) 3.93066831 
    4324 Shift along axis 35.01630052 
    4325  
    4326 
    4327 > view matrix models
    4328 > #8,0.99817,0.038204,-0.046883,26.782,-0.039699,0.99872,-0.031385,10.027,0.045624,0.033189,0.99841,-53.619
    4329 
    4330 > fitmap #8 inMap #6
    4331 
    4332 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4333 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4334 average map value = 0.005937, steps = 224 
    4335 shifted from previous position = 4.48 
    4336 rotated from previous position = 7.86 degrees 
    4337 atoms outside contour = 1887, contour level = 0.023968 
    4338  
    4339 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4340 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4341 Matrix rotation and translation 
    4342 0.98063057 0.12782658 -0.14840504 36.74861252 
    4343 -0.13437789 0.99031365 -0.03494935 23.99128554 
    4344 0.14250008 0.05421475 0.98830890 -66.57035658 
    4345 Axis 0.22199143 -0.72426510 -0.65280922 
    4346 Axis point 322.96021236 0.00000000 154.25463707 
    4347 Rotation angle (degrees) 11.58537024 
    4348 Shift along axis 34.23956869 
    4349  
    4350 
    4351 > view matrix models
    4352 > #8,0.98063,0.12783,-0.14841,31.117,-0.13438,0.99031,-0.034949,27.163,0.1425,0.054215,0.98831,-66.508
    4353 
    4354 > fitmap #8 inMap #6
    4355 
    4356 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4357 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4358 average map value = 0.006034, steps = 968 
    4359 shifted from previous position = 2.53 
    4360 rotated from previous position = 40.9 degrees 
    4361 atoms outside contour = 1879, contour level = 0.023968 
    4362  
    4363 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4364 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4365 Matrix rotation and translation 
    4366 0.63603298 0.71300671 -0.29509910 26.48908049 
    4367 -0.73535420 0.67595937 0.04830254 150.97610156 
    4368 0.23391503 0.18628035 0.95424493 -94.14169106 
    4369 Axis 0.08912665 -0.34171622 -0.93556746 
    4370 Axis point 193.96300777 66.71641718 0.00000000 
    4371 Rotation angle (degrees) 50.71941320 
    4372 Shift along axis 38.84580360 
    4373  
    4374 
    4375 > undo
    4376 
    4377 > ui mousemode right "rotate selected models"
    4378 
    4379 > view matrix models
    4380 > #8,0.88345,0.13504,-0.44865,116.76,-0.11658,0.9908,0.068663,-1.5733,0.45379,-0.0083564,0.89107,-85.226
    4381 
    4382 > view matrix models
    4383 > #8,0.9459,0.11504,-0.30338,78.097,-0.11819,0.99296,0.0080419,11.617,0.30216,0.028249,0.95284,-80.218
    4384 
    4385 > fitmap #8 inMap #6
    4386 
    4387 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4388 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4389 average map value = 0.005884, steps = 356 
    4390 shifted from previous position = 3.12 
    4391 rotated from previous position = 18.7 degrees 
    4392 atoms outside contour = 1876, contour level = 0.023968 
    4393  
    4394 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4395 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4396 Matrix rotation and translation 
    4397 0.96996060 -0.17682189 -0.16706423 88.29882519 
    4398 0.17488603 0.98423606 -0.02634866 -25.27257095 
    4399 0.16908966 -0.00366003 0.98559388 -64.35991020 
    4400 Axis 0.04658427 -0.69019085 0.72212637 
    4401 Axis point 284.10826429 457.66536103 0.00000000 
    4402 Rotation angle (degrees) 14.09452979 
    4403 Shift along axis -24.91975433 
    4404  
    4405 
    4406 > view matrix models
    4407 > #8,0.98932,-0.14562,0.0057109,42.705,0.14565,0.98667,-0.072598,-10.884,0.0049372,0.072655,0.99734,-52.437
    4408 
    4409 > fitmap #8 inMap #6
    4410 
    4411 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4412 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4413 average map value = 0.005998, steps = 92 
    4414 shifted from previous position = 4.12 
    4415 rotated from previous position = 3.41 degrees 
    4416 atoms outside contour = 1871, contour level = 0.023968 
    4417  
    4418 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4419 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4420 Matrix rotation and translation 
    4421 0.98261996 -0.18420967 -0.02290877 58.62106601 
    4422 0.18325365 0.98231071 -0.03851965 -26.00503180 
    4423 0.02959923 0.03365206 0.99899521 -51.39348826 
    4424 Axis 0.19085625 -0.13885606 0.97174734 
    4425 Axis point 200.93861451 335.68205252 0.00000000 
    4426 Rotation angle (degrees) 10.89871883 
    4427 Shift along axis -35.14233193 
    4428  
    4429 
    4430 > ui mousemode right "translate selected models"
    4431 
    4432 > view matrix models
    4433 > #8,0.98262,-0.18421,-0.022909,52.632,0.18325,0.98231,-0.03852,-20.177,0.029599,0.033652,0.999,-53.424
    4434 
    4435 > fitmap #8 inMap #6
    4436 
    4437 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4438 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4439 average map value = 0.006147, steps = 180 
    4440 shifted from previous position = 6.8 
    4441 rotated from previous position = 7.69 degrees 
    4442 atoms outside contour = 1876, contour level = 0.023968 
    4443  
    4444 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4445 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4446 Matrix rotation and translation 
    4447 0.94983071 -0.31270857 -0.00591292 77.96164300 
    4448 0.31201435 0.94869190 -0.05129062 -37.40060957 
    4449 0.02164856 0.04687249 0.99866627 -55.90463177 
    4450 Axis 0.15507883 -0.04354185 0.98694208 
    4451 Axis point 165.66074489 243.29202126 0.00000000 
    4452 Rotation angle (degrees) 18.45104196 
    4453 Shift along axis -41.45594120 
    4454  
    4455 
    4456 > view matrix models
    4457 > #8,0.94983,-0.31271,-0.0059129,72.56,0.31201,0.94869,-0.051291,-35.194,0.021649,0.046872,0.99867,-56.216
    4458 
    4459 > view matrix models
    4460 > #8,0.94983,-0.31271,-0.0059129,78.24,0.31201,0.94869,-0.051291,-31.624,0.021649,0.046872,0.99867,-54.846
    4461 
    4462 > view matrix models
    4463 > #8,0.94983,-0.31271,-0.0059129,73.824,0.31201,0.94869,-0.051291,-29.812,0.021649,0.046872,0.99867,-55.144
    4464 
    4465 > fitmap #8 inMap #6
    4466 
    4467 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4468 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4469 average map value = 0.006151, steps = 508 
    4470 shifted from previous position = 8.68 
    4471 rotated from previous position = 0.114 degrees 
    4472 atoms outside contour = 1876, contour level = 0.023968 
    4473  
    4474 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4475 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4476 Matrix rotation and translation 
    4477 0.94924338 -0.31449804 -0.00529053 78.19091124 
    4478 0.31383220 0.94809547 -0.05122832 -37.61869496 
    4479 0.02112713 0.04696780 0.99867296 -55.84231169 
    4480 Axis 0.15427379 -0.04150422 0.98715601 
    4481 Axis point 165.42800099 242.28084795 0.00000000 
    4482 Rotation angle (degrees) 18.55729158 
    4483 Shift along axis -41.50093117 
    4484  
    4485 
    4486 > view matrix models
    4487 > #8,0.94924,-0.3145,-0.0052905,71.118,0.31383,0.9481,-0.051228,-27.042,0.021127,0.046968,0.99867,-58.296
    4488 
    4489 > ui mousemode right "rotate selected models"
    4490 
    4491 > view matrix models
    4492 > #8,0.93557,-0.35,0.047021,67.222,0.35272,0.91957,-0.17318,-2.2147,0.017373,0.1786,0.98377,-74.378
    4493 
    4494 > view matrix models
    4495 > #8,0.93822,-0.34172,0.054455,63.92,0.34601,0.92804,-0.13788,-10.156,-0.0034208,0.1482,0.98895,-67.607
    4496 
    4497 > view matrix models
    4498 > #8,0.94659,-0.32045,0.035706,63.473,0.32215,0.9446,-0.062885,-25.282,-0.013576,0.071029,0.99738,-56.15
    4499 
    4500 > ui mousemode right "translate selected models"
    4501 
    4502 > view matrix models
    4503 > #8,0.94659,-0.32045,0.035706,74.864,0.32215,0.9446,-0.062885,-53.903,-0.013576,0.071029,0.99738,-76.869
    4504 
    4505 > view matrix models
    4506 > #8,0.94659,-0.32045,0.035706,73.638,0.32215,0.9446,-0.062885,-39.188,-0.013576,0.071029,0.99738,-78.638
    4507 
    4508 > fitmap #8 inMap #6
    4509 
    4510 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4511 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4512 average map value = 0.01505, steps = 136 
    4513 shifted from previous position = 5.52 
    4514 rotated from previous position = 14.7 degrees 
    4515 atoms outside contour = 1432, contour level = 0.023968 
    4516  
    4517 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4518 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4519 Matrix rotation and translation 
    4520 0.83991382 -0.54271552 -0.00215344 127.51939843 
    4521 0.54271809 0.83991451 0.00083064 -69.25907527 
    4522 0.00135791 -0.00186637 0.99999734 -73.58400882 
    4523 Axis -0.00248471 -0.00323494 0.99999168 
    4524 Axis point 181.47298292 181.09859578 0.00000000 
    4525 Rotation angle (degrees) 32.86908378 
    4526 Shift along axis -73.67619611 
    4527  
    4528 
    4529 > select #6
    4530 
    4531 2 models selected 
    4532 
    4533 > select clear
    4534 
    4535 > select add #8
    4536 
    4537 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    4538 
    4539 > view matrix models
    4540 > #8,0.83991,-0.54272,-0.0021534,128.12,0.54272,0.83991,0.00083064,-69.119,0.0013579,-0.0018664,1,-73.748
    4541 
    4542 > fitmap #8 inMap #6
    4543 
    4544 Fit molecule copy of Rhom_Model_Trimmed.pdb (#8) to map
    4545 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4546 average map value = 0.01505, steps = 64 
    4547 shifted from previous position = 0.637 
    4548 rotated from previous position = 0.0807 degrees 
    4549 atoms outside contour = 1435, contour level = 0.023968 
    4550  
    4551 Position of copy of Rhom_Model_Trimmed.pdb (#8) relative to
    4552 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4553 Matrix rotation and translation 
    4554 0.83920527 -0.54381219 -0.00167905 127.69056905 
    4555 0.54381415 0.83920500 0.00106297 -69.37714652 
    4556 0.00083101 -0.00180514 0.99999803 -73.51432376 
    4557 Axis -0.00263702 -0.00230781 0.99999386 
    4558 Axis point 181.35447735 180.82603109 0.00000000 
    4559 Rotation angle (degrees) 32.94382522 
    4560 Shift along axis -73.69048583 
    4561  
    4562 
    4563 > hide #7 models
    4564 
    4565 > show sel atoms
    4566 
    4567 > hide sel cartoons
    4568 
    4569 > show sel cartoons
    4570 
    4571 > hide sel atoms
    4572 
    4573 > show #7 models
    4574 
    4575 > hide #7 models
    4576 
    4577 > select up
    4578 
    4579 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    4580 
    4581 > combine #8 #9
    4582 
    4583 > hide #!9 models
    4584 
    4585 > show #!9 models
    4586 
    4587 > color #9 #5bfa40ff
    4588 
    4589 > select subtract #8
    4590 
    4591 Nothing selected 
    4592 
    4593 > select add #9
    4594 
    4595 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    4596 
    4597 > view matrix models
    4598 > #9,0.83921,-0.54381,-0.001679,139.41,0.54381,0.83921,0.001063,-63.16,0.00083101,-0.0018051,1,-80.57
    4599 
    4600 > view matrix models
    4601 > #9,0.83921,-0.54381,-0.001679,148.35,0.54381,0.83921,0.001063,-61.461,0.00083101,-0.0018051,1,-83.804
    4602 
    4603 > fitmap #9 inMap #6
    4604 
    4605 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
    4606 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4607 average map value = 0.005288, steps = 88 
    4608 shifted from previous position = 1.85 
    4609 rotated from previous position = 1.55 degrees 
    4610 atoms outside contour = 1912, contour level = 0.023968 
    4611  
    4612 Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
    4613 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4614 Matrix rotation and translation 
    4615 0.83475177 -0.55048780 0.01235566 146.94976734 
    4616 0.55015099 0.83475327 0.02282238 -67.14261997 
    4617 -0.02287737 -0.01225354 0.99966318 -76.77566675 
    4618 Axis -0.03183623 0.03197882 0.99898139 
    4619 Axis point 179.71517421 208.16645980 0.00000000 
    4620 Rotation angle (degrees) 33.42744212 
    4621 Shift along axis -83.52293049 
    4622  
    4623 
    4624 > view matrix models
    4625 > #9,0.83475,-0.55049,0.012356,136.5,0.55015,0.83475,0.022822,-62.481,-0.022877,-0.012254,0.99966,-74.502
    4626 
    4627 > fitmap #9 inMap #6
    4628 
    4629 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
    4630 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4631 average map value = 0.004715, steps = 164 
    4632 shifted from previous position = 4.94 
    4633 rotated from previous position = 5.16 degrees 
    4634 atoms outside contour = 1912, contour level = 0.023968 
    4635  
    4636 Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
    4637 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4638 Matrix rotation and translation 
    4639 0.87917584 -0.47533556 0.03325578 113.79195005 
    4640 0.47457597 0.87975677 0.02838445 -63.35722617 
    4641 -0.04274914 -0.00917253 0.99904373 -70.91945081 
    4642 Axis -0.03938081 0.07969586 0.99604102 
    4643 Axis point 168.18062589 190.00164554 0.00000000 
    4644 Rotation angle (degrees) 28.47945328 
    4645 Shift along axis -80.16921029 
    4646  
    4647 
    4648 > lighting simple
    4649 
    4650 > ui mousemode right "rotate selected models"
    4651 
    4652 > view matrix models
    4653 > #9,0.88806,-0.44961,-0.095911,136.74,0.44494,0.89307,-0.066733,-39.863,0.11566,0.016589,0.99315,-98.673
    4654 
    4655 > fitmap #9 inMap #6
    4656 
    4657 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
    4658 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4659 average map value = 0.007383, steps = 112 
    4660 shifted from previous position = 5.9 
    4661 rotated from previous position = 5.1 degrees 
    4662 atoms outside contour = 1792, contour level = 0.023968 
    4663  
    4664 Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
    4665 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4666 Matrix rotation and translation 
    4667 0.87120678 -0.46809174 -0.14794891 157.88155797 
    4668 0.45089261 0.88216452 -0.13594712 -27.15727185 
    4669 0.19415100 0.05172899 0.97960681 -111.06379944 
    4670 Axis 0.18797835 -0.34265084 0.92046431 
    4671 Axis point 189.45442144 310.55895871 0.00000000 
    4672 Rotation angle (degrees) 29.94682710 
    4673 Shift along axis -63.24648643 
    4674  
    4675 
    4676 > ui mousemode right "translate selected models"
    4677 
    4678 > view matrix models
    4679 > #9,0.87121,-0.46809,-0.14795,166.46,0.45089,0.88216,-0.13595,-24.754,0.19415,0.051729,0.97961,-131.73
    4680 
    4681 > fitmap #9 inMap #6
    4682 
    4683 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
    4684 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4685 average map value = 0.01453, steps = 268 
    4686 shifted from previous position = 3.86 
    4687 rotated from previous position = 39.4 degrees 
    4688 atoms outside contour = 1497, contour level = 0.023968 
    4689  
    4690 Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
    4691 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4692 Matrix rotation and translation 
    4693 0.41519119 -0.90972955 -0.00290285 270.73580245 
    4694 0.90973054 0.41519644 -0.00150511 -58.18075864 
    4695 0.00257449 -0.00201591 0.99999465 -97.24496960 
    4696 Axis -0.00028074 -0.00301041 0.99999543 
    4697 Axis point 180.83519548 181.32258560 0.00000000 
    4698 Rotation angle (degrees) 65.46864582 
    4699 Shift along axis -97.14538396 
    4700  
    4701 
    4702 > show #7 models
    4703 
    4704 > hide #7 models
    4705 
    4706 > fitmap #9 inMap #6
    4707 
    4708 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
    4709 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4710 average map value = 0.01453, steps = 28 
    4711 shifted from previous position = 0.0132 
    4712 rotated from previous position = 0.092 degrees 
    4713 atoms outside contour = 1496, contour level = 0.023968 
    4714  
    4715 Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
    4716 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4717 Matrix rotation and translation 
    4718 0.41382336 -0.91035366 -0.00253856 270.96031019 
    4719 0.91035493 0.41382695 -0.00108093 -58.16023370 
    4720 0.00203455 -0.00186367 0.99999619 -97.17246003 
    4721 Axis -0.00042991 -0.00251171 0.99999675 
    4722 Axis point 180.81153069 181.17250427 0.00000000 
    4723 Rotation angle (degrees) 65.55476719 
    4724 Shift along axis -97.14255103 
    4725  
    4726 
    4727 > fitmap #9 inMap #6
    4728 
    4729 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#9) to map
    4730 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4731 average map value = 0.01453, steps = 40 
    4732 shifted from previous position = 0.0117 
    4733 rotated from previous position = 0.0376 degrees 
    4734 atoms outside contour = 1497, contour level = 0.023968 
    4735  
    4736 Position of copy of copy of Rhom_Model_Trimmed.pdb (#9) relative to
    4737 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4738 Matrix rotation and translation 
    4739 0.41438751 -0.91009669 -0.00264725 270.86057188 
    4740 0.91009777 0.41439168 -0.00126353 -58.15792502 
    4741 0.00224693 -0.00188567 0.99999570 -97.21016985 
