Tried to add model with the same id as another model

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22621
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "D:/File/PHD_related_work/423-apo 图/423-dianzimidu-ABCD.cxs"

Opened out.phi as #1, grid size 217,217,217, pixel 1, shown at level 402,-341,
step 1, values float32  
Map values for surface "423-coot8-from-xiaoruirui-coot-60.pdb_C SES surface":
minimum -280.9, mean -4.606, maximum 442.7  
Map values for surface "423-coot8-from-xiaoruirui-coot-60.pdb_D SES surface":
minimum -274.5, mean -5.46, maximum 500.6  
Map values for surface "423-coot8-from-xiaoruirui-coot-60.pdb_A SES surface":
minimum -322.8, mean -4.812, maximum 393.8  
Map values for surface "423-coot8-from-xiaoruirui-coot-60.pdb_B SES surface":
minimum -287.5, mean -5.698, maximum 348.5  
Log from Thu Mar 16 10:32:24 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open D:/Program/delphi/delphi/out.phi

Opened out.phi as #1, grid size 217,217,217, pixel 1, shown at level
-4.98,4.98, step 1, values float32  

> open D:/Program/delphi/delphi/423-coot8-from-xiaoruirui-coot-60.pdb

Chain information for 423-coot8-from-xiaoruirui-coot-60.pdb #2  
---  
Chain | Description  
A C | No description available  
B D | No description available  
  

> select add #2

21780 atoms, 22282 bonds, 2686 residues, 1 model selected  

> show sel surfaces

> ui tool show "Surface Color"

> color electrostatic #2.1-4 map #1 palette -10,#ff0000:0,#ffffff:10,#0000ff

Map values for surface "423-coot8-from-xiaoruirui-coot-60.pdb_A SES surface":
minimum -322.8, mean -4.812, maximum 393.8  
Map values for surface "423-coot8-from-xiaoruirui-coot-60.pdb_B SES surface":
minimum -287.5, mean -5.698, maximum 348.5  
Map values for surface "423-coot8-from-xiaoruirui-coot-60.pdb_C SES surface":
minimum -280.9, mean -4.606, maximum 442.7  
Map values for surface "423-coot8-from-xiaoruirui-coot-60.pdb_D SES surface":
minimum -274.5, mean -5.46, maximum 500.6  

> volume #1 level -4.985 level -21.34

> volume #1 level 55.19 level -21.34

> volume #1 level 30.74 level -21.34

> volume #1 level 30.74 level -68.35

> set bgColor white

> select clear

> save D:/File/PHD_related_work/博士毕业论文图/423_dianzimidu-ABCD.tif width 2000
> height 1285 supersample 3

> undo

> select clear

> turn x 90

[Repeated 3 time(s)]

> save D:/File/PHD_related_work/博士毕业论文图/423_dianzimidu-ABCD.tif width 856
> height 550 supersample 3

> turn x 90

> save D:/File/PHD_related_work/博士毕业论文图/423_dianzimidu-ABCD_90°.tif width 856
> height 550 supersample 3

> turn x 90

[Repeated 2 time(s)]

> hide #2.4 models

> hide #2.3 models

> hide #2.2 models

> select /D:139

12 atoms, 12 bonds, 1 residue, 1 model selected  

> select up

169 atoms, 174 bonds, 20 residues, 2 models selected  

> select up

5459 atoms, 5585 bonds, 673 residues, 2 models selected  

> select up

21780 atoms, 22282 bonds, 2686 residues, 2 models selected  

> select clear

> select add #2.2

5459 atoms, 673 residues, 1 model selected  

> select add #2.3

10890 atoms, 1343 residues, 2 models selected  

> select add #2.4

16349 atoms, 2016 residues, 3 models selected  

> cartoon hide (#!2 & sel)

> volume #1 level 401.9 level -68.35

> volume #1 level 401.9 level -341.4

> show #2.2 models

> show #2.3 models

> show #2.4 models

> select subtract #2.4

10890 atoms, 1343 residues, 4 models selected  

> select subtract #2.3

5459 atoms, 673 residues, 3 models selected  

> select subtract #2.2

1 model selected  

> turn x 90

> save D:/File/PHD_related_work/博士毕业论文图/423_dianzimidu-ABCD-1.tif width 856
> height 550 supersample 3

> turn x 90

> undo

> turn x 90

> turn x 270

> save D:/File/PHD_related_work/博士毕业论文图/423_dianzimidu-ABCD-2.tif width 856
> height 550 supersample 3

> turn x 90

> save D:/File/PHD_related_work/博士毕业论文图/423_dianzimidu-ABCD_90°-1.tif width
> 856 height 550 supersample 3

> turn x 270

> hide #2.2 models

> hide #2.3 models

> hide #2.4 models

> hide #2.1 models

> show #2.2 models

> show #2.3 models

> show #2.4 models

> hide #2.2 models

> hide #2.3 models

> select clear

> select /A:137

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select up

95 atoms, 97 bonds, 11 residues, 2 models selected  

> select up

5431 atoms, 5556 bonds, 670 residues, 2 models selected  

> cartoon hide (#!2 & sel)