    4742 Axis -0.00034180 -0.00268881 0.99999633 
    4743 Axis point 180.80843136 181.23754816 0.00000000 
    4744 Rotation angle (degrees) 65.51925316 
    4745 Shift along axis -97.14601644 
    4746  
    4747 
    4748 > combine #8 #10
    4749 
    4750 > select subtract #9
    4751 
    4752 Nothing selected 
    4753 
    4754 > select add #10
    4755 
    4756 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    4757 
    4758 > color #10 #fafa28ff
    4759 
    4760 > view matrix models
    4761 > #10,0.83921,-0.54381,-0.001679,132.3,0.54381,0.83921,0.001063,-62.185,0.00083101,-0.0018051,1,-52.519
    4762 
    4763 > select add #9
    4764 
    4765 4172 atoms, 4196 bonds, 2 pseudobonds, 546 residues, 4 models selected 
    4766 
    4767 > select subtract #9
    4768 
    4769 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    4770 
    4771 > view matrix models
    4772 > #10,0.83921,-0.54381,-0.001679,131.5,0.54381,0.83921,0.001063,-53.122,0.00083101,-0.0018051,1,-36.385
    4773 
    4774 > view matrix models
    4775 > #10,0.83921,-0.54381,-0.001679,136.6,0.54381,0.83921,0.001063,-70.459,0.00083101,-0.0018051,1,-39.272
    4776 
    4777 > view matrix models
    4778 > #10,0.83921,-0.54381,-0.001679,140.24,0.54381,0.83921,0.001063,-71.001,0.00083101,-0.0018051,1,-46.138
    4779 
    4780 > fitmap #10 inMap #6
    4781 
    4782 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    4783 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4784 average map value = 0.006078, steps = 88 
    4785 shifted from previous position = 3.54 
    4786 rotated from previous position = 4.37 degrees 
    4787 atoms outside contour = 1875, contour level = 0.023968 
    4788  
    4789 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    4790 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4791 Matrix rotation and translation 
    4792 0.81758317 -0.57443401 0.03979113 140.06271469 
    4793 0.57579818 0.81606371 -0.04996486 -58.42685075 
    4794 -0.00377058 0.06376209 0.99795801 -55.55133212 
    4795 Axis 0.09832346 0.03766159 0.99444160 
    4796 Axis point 162.41612831 199.72567200 0.00000000 
    4797 Rotation angle (degrees) 35.33321724 
    4798 Shift along axis -43.67155309 
    4799  
    4800 
    4801 > view matrix models
    4802 > #10,0.81758,-0.57443,0.039791,147.43,0.5758,0.81606,-0.049965,-51.14,-0.0037706,0.063762,0.99796,-33.501
    4803 
    4804 > view matrix models
    4805 > #10,0.81758,-0.57443,0.039791,154.25,0.5758,0.81606,-0.049965,-46.873,-0.0037706,0.063762,0.99796,-28.668
    4806 
    4807 > fitmap #10 inMap #6
    4808 
    4809 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    4810 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4811 average map value = 0.004379, steps = 76 
    4812 shifted from previous position = 4.44 
    4813 rotated from previous position = 3.47 degrees 
    4814 atoms outside contour = 1924, contour level = 0.023968 
    4815  
    4816 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    4817 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4818 Matrix rotation and translation 
    4819 0.79300423 -0.60896300 0.01756025 170.27324607 
    4820 0.60800276 0.78927765 -0.08586868 -37.20806647 
    4821 0.03843094 0.07877091 0.99615170 -39.21759625 
    4822 Axis 0.13404628 -0.01699250 0.99082937 
    4823 Axis point 142.87853389 234.43537117 0.00000000 
    4824 Rotation angle (degrees) 37.88762059 
    4825 Shift along axis -15.40119225 
    4826  
    4827 
    4828 > view matrix models
    4829 > #10,0.793,-0.60896,0.01756,162.96,0.608,0.78928,-0.085869,-42.072,0.038431,0.078771,0.99615,-35.416
    4830 
    4831 > fitmap #10 inMap #6
    4832 
    4833 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    4834 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4835 average map value = 0.005142, steps = 680 
    4836 shifted from previous position = 4.78 
    4837 rotated from previous position = 28.7 degrees 
    4838 atoms outside contour = 1913, contour level = 0.023968 
    4839  
    4840 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    4841 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4842 Matrix rotation and translation 
    4843 0.98395740 -0.16400650 -0.07021181 80.67898504 
    4844 0.16348441 0.98645816 -0.01315812 -18.22021479 
    4845 0.07141904 0.00146849 0.99744532 -27.92955062 
    4846 Axis 0.04095894 -0.39660911 0.91707338 
    4847 Axis point 187.57892673 477.34387190 0.00000000 
    4848 Rotation angle (degrees) 10.28544027 
    4849 Shift along axis -15.08261850 
    4850  
    4851 
    4852 > view matrix models
    4853 > #10,0.98396,-0.16401,-0.070212,87.581,0.16348,0.98646,-0.013158,-22.269,0.071419,0.0014685,0.99745,-26.056
    4854 
    4855 > ui mousemode right "rotate selected models"
    4856 
    4857 > view matrix models
    4858 > #10,0.83836,-0.3671,-0.40297,214.24,0.41018,0.91172,0.0228,-57.967,0.35903,-0.18441,0.91493,-25.497
    4859 
    4860 > view matrix models
    4861 > #10,0.50322,-0.4782,-0.71979,353.57,0.65321,0.75581,-0.045466,-57.989,0.56577,-0.44729,0.6927,30.123
    4862 
    4863 > view matrix models
    4864 > #10,0.058529,-0.99818,-0.014462,348.61,0.9852,0.055417,0.16223,-50.027,-0.16114,-0.023743,0.98665,17.033
    4865 
    4866 > ui mousemode right "translate selected models"
    4867 
    4868 > view matrix models
    4869 > #10,0.058529,-0.99818,-0.014462,358.99,0.9852,0.055417,0.16223,-49.778,-0.16114,-0.023743,0.98665,21.528
    4870 
    4871 > fitmap #10 inMap #6
    4872 
    4873 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    4874 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4875 average map value = 0.009554, steps = 284 
    4876 shifted from previous position = 14.4 
    4877 rotated from previous position = 12.5 degrees 
    4878 atoms outside contour = 1679, contour level = 0.023968 
    4879  
    4880 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    4881 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4882 Matrix rotation and translation 
    4883 -0.04353449 -0.99905163 0.00076825 369.53457796 
    4884 0.99859538 -0.04353783 -0.03019463 17.41611147 
    4885 0.03019945 -0.00054733 0.99954374 -16.78940499 
    4886 Axis 0.01483787 -0.01472971 0.99978141 
    4887 Axis point 176.63661537 185.55566700 0.00000000 
    4888 Rotation angle (degrees) 92.50830994 
    4889 Shift along axis -11.55916447 
    4890  
    4891 
    4892 > ui mousemode right "rotate selected models"
    4893 
    4894 > view matrix models
    4895 > #10,-0.042719,-0.98269,0.18026,327.66,0.99463,-0.024801,0.10051,-13.384,-0.094299,0.18359,0.97847,-20.311
    4896 
    4897 > view matrix models
    4898 > #10,-0.067365,-0.96497,0.25358,312.85,0.99304,-0.040225,0.11073,-13.032,-0.096654,0.25927,0.96096,-27.569
    4899 
    4900 > ui mousemode right "translate selected models"
    4901 
    4902 > view matrix models
    4903 > #10,-0.067365,-0.96497,0.25358,303.45,0.99304,-0.040225,0.11073,-23.665,-0.096654,0.25927,0.96096,-30.727
    4904 
    4905 > view matrix models
    4906 > #10,-0.067365,-0.96497,0.25358,299.72,0.99304,-0.040225,0.11073,-20.331,-0.096654,0.25927,0.96096,-29.658
    4907 
    4908 > fitmap #10 inMap #6
    4909 
    4910 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    4911 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4912 average map value = 0.003177, steps = 80 
    4913 shifted from previous position = 1.37 
    4914 rotated from previous position = 1.92 degrees 
    4915 atoms outside contour = 1981, contour level = 0.023968 
    4916  
    4917 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    4918 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4919 Matrix rotation and translation 
    4920 -0.05506788 -0.95917417 0.27740303 292.20904763 
    4921 0.99191345 -0.02073523 0.12521086 -24.79923794 
    4922 -0.11434701 0.28205489 0.95255961 -28.24239658 
    4923 Axis 0.07857133 0.19624797 0.97740129 
    4924 Axis point 158.26915705 131.33348962 0.00000000 
    4925 Rotation angle (degrees) 93.53290452 
    4926 Shift along axis -9.51170130 
    4927  
    4928 
    4929 > view matrix models
    4930 > #10,-0.055068,-0.95917,0.2774,290.98,0.99191,-0.020735,0.12521,-25.425,-0.11435,0.28205,0.95256,-32.576
    4931 
    4932 > fitmap #10 inMap #6
    4933 
    4934 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    4935 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4936 average map value = 0.003789, steps = 188 
    4937 shifted from previous position = 2.12 
    4938 rotated from previous position = 8.94 degrees 
    4939 atoms outside contour = 1947, contour level = 0.023968 
    4940  
    4941 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    4942 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4943 Matrix rotation and translation 
    4944 0.09920450 -0.95570510 0.27710327 264.32602734 
    4945 0.99079345 0.12065260 0.06141081 -33.13732338 
    4946 -0.09212385 0.26845987 0.95887564 -36.18706616 
    4947 Axis 0.10394042 0.18535520 0.97715907 
    4948 Axis point 151.17782173 135.61072101 0.00000000 
    4949 Rotation angle (degrees) 84.87284404 
    4950 Shift along axis -14.02853762 
    4951  
    4952 
    4953 > ui mousemode right "rotate selected models"
    4954 
    4955 > view matrix models
    4956 > #10,0.19139,-0.94059,0.28047,246.67,0.97292,0.21954,0.07232,-47.665,-0.1296,0.25904,0.95713,-28.431
    4957 
    4958 > view matrix models
    4959 > #10,-0.24481,-0.94236,0.22808,327.63,0.96792,-0.22384,0.1141,11.144,-0.056474,0.2487,0.96693,-40.615
    4960 
    4961 > ui mousemode right "translate selected models"
    4962 
    4963 > view matrix models
    4964 > #10,-0.24481,-0.94236,0.22808,332.18,0.96792,-0.22384,0.1141,11.989,-0.056474,0.2487,0.96693,-38.32
    4965 
    4966 > fitmap #10 inMap #6
    4967 
    4968 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    4969 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    4970 average map value = 0.004351, steps = 184 
    4971 shifted from previous position = 3.24 
    4972 rotated from previous position = 17.2 degrees 
    4973 atoms outside contour = 1926, contour level = 0.023968 
    4974  
    4975 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    4976 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    4977 Matrix rotation and translation 
    4978 -0.51246118 -0.82285765 0.24553784 351.09547743 
    4979 0.85473101 -0.46129345 0.23799842 40.22674115 
    4980 -0.08257382 0.33183376 0.93971694 -43.42572147 
    4981 Axis 0.05481202 0.19165983 0.97992967 
    4982 Axis point 164.32008129 125.68735784 0.00000000 
    4983 Rotation angle (degrees) 121.13249336 
    4984 Shift along axis -15.60004851 
    4985  
    4986 
    4987 > ui mousemode right "rotate selected models"
    4988 
    4989 > view matrix models
    4990 > #10,-0.067627,-0.98334,0.16874,321.6,0.98639,-0.040493,0.15935,-27.202,-0.14986,0.17722,0.97269,-16.542
    4991 
    4992 > view matrix models
    4993 > #10,-0.015887,-0.9929,0.11788,325.97,0.99883,-0.010366,0.047302,-9.2275,-0.045745,0.11849,0.9919,-28.372
    4994 
    4995 > ui mousemode right "translate selected models"
    4996 
    4997 > view matrix models
    4998 > #10,-0.015887,-0.9929,0.11788,332.73,0.99883,-0.010366,0.047302,-7.0295,-0.045745,0.11849,0.9919,-26.67
    4999 
    5000 > view matrix models
    5001 > #10,-0.015887,-0.9929,0.11788,334.23,0.99883,-0.010366,0.047302,-6.4833,-0.045745,0.11849,0.9919,-26.704
    5002 
    5003 > fitmap #10 inMap #6
    5004 
    5005 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    5006 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5007 average map value = 0.005972, steps = 132 
    5008 shifted from previous position = 1.88 
    5009 rotated from previous position = 2.62 degrees 
    5010 atoms outside contour = 1865, contour level = 0.023968 
    5011  
    5012 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    5013 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5014 Matrix rotation and translation 
    5015 -0.05607084 -0.99376862 0.09633267 346.25612771 
    5016 0.99744802 -0.05148335 0.04946622 -2.06034848 
    5017 -0.04419845 0.09886045 0.99411926 -25.01312768 
    5018 Axis 0.02473693 0.07037885 0.99721357 
    5019 Axis point 173.86345350 164.07514952 0.00000000 
    5020 Rotation angle (degrees) 93.25141611 
    5021 Shift along axis -16.52312014 
    5022  
    5023 
    5024 > view matrix models
    5025 > #10,-0.056071,-0.99377,0.096333,346.71,0.99745,-0.051483,0.049466,-1.6769,-0.044198,0.09886,0.99412,-22.979
    5026 
    5027 > view matrix models
    5028 > #10,-0.056071,-0.99377,0.096333,345.87,0.99745,-0.051483,0.049466,-1.9353,-0.044198,0.09886,0.99412,-24.018
    5029 
    5030 > fitmap #10 inMap #6
    5031 
    5032 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    5033 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5034 average map value = 0.00598, steps = 184 
    5035 shifted from previous position = 1.21 
    5036 rotated from previous position = 1.32 degrees 
    5037 atoms outside contour = 1870, contour level = 0.023968 
    5038  
    5039 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    5040 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5041 Matrix rotation and translation 
    5042 -0.07796529 -0.99276623 0.09130511 351.01050036 
    5043 0.99574829 -0.07303687 0.05613342 0.12818678 
    5044 -0.04905872 0.09529337 0.99423962 -23.66654831 
    5045 Axis 0.01964040 0.07039850 0.99732558 
    5046 Axis point 175.13398292 163.73456346 0.00000000 
    5047 Rotation angle (degrees) 94.49552704 
    5048 Shift along axis -16.70024324 
    5049  
    5050 
    5051 > fitmap #10 inMap #6
    5052 
    5053 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    5054 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5055 average map value = 0.005979, steps = 64 
    5056 shifted from previous position = 0.0586 
    5057 rotated from previous position = 0.451 degrees 
    5058 atoms outside contour = 1868, contour level = 0.023968 
    5059  
    5060 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    5061 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5062 Matrix rotation and translation 
    5063 -0.08562026 -0.99217235 0.09090216 352.26327543 
    5064 0.99503416 -0.08050451 0.05853248 0.86741850 
    5065 -0.05075627 0.09546231 0.99413819 -23.38604066 
    5066 Axis 0.01853357 0.07109256 0.99729753 
    5067 Axis point 175.40284287 163.43179598 0.00000000 
    5068 Rotation angle (degrees) 94.93314517 
    5069 Shift along axis -16.73247641 
    5070  
    5071 
    5072 > ui mousemode right "rotate selected models"
    5073 
    5074 > view matrix models
    5075 > #10,0.036524,-0.99823,0.046952,343.41,0.99875,0.034856,-0.035862,3.4539,0.034162,0.048204,0.99825,-30.605
    5076 
    5077 > ui mousemode right "translate selected models"
    5078 
    5079 > view matrix models
    5080 > #10,0.036524,-0.99823,0.046952,345.96,0.99875,0.034856,-0.035862,5.3279,0.034162,0.048204,0.99825,-29.295
    5081 
    5082 > fitmap #10 inMap #6
    5083 
    5084 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    5085 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5086 average map value = 0.01551, steps = 104 
    5087 shifted from previous position = 2.96 
    5088 rotated from previous position = 10.5 degrees 
    5089 atoms outside contour = 1389, contour level = 0.023968 
    5090  
    5091 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    5092 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5093 Matrix rotation and translation 
    5094 -0.13813968 -0.99041175 -0.00141216 384.58588147 
    5095 0.99041090 -0.13813652 -0.00213142 27.35866323 
    5096 0.00191591 -0.00169305 0.99999673 -17.34805812 
    5097 Axis 0.00022130 -0.00168014 0.99999856 
    5098 Axis point 180.40369954 181.00058238 0.00000000 
    5099 Rotation angle (degrees) 97.94021488 
    5100 Shift along axis -17.30888952 
    5101  
    5102 
    5103 > fitmap #10 inMap #6
    5104 
    5105 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#10) to map
    5106 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5107 average map value = 0.01551, steps = 40 
    5108 shifted from previous position = 0.0105 
    5109 rotated from previous position = 0.0747 degrees 
    5110 atoms outside contour = 1383, contour level = 0.023968 
    5111  
    5112 Position of copy of copy of Rhom_Model_Trimmed.pdb (#10) relative to
    5113 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5114 Matrix rotation and translation 
    5115 -0.13937586 -0.99023853 -0.00142503 384.76046070 
    5116 0.99023835 -0.13937330 -0.00175892 27.48747765 
    5117 0.00154314 -0.00165627 0.99999744 -17.30403526 
    5118 Axis 0.00005183 -0.00149871 0.99999888 
    5119 Axis point 180.44716904 180.93035717 0.00000000 
    5120 Rotation angle (degrees) 98.01173177 
    5121 Shift along axis -17.32526882 
    5122  
    5123 
    5124 > combine #8 #11
    5125 
    5126 > select subtract #10
    5127 
    5128 Nothing selected 
    5129 
    5130 > select add #11
    5131 
    5132 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    5133 
    5134 > color #11 #fa900bff
    5135 
    5136 > view matrix models
    5137 > #11,0.83921,-0.54381,-0.001679,127.81,0.54381,0.83921,0.001063,-62.498,0.00083101,-0.0018051,1,-74.65
    5138 
    5139 > view matrix models
    5140 > #11,0.83921,-0.54381,-0.001679,129.69,0.54381,0.83921,0.001063,-55.838,0.00083101,-0.0018051,1,-60.331
    5141 
    5142 > view matrix models
    5143 > #11,0.83921,-0.54381,-0.001679,140.33,0.54381,0.83921,0.001063,-68.187,0.00083101,-0.0018051,1,-67.579
    5144 
    5145 > view matrix models
    5146 > #11,0.83921,-0.54381,-0.001679,142.45,0.54381,0.83921,0.001063,-71.508,0.00083101,-0.0018051,1,-47.577
    5147 
    5148 > view matrix models
    5149 > #11,0.83921,-0.54381,-0.001679,141.22,0.54381,0.83921,0.001063,-71.99,0.00083101,-0.0018051,1,-44.845
    5150 
    5151 > fitmap #11 inMap #6
    5152 
    5153 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
    5154 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5155 average map value = 0.006076, steps = 96 
    5156 shifted from previous position = 4.89 
    5157 rotated from previous position = 4.43 degrees 
    5158 atoms outside contour = 1875, contour level = 0.023968 
    5159  
    5160 Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
    5161 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5162 Matrix rotation and translation 
    5163 0.81657423 -0.57583658 0.04023395 140.33745160 
    5164 0.57722589 0.81506279 -0.04982901 -58.52041925 
    5165 -0.00409983 0.06391316 0.99794704 -55.51684004 
    5166 Axis 0.09809531 0.03823504 0.99444225 
    5167 Axis point 162.38301947 199.42630799 0.00000000 
    5168 Rotation angle (degrees) 35.43319678 
    5169 Shift along axis -43.67937652 
    5170  
    5171 
    5172 > ui mousemode right "rotate selected models"
    5173 
    5174 > view matrix models
    5175 > #11,0.52662,-0.82285,0.21353,185.86,0.84448,0.53521,-0.020263,-65.014,-0.097608,0.19099,0.97673,-55.282
    5176 
    5177 > ui mousemode right "translate selected models"
    5178 
    5179 > view matrix models
    5180 > #11,0.52662,-0.82285,0.21353,176.37,0.84448,0.53521,-0.020263,-66.585,-0.097608,0.19099,0.97673,-58.076
    5181 
    5182 > view matrix models
    5183 > #11,0.52662,-0.82285,0.21353,178.5,0.84448,0.53521,-0.020263,-61.336,-0.097608,0.19099,0.97673,-55.023
    5184 
    5185 > ui mousemode right "rotate selected models"
    5186 
    5187 > view matrix models
    5188 > #11,0.45944,-0.85528,0.23963,188.37,0.86075,0.49529,0.11744,-87.996,-0.21913,0.1523,0.96374,-27.035
    5189 
    5190 > view matrix models
    5191 > #11,0.40917,-0.90158,0.14047,225.05,0.89858,0.42489,0.10968,-81.637,-0.15857,0.08135,0.98399,-30.33
    5192 
    5193 > view matrix models
    5194 > #11,0.41704,-0.90286,0.10453,231.85,0.86747,0.42972,0.25067,-108.27,-0.27124,-0.013862,0.96241,6.6926
    5195 
    5196 > ui mousemode right "translate selected models"
    5197 
    5198 > view matrix models
    5199 > #11,0.41704,-0.90286,0.10453,241.1,0.86747,0.42972,0.25067,-121.85,-0.27124,-0.013862,0.96241,2.9249
    5200 
    5201 > fitmap #11 inMap #6
    5202 
    5203 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
    5204 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5205 average map value = 0.005896, steps = 348 
    5206 shifted from previous position = 11.5 
    5207 rotated from previous position = 11.8 degrees 
    5208 atoms outside contour = 1870, contour level = 0.023968 
    5209  
    5210 Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
    5211 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5212 Matrix rotation and translation 
    5213 0.34231509 -0.93025377 0.13209204 250.16002095 
    5214 0.93230971 0.35375238 0.07521875 -72.48407893 
    5215 -0.11670040 0.09740217 0.98837940 -45.66632024 
    5216 Axis 0.01180448 0.13239012 0.99112739 
    5217 Axis point 172.63441708 147.52283588 0.00000000 
    5218 Rotation angle (degrees) 69.98760426 
    5219 Shift along axis -51.90430775 
    5220  
    5221 
    5222 > view matrix models
    5223 > #11,0.34232,-0.93025,0.13209,250.65,0.93231,0.35375,0.075219,-71.924,-0.1167,0.097402,0.98838,-38.685
    5224 
    5225 > view matrix models
    5226 > #11,0.34232,-0.93025,0.13209,249.85,0.93231,0.35375,0.075219,-72.636,-0.1167,0.097402,0.98838,-38.466
    5227 
    5228 > fitmap #11 inMap #6
    5229 
    5230 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
    5231 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5232 average map value = 0.006467, steps = 144 
    5233 shifted from previous position = 2.96 
    5234 rotated from previous position = 3.19 degrees 
    5235 atoms outside contour = 1862, contour level = 0.023968 
    5236  
    5237 Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
    5238 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5239 Matrix rotation and translation 
    5240 0.29844642 -0.94580246 0.12801345 261.00076529 
    5241 0.95037853 0.30683524 0.05131068 -60.94323024 
    5242 -0.08780880 0.10634775 0.99044423 -45.93186702 
    5243 Axis 0.02882703 0.11304227 0.99317191 
    5244 Axis point 169.39975677 151.67490776 0.00000000 
    5245 Rotation angle (degrees) 72.67070827 
    5246 Shift along axis -44.98352332 
    5247  
    5248 
    5249 > view matrix models
    5250 > #11,0.29845,-0.9458,0.12801,258.8,0.95038,0.30684,0.051311,-31.302,-0.087809,0.10635,0.99044,-16.122
    5251 
    5252 > view matrix models
    5253 > #11,0.29845,-0.9458,0.12801,259.69,0.95038,0.30684,0.051311,-58.838,-0.087809,0.10635,0.99044,-44.18
    5254 
    5255 > fitmap #11 inMap #6
    5256 
    5257 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
    5258 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5259 average map value = 0.006465, steps = 56 
    5260 shifted from previous position = 3.03 
    5261 rotated from previous position = 0.7 degrees 
    5262 atoms outside contour = 1868, contour level = 0.023968 
    5263  
    5264 Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
    5265 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5266 Matrix rotation and translation 
    5267 0.28685521 -0.94921448 0.12925156 263.08834283 
    5268 0.95377706 0.29560265 0.05411460 -60.36561896 
    5269 -0.08957347 0.10775412 0.99013416 -45.80581919 
    5270 Axis 0.02799144 0.11419247 0.99306423 
    5271 Axis point 169.51816585 151.13280022 0.00000000 
    5272 Rotation angle (degrees) 73.36366733 
    5273 Shift along axis -45.01719708 
    5274  
    5275 
    5276 > ui mousemode right "rotate selected models"
    5277 
    5278 > view matrix models
    5279 > #11,0.27127,-0.95999,0.06945,280.28,0.94821,0.27894,0.15199,-78.367,-0.16528,0.024623,0.98594,-20.281
    5280 
    5281 > view matrix models
    5282 > #11,0.46519,-0.88166,0.079181,235.51,0.88293,0.46854,0.029929,-70.026,-0.063487,0.055989,0.99641,-43.478
    5283 
    5284 > view matrix models
    5285 > #11,0.45154,-0.89107,0.045845,246.39,0.89186,0.45226,0.0062626,-63.8,-0.026315,0.03806,0.99893,-47.213
    5286 
    5287 > ui mousemode right "translate selected models"
    5288 
    5289 > view matrix models
    5290 > #11,0.45154,-0.89107,0.045845,248.33,0.89186,0.45226,0.0062626,-62.235,-0.026315,0.03806,0.99893,-46.991
    5291 
    5292 > fitmap #11 inMap #6
    5293 
    5294 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
    5295 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5296 average map value = 0.0153, steps = 68 
    5297 shifted from previous position = 3.5 
    5298 rotated from previous position = 3.51 degrees 
    5299 atoms outside contour = 1416, contour level = 0.023968 
    5300  
    5301 Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
    5302 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5303 Matrix rotation and translation 
    5304 0.41812557 -0.90838757 -0.00174010 269.65857217 
    5305 0.90838629 0.41812833 -0.00174675 -58.40077410 
    5306 0.00231431 -0.00085032 0.99999696 -45.70947283 
    5307 Axis 0.00049342 -0.00223165 0.99999739 
    5308 Axis point 180.50582186 181.25443343 0.00000000 
    5309 Rotation angle (degrees) 65.28370542 
    5310 Shift along axis -45.44596915 
    5311  
    5312 
    5313 > fitmap #11 inMap #6
    5314 
    5315 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#11) to map
    5316 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5317 average map value = 0.0153, steps = 28 
    5318 shifted from previous position = 0.0118 
    5319 rotated from previous position = 0.0942 degrees 
    5320 atoms outside contour = 1418, contour level = 0.023968 
    5321  
    5322 Position of copy of copy of Rhom_Model_Trimmed.pdb (#11) relative to
    5323 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5324 Matrix rotation and translation 
    5325 0.41668703 -0.90904881 -0.00147520 269.92917762 
    5326 0.90904806 0.41668895 -0.00139659 -58.36709490 
    5327 0.00188427 -0.00075909 0.99999794 -45.64439480 
    5328 Axis 0.00035064 -0.00184779 0.99999823 
    5329 Axis point 180.51849052 181.11935409 0.00000000 
    5330 Rotation angle (degrees) 65.37440291 
    5331 Shift along axis -45.44181562 
    5332  
    5333 
    5334 > combine #11 #12
    5335 
    5336 > select subtract #11
    5337 
    5338 Nothing selected 
    5339 
    5340 > select add #12
    5341 
    5342 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    5343 
    5344 > color #12 #fdcea1ff
    5345 
    5346 > color #12 #fdd0a2ff
    5347 
    5348 > view matrix models
    5349 > #12,0.41669,-0.90905,-0.0014752,275.52,0.90905,0.41669,-0.0013966,-53.045,0.0018843,-0.00075909,1,-41.899
    5350 
    5351 > color #12 #fddf92ff
    5352 
    5353 > color #12 #907f53ff
    5354 
    5355 > view matrix models
    5356 > #12,0.41669,-0.90905,-0.0014752,260.15,0.90905,0.41669,-0.0013966,-21.387,0.0018843,-0.00075909,1,-34.455
    5357 
    5358 > view matrix models
    5359 > #12,0.41669,-0.90905,-0.0014752,261.69,0.90905,0.41669,-0.0013966,-40.973,0.0018843,-0.00075909,1,-33.174
    5360 
    5361 > view matrix models
    5362 > #12,0.41669,-0.90905,-0.0014752,271.34,0.90905,0.41669,-0.0013966,-38.435,0.0018843,-0.00075909,1,-58.847
    5363 
    5364 > view matrix models
    5365 > #12,0.41669,-0.90905,-0.0014752,273.93,0.90905,0.41669,-0.0013966,-34.549,0.0018843,-0.00075909,1,-58.58
    5366 
    5367 > view matrix models
    5368 > #12,0.41669,-0.90905,-0.0014752,271.78,0.90905,0.41669,-0.0013966,-26.551,0.0018843,-0.00075909,1,-58.665
    5369 
    5370 > view matrix models
    5371 > #12,0.41669,-0.90905,-0.0014752,275.95,0.90905,0.41669,-0.0013966,-44.809,0.0018843,-0.00075909,1,-58.409
    5372 
    5373 > fitmap #12 inMap #6
    5374 
    5375 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
    5376 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5377 average map value = 0.004878, steps = 288 
    5378 shifted from previous position = 4.43 
    5379 rotated from previous position = 12.6 degrees 
    5380 atoms outside contour = 1916, contour level = 0.023968 
    5381  
    5382 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
    5383 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5384 Matrix rotation and translation 
    5385 0.59784117 -0.79965383 -0.05603292 241.65333054 
    5386 0.80057094 0.59916810 -0.00915175 -56.49525996 
    5387 0.04089137 -0.03938704 0.99838698 -55.49664326 
    5388 Axis -0.01885649 -0.06044762 0.99799325 
    5389 Axis point 180.11996264 210.27923471 0.00000000 
    5390 Rotation angle (degrees) 53.29478498 
    5391 Shift along axis -56.52700372 
    5392  
    5393 
    5394 > ui mousemode right "rotate selected models"
    5395 
    5396 > view matrix models
    5397 > #12,0.57919,-0.81122,0.080361,216.53,0.81104,0.56351,-0.15704,-20.405,0.08211,0.15613,0.98432,-88.576
    5398 
    5399 > view matrix models
    5400 > #12,0.5452,-0.7788,0.31022,166.73,0.81615,0.40858,-0.40862,57.286,0.19148,0.47596,0.85837,-126.82
    5401 
    5402 > view matrix models
    5403 > #12,0.51124,-0.85796,0.050323,240.96,0.85391,0.50046,-0.14274,-20.788,0.097278,0.11594,0.98848,-85.806
    5404 
    5405 > ui mousemode right "translate selected models"
    5406 
    5407 > view matrix models
    5408 > #12,0.51124,-0.85796,0.050323,254.16,0.85391,0.50046,-0.14274,-20.694,0.097278,0.11594,0.98848,-86.063
    5409 
    5410 > fitmap #12 inMap #6
    5411 
    5412 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
    5413 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5414 average map value = 0.006929, steps = 160 
    5415 shifted from previous position = 3.73 
    5416 rotated from previous position = 6.46 degrees 
    5417 atoms outside contour = 1821, contour level = 0.023968 
    5418  
    5419 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
    5420 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5421 Matrix rotation and translation 
    5422 0.43841518 -0.89775409 0.04277531 270.20521183 
    5423 0.88182925 0.42046526 -0.21350912 2.15185970 
    5424 0.17369316 0.13132615 0.97600417 -95.46542637 
    5425 Axis 0.18974027 -0.07203552 0.97918819 
    5426 Axis point 145.06870085 219.18601655 0.00000000 
    5427 Rotation angle (degrees) 65.32678584 
    5428 Shift along axis -42.36481828 
    5429  
    5430 
    5431 > ui mousemode right "rotate selected models"
    5432 
    5433 > view matrix models
    5434 > #12,0.36092,-0.92627,-0.10841,319.89,0.92707,0.36899,-0.066261,-29.442,0.10138,-0.076585,0.9919,-55.973
    5435 
    5436 > ui mousemode right "translate selected models"
    5437 
    5438 > view matrix models
    5439 > #12,0.36092,-0.92627,-0.10841,317.2,0.92707,0.36899,-0.066261,-29.19,0.10138,-0.076585,0.9919,-61.851
    5440 
    5441 > view matrix models
    5442 > #12,0.36092,-0.92627,-0.10841,318.31,0.92707,0.36899,-0.066261,-26.441,0.10138,-0.076585,0.9919,-67.227
    5443 
    5444 > view matrix models
    5445 > #12,0.36092,-0.92627,-0.10841,317.92,0.92707,0.36899,-0.066261,-25.488,0.10138,-0.076585,0.9919,-68.399
    5446 
    5447 > fitmap #12 inMap #6
    5448 
    5449 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
    5450 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5451 average map value = 0.009733, steps = 196 
    5452 shifted from previous position = 1.79 
    5453 rotated from previous position = 23.1 degrees 
    5454 atoms outside contour = 1684, contour level = 0.023968 
    5455  
    5456 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
    5457 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5458 Matrix rotation and translation 
    5459 -0.01451756 -0.99989382 -0.00126465 365.67346293 
    5460 0.99906178 -0.01445385 -0.04082468 15.29663570 
    5461 0.04080206 -0.00185614 0.99916553 -69.80594902 
    5462 Axis 0.01948643 -0.02103569 0.99958880 
    5463 Axis point 176.63168778 187.72457334 0.00000000 
    5464 Rotation angle (degrees) 90.85390725 
    5465 Shift along axis -62.97334880 
    5466  
    5467 
    5468 > view matrix models
    5469 > #12,-0.014518,-0.99989,-0.0012646,367.03,0.99906,-0.014454,-0.040825,15.826,0.040802,-0.0018561,0.99917,-74.818
    5470 
    5471 > fitmap #12 inMap #6
    5472 
    5473 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
    5474 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5475 average map value = 0.0152, steps = 72 
    5476 shifted from previous position = 0.421 
    5477 rotated from previous position = 7.71 degrees 
    5478 atoms outside contour = 1420, contour level = 0.023968 
    5479  
    5480 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
    5481 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5482 Matrix rotation and translation 
    5483 -0.14271734 -0.98976289 -0.00108614 385.23498414 
    5484 0.98976203 -0.14271515 -0.00187556 28.27250384 
    5485 0.00170135 -0.00134269 0.99999765 -69.03468274 
    5486 Axis 0.00026919 -0.00140816 0.99999897 
    5487 Axis point 180.42473254 180.93129368 0.00000000 
    5488 Rotation angle (degrees) 98.20512224 
    5489 Shift along axis -68.97072331 
    5490  
    5491 
    5492 > view matrix models
    5493 > #12,-0.14272,-0.98976,-0.0010861,382.63,0.98976,-0.14272,-0.0018756,30.527,0.0017013,-0.0013427,1,-66.248
    5494 
    5495 > view matrix models
    5496 > #12,-0.14272,-0.98976,-0.0010861,384.64,0.98976,-0.14272,-0.0018756,28.858,0.0017013,-0.0013427,1,-67.055
    5497 
    5498 > fitmap #12 inMap #6
    5499 
    5500 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
    5501 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5502 average map value = 0.0152, steps = 68 
    5503 shifted from previous position = 2.15 
    5504 rotated from previous position = 0.143 degrees 
    5505 atoms outside contour = 1411, contour level = 0.023968 
    5506  
    5507 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
    5508 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5509 Matrix rotation and translation 
    5510 -0.14504147 -0.98942497 -0.00109937 385.55904562 
    5511 0.98942520 -0.14504036 -0.00103048 28.48597091 
    5512 0.00086013 -0.00123721 0.99999887 -68.91162805 
    5513 Axis -0.00010447 -0.00099022 0.99999950 
    5514 Axis point 180.49812408 180.78581835 0.00000000 
    5515 Rotation angle (degrees) 98.33968130 
    5516 Shift along axis -68.98008024 
    5517  
    5518 
    5519 > fitmap #12 inMap #6
    5520 
    5521 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) to map
    5522 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5523 average map value = 0.0152, steps = 28 
    5524 shifted from previous position = 0.0184 
    5525 rotated from previous position = 0.0213 degrees 
    5526 atoms outside contour = 1411, contour level = 0.023968 
    5527  
    5528 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#12) relative to
    5529 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5530 Matrix rotation and translation 
    5531 -0.14485014 -0.98945294 -0.00114753 385.53088353 
    5532 0.98945292 -0.14484858 -0.00134371 28.51938071 
    5533 0.00116331 -0.00133006 0.99999844 -68.93174834 
    5534 Axis 0.00000689 -0.00116774 0.99999932 