> turn y 90

> save D:/File/PHD_related_work/博士毕业论文图/423_dianzimidu-A.tif width 856 height
> 550 supersample 3

> turn y 90

> save D:/File/PHD_related_work/博士毕业论文图/423_dianzimidu-A-90.tif width 856
> height 550 supersample 3

> turn y 90

[Repeated 1 time(s)]

> save D:/File/PHD_related_work/博士毕业论文图/423_dianzimidu-A-90-1.tif width 856
> height 550 supersample 3

> turn y 90

> cartoon (#!2 & sel)

[Repeated 1 time(s)]

> select add #2.2

10890 atoms, 5556 bonds, 1343 residues, 2 models selected  

> select add #2.3

16321 atoms, 5556 bonds, 2013 residues, 3 models selected  

> select add #2.4

21780 atoms, 5556 bonds, 2686 residues, 4 models selected  

> cartoon (#!2 & sel)

> select clear

> undo

> select clear

> save "D:/File/PHD_related_work/423-apo 图/423-dianzimidu-ABCD.cxs"

——— End of log from Thu Mar 16 10:32:24 2023 ———

opened ChimeraX session  

QDockWidget failed to find relevant screen info. screenFrom:
QScreen(0x203d39c4860, name="\\\\\\\\.\\\DISPLAY2") screenTo:
QScreen(0x203d39c4860, name="\\\\\\\\.\\\DISPLAY2") wdgScreen:
QScreen(0x203d39c4860, name="\\\\\\\\.\\\DISPLAY2") orgWdgScreen QScreen(0x0)  

[Repeated 89 time(s)]

> ui tool show "Surface Color"

> key red-white-blue :0.0 :0.5 :1.0 showTool true

> ui mousemode right "color key"

> ui mousemode right translate

> hide #!2 models

> show #!2 models

> close session

> open "D:/File/PHD_related_work/423-apo 图/423-apo-map-TMD-CNDB-ANK.cxs"

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.7, step 1, values float32  
Opened 423-apo-J55_sharpenmap 520-810.mrc as #4, grid size 320,320,320, pixel
1.04, shown at level 0.444, step 2, values float32  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "D:\Program\Chimera X\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 734, in restore  
obj = sm.restore_snapshot(self, data)  
File "D:\Program\Chimera X\ChimeraX\bin\lib\site-
packages\chimerax\core\models.py", line 534, in restore_snapshot  
m.set_state_from_snapshot(session, data)  
File "D:\Program\Chimera X\ChimeraX\bin\lib\site-
packages\chimerax\core\models.py", line 376, in set_state_from_snapshot  
p.add([self])  
File "D:\Program\Chimera X\ChimeraX\bin\lib\site-
packages\chimerax\core\models.py", line 293, in add  
om.add(models, parent = self)  
File "D:\Program\Chimera X\ChimeraX\bin\lib\site-
packages\chimerax\core\models.py", line 699, in add  
p = self._parent_for_added_model(model, parent, root_model = root_model)  
File "D:\Program\Chimera X\ChimeraX\bin\lib\site-
packages\chimerax\core\models.py", line 766, in _parent_for_added_model  
raise ValueError('Tried to add model %s with the same id as another model %s'  
ValueError: Tried to add model 2194 #3.376 with the same id as another model
2615 #3.376  
  
Log from Wed Mar 15 15:32:15 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "D:\File\PHD_related_work\423-apo 图\423_510-810&1-810-2.cxs" format
> session

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.7, step 1, values float32  
Opened 423-apo-J55_sharpenmap 520-810.mrc as #4, grid size 320,320,320, pixel
1.04, shown at level 0.444, step 2, values float32  
Log from Thu Feb 16 22:51:39 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "D:/File/PHD_related_work/423-apo 图/423_510-810&1-810-1.cxs"

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.7, step 1, values float32  
Opened 423-apo-J55_sharpenmap 520-810.mrc as #4, grid size 320,320,320, pixel
1.04, shown at level 0.444, step 2, values float32  
Log from Thu Feb 16 22:18:38 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "D:/File/PHD_related_work/423-apo 图/423-apo-ABCD-5.cxs"

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.7, step 1, values float32  
Log from Fri Feb 10 18:23:26 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "D:/File/PHD_related_work/423-apo 图/423-apo-ABCD-3.cxs"

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.7, step 1, values float32  
Log from Mon Feb 6 20:08:41 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "D:/File/PHD_related_work/423-apo 图/423-apo-ABCD-2.cxs"

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.7, step 1, values float32  
Log from Sun Feb 5 16:22:15 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open C:\Users\其玉杰哥\Desktop\423-apo-ABCD-1.cxs format session