    5535 Axis point 180.47632300 180.82013677 0.00000000 
    5536 Rotation angle (degrees) 98.32860100 
    5537 Shift along axis -68.96234661 
    5538  
    5539 
    5540 > select clear
    5541 
    5542 > combine #10 #13
    5543 
    5544 > color #13 #5cfba5ff
    5545 
    5546 > select add #13
    5547 
    5548 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    5549 
    5550 > view matrix models
    5551 > #13,-0.13938,-0.99024,-0.001425,390.74,0.99024,-0.13937,-0.0017589,35.776,0.0015431,-0.0016563,1,-16.172
    5552 
    5553 > view matrix models
    5554 > #13,-0.13938,-0.99024,-0.001425,397.94,0.99024,-0.13937,-0.0017589,50.935,0.0015431,-0.0016563,1,-29.611
    5555 
    5556 > view matrix models
    5557 > #13,-0.13938,-0.99024,-0.001425,393.8,0.99024,-0.13937,-0.0017589,37.23,0.0015431,-0.0016563,1,-38.821
    5558 
    5559 > ui mousemode right "rotate selected models"
    5560 
    5561 > view matrix models
    5562 > #13,-0.22322,-0.97418,-0.033727,411.74,0.96925,-0.2255,0.098514,31.672,-0.10358,-0.010699,0.99456,-19.579
    5563 
    5564 > view matrix models
    5565 > #13,-0.31518,-0.93472,0.16423,377.05,0.94739,-0.32007,-0.0035591,71.795,0.055893,0.15447,0.98642,-68.123
    5566 
    5567 > view matrix models
    5568 > #13,-0.29193,-0.9562,-0.021388,417.22,0.94427,-0.2917,0.15256,33.841,-0.15211,0.02434,0.98806,-15.761
    5569 
    5570 > view matrix models
    5571 > #13,-0.1293,-0.98994,0.057462,379.28,0.98969,-0.13244,-0.054613,47.829,0.061673,0.049808,0.99685,-55.471
    5572 
    5573 > view matrix models
    5574 > #13,-0.15668,-0.98765,-0.00041457,395.94,0.98737,-0.15665,0.023669,34.739,-0.023442,0.0032993,0.99972,-35.545
    5575 
    5576 > view matrix models
    5577 > #13,-0.3085,-0.94755,0.08349,395.6,0.94964,-0.30173,0.084514,49.392,-0.05489,0.10536,0.99292,-44.525
    5578 
    5579 > view matrix models
    5580 > #13,-0.095329,-0.9832,0.15565,351.38,0.97209,-0.12562,-0.19813,80.984,0.21436,0.13242,0.96774,-85.847
    5581 
    5582 > view matrix models
    5583 > #13,-0.44061,-0.89769,0.0045125,426.29,0.89694,-0.44003,0.043279,87.724,-0.036866,0.023117,0.99905,-36.271
    5584 
    5585 > view matrix models
    5586 > #13,-0.55642,-0.8284,-0.064412,449.26,0.81487,-0.5592,0.1526,94.886,-0.16243,0.032424,0.98619,-14.937
    5587 
    5588 > view matrix models
    5589 > #13,-0.59514,-0.79108,-0.1414,466.59,0.774,-0.61159,0.16396,106.82,-0.21619,-0.011864,0.97628,2.4696
    5590 
    5591 > view matrix models
    5592 > #13,-0.48388,-0.87501,-0.015016,434,0.8698,-0.48275,0.10194,85.669,-0.096448,0.036266,0.99468,-27.849
    5593 
    5594 > ui mousemode right "translate selected models"
    5595 
    5596 > view matrix models
    5597 > #13,-0.48388,-0.87501,-0.015016,438.92,0.8698,-0.48275,0.10194,87.642,-0.096448,0.036266,0.99468,-31.876
    5598 
    5599 > view matrix models
    5600 > #13,-0.48388,-0.87501,-0.015016,431.15,0.8698,-0.48275,0.10194,88.198,-0.096448,0.036266,0.99468,-28.603
    5601 
    5602 > fitmap #13 inMap #6
    5603 
    5604 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
    5605 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5606 average map value = 0.006426, steps = 80 
    5607 shifted from previous position = 3.06 
    5608 rotated from previous position = 2.52 degrees 
    5609 atoms outside contour = 1852, contour level = 0.023968 
    5610  
    5611 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
    5612 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5613 Matrix rotation and translation 
    5614 -0.48533838 -0.87385507 0.02870504 420.28345409 
    5615 0.87143258 -0.48080230 0.09713087 88.84878531 
    5616 -0.07107685 0.07215584 0.99485759 -40.50938727 
    5617 Axis -0.01428519 0.05707314 0.99826779 
    5618 Axis point 182.97112914 169.27109588 0.00000000 
    5619 Rotation angle (degrees) 119.05451322 
    5620 Shift along axis -41.37216604 
    5621  
    5622 
    5623 > ui mousemode right "rotate selected models"
    5624 
    5625 > view matrix models
    5626 > #13,-0.55359,-0.83217,-0.031926,438.07,0.82013,-0.55144,0.15264,95.546,-0.14463,0.058319,0.98777,-25.189
    5627 
    5628 > view matrix models
    5629 > #13,-0.58465,-0.80934,-0.056188,444.84,0.80611,-0.58734,0.072197,120.81,-0.091433,-0.003084,0.99581,-26.09
    5630 
    5631 > ui mousemode right "translate selected models"
    5632 
    5633 > view matrix models
    5634 > #13,-0.58465,-0.80934,-0.056188,445.76,0.80611,-0.58734,0.072197,124.82,-0.091433,-0.003084,0.99581,-25.914
    5635 
    5636 > view matrix models
    5637 > #13,-0.58465,-0.80934,-0.056188,447.06,0.80611,-0.58734,0.072197,125.52,-0.091433,-0.003084,0.99581,-25.715
    5638 
    5639 > fitmap #13 inMap #6
    5640 
    5641 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
    5642 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5643 average map value = 0.01542, steps = 84 
    5644 shifted from previous position = 5.01 
    5645 rotated from previous position = 7.2 degrees 
    5646 atoms outside contour = 1426, contour level = 0.023968 
    5647  
    5648 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
    5649 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5650 Matrix rotation and translation 
    5651 -0.65254254 -0.75775197 0.00042672 434.89231337 
    5652 0.75774784 -0.65254066 -0.00298275 162.45268924 
    5653 0.00253863 -0.00162303 0.99999546 -40.94217263 
    5654 Axis 0.00089721 -0.00139354 0.99999863 
    5655 Axis point 180.23229309 180.91324568 0.00000000 
    5656 Rotation angle (degrees) 130.73367430 
    5657 Shift along axis -40.77831174 
    5658  
    5659 
    5660 > view matrix models
    5661 > #13,-0.65254,-0.75775,0.00042672,429.72,0.75775,-0.65254,-0.0029827,162.3,0.0025386,-0.001623,1,-34.114
    5662 
    5663 > view matrix models
    5664 > #13,-0.65254,-0.75775,0.00042672,435.26,0.75775,-0.65254,-0.0029827,162.95,0.0025386,-0.001623,1,-39.883
    5665 
    5666 > fitmap #13 inMap #6
    5667 
    5668 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
    5669 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5670 average map value = 0.01543, steps = 64 
    5671 shifted from previous position = 1.23 
    5672 rotated from previous position = 0.0986 degrees 
    5673 atoms outside contour = 1427, contour level = 0.023968 
    5674  
    5675 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
    5676 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5677 Matrix rotation and translation 
    5678 -0.65377561 -0.75668844 0.00025641 434.95874847 
    5679 0.75668577 -0.65377414 -0.00245364 162.68609251 
    5680 0.00202428 -0.00141010 0.99999696 -40.89411002 
    5681 Axis 0.00068954 -0.00116816 0.99999908 
    5682 Axis point 180.28570918 180.83369070 0.00000000 
    5683 Rotation angle (degrees) 130.82693472 
    5684 Shift along axis -40.78419355 
    5685  
    5686 
    5687 > fitmap #13 inMap #6
    5688 
    5689 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
    5690 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5691 average map value = 0.01543, steps = 40 
    5692 shifted from previous position = 0.0172 
    5693 rotated from previous position = 0.0082 degrees 
    5694 atoms outside contour = 1430, contour level = 0.023968 
    5695  
    5696 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
    5697 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5698 Matrix rotation and translation 
    5699 -0.65384803 -0.75662588 0.00016123 434.99221686 
    5700 0.75662326 -0.65384630 -0.00250108 162.71261932 
    5701 0.00199780 -0.00151333 0.99999686 -40.86225002 
    5702 Axis 0.00065273 -0.00121366 0.99999905 
    5703 Axis point 180.30073471 180.84078338 0.00000000 
    5704 Rotation angle (degrees) 130.83241280 
    5705 Shift along axis -40.77575533 
    5706  
    5707 
    5708 > fitmap #13 inMap #6
    5709 
    5710 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) to map
    5711 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5712 average map value = 0.01543, steps = 36 
    5713 shifted from previous position = 0.00381 
    5714 rotated from previous position = 0.00735 degrees 
    5715 atoms outside contour = 1431, contour level = 0.023968 
    5716  
    5717 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#13) relative to
    5718 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5719 Matrix rotation and translation 
    5720 -0.65377633 -0.75668783 0.00020317 434.97885633 
    5721 0.75668499 -0.65377457 -0.00257679 162.71046619 
    5722 0.00208265 -0.00153091 0.99999666 -40.87463391 
    5723 Axis 0.00069109 -0.00124191 0.99999899 
    5724 Axis point 180.29094142 180.84887818 0.00000000 
    5725 Rotation angle (degrees) 130.82698946 
    5726 Shift along axis -40.77605594 
    5727  
    5728 
    5729 > select #6
    5730 
    5731 2 models selected 
    5732 
    5733 > select clear
    5734 
    5735 > combine #13 #14
    5736 
    5737 > select add #14
    5738 
    5739 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    5740 
    5741 > color #14 #5d9df8ff
    5742 
    5743 > view matrix models
    5744 > #14,-0.65378,-0.75669,0.00020317,429.14,0.75668,-0.65377,-0.0025768,160.04,0.0020826,-0.0015309,1,-41.378
    5745 
    5746 > view matrix models
    5747 > #14,-0.65378,-0.75669,0.00020317,427.91,0.75668,-0.65377,-0.0025768,166.84,0.0020826,-0.0015309,1,-50.434
    5748 
    5749 > view matrix models
    5750 > #14,-0.65378,-0.75669,0.00020317,428.77,0.75668,-0.65377,-0.0025768,159.09,0.0020826,-0.0015309,1,-82.286
    5751 
    5752 > view matrix models
    5753 > #14,-0.65378,-0.75669,0.00020317,433.19,0.75668,-0.65377,-0.0025768,161.01,0.0020826,-0.0015309,1,-86.63
    5754 
    5755 > fitmap #14 inMap #6
    5756 
    5757 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14) to
    5758 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5759 average map value = 0.009575, steps = 108 
    5760 shifted from previous position = 1.75 
    5761 rotated from previous position = 5.99 degrees 
    5762 atoms outside contour = 1708, contour level = 0.023968 
    5763  
    5764 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14)
    5765 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5766 Matrix rotation and translation 
    5767 -0.57487439 -0.81804626 0.01788198 427.45471883 
    5768 0.81754655 -0.57514946 -0.02864840 146.12543514 
    5769 0.03372053 -0.00184988 0.99942959 -92.24899855 
    5770 Axis 0.01638162 -0.00968192 0.99981894 
    5771 Axis point 176.75755505 183.97878147 0.00000000 
    5772 Rotation angle (degrees) 125.12044289 
    5773 Shift along axis -86.64466852 
    5774  
    5775 
    5776 > view matrix models
    5777 > #14,-0.57487,-0.81805,0.017882,427.7,0.81755,-0.57515,-0.028648,146.6,0.033721,-0.0018499,0.99943,-96.339
    5778 
    5779 > fitmap #14 inMap #6
    5780 
    5781 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14) to
    5782 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5783 average map value = 0.01479, steps = 68 
    5784 shifted from previous position = 1.18 
    5785 rotated from previous position = 5.97 degrees 
    5786 atoms outside contour = 1467, contour level = 0.023968 
    5787  
    5788 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14)
    5789 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5790 Matrix rotation and translation 
    5791 -0.65371770 -0.75673842 0.00037247 434.95554336 
    5792 0.75673243 -0.65371434 -0.00368724 163.13177019 
    5793 0.00303377 -0.00212855 0.99999313 -92.60778167 
    5794 Axis 0.00102987 -0.00175840 0.99999792 
    5795 Axis point 180.23827365 181.02362112 0.00000000 
    5796 Rotation angle (degrees) 130.82262338 
    5797 Shift along axis -92.44649068 
    5798  
    5799 
    5800 > fitmap #14 inMap #6
    5801 
    5802 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14) to
    5803 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5804 average map value = 0.01479, steps = 28 
    5805 shifted from previous position = 0.0145 
    5806 rotated from previous position = 0.0678 degrees 
    5807 atoms outside contour = 1466, contour level = 0.023968 
    5808  
    5809 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14)
    5810 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5811 Matrix rotation and translation 
    5812 -0.65456110 -0.75600905 0.00028293 434.98815166 
    5813 0.75600435 -0.65455826 -0.00330229 163.30085431 
    5814 0.00268175 -0.00194766 0.99999451 -92.58316743 
    5815 Axis 0.00089591 -0.00158651 0.99999834 
    5816 Axis point 180.26102267 180.97416238 0.00000000 
    5817 Rotation angle (degrees) 130.88647901 
    5818 Shift along axis -92.45238126 
    5819  
    5820 
    5821 > fitmap #14 inMap #6
    5822 
    5823 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14) to
    5824 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5825 average map value = 0.01479, steps = 28 
    5826 shifted from previous position = 0.0101 
    5827 rotated from previous position = 0.0302 degrees 
    5828 atoms outside contour = 1466, contour level = 0.023968 
    5829  
    5830 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#14)
    5831 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5832 Matrix rotation and translation 
    5833 -0.65489405 -0.75572069 0.00012939 435.02833673 
    5834 0.75571691 -0.65489130 -0.00305688 163.33646247 
    5835 0.00239489 -0.00190415 0.99999532 -92.53818609 
    5836 Axis 0.00076267 -0.00149890 0.99999859 
    5837 Axis point 180.28665159 180.94454816 0.00000000 
    5838 Rotation angle (degrees) 130.91169005 
    5839 Shift along axis -92.45109625 
    5840  
    5841 
    5842 > select clear
    5843 
    5844 > combine #14 #15
    5845 
    5846 > color #15 #001afaff
    5847 
    5848 > select add #15
    5849 
    5850 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    5851 
    5852 > view matrix models
    5853 > #15,-0.65489,-0.75572,0.00012939,429.61,0.75572,-0.65489,-0.0030569,168.87,0.0023949,-0.0019041,1,-83.202
    5854 
    5855 > view matrix models
    5856 > #15,-0.65489,-0.75572,0.00012939,411.49,0.75572,-0.65489,-0.0030569,175.3,0.0023949,-0.0019041,1,-32.531
    5857 
    5858 > view matrix models
    5859 > #15,-0.65489,-0.75572,0.00012939,443.76,0.75572,-0.65489,-0.0030569,179.13,0.0023949,-0.0019041,1,-35.537
    5860 
    5861 > view matrix models
    5862 > #15,-0.65489,-0.75572,0.00012939,434.87,0.75572,-0.65489,-0.0030569,178.64,0.0023949,-0.0019041,1,-18.154
    5863 
    5864 > ui mousemode right "rotate selected models"
    5865 
    5866 > view matrix models
    5867 > #15,-0.769,-0.63804,-0.039394,443.8,0.61625,-0.72353,-0.31102,278.55,0.16994,-0.26345,0.94959,5.8985
    5868 
    5869 > view matrix models
    5870 > #15,-0.96474,-0.11945,-0.23453,439,0.13333,-0.99009,-0.044197,337.19,-0.22692,-0.073909,0.9711,35.467
    5871 
    5872 > view matrix models
    5873 > #15,-0.75645,0.56239,-0.33393,324.41,-0.61489,-0.7855,0.070023,399.97,-0.22292,0.2583,0.93999,-8.6813
    5874 
    5875 > ui mousemode right "translate selected models"
    5876 
    5877 > view matrix models
    5878 > #15,-0.75645,0.56239,-0.33393,320.14,-0.61489,-0.7855,0.070023,401.26,-0.22292,0.2583,0.93999,0.30825
    5879 
    5880 > fitmap #15 inMap #6
    5881 
    5882 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    5883 (#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5884 average map value = 0.005121, steps = 104 
    5885 shifted from previous position = 6.02 
    5886 rotated from previous position = 2.02 degrees 
    5887 atoms outside contour = 1903, contour level = 0.023968 
    5888  
    5889 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    5890 (#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5891 Matrix rotation and translation 
    5892 -0.77845615 0.54356952 -0.31390795 318.18019084 
    5893 -0.59209607 -0.80191465 0.07971913 399.12722474 
    5894 -0.20839450 0.24792151 0.94610077 -6.07534426 
    5895 Axis 0.14589596 -0.09152062 -0.98505753 
    5896 Axis point 223.14167276 148.98542872 0.00000000 
    5897 Rotation angle (degrees) 144.79901787 
    5898 Shift along axis 15.87739562 
    5899  
    5900 
    5901 > fitmap #15 inMap #6
    5902 
    5903 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    5904 (#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5905 average map value = 0.005124, steps = 44 
    5906 shifted from previous position = 0.0707 
    5907 rotated from previous position = 0.517 degrees 
    5908 atoms outside contour = 1901, contour level = 0.023968 
    5909  
    5910 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    5911 (#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5912 Matrix rotation and translation 
    5913 -0.78400131 0.53693045 -0.31152470 319.54998244 
    5914 -0.58501640 -0.80691352 0.08152543 398.33275173 
    5915 -0.20760001 0.24616310 0.94673437 -6.12378768 
    5916 Axis 0.14458205 -0.09126493 -0.98527496 
    5917 Axis point 222.72008055 149.14229636 0.00000000 
    5918 Rotation angle (degrees) 145.29458434 
    5919 Shift along axis 15.88099664 
    5920  
    5921 
    5922 > fitmap #15 inMap #6
    5923 
    5924 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    5925 (#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5926 average map value = 0.005133, steps = 48 
    5927 shifted from previous position = 0.0761 
    5928 rotated from previous position = 0.423 degrees 
    5929 atoms outside contour = 1903, contour level = 0.023968 
    5930  
    5931 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    5932 (#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5933 Matrix rotation and translation 
    5934 -0.78852207 0.53152337 -0.30937981 320.62061793 
    5935 -0.57925533 -0.81088551 0.08323432 397.60068565 
    5936 -0.20663061 0.24484200 0.94728886 -6.24399082 
    5937 Axis 0.14337519 -0.09115709 -0.98546128 
    5938 Axis point 222.34439659 149.23854177 0.00000000 
    5939 Rotation angle (degrees) 145.69604122 
    5940 Shift along axis 15.87813433 
    5941  
    5942 
    5943 > ui mousemode right "rotate selected models"
    5944 
    5945 > view matrix models
    5946 > #15,-0.62093,0.63683,-0.45705,310.38,-0.71673,-0.69735,0.0020727,419.98,-0.31741,0.32887,0.88944,11.265
    5947 
    5948 > view matrix models
    5949 > #15,-0.80397,0.47272,-0.36079,343.23,-0.52886,-0.84579,0.070329,397.71,-0.27191,0.24735,0.92999,7.5197
    5950 
    5951 > view matrix models
    5952 > #15,-0.81122,0.41644,-0.41048,363.77,-0.52894,-0.82187,0.21153,363.22,-0.24928,0.38872,0.887,-8.0788
    5953 
    5954 > view matrix models
    5955 > #15,-0.82664,0.44064,-0.35,349.32,-0.52386,-0.82973,0.19264,367.73,-0.20552,0.3426,0.91673,-14.541
    5956 
    5957 > view matrix models
    5958 > #15,-0.83143,0.4955,-0.25141,320.2,-0.53688,-0.83299,0.13377,383.17,-0.14314,0.24619,0.95859,-18.998
    5959 
    5960 > ui mousemode right "translate selected models"
    5961 
    5962 > view matrix models
    5963 > #15,-0.83143,0.4955,-0.25141,316,-0.53688,-0.83299,0.13377,376.41,-0.14314,0.24619,0.95859,-19.193
    5964 
    5965 > view matrix models
    5966 > #15,-0.83143,0.4955,-0.25141,320.52,-0.53688,-0.83299,0.13377,379.65,-0.14314,0.24619,0.95859,-20.219
    5967 
    5968 > fitmap #15 inMap #6
    5969 
    5970 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    5971 (#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5972 average map value = 0.005767, steps = 196 
    5973 shifted from previous position = 2.2 
    5974 rotated from previous position = 15.1 degrees 
    5975 atoms outside contour = 1882, contour level = 0.023968 
    5976  
    5977 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    5978 (#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    5979 Matrix rotation and translation 
    5980 -0.94183377 0.27294764 -0.19608348 358.54549760 
    5981 -0.30015240 -0.94561100 0.12541283 362.90534903 
    5982 -0.15118756 0.17697297 0.97253426 -10.93632536 
    5983 Axis 0.08933367 -0.07778717 -0.99295954 
    5984 Axis point 205.80615042 155.36122534 0.00000000 
    5985 Rotation angle (degrees) 163.22693237 
    5986 Shift along axis 14.66013236 
    5987  
    5988 
    5989 > ui mousemode right "rotate selected models"
    5990 
    5991 > view matrix models
    5992 > #15,-0.95046,0.25044,-0.18411,360.71,-0.26937,-0.9592,0.085826,368.74,-0.15511,0.13117,0.97915,-4.8237
    5993 
    5994 > fitmap #15 inMap #6
    5995 
    5996 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    5997 (#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    5998 average map value = 0.01541, steps = 172 
    5999 shifted from previous position = 3.5 
    6000 rotated from previous position = 33.7 degrees 
    6001 atoms outside contour = 1406, contour level = 0.023968 
    6002  
    6003 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6004 (#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6005 Matrix rotation and translation 
    6006 -0.95909560 -0.28308237 0.00002496 404.57865022 
    6007 0.28308209 -0.95909477 -0.00132637 302.90058101 
    6008 0.00039941 -0.00126505 0.99999912 -12.46340564 
    6009 Axis 0.00010831 -0.00066138 0.99999978 
    6010 Axis point 180.40657414 180.67635655 0.00000000 
    6011 Rotation angle (degrees) 163.55574787 
    6012 Shift along axis -12.61991658 
    6013  
    6014 
    6015 > fitmap #15 inMap #6
    6016 
    6017 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6018 (#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6019 average map value = 0.01541, steps = 28 
    6020 shifted from previous position = 0.00916 
    6021 rotated from previous position = 0.159 degrees 
    6022 atoms outside contour = 1409, contour level = 0.023968 
    6023  
    6024 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6025 (#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6026 Matrix rotation and translation 
    6027 -0.95834815 -0.28560123 0.00087474 404.66476513 
    6028 0.28559966 -0.95834771 -0.00158435 302.44950824 
    6029 0.00129079 -0.00126853 0.99999836 -12.60864137 
    6030 Axis 0.00055290 -0.00072839 0.99999958 
    6031 Axis point 180.28229783 180.72831890 0.00000000 
    6032 Rotation angle (degrees) 163.40524953 
    6033 Shift along axis -12.60519879 
    6034  
    6035 
    6036 > fitmap #15 inMap #6
    6037 
    6038 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6039 (#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6040 average map value = 0.01541, steps = 28 
    6041 shifted from previous position = 0.0177 
    6042 rotated from previous position = 0.0324 degrees 
    6043 atoms outside contour = 1409, contour level = 0.023968 
    6044  
    6045 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6046 (#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6047 Matrix rotation and translation 
    6048 -0.95819614 -0.28611020 0.00105144 404.66263623 
    6049 0.28610828 -0.95819584 -0.00166865 302.36126196 
    6050 0.00148490 -0.00129807 0.99999806 -12.63837959 
    6051 Axis 0.00064762 -0.00075752 0.99999950 
    6052 Axis point 180.24730920 180.73879762 0.00000000 
    6053 Rotation angle (degrees) 163.37482667 
    6054 Shift along axis -12.60534785 
    6055  
    6056 
    6057 > fitmap #15 inMap #6
    6058 
    6059 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6060 (#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6061 average map value = 0.01541, steps = 28 
    6062 shifted from previous position = 0.0163 
    6063 rotated from previous position = 0.0431 degrees 
    6064 atoms outside contour = 1412, contour level = 0.023968 
    6065  
    6066 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6067 (#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6068 Matrix rotation and translation 
    6069 -0.95840748 -0.28540195 0.00090922 404.62924917 
    6070 0.28540024 -0.95840700 -0.00165098 302.49574101 
    6071 0.00134260 -0.00132282 0.99999822 -12.59967698 
    6072 Axis 0.00057491 -0.00075924 0.99999955 
    6073 Axis point 180.27739544 180.72718716 0.00000000 
    6074 Rotation angle (degrees) 163.41716699 
    6075 Shift along axis -12.59671107 
    6076  
    6077 
    6078 > fitmap #15 inMap #6
    6079 
    6080 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6081 (#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6082 average map value = 0.01541, steps = 28 
    6083 shifted from previous position = 0.0276 
    6084 rotated from previous position = 0.0666 degrees 
    6085 atoms outside contour = 1408, contour level = 0.023968 
    6086  
    6087 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6088 (#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6089 Matrix rotation and translation 
    6090 -0.95808205 -0.28649169 0.00113641 404.68356052 
    6091 0.28648979 -0.95808198 -0.00158656 302.26874760 
    6092 0.00154331 -0.00119449 0.99999810 -12.67554724 
    6093 Axis 0.00068427 -0.00071015 0.99999951 
    6094 Axis point 180.23400109 180.73553329 0.00000000 
    6095 Rotation angle (degrees) 163.35201376 
    6096 Shift along axis -12.61328219 
    6097  
    6098 
    6099 > fitmap #15 inMap #6
    6100 
    6101 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6102 (#15) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6103 average map value = 0.01541, steps = 28 
    6104 shifted from previous position = 0.0199 
    6105 rotated from previous position = 0.0778 degrees 
    6106 atoms outside contour = 1408, contour level = 0.023968 
    6107  
    6108 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    6109 (#15) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6110 Matrix rotation and translation 
    6111 -0.95846392 -0.28521242 0.00089103 404.60991386 
    6112 0.28521079 -0.95846346 -0.00161447 302.52937505 
    6113 0.00131449 -0.00129328 0.99999830 -12.60603684 
    6114 Axis 0.00056307 -0.00074236 0.99999957 
    6115 Axis point 180.28045959 180.72226451 0.00000000 
    6116 Rotation angle (degrees) 163.42849490 
    6117 Shift along axis -12.60279113 
    6118  
    6119 
    6120 > combine #15 #16
    6121 
    6122 > color #16 #8882fbff
    6123 
    6124 > select subtract #15
    6125 
    6126 Nothing selected 
    6127 
    6128 > select add #16
    6129 
    6130 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    6131 
    6132 > view matrix models
    6133 > #16,-0.91363,-0.21533,0.34485,311.67,0.29373,-0.93605,0.19371,255.05,0.28108,0.27827,0.91845,-81.514
    6134 
    6135 > ui mousemode right "translate selected models"
    6136 
    6137 > view matrix models
    6138 > #16,-0.91363,-0.21533,0.34485,317.84,0.29373,-0.93605,0.19371,249.2,0.28108,0.27827,0.91845,-106.01
    6139 
    6140 > ui mousemode right "rotate selected models"
    6141 
    6142 > view matrix models
    6143 > #16,-0.9806,-0.19584,-0.008607,402.83,0.19207,-0.96862,0.15777,278.13,-0.039235,0.15305,0.98744,-51.292
    6144 
    6145 > ui mousemode right "translate selected models"
    6146 
    6147 > view matrix models
    6148 > #16,-0.9806,-0.19584,-0.008607,394.91,0.19207,-0.96862,0.15777,280.19,-0.039235,0.15305,0.98744,-78.494
    6149 
    6150 > view matrix models
    6151 > #16,-0.9806,-0.19584,-0.008607,396.7,0.19207,-0.96862,0.15777,289.21,-0.039235,0.15305,0.98744,-78.024
    6152 
    6153 > fitmap #16 inMap #6
    6154 
    6155 Fit molecule copy of copy of copy of copy of copy of copy of
    6156 Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6157 using 2086 atoms 
    6158 average map value = 0.0152, steps = 116 
    6159 shifted from previous position = 3.93 
    6160 rotated from previous position = 10.4 degrees 
    6161 atoms outside contour = 1419, contour level = 0.023968 
    6162  
    6163 Position of copy of copy of copy of copy of copy of copy of
    6164 Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6165 (#6) coordinates: 
    6166 Matrix rotation and translation 
    6167 -0.96014162 -0.27951260 0.00088378 403.88514624 
    6168 0.27951159 -0.96014168 -0.00110890 303.72978376 
    6169 0.00115851 -0.00081767 0.99999899 -64.31605291 
    6170 Axis 0.00052095 -0.00049144 0.99999974 
    6171 Axis point 180.30595610 180.64807057 0.00000000 
    6172 Rotation angle (degrees) 163.76890846 
    6173 Shift along axis -64.25489461 
    6174  
    6175 
    6176 > view matrix models
    6177 > #16,-0.96014,-0.27951,0.00088378,403.82,0.27951,-0.96014,-0.0011089,303.81,0.0011585,-0.00081767,1,-64.071
    6178 
    6179 > fitmap #16 inMap #6
    6180 
    6181 Fit molecule copy of copy of copy of copy of copy of copy of
    6182 Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6183 using 2086 atoms 
    6184 average map value = 0.0152, steps = 48 
    6185 shifted from previous position = 0.266 
    6186 rotated from previous position = 0.0786 degrees 
    6187 atoms outside contour = 1419, contour level = 0.023968 
    6188  
    6189 Position of copy of copy of copy of copy of copy of copy of
    6190 Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6191 (#6) coordinates: 
    6192 Matrix rotation and translation 
    6193 -0.95977662 -0.28076197 0.00124515 403.93731937 
    6194 0.28076031 -0.95977696 -0.00135283 303.52816064 
    6195 0.00157489 -0.00094883 0.99999831 -64.36250684 
    6196 Axis 0.00071948 -0.00058722 0.99999957 
    6197 Axis point 180.25251203 180.68289916 0.00000000 
    6198 Rotation angle (degrees) 163.69435554 
    6199 Shift along axis -64.25009405 
    6200  
    6201 
    6202 > fitmap #16 inMap #6
    6203 
    6204 Fit molecule copy of copy of copy of copy of copy of copy of
    6205 Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6206 using 2086 atoms 
    6207 average map value = 0.0152, steps = 28 
    6208 shifted from previous position = 0.0194 
    6209 rotated from previous position = 0.00608 degrees 
    6210 atoms outside contour = 1419, contour level = 0.023968 
    6211  
    6212 Position of copy of copy of copy of copy of copy of copy of
    6213 Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6214 (#6) coordinates: 
    6215 Matrix rotation and translation 
    6216 -0.95978776 -0.28072349 0.00133543 403.91109823 
    6217 0.28072182 -0.95978828 -0.00131394 303.51534759 
    6218 0.00165058 -0.00088622 0.99999825 -64.36907458 
    6219 Axis 0.00076182 -0.00056132 0.99999955 
    6220 Axis point 180.24466850 180.67150808 0.00000000 
    6221 Rotation angle (degrees) 163.69665282 
    6222 Shift along axis -64.23170913 
    6223  
    6224 
    6225 > fitmap #16 inMap #6
    6226 
    6227 Fit molecule copy of copy of copy of copy of copy of copy of
    6228 Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6229 using 2086 atoms 
    6230 average map value = 0.0152, steps = 28 
    6231 shifted from previous position = 0.0203 
    6232 rotated from previous position = 0.00986 degrees 
    6233 atoms outside contour = 1418, contour level = 0.023968 
    6234  
    6235 Position of copy of copy of copy of copy of copy of copy of
    6236 Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6237 (#6) coordinates: 
    6238 Matrix rotation and translation 
    6239 -0.95975851 -0.28082408 0.00120087 403.94688821 
    6240 0.28082249 -0.95975879 -0.00133680 303.51357364 
    6241 0.00152795 -0.00094577 0.99999839 -64.35569603 
    6242 Axis 0.00069621 -0.00058236 0.99999959 
    6243 Axis point 180.25255541 180.68301526 0.00000000 
    6244 Rotation angle (degrees) 163.69064597 
    6245 Shift along axis -64.25119112 
    6246  
    6247 
    6248 > fitmap #16 inMap #6
    6249 
    6250 Fit molecule copy of copy of copy of copy of copy of copy of
    6251 Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6252 using 2086 atoms 
    6253 average map value = 0.0152, steps = 28 
    6254 shifted from previous position = 0.0144 
    6255 rotated from previous position = 0.0312 degrees 
    6256 atoms outside contour = 1421, contour level = 0.023968 
    6257  
    6258 Position of copy of copy of copy of copy of copy of copy of
    6259 Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6260 (#6) coordinates: 
    6261 Matrix rotation and translation 
    6262 -0.95990963 -0.28030709 0.00119824 403.90363060 
    6263 0.28030561 -0.95990998 -0.00126205 303.59524710 
    6264 0.00150397 -0.00087558 0.99999849 -64.35377038 
    6265 Axis 0.00068937 -0.00054534 0.99999961 
    6266 Axis point 180.26639409 180.66640782 0.00000000 
    6267 Rotation angle (degrees) 163.72150413 
    6268 Shift along axis -64.24086895 
    6269  
    6270 
    6271 > fitmap #16 inMap #6
    6272 
    6273 Fit molecule copy of copy of copy of copy of copy of copy of
    6274 Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6275 using 2086 atoms 
    6276 average map value = 0.0152, steps = 28 
    6277 shifted from previous position = 0.0181 
    6278 rotated from previous position = 0.057 degrees 
    6279 atoms outside contour = 1417, contour level = 0.023968 
    6280  
    6281 Position of copy of copy of copy of copy of copy of copy of
    6282 Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6283 (#6) coordinates: 
    6284 Matrix rotation and translation 
    6285 -0.95963906 -0.28123105 0.00140583 403.94264965 
    6286 0.28122916 -0.95963961 -0.00140663 303.45288385 
    6287 0.00174468 -0.00095449 0.99999802 -64.38291180 
    6288 Axis 0.00080385 -0.00060244 0.99999950 
    6289 Axis point 180.22553100 180.69590675 0.00000000 
    6290 Rotation angle (degrees) 163.66635664 
    6291 Shift along axis -64.24098226 
    6292  
    6293 
    6294 > fitmap #16 inMap #6
    6295 
    6296 Fit molecule copy of copy of copy of copy of copy of copy of
    6297 Rhom_Model_Trimmed.pdb (#16) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6298 using 2086 atoms 
    6299 average map value = 0.0152, steps = 28 
    6300 shifted from previous position = 0.0174 
    6301 rotated from previous position = 0.0513 degrees 
    6302 atoms outside contour = 1419, contour level = 0.023968 
    6303  
    6304 Position of copy of copy of copy of copy of copy of copy of
    6305 Rhom_Model_Trimmed.pdb (#16) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6306 (#6) coordinates: 
    6307 Matrix rotation and translation 
    6308 -0.95988526 -0.28039010 0.00129420 403.89077782 
    6309 0.28038855 -0.95988576 -0.00125867 303.57766700 
    6310 0.00159520 -0.00084530 0.99999837 -64.37299633 
    6311 Axis 0.00073713 -0.00053676 0.99999958 
    6312 Axis point 180.25603382 180.66609888 0.00000000 
    6313 Rotation angle (degrees) 163.71655075 
    6314 Shift along axis -64.23819559 
    6315  
    6316 
    6317 > combine #15 #17
    6318 
    6319 > color #17 #b256fbff
    6320 
    6321 > color #17 #a14dfbff
    6322 
    6323 > select subtract #16
    6324 
    6325 Nothing selected 
    6326 
    6327 > select add #17
    6328 
    6329 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    6330 
    6331 > view matrix models
    6332 > #17,-0.95846,-0.28521,0.00089103,398.14,0.28521,-0.95846,-0.0016145,313.64,0.0013145,-0.0012933,1,-35.933
    6333 
    6334 > view matrix models
    6335 > #17,-0.95846,-0.28521,0.00089103,396.8,0.28521,-0.95846,-0.0016145,313.75,0.0013145,-0.0012933,1,-35.078
    6336 
    6337 > fitmap #17 inMap #6
    6338 
    6339 Fit molecule copy of copy of copy of copy of copy of copy of
    6340 Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6341 using 2086 atoms 
    6342 average map value = 0.005992, steps = 108 
    6343 shifted from previous position = 4.06 
    6344 rotated from previous position = 4.23 degrees 
    6345 atoms outside contour = 1876, contour level = 0.023968 
    6346  
    6347 Position of copy of copy of copy of copy of copy of copy of
    6348 Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6349 (#6) coordinates: 
    6350 Matrix rotation and translation 
    6351 -0.96679023 -0.25517376 0.01424798 388.78971905 
    6352 0.25555796 -0.96466858 0.06406768 303.16171060 
    6353 -0.00260381 0.06558119 0.99784384 -46.60140759 
    6354 Axis 0.00296179 0.03297730 0.99945171 
    6355 Axis point 174.68546574 177.62398175 0.00000000 
    6356 Rotation angle (degrees) 165.19643286 
    6357 Shift along axis -35.42688715 
    6358  
    6359 
    6360 > ui mousemode right "rotate selected models"
    6361 
    6362 > view matrix models
    6363 > #17,-0.98526,-0.1443,0.091833,357.96,0.14256,-0.98946,-0.025225,344.38,0.094505,-0.011762,0.99545,-49.776
    6364 
    6365 > view matrix models
    6366 > #17,-0.99874,-0.045578,-0.021185,369.86,0.045361,-0.99891,0.010599,353.41,-0.021645,0.0096242,0.99972,-35.514
    6367 
    6368 > ui mousemode right "translate selected models"
    6369 
    6370 > view matrix models
    6371 > #17,-0.99874,-0.045578,-0.021185,369.11,0.045361,-0.99891,0.010599,358.89,-0.021645,0.0096242,0.99972,-38.81
    6372 
    6373 > view matrix models
    6374 > #17,-0.99874,-0.045578,-0.021185,368.27,0.045361,-0.99891,0.010599,355.3,-0.021645,0.0096242,0.99972,-33.866
    6375 
    6376 > ui mousemode right "rotate selected models"
    6377 
    6378 > view matrix models
    6379 > #17,-0.99495,0.094482,-0.03375,349.21,-0.09579,-0.99462,0.039495,370.73,-0.029837,0.042528,0.99865,-37.316
    6380 
    6381 > ui mousemode right "translate selected models"
    6382 
    6383 > view matrix models
    6384 > #17,-0.99495,0.094482,-0.03375,350.3,-0.09579,-0.99462,0.039495,369.75,-0.029837,0.042528,0.99865,-37.34
    6385 
    6386 > fitmap #17 inMap #6
    6387 
    6388 Fit molecule copy of copy of copy of copy of copy of copy of
    6389 Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6390 using 2086 atoms 
    6391 average map value = 0.006749, steps = 652 
    6392 shifted from previous position = 1.97 
    6393 rotated from previous position = 4.79 degrees 
    6394 atoms outside contour = 1853, contour level = 0.023968 
    6395  
    6396 Position of copy of copy of copy of copy of copy of copy of
    6397 Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6398 (#6) coordinates: 
    6399 Matrix rotation and translation 
    6400 -0.98317007 0.17056528 -0.06545307 342.31288805 
    6401 -0.17266838 -0.98458468 0.02790420 383.94210846 
    6402 -0.05968461 0.03873625 0.99746541 -32.46969552 
    6403 Axis 0.03153867 -0.01679551 -0.99936141 
    6404 Axis point 187.28805738 177.47864542 0.00000000 
    6405 Rotation angle (degrees) 170.11178379 
    6406 Shift along axis 36.79655112 
    6407  
    6408 
    6409 > fitmap #17 inMap #6
    6410 
    6411 Fit molecule copy of copy of copy of copy of copy of copy of
    6412 Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6413 using 2086 atoms 
    6414 average map value = 0.006751, steps = 48 
    6415 shifted from previous position = 0.0291 
    6416 rotated from previous position = 0.279 degrees 
    6417 atoms outside contour = 1852, contour level = 0.023968 
    6418  
    6419 Position of copy of copy of copy of copy of copy of copy of
    6420 Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6421 (#6) coordinates: 
    6422 Matrix rotation and translation 
    6423 -0.98227737 0.17517417 -0.06667210 341.71401636 
    6424 -0.17734390 -0.98374759 0.02810364 384.51666718 
    6425 -0.06066548 0.03942946 0.99737907 -32.40661552 
    6426 Axis 0.03210711 -0.01702791 -0.99933937 
    6427 Axis point 187.46437981 177.39040330 0.00000000 
    6428 Rotation angle (degrees) 169.84128309 
    6429 Shift along axis 36.80914252 
    6430  
    6431 
    6432 > fitmap #17 inMap #6
    6433 
    6434 Fit molecule copy of copy of copy of copy of copy of copy of
    6435 Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6436 using 2086 atoms 
    6437 average map value = 0.006751, steps = 64 
    6438 shifted from previous position = 0.0165 
    6439 rotated from previous position = 0.111 degrees 
    6440 atoms outside contour = 1856, contour level = 0.023968 
    6441  
    6442 Position of copy of copy of copy of copy of copy of copy of
    6443 Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6444 (#6) coordinates: 
    6445 Matrix rotation and translation 
    6446 -0.98191283 0.17698535 -0.06725613 341.50318812 
    6447 -0.17917028 -0.98342158 0.02792874 384.80424008 
    6448 -0.06119815 0.03947388 0.99734477 -32.31322422 
    6449 Axis 0.03239432 -0.01699797 -0.99933061 
    6450 Axis point 187.54859987 177.38380172 0.00000000 
    6451 Rotation angle (degrees) 169.73523660 
    6452 Shift along axis 36.81346655 
    6453  
    6454 
    6455 > fitmap #17 inMap #6
    6456 
    6457 Fit molecule copy of copy of copy of copy of copy of copy of
    6458 Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6459 using 2086 atoms 
    6460 average map value = 0.006751, steps = 84 
    6461 shifted from previous position = 0.00841 
    6462 rotated from previous position = 0.0217 degrees 
    6463 atoms outside contour = 1853, contour level = 0.023968 
    6464  
    6465 Position of copy of copy of copy of copy of copy of copy of
    6466 Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6467 (#6) coordinates: 
    6468 Matrix rotation and translation 
    6469 -0.98184784 0.17728811 -0.06740735 341.47793294 
    6470 -0.17946863 -0.98337217 0.02775214 384.88231097 
    6471 -0.06136639 0.03934588 0.99733950 -32.25844582 
    6472 Axis 0.03247582 -0.01692164 -0.99932926 
    6473 Axis point 187.56868972 177.39613804 0.00000000 
    6474 Rotation angle (degrees) 169.71770967 
    6475 Shift along axis 36.81374321 
    6476  
    6477 
    6478 > ui mousemode right "rotate selected models"
    6479 
    6480 > view matrix models
    6481 > #17,-0.97598,0.18839,-0.10939,348.05,-0.19353,-0.98034,0.038356,384.34,-0.10001,0.058605,0.99326,-28.15
    6482 
    6483 > view matrix models
    6484 > #17,-0.95163,0.30458,-0.040366,311.49,-0.3072,-0.9455,0.10794,381.88,-0.0052891,0.11512,0.99334,-51.761
    6485 
    6486 > ui mousemode right "translate selected models"
    6487 
    6488 > view matrix models
    6489 > #17,-0.95163,0.30458,-0.040366,307.93,-0.3072,-0.9455,0.10794,384.99,-0.0052891,0.11512,0.99334,-52.612
    6490 
    6491 > fitmap #17 inMap #6
    6492 
    6493 Fit molecule copy of copy of copy of copy of copy of copy of
    6494 Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6495 using 2086 atoms 
    6496 average map value = 0.01537, steps = 96 
    6497 shifted from previous position = 2.48 
    6498 rotated from previous position = 6.91 degrees 
    6499 atoms outside contour = 1419, contour level = 0.023968 
    6500  
    6501 Position of copy of copy of copy of copy of copy of copy of
    6502 Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6503 (#6) coordinates: 
    6504 Matrix rotation and translation 
    6505 -0.95979572 0.28069442 0.00167698 302.48667202 
    6506 -0.28069684 -0.95979539 -0.00144350 404.76338262 
    6507 0.00120438 -0.00185619 0.99999755 -35.98402697 
    6508 Axis -0.00073512 0.00084184 -0.99999938 
    6509 Axis point 180.24092538 180.70250217 0.00000000 
    6510 Rotation angle (degrees) 163.69826313 
    6511 Shift along axis 36.10238860 
    6512  
    6513 
    6514 > fitmap #17 inMap #6
    6515 
    6516 Fit molecule copy of copy of copy of copy of copy of copy of
    6517 Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6518 using 2086 atoms 
    6519 average map value = 0.01537, steps = 28 
    6520 shifted from previous position = 0.0142 
    6521 rotated from previous position = 0.0661 degrees 
    6522 atoms outside contour = 1420, contour level = 0.023968 
    6523  
    6524 Position of copy of copy of copy of copy of copy of copy of
    6525 Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6526 (#6) coordinates: 
    6527 Matrix rotation and translation 
    6528 -0.96010528 0.27963170 0.00198984 302.62231197 
    6529 -0.27963460 -0.96010553 -0.00136309 404.61602173 
    6530 0.00152930 -0.00186513 0.99999709 -36.04241406 
    6531 Axis -0.00089769 0.00082348 -0.99999926 
    6532 Axis point 180.18696111 180.70444471 0.00000000 
    6533 Rotation angle (degrees) 163.76167624 
    6534 Shift along axis 36.10391950 
    6535  
    6536 
    6537 > fitmap #17 inMap #6
    6538 
    6539 Fit molecule copy of copy of copy of copy of copy of copy of
    6540 Rhom_Model_Trimmed.pdb (#17) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6541 using 2086 atoms 
    6542 average map value = 0.01537, steps = 36 
    6543 shifted from previous position = 0.00627 
    6544 rotated from previous position = 0.0274 degrees 
    6545 atoms outside contour = 1419, contour level = 0.023968 
    6546  
    6547 Position of copy of copy of copy of copy of copy of copy of
    6548 Rhom_Model_Trimmed.pdb (#17) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6549 (#6) coordinates: 
    6550 Matrix rotation and translation 
    6551 -0.95998625 0.28004152 0.00177534 302.59039065 
    6552 -0.28004401 -0.95998621 -0.00135030 404.66542705 
    6553 0.00132616 -0.00179344 0.99999751 -36.02235022 
    6554 Axis -0.00079120 0.00080198 -0.99999937 
    6555 Axis point 180.21668663 180.69916192 0.00000000 
    6556 Rotation angle (degrees) 163.73723229 
    6557 Shift along axis 36.10745122 
    6558  
    6559 
    6560 > combine #17 #18
    6561 
    6562 > color #18 #f89cfcff
    6563 
    6564 > select subtract #17
    6565 
    6566 Nothing selected 
    6567 
    6568 > select add #18
    6569 
    6570 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    6571 
    6572 > view matrix models
    6573 > #18,-0.95999,0.28004,0.0017753,302.47,-0.28004,-0.95999,-0.0013503,404.14,0.0013262,-0.0017934,1,-52.871
    6574 
    6575 > view matrix models
    6576 > #18,-0.95999,0.28004,0.0017753,303.11,-0.28004,-0.95999,-0.0013503,403.95,0.0013262,-0.0017934,1,-80.175
    6577 
    6578 > view matrix models
    6579 > #18,-0.95999,0.28004,0.0017753,302.66,-0.28004,-0.95999,-0.0013503,403.75,0.0013262,-0.0017934,1,-83.585
    6580 
    6581 > fitmap #18 inMap #6
    6582 
    6583 Fit molecule copy of copy of copy of copy of copy of copy of copy of
    6584 Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6585 using 2086 atoms 
    6586 average map value = 0.009588, steps = 108 
    6587 shifted from previous position = 1.1 
    6588 rotated from previous position = 5.96 degrees 
    6589 atoms outside contour = 1707, contour level = 0.023968 
    6590  
    6591 Position of copy of copy of copy of copy of copy of copy of copy of
    6592 Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6593 (#6) coordinates: 
    6594 Matrix rotation and translation 
    6595 -0.98260076 0.18313635 0.03093250 314.89256854 
    6596 -0.18310176 -0.98308595 0.00397123 390.92623224 
    6597 0.03113659 -0.00176167 0.99951359 -87.13894575 
    6598 Axis -0.01565154 -0.00055717 -0.99987735 
    6599 Axis point 176.18398169 180.88591364 0.00000000 
    6600 Rotation angle (degrees) 169.44720209 
    6601 Shift along axis 81.98189403 
    6602  
    6603 
    6604 > view matrix models
    6605 > #18,-0.9826,0.18314,0.030933,316.25,-0.1831,-0.98309,0.0039712,391.04,0.031137,-0.0017617,0.99951,-90.397
    6606 
    6607 > view matrix models
    6608 > #18,-0.9826,0.18314,0.030933,315.52,-0.1831,-0.98309,0.0039712,390.51,0.031137,-0.0017617,0.99951,-92.675
    6609 
    6610 > fitmap #18 inMap #6
    6611 
    6612 Fit molecule copy of copy of copy of copy of copy of copy of copy of
    6613 Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6614 using 2086 atoms 
    6615 average map value = 0.01498, steps = 68 
    6616 shifted from previous position = 1.85 
    6617 rotated from previous position = 5.92 degrees 
    6618 atoms outside contour = 1452, contour level = 0.023968 
    6619  
    6620 Position of copy of copy of copy of copy of copy of copy of copy of
    6621 Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6622 (#6) coordinates: 
    6623 Matrix rotation and translation 
    6624 -0.96006704 0.27975335 0.00305640 302.17394892 
    6625 -0.27975767 -0.96007003 -0.00108530 404.63887625 
    6626 0.00263074 -0.00189701 0.99999474 -87.89062940 
    6627 Axis -0.00145075 0.00076077 -0.99999866 
    6628 Axis point 180.02253215 180.71263841 0.00000000 
    6629 Rotation angle (degrees) 163.75436435 
    6630 Shift along axis 87.75996725 
    6631  
    6632 
    6633 > fitmap #18 inMap #6
    6634 
    6635 Fit molecule copy of copy of copy of copy of copy of copy of copy of
    6636 Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6637 using 2086 atoms 
    6638 average map value = 0.01498, steps = 28 
    6639 shifted from previous position = 0.0189 
    6640 rotated from previous position = 0.153 degrees 
    6641 atoms outside contour = 1455, contour level = 0.023968 
    6642  
    6643 Position of copy of copy of copy of copy of copy of copy of copy of
    6644 Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6645 (#6) coordinates: 
    6646 Matrix rotation and translation 
    6647 -0.95935934 0.28217878 0.00218860 301.90040301 
    6648 -0.28218163 -0.95936035 -0.00111959 404.91911070 
    6649 0.00178373 -0.00169167 0.99999698 -87.78020510 
    6650 Axis -0.00101368 0.00071739 -0.99999923 
    6651 Axis point 180.14770342 180.68232169 0.00000000 
    6652 Rotation angle (degrees) 163.60961758 
    6653 Shift along axis 87.76459278 
    6654  
    6655 
    6656 > fitmap #18 inMap #6
    6657 
    6658 Fit molecule copy of copy of copy of copy of copy of copy of copy of
    6659 Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6660 using 2086 atoms 
    6661 average map value = 0.01498, steps = 28 
    6662 shifted from previous position = 0.0179 
    6663 rotated from previous position = 0.0741 degrees 
    6664 atoms outside contour = 1454, contour level = 0.023968 
    6665  
    6666 Position of copy of copy of copy of copy of copy of copy of copy of
    6667 Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6668 (#6) coordinates: 
    6669 Matrix rotation and translation 
    6670 -0.95970501 0.28099757 0.00258027 302.03445423 
    6671 -0.28100128 -0.95970664 -0.00120286 404.79400149 
    6672 0.00213830 -0.00187945 0.99999595 -87.81458440 
    6673 Axis -0.00120390 0.00078642 -0.99999897 
    6674 Axis point 180.08658606 180.70072811 0.00000000 
    6675 Rotation angle (degrees) 163.68012002 
    6676 Shift along axis 87.76921309 
    6677  
    6678 
    6679 > fitmap #18 inMap #6
    6680 
    6681 Fit molecule copy of copy of copy of copy of copy of copy of copy of
    6682 Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6683 using 2086 atoms 
    6684 average map value = 0.01498, steps = 36 
    6685 shifted from previous position = 0.0111 
    6686 rotated from previous position = 0.0301 degrees 
    6687 atoms outside contour = 1455, contour level = 0.023968 
    6688  
    6689 Position of copy of copy of copy of copy of copy of copy of copy of
    6690 Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6691 (#6) coordinates: 
    6692 Matrix rotation and translation 
    6693 -0.95957839 0.28143191 0.00232310 302.00239655 
    6694 -0.28143500 -0.95957963 -0.00112902 404.83751277 
    6695 0.00191146 -0.00173718 0.99999666 -87.79533087 
    6696 Axis -0.00108048 0.00073133 -0.99999915 
    6697 Axis point 180.11529372 180.69313129 0.00000000 
    6698 Rotation angle (degrees) 163.65420924 
    6699 Shift along axis 87.76501979 
    6700  
    6701 
    6702 > fitmap #18 inMap #6
    6703 
    6704 Fit molecule copy of copy of copy of copy of copy of copy of copy of
    6705 Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6706 using 2086 atoms 
    6707 average map value = 0.01498, steps = 28 
    6708 shifted from previous position = 0.0179 
    6709 rotated from previous position = 0.0129 degrees 
    6710 atoms outside contour = 1455, contour level = 0.023968 
    6711  
    6712 Position of copy of copy of copy of copy of copy of copy of copy of
    6713 Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6714 (#6) coordinates: 
    6715 Matrix rotation and translation 
    6716 -0.95951997 0.28163033 0.00240457 301.96315448 
    6717 -0.28163364 -0.95952131 -0.00116460 404.87350755 
    6718 0.00197925 -0.00179467 0.99999643 -87.79995418 
    6719 Axis -0.00111859 0.00075510 -0.99999909 
    6720 Axis point 180.12115750 180.69671193 0.00000000 
    6721 Rotation angle (degrees) 163.64235391 
    6722 Shift along axis 87.76782011 
    6723  
    6724 
    6725 > fitmap #18 inMap #6
    6726 
    6727 Fit molecule copy of copy of copy of copy of copy of copy of copy of
    6728 Rhom_Model_Trimmed.pdb (#18) to map Rhom_Flagella_Map_2RingMasked.mrc (#6)
    6729 using 2086 atoms 
    6730 average map value = 0.01498, steps = 28 
    6731 shifted from previous position = 0.0121 
    6732 rotated from previous position = 0.0264 degrees 
    6733 atoms outside contour = 1453, contour level = 0.023968 
    6734  
    6735 Position of copy of copy of copy of copy of copy of copy of copy of
    6736 Rhom_Model_Trimmed.pdb (#18) relative to Rhom_Flagella_Map_2RingMasked.mrc
    6737 (#6) coordinates: 
    6738 Matrix rotation and translation 
    6739 -0.95964411 0.28120588 0.00253592 302.00777732 
    6740 -0.28120940 -0.95964574 -0.00115208 404.81680250 
    6741 0.00210961 -0.00181871 0.99999612 -87.81645642 
    6742 Axis -0.00118530 0.00075799 -0.99999901 
    6743 Axis point 180.09664874 180.69868429 0.00000000 
    6744 Rotation angle (degrees) 163.66768984 
    6745 Shift along axis 87.76524729 
    6746  
    6747 
    6748 > select subtract #18
    6749 
    6750 Nothing selected 
    6751 
    6752 > select add #1
    6753 
    6754 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    6755 
    6756 > select subtract #1
    6757 
    6758 Nothing selected 
    6759 
    6760 > combine #1 #19
    6761 
    6762 > color #19 #ff515aff
    6763 
    6764 > select add #19
    6765 
    6766 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    6767 
    6768 > view matrix models
    6769 > #19,0.84113,0.54083,0.0010819,-69.478,-0.54083,0.84113,0.0017252,132.27,2.3041e-05,-0.0020362,1,-45.791
    6770 
    6771 > view matrix models
    6772 > #19,0.84113,0.54083,0.0010819,-56.855,-0.54083,0.84113,0.0017252,118.92,2.3041e-05,-0.0020362,1,-76.108
    6773 
    6774 > view matrix models
    6775 > #19,0.84113,0.54083,0.0010819,-73.149,-0.54083,0.84113,0.0017252,124.68,2.3041e-05,-0.0020362,1,-78.215
    6776 
    6777 > fitmap #19 inMap #6
    6778 
    6779 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
    6780 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6781 average map value = 0.01493, steps = 68 
    6782 shifted from previous position = 4.22 
    6783 rotated from previous position = 0.197 degrees 
    6784 atoms outside contour = 1440, contour level = 0.023968 
    6785  
    6786 Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
    6787 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6788 Matrix rotation and translation 
    6789 0.84290760 0.53805832 0.00014983 -68.70434699 
    6790 -0.53805746 0.84290569 0.00203996 124.81781469 
    6791 0.00097133 -0.00180011 0.99999791 -78.24022914 
    6792 Axis -0.00356843 -0.00076339 -0.99999334 
    6793 Axis point 179.64706304 179.61957650 0.00000000 
    6794 Rotation angle (degrees) 32.55177229 
    6795 Shift along axis 78.38959020 
    6796  
    6797 
    6798 > view matrix models
    6799 > #19,0.84291,0.53806,0.00014983,-69.624,-0.53806,0.84291,0.00204,124.52,0.00097133,-0.0018001,1,-78.06
    6800 
    6801 > fitmap #19 inMap #6
    6802 
    6803 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
    6804 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6805 average map value = 0.01493, steps = 44 
    6806 shifted from previous position = 0.975 
    6807 rotated from previous position = 0.0144 degrees 
    6808 atoms outside contour = 1443, contour level = 0.023968 
    6809  
    6810 Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
    6811 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6812 Matrix rotation and translation 
    6813 0.84279749 0.53823078 0.00014335 -68.71788474 
    6814 -0.53823005 0.84279584 0.00189354 124.88856829 
    6815 0.00089835 -0.00167302 0.99999820 -78.24794745 
    6816 Axis -0.00331321 -0.00070137 -0.99999427 
    6817 Axis point 179.66183027 179.66542366 0.00000000 
    6818 Rotation angle (degrees) 32.56346629 
    6819 Shift along axis 78.38758208 
    6820  
    6821 
    6822 > fitmap #19 inMap #6
    6823 
    6824 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
    6825 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6826 average map value = 0.01493, steps = 28 
    6827 shifted from previous position = 0.0119 
    6828 rotated from previous position = 0.0294 degrees 
    6829 atoms outside contour = 1442, contour level = 0.023968 
    6830  
    6831 Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
    6832 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6833 Matrix rotation and translation 
    6834 0.84307017 0.53780354 0.00019184 -68.71749268 
    6835 -0.53780295 0.84306859 0.00182732 124.79498929 
    6836 0.00082100 -0.00164373 0.99999831 -78.23418251 
    6837 Axis -0.00322705 -0.00058493 -0.99999462 
    6838 Axis point 179.68421515 179.73544971 0.00000000 
    6839 Rotation angle (degrees) 32.53441758 
    6840 Shift along axis 78.38251978 
    6841  
    6842 
    6843 > fitmap #19 inMap #6
    6844 
    6845 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
    6846 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6847 average map value = 0.01493, steps = 28 
    6848 shifted from previous position = 0.0182 
    6849 rotated from previous position = 0.0622 degrees 
    6850 atoms outside contour = 1444, contour level = 0.023968 
    6851  
    6852 Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
    6853 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6854 Matrix rotation and translation 
    6855 0.84251285 0.53867625 0.00006436 -68.72124912 
    6856 -0.53867514 0.84251086 0.00213009 124.94637251 
    6857 0.00109320 -0.00182930 0.99999773 -78.26197015 
    6858 Axis -0.00367508 -0.00095496 -0.99999279 
    6859 Axis point 179.59733213 179.54646316 0.00000000 
    6860 Rotation angle (degrees) 32.59379727 
    6861 Shift along axis 78.39464308 
    6862  
    6863 
    6864 > fitmap #19 inMap #6
    6865 
    6866 Fit molecule copy of copy of Rhom_Model_Trimmed.pdb (#19) to map
    6867 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6868 average map value = 0.01493, steps = 36 
    6869 shifted from previous position = 0.0175 
    6870 rotated from previous position = 0.045 degrees 
    6871 atoms outside contour = 1441, contour level = 0.023968 
    6872  
    6873 Position of copy of copy of Rhom_Model_Trimmed.pdb (#19) relative to
    6874 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6875 Matrix rotation and translation 
    6876 0.84291369 0.53804878 0.00014293 -68.70910483 
    6877 -0.53804805 0.84291205 0.00189059 124.84892691 
    6878 0.00089675 -0.00167051 0.99999820 -78.24099585 
    6879 Axis -0.00330925 -0.00070052 -0.99999428 
    6880 Axis point 179.68388346 179.67813676 0.00000000 
    6881 Rotation angle (degrees) 32.55109377 
    6882 Shift along axis 78.38046539 
    6883  
    6884 
    6885 > combine #19 #20
    6886 
    6887 > color #20 #943e41ff
    6888 
    6889 > select subtract #19
    6890 
    6891 Nothing selected 
    6892 
    6893 > select add #20
    6894 
    6895 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    6896 
    6897 > view matrix models
    6898 > #20,0.84291,0.53805,0.00014293,-57.46,-0.53805,0.84291,0.0018906,136.84,0.00089675,-0.0016705,1,-8.813
    6899 
    6900 > view matrix models
    6901 > #20,0.84291,0.53805,0.00014293,-66.126,-0.53805,0.84291,0.0018906,141.82,0.00089675,-0.0016705,1,-7.0685
    6902 
    6903 > view matrix models
    6904 > #20,0.84291,0.53805,0.00014293,-68.284,-0.53805,0.84291,0.0018906,139.61,0.00089675,-0.0016705,1,-6.96
    6905 
    6906 > fitmap #20 inMap #6
    6907 
    6908 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
    6909 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6910 average map value = 0.006266, steps = 92 
    6911 shifted from previous position = 1.38 
    6912 rotated from previous position = 2.56 degrees 
    6913 atoms outside contour = 1884, contour level = 0.023968 
    6914  
    6915 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
    6916 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6917 Matrix rotation and translation 
    6918 0.83250637 0.55280306 0.03663220 -76.33949265 
    6919 -0.55258969 0.83328740 -0.01663546 145.91966021 
    6920 -0.03972128 -0.00639345 0.99919034 -0.08756619 
    6921 Axis 0.00924308 0.06890648 -0.99758030 
    6922 Axis point 202.65380769 199.65507560 0.00000000 
    6923 Rotation angle (degrees) 33.64440976 
    6924 Shift along axis 9.43655259 
    6925  
    6926 
    6927 > ui mousemode right "rotate selected models"
    6928 
    6929 > view matrix models
    6930 > #20,0.72893,0.64726,0.22299,-114.97,-0.63028,0.76165,-0.15048,198.38,-0.26724,-0.030862,0.96314,47.615
    6931 
    6932 > fitmap #20 inMap #6
    6933 
    6934 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
    6935 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6936 average map value = 0.005042, steps = 228 
    6937 shifted from previous position = 4.65 
    6938 rotated from previous position = 10.9 degrees 
    6939 atoms outside contour = 1904, contour level = 0.023968 
    6940  
    6941 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
    6942 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6943 Matrix rotation and translation 
    6944 0.82281317 0.53607132 0.18869558 -102.46482396 
    6945 -0.49212554 0.83814966 -0.23519692 182.92361266 
    6946 -0.28423746 0.10066121 0.95345497 35.81105929 
    6947 Axis 0.28449734 0.40061019 -0.87096081 
    6948 Axis point 267.02032981 286.26549674 0.00000000 
    6949 Rotation angle (degrees) 36.17587647 
    6950 Shift along axis 12.94006457 
    6951  
    6952 
    6953 > ui mousemode right "translate selected models"
    6954 
    6955 > view matrix models
    6956 > #20,0.82281,0.53607,0.1887,-103.24,-0.49213,0.83815,-0.2352,192.86,-0.28424,0.10066,0.95345,31.853
    6957 
    6958 > view matrix models
    6959 > #20,0.82281,0.53607,0.1887,-116.48,-0.49213,0.83815,-0.2352,200.64,-0.28424,0.10066,0.95345,37.104
    6960 
    6961 > view matrix models
    6962 > #20,0.82281,0.53607,0.1887,-116.82,-0.49213,0.83815,-0.2352,199.14,-0.28424,0.10066,0.95345,40.397
    6963 
    6964 > ui mousemode right "rotate selected models"
    6965 
    6966 > view matrix models
    6967 > #20,0.81475,0.57826,0.042398,-89.927,-0.56825,0.81089,-0.13985,194.5,-0.11525,0.089848,0.98926,7.3809
    6968 
    6969 > view matrix models
    6970 > #20,0.81897,0.56897,0.0746,-96.233,-0.55301,0.81725,-0.16209,195.98,-0.15319,0.09149,0.98395,14.316
    6971 
    6972 > view matrix models
    6973 > #20,0.69458,0.70714,0.13233,-110.05,-0.68641,0.70648,-0.17243,236.19,-0.21542,0.028937,0.97609,35.386
    6974 
    6975 > view matrix models
    6976 > #20,0.67865,0.73335,0.04039,-91.378,-0.72648,0.67835,-0.10985,233.12,-0.10795,0.045204,0.99313,12.14
    6977 
    6978 > ui mousemode right "translate selected models"
    6979 
    6980 > view matrix models
    6981 > #20,0.67865,0.73335,0.04039,-81.324,-0.72648,0.67835,-0.10985,226.79,-0.10795,0.045204,0.99313,11.318
    6982 
    6983 > view matrix models
    6984 > #20,0.67865,0.73335,0.04039,-83.011,-0.72648,0.67835,-0.10985,225.94,-0.10795,0.045204,0.99313,8.8636
    6985 
    6986 > fitmap #20 inMap #6
    6987 
    6988 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
    6989 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    6990 average map value = 0.01534, steps = 100 
    6991 shifted from previous position = 1.48 
    6992 rotated from previous position = 19.7 degrees 
    6993 atoms outside contour = 1412, contour level = 0.023968 
    6994  
    6995 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
    6996 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    6997 Matrix rotation and translation 
    6998 0.41286576 0.91079037 0.00166248 -58.78890893 
    6999 -0.91079180 0.41286422 0.00119944 269.91624126 
    7000 0.00040606 -0.00200938 0.99999790 -2.96822453 
    7001 Axis -0.00176156 0.00068974 -0.99999821 
    7002 Axis point 179.96009424 180.55076972 0.00000000 
    7003 Rotation angle (degrees) 65.61512939 
    7004 Shift along axis 3.25795140 
    7005  
    7006 
    7007 > fitmap #20 inMap #6
    7008 
    7009 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
    7010 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7011 average map value = 0.01533, steps = 28 
    7012 shifted from previous position = 0.0144 
    7013 rotated from previous position = 0.0725 degrees 
    7014 atoms outside contour = 1411, contour level = 0.023968 
    7015  
    7016 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
    7017 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7018 Matrix rotation and translation 
    7019 0.41185908 0.91124627 0.00152711 -58.67833545 
    7020 -0.91124699 0.41185640 0.00179787 270.01559355 
    7021 0.00100935 -0.00213205 0.99999722 -3.03336563 
    7022 Axis -0.00215633 0.00028410 -0.99999763 
    7023 Axis point 179.84014794 180.45912628 0.00000000 
    7024 Rotation angle (degrees) 65.67849874 
    7025 Shift along axis 3.23659935 
    7026  
    7027 
    7028 > fitmap #20 inMap #6
    7029 
    7030 Fit molecule copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) to map
    7031 Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7032 average map value = 0.01533, steps = 28 
    7033 shifted from previous position = 0.00668 
    7034 rotated from previous position = 0.0785 degrees 
    7035 atoms outside contour = 1410, contour level = 0.023968 
    7036  
    7037 Position of copy of copy of copy of Rhom_Model_Trimmed.pdb (#20) relative to
    7038 Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7039 Matrix rotation and translation 
    7040 0.41063566 0.91179849 0.00136454 -58.54003787 
    7041 -0.91179862 0.41063270 0.00201543 270.23932571 
    7042 0.00127734 -0.00207179 0.99999704 -3.08751641 
    7043 Axis -0.00224129 0.00004781 -0.99999749 
    7044 Axis point 179.77534539 180.39728451 0.00000000 
    7045 Rotation angle (degrees) 65.75541358 
    7046 Shift along axis 3.23163531 
    7047  
    7048 
    7049 > combine #20 #21
    7050 
    7051 > color #21 #f77c7eff
    7052 
    7053 > color #21 #f72d01ff
    7054 
    7055 > select subtract #20
    7056 
    7057 Nothing selected 
    7058 
    7059 > select add #21
    7060 
    7061 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    7062 
    7063 > view matrix models
    7064 > #21,0.41064,0.9118,0.0013645,-80.462,-0.9118,0.41063,0.0020154,262.57,0.0012773,-0.0020718,1,-39.346
    7065 
    7066 > view matrix models
    7067 > #21,0.41064,0.9118,0.0013645,-60.12,-0.9118,0.41063,0.0020154,272.47,0.0012773,-0.0020718,1,-54.035
    7068 
    7069 > view matrix models
    7070 > #21,0.41064,0.9118,0.0013645,-59.649,-0.9118,0.41063,0.0020154,270.71,0.0012773,-0.0020718,1,-55.403
    7071 
    7072 > fitmap #21 inMap #6
    7073 
    7074 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
    7075 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7076 average map value = 0.01522, steps = 60 
    7077 shifted from previous position = 1.43 
    7078 rotated from previous position = 0.247 degrees 
    7079 atoms outside contour = 1406, contour level = 0.023968 
    7080  
    7081 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
    7082 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7083 Matrix rotation and translation 
    7084 0.41440823 0.91009106 0.00028925 -58.67371223 
    7085 -0.91008841 0.41440620 0.00256542 269.08864546 
    7086 0.00221490 -0.00132638 0.99999667 -55.01498269 
    7087 Axis -0.00213814 -0.00105794 -0.99999715 
    7088 Axis point 179.86757467 180.07582187 0.00000000 
    7089 Rotation angle (degrees) 65.51811340 
    7090 Shift along axis 54.85559838 
    7091  
    7092 
    7093 > fitmap #21 inMap #6
    7094 
    7095 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
    7096 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7097 average map value = 0.01522, steps = 28 
    7098 shifted from previous position = 0.02 
    7099 rotated from previous position = 0.0322 degrees 
    7100 atoms outside contour = 1405, contour level = 0.023968 
    7101  
    7102 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
    7103 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7104 Matrix rotation and translation 
    7105 0.41391669 0.91031474 0.00021092 -58.60908503 
    7106 -0.91031169 0.41391468 0.00269643 269.15593274 
    7107 0.00236730 -0.00130810 0.99999634 -55.05569398 
    7108 Axis -0.00219952 -0.00118441 -0.99999688 
    7109 Axis point 179.83524327 180.03316147 0.00000000 
    7110 Rotation angle (degrees) 65.54906436 
    7111 Shift along axis 54.86564271 
    7112  
    7113 
    7114 > view matrix models
    7115 > #21,0.41392,0.91031,0.00021092,-58.505,-0.91031,0.41391,0.0026964,269.06,0.0023673,-0.0013081,1,-56.097
    7116 
    7117 > fitmap #21 inMap #6
    7118 
    7119 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
    7120 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7121 average map value = 0.01522, steps = 48 
    7122 shifted from previous position = 1.07 
    7123 rotated from previous position = 0.0365 degrees 
    7124 atoms outside contour = 1408, contour level = 0.023968 
    7125  
    7126 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
    7127 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7128 Matrix rotation and translation 
    7129 0.41436210 0.91011202 0.00041430 -58.69625321 
    7130 -0.91011000 0.41436011 0.00234418 269.14704524 
    7131 0.00196179 -0.00134840 0.99999717 -54.96948569 
    7132 Axis -0.00202863 -0.00085016 -0.99999758 
    7133 Axis point 179.87810100 180.11892413 0.00000000 
    7134 Rotation angle (degrees) 65.52100069 
    7135 Shift along axis 54.85960674 
    7136  
    7137 
    7138 > select subtract #21
    7139 
    7140 Nothing selected 
    7141 
    7142 > select add #21
    7143 
    7144 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    7145 
    7146 > fitmap #21 inMap #6
    7147 
    7148 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
    7149 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7150 average map value = 0.01522, steps = 28 
    7151 shifted from previous position = 0.0127 
    7152 rotated from previous position = 0.0435 degrees 
    7153 atoms outside contour = 1405, contour level = 0.023968 
    7154  
    7155 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
    7156 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7157 Matrix rotation and translation 
    7158 0.41377525 0.91037902 0.00028836 -58.61410977 
    7159 -0.91037600 0.41377302 0.00272524 269.18846291 
    7160 0.00236168 -0.00139016 0.99999625 -55.03544669 
    7161 Axis -0.00226026 -0.00113871 -0.99999680 
    7162 Axis point 179.82198409 180.04172204 0.00000000 
    7163 Rotation angle (degrees) 65.55797650 
    7164 Shift along axis 54.86122585 
    7165  
    7166 
    7167 > fitmap #21 inMap #6
    7168 
    7169 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
    7170 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7171 average map value = 0.01522, steps = 40 
    7172 shifted from previous position = 0.0116 
    7173 rotated from previous position = 0.045 degrees 
    7174 atoms outside contour = 1409, contour level = 0.023968 
    7175  
    7176 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
    7177 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7178 Matrix rotation and translation 
    7179 0.41442981 0.91008122 0.00032342 -58.68392253 
    7180 -0.91007894 0.41442792 0.00241262 269.11702083 
    7181 0.00206165 -0.00129420 0.99999704 -54.99444282 
    7182 Axis -0.00203653 -0.00095498 -0.99999747 
    7183 Axis point 179.88276401 180.10061651 0.00000000 
    7184 Rotation angle (degrees) 65.51673862 
    7185 Shift along axis 54.85681320 
    7186  
    7187 
    7188 > view matrix models
    7189 > #21,0.41443,0.91008,0.00032342,-58.398,-0.91008,0.41443,0.0024126,269.11,0.0020616,-0.0012942,1,-55.687
    7190 
    7191 > fitmap #21 inMap #6
    7192 
    7193 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
    7194 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7195 average map value = 0.01522, steps = 48 
    7196 shifted from previous position = 0.734 
    7197 rotated from previous position = 0.0105 degrees 
    7198 atoms outside contour = 1406, contour level = 0.023968 
    7199  
    7200 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
    7201 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7202 Matrix rotation and translation 
    7203 0.41430078 0.91013997 0.00031797 -58.66413112 
    7204 -0.91013792 0.41429904 0.00229561 269.15666777 
    7205 0.00195759 -0.00124046 0.99999731 -54.99987712 
    7206 Axis -0.00194259 -0.00090075 -0.99999771 
    7207 Axis point 179.88600798 180.10046695 0.00000000 
    7208 Rotation angle (degrees) 65.52484834 
    7209 Shift along axis 54.87126800 
    7210  
    7211 
    7212 > fitmap #21 inMap #6
    7213 
    7214 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
    7215 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7216 average map value = 0.01522, steps = 40 
    7217 shifted from previous position = 0.0218 
    7218 rotated from previous position = 0.0149 degrees 
    7219 atoms outside contour = 1409, contour level = 0.023968 
    7220  
    7221 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
    7222 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7223 Matrix rotation and translation 
    7224 0.41450734 0.91004591 0.00034228 -58.69459742 
    7225 -0.91004363 0.41450539 0.00242162 269.09790397 
    7226 0.00206191 -0.00131527 0.99999701 -54.98934297 
    7227 Axis -0.00205313 -0.00094480 -0.99999745 
    7228 Axis point 179.88216072 180.10262586 0.00000000 
    7229 Rotation angle (degrees) 65.51186034 
    7230 Shift along axis 54.85546645 
    7231  
    7232 
    7233 > fitmap #21 inMap #6
    7234 
    7235 Fit molecule copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21) to
    7236 map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7237 average map value = 0.01522, steps = 24 
    7238 shifted from previous position = 0.0027 
    7239 rotated from previous position = 0.0376 degrees 
    7240 atoms outside contour = 1408, contour level = 0.023968 
    7241  
    7242 Position of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb (#21)
    7243 relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7244 Matrix rotation and translation 
    7245 0.41392957 0.91030885 0.00032484 -58.63692698 
    7246 -0.91030620 0.41392745 0.00258601 269.19039233 
    7247 0.00221960 -0.00136613 0.99999660 -55.00523196 
    7248 Axis -0.00217076 -0.00104072 -0.99999710 
    7249 Axis point 179.84432584 180.06998006 0.00000000 
    7250 Rotation angle (degrees) 65.54824911 
    7251 Shift along axis 54.85220741 
    7252  
    7253 
    7254 > select clear
    7255 
    7256 > combine #21 #22
    7257 
    7258 > color #22 #fb4a86ff
    7259 
    7260 > color #22 #fb4589ff
    7261 
    7262 > color #22 #b3fbe3ff
    7263 
    7264 > color #22 #aafbf2ff
    7265 
    7266 > select add #22
    7267 
    7268 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    7269 
    7270 > view matrix models
    7271 > #22,0.41393,0.91031,0.00032484,-55.996,-0.91031,0.41393,0.002586,273.15,0.0022196,-0.0013661,1,-54.928
    7272 
    7273 > view matrix models
    7274 > #22,0.41393,0.91031,0.00032484,-43.8,-0.91031,0.41393,0.002586,292.49,0.0022196,-0.0013661,1,-73.255
    7275 
    7276 > ui mousemode right "move picked models"
    7277 
    7278 > ui mousemode right "rotate selected models"
    7279 
    7280 > view matrix models
    7281 > #22,-0.29313,0.95408,0.061695,48.362,-0.95573,-0.29414,0.0077305,405.82,0.025522,-0.056698,0.99807,-68.15
    7282 
    7283 > ui mousemode right "translate selected models"
    7284 
    7285 > view matrix models
    7286 > #22,-0.29313,0.95408,0.061695,45.432,-0.95573,-0.29414,0.0077305,398.3,0.025522,-0.056698,0.99807,-74.802
    7287 
    7288 > fitmap #22 inMap #6
    7289 
    7290 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7291 (#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7292 average map value = 0.009636, steps = 84 
    7293 shifted from previous position = 2.96 
    7294 rotated from previous position = 3.72 degrees 
    7295 atoms outside contour = 1697, contour level = 0.023968 
    7296  
    7297 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7298 (#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7299 Matrix rotation and translation 
    7300 -0.26259993 0.96482353 0.01252317 48.37511885 
    7301 -0.96414242 -0.26288617 0.03633517 391.13346313 
    7302 0.03834920 -0.00253250 0.99926119 -83.43836470 
    7303 Axis -0.02014359 -0.01338462 -0.99970750 
    7304 Axis point 174.84048636 177.05133539 0.00000000 
    7305 Rotation angle (degrees) 105.25482487 
    7306 Shift along axis 77.20433696 
    7307  
    7308 
    7309 > fitmap #22 inMap #6
    7310 
    7311 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7312 (#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7313 average map value = 0.009635, steps = 40 
    7314 shifted from previous position = 0.0124 
    7315 rotated from previous position = 0.0715 degrees 
    7316 atoms outside contour = 1695, contour level = 0.023968 
    7317  
    7318 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7319 (#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7320 Matrix rotation and translation 
    7321 -0.26149332 0.96512766 0.01224089 48.21278164 
    7322 -0.96446085 -0.26176862 0.03595091 391.09225577 
    7323 0.03790150 -0.00240494 0.99927859 -83.40154619 
    7324 Axis -0.01987205 -0.01329469 -0.99971414 
    7325 Axis point 174.90873055 177.07386933 0.00000000 
    7326 Rotation angle (degrees) 105.18827393 
    7327 Shift along axis 77.22016902 
    7328  
    7329 
    7330 > view matrix models
    7331 > #22,-0.26149,0.96513,0.012241,48.063,-0.96446,-0.26177,0.035951,391.35,0.037901,-0.0024049,0.99928,-87.186
    7332 
    7333 > view matrix models
    7334 > #22,-0.26149,0.96513,0.012241,48.095,-0.96446,-0.26177,0.035951,391.46,0.037901,-0.0024049,0.99928,-88.017
    7335 
    7336 > fitmap #22 inMap #6
    7337 
    7338 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7339 (#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7340 average map value = 0.01489, steps = 76 
    7341 shifted from previous position = 1.28 
    7342 rotated from previous position = 7.36 degrees 
    7343 atoms outside contour = 1452, contour level = 0.023968 
    7344  
    7345 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7346 (#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7347 Matrix rotation and translation 
    7348 -0.14111479 0.98999072 0.00223398 26.56036543 
    7349 -0.98999204 -0.14111778 0.00124148 384.15442893 
    7350 0.00154431 -0.00203643 0.99999673 -82.98481164 
    7351 Axis -0.00165552 0.00034832 -0.99999857 
    7352 Axis point 179.97583276 180.48167817 0.00000000 
    7353 Rotation angle (degrees) 98.11254026 
    7354 Shift along axis 83.07453073 
    7355  
    7356 
    7357 > fitmap #22 inMap #6
    7358 
    7359 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7360 (#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7361 average map value = 0.0149, steps = 28 
    7362 shifted from previous position = 0.0123 
    7363 rotated from previous position = 0.0376 degrees 
    7364 atoms outside contour = 1450, contour level = 0.023968 
    7365  
    7366 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7367 (#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7368 Matrix rotation and translation 
    7369 -0.14051441 0.99007627 0.00216195 26.47409123 
    7370 -0.99007778 -0.14051682 0.00100407 384.12014311 
    7371 0.00129790 -0.00199941 0.99999716 -82.95888874 
    7372 Axis -0.00151679 0.00043635 -0.99999875 
    7373 Axis point 180.01100973 180.49623071 0.00000000 
    7374 Rotation angle (degrees) 98.07776599 
    7375 Shift along axis 83.08624165 
    7376  
    7377 
    7378 > fitmap #22 inMap #6
    7379 
    7380 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7381 (#22) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7382 average map value = 0.0149, steps = 28 
    7383 shifted from previous position = 0.0164 
    7384 rotated from previous position = 0.0529 degrees 
    7385 atoms outside contour = 1451, contour level = 0.023968 
    7386  
    7387 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7388 (#22) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7389 Matrix rotation and translation 
    7390 -0.13964442 0.99019960 0.00204716 26.33743899 
    7391 -0.99020118 -0.13964619 0.00074744 384.07392290 
    7392 0.00102599 -0.00192272 0.99999763 -82.91611955 
    7393 Axis -0.00134829 0.00051564 -0.99999896 
    7394 Axis point 180.06079181 180.52504141 0.00000000 
    7395 Rotation angle (degrees) 98.02739083 
    7396 Shift along axis 83.07856464 
    7397  
    7398 
    7399 > combine #21 #23
    7400 
    7401 > select subtract #22
    7402 
    7403 Nothing selected 
    7404 
    7405 > select add #23
    7406 
    7407 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    7408 
    7409 > color #23 #fba1f9ff
    7410 
    7411 > color #23 #be7abcff
    7412 
    7413 > color #23 #be5534ff
    7414 
    7415 > view matrix models
    7416 > #23,0.41393,0.91031,0.00032484,-56.173,-0.91031,0.41393,0.002586,274.74,0.0022196,-0.0013661,1,-51.112
    7417 
    7418 > view matrix models
    7419 > #23,0.41393,0.91031,0.00032484,-124.24,-0.91031,0.41393,0.002586,206.71,0.0022196,-0.0013661,1,33.239
    7420 
    7421 > view matrix models
    7422 > #23,0.41393,0.91031,0.00032484,-65.194,-0.91031,0.41393,0.002586,312.1,0.0022196,-0.0013661,1,-15.388
    7423 
    7424 > view matrix models
    7425 > #23,0.41393,0.91031,0.00032484,-51.009,-0.91031,0.41393,0.002586,292.9,0.0022196,-0.0013661,1,-26.171
    7426 
    7427 > fitmap #23 inMap #6
    7428 
    7429 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7430 (#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7431 average map value = 0.009615, steps = 468 
    7432 shifted from previous position = 5.58 
    7433 rotated from previous position = 39 degrees 
    7434 atoms outside contour = 1695, contour level = 0.023968 
    7435  
    7436 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7437 (#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7438 Matrix rotation and translation 
    7439 -0.24997180 0.96820436 0.00971624 46.60264910 
    7440 -0.96759907 -0.25015915 0.03424102 390.25483619 
    7441 0.03558291 -0.00084213 0.99936637 -31.64349668 
    7442 Axis -0.01811871 -0.01335885 -0.99974659 
    7443 Axis point 174.84209845 177.11302974 0.00000000 
    7444 Rotation angle (degrees) 104.50013523 
    7445 Shift along axis 25.57774082 
    7446  
    7447 
    7448 > view matrix models
    7449 > #23,-0.24997,0.9682,0.0097162,45.088,-0.9676,-0.25016,0.034241,392.37,0.035583,-0.00084213,0.99937,-33.623
    7450 
    7451 > view matrix models
    7452 > #23,-0.24997,0.9682,0.0097162,45.909,-0.9676,-0.25016,0.034241,392.85,0.035583,-0.00084213,0.99937,-36.132
    7453 
    7454 > fitmap #23 inMap #6
    7455 
    7456 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7457 (#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7458 average map value = 0.01533, steps = 76 
    7459 shifted from previous position = 2.87 
    7460 rotated from previous position = 6.44 degrees 
    7461 atoms outside contour = 1404, contour level = 0.023968 
    7462  
    7463 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7464 (#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7465 Matrix rotation and translation 
    7466 -0.14515572 0.98940556 0.00254093 27.38009576 
    7467 -0.98940753 -0.14515920 0.00124288 384.77502509 
    7468 0.00159855 -0.00233360 0.99999600 -31.27791094 
    7469 Axis -0.00180738 0.00047623 -0.99999825 
    7470 Axis point 179.93335653 180.52743058 0.00000000 
    7471 Rotation angle (degrees) 98.34651320 
    7472 Shift along axis 31.41161286 
    7473  
    7474 
    7475 > fitmap #23 inMap #6
    7476 
    7477 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7478 (#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7479 average map value = 0.01533, steps = 36 
    7480 shifted from previous position = 0.00512 
    7481 rotated from previous position = 0.147 degrees 
    7482 atoms outside contour = 1407, contour level = 0.023968 
    7483  
    7484 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7485 (#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7486 Matrix rotation and translation 
    7487 -0.14279403 0.98974968 0.00233329 27.00483709 
    7488 -0.98975220 -0.14279520 0.00033988 384.66704275 
    7489 0.00066958 -0.00226084 0.99999722 -31.13940148 
    7490 Axis -0.00131383 0.00084047 -0.99999878 
    7491 Axis point 180.08775000 180.60837389 0.00000000 
    7492 Rotation angle (degrees) 98.20967159 
    7493 Shift along axis 31.42718351 
    7494  
    7495 
    7496 > fitmap #23 inMap #6
    7497 
    7498 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7499 (#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7500 average map value = 0.01533, steps = 36 
    7501 shifted from previous position = 0.00437 
    7502 rotated from previous position = 0.00303 degrees 
    7503 atoms outside contour = 1406, contour level = 0.023968 
    7504  
    7505 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7506 (#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7507 Matrix rotation and translation 
    7508 -0.14275667 0.98975499 0.00236449 26.98962745 
    7509 -0.98975760 -0.14275781 0.00031999 384.66488903 
    7510 0.00065426 -0.00229459 0.99999715 -31.12839727 
    7511 Axis -0.00132082 0.00086396 -0.99999875 
    7512 Axis point 180.08534970 180.61298175 0.00000000 
    7513 Rotation angle (degrees) 98.20750981 
    7514 Shift along axis 31.42504678 
    7515  
    7516 
    7517 > fitmap #23 inMap #6
    7518 
    7519 Fit molecule copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7520 (#23) to map Rhom_Flagella_Map_2RingMasked.mrc (#6) using 2086 atoms 
    7521 average map value = 0.01533, steps = 28 
    7522 shifted from previous position = 0.0022 
    7523 rotated from previous position = 0.0351 degrees 
    7524 atoms outside contour = 1407, contour level = 0.023968 
    7525  
    7526 Position of copy of copy of copy of copy of copy of Rhom_Model_Trimmed.pdb
    7527 (#23) relative to Rhom_Flagella_Map_2RingMasked.mrc (#6) coordinates: 
    7528 Matrix rotation and translation 
    7529 -0.14332611 0.98967260 0.00240267 27.08414513 
    7530 -0.98967514 -0.14332776 0.00052753 384.69526819 
    7531 0.00086645 -0.00230225 0.99999697 -31.16099618 
    7532 Axis -0.00142965 0.00077612 -0.99999868 
    7533 Axis point 180.05181927 180.59394696 0.00000000 
    7534 Rotation angle (degrees) 98.24049541 
    7535 Shift along axis 31.42080434 
    7536  
    7537 
    7538 > select subtract #23
    7539 
    7540 Nothing selected 
    7541 
    7542 > combine #23 #24
    7543 
    7544 > select add #24
    7545 
    7546 2086 atoms, 2098 bonds, 1 pseudobond, 273 residues, 2 models selected 
    7547 
    7548 > color #24 #cbc9cbff
    7549 
    7550 > color #24 #5c5b5cff
    7551 
    7552 > view matrix models
    7553 > #24,-0.14333,0.98967,0.0024027,49.01,-0.98968,-0.14333,0.00052753,402.14,0.00086645,-0.0023023,1,-53.812
    7554 
    7555 > ui mousemode right "rotate selected models"
     2412[deleted to fit within ticket limits]
     2413
    75562414
    75572415> view matrix models