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.7, step 1, values float32  
Log from Fri Feb 3 20:10:30 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "D:/File/PHD_related_work/423-apo 图/423-apo-ABC.cxs"

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.73, step 1, values float32  
Log from Thu Feb 2 15:31:09 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "D:\File\PHD_related_work\423-apo 图\423-apo-ABC半.cxs" format session

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.73, step 1, values float32  
Log from Wed Feb 1 21:00:53 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "D:/File/PHD_related_work/423-apo 图/423-apo-A.cxs"

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.73, step 1, values float32  
Log from Wed Feb 1 19:58:45 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "D:\File\PHD_related_work\423-apo 图\423-apo-map-ABCD-7.cxs" format
> session

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.7, step 1, values float32  
Log from Wed Feb 1 16:43:52 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open D:\File\PHD_related_work\423-apo\423-apo-J55_sharpenmap.mrc format mrc

Opened 423-apo-J55_sharpenmap.mrc as #1, grid size 320,320,320, pixel 1.04,
shown at level 0.444, step 2, values float32  

> open D:\File\PHD_related_work\423-apo\423-coot8-from-xiaoruirui-coot-60.pdb
> format pdb

Chain information for 423-coot8-from-xiaoruirui-coot-60.pdb #2  
---  
Chain | Description  
A C | No description available  
B D | No description available  
  

> ui tool show "Hide Dust"

> volume #1 step 1

> volume #1 level 0.7108

> surface dust #1 size 31.36

> ui tool show "Segment Map"

Segmenting 423-apo-J55_sharpenmap.mrc, density threshold 0.710816  
Only showing 1200 of 2669 regions.  
Showing 1200 of 2669 region surfaces  
4140 watershed regions, grouped to 2669 regions  
Showing 423-apo-J55_sharpenmap.seg - 2669 regions, 1200 surfaces  

> select #3.191

1 model selected  

> hide #2 models

> hide #!3 models

> hide #!1 models

> show #2 models

> select /A

5431 atoms, 5556 bonds, 670 residues, 1 model selected  
Overlapping 5431 atoms with 2669 regions  
Selected 175 regions  
Grouped 175 regions  

> show #!3 models

> select /B

5459 atoms, 5585 bonds, 673 residues, 1 model selected  
Overlapping 5459 atoms with 2495 regions  
Selected 173 regions  
Grouped 173 regions  

> select /C

5431 atoms, 5556 bonds, 670 residues, 1 model selected  
Overlapping 5431 atoms with 2323 regions  
Selected 182 regions  
Grouped 182 regions  

> select /D

5459 atoms, 5585 bonds, 673 residues, 1 model selected  
Overlapping 5459 atoms with 2142 regions  
Selected 173 regions  
Grouped 173 regions  

> select clear

> hide #!3 models

> show #!3 models

> show #!1 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> select #1

2 models selected  

> select clear

QDockWidget failed to find relevant screen info. screenFrom:
QScreen(0x259e4fec1e0, name="\\\\\\\\.\\\DISPLAY2") screenTo:
QScreen(0x259e4fec1e0, name="\\\\\\\\.\\\DISPLAY2") wdgScreen:
QScreen(0x259e4fec1e0, name="\\\\\\\\.\\\DISPLAY2") orgWdgScreen QScreen(0x0)  

[Repeated 23 time(s)]

> volume #1 level 0.8833

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> select /A

5431 atoms, 5556 bonds, 670 residues, 1 model selected  

> color sel red

> select /B

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> color sel lime

> select /C

5431 atoms, 5556 bonds, 670 residues, 1 model selected  

> color sel blue

> select /D

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> color sel magenta

> select clear

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> volume #1 level 0.7

> hide #!1 models

> show #!3 models

> select #3.1

1 model selected  

> color #1/B #E96800

> lighting soft

> show #!1 models

> color #1/B #E96800

> select clear

> lighting simple

> lighting soft

> select add #3.1

1 model selected  

QDockWidget failed to find relevant screen info. screenFrom:
QScreen(0x259e4fec1e0, name="\\\\\\\\.\\\DISPLAY2") screenTo:
QScreen(0x259e4fec1e0, name="\\\\\\\\.\\\DISPLAY2") wdgScreen:
QScreen(0x259e4fec1e0, name="\\\\\\\\.\\\DISPLAY2") orgWdgScreen QScreen(0x0)  

QWindowsWindow::setGeometry: Unable to set geometry 606x395-595+1182 (frame:
622x434-603+1151) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY2". Resulting geometry: 606x363-595+1182 (frame:
622x402-603+1151) margins: 8, 31, 8, 8 minimum size: 596x363 maximum size:
524287x363 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=402), mintrack=POINT(x=612, y=402)))  

QDockWidget failed to find relevant screen info. screenFrom:
QScreen(0x259e4fec1e0, name="\\\\\\\\.\\\DISPLAY2") screenTo:
QScreen(0x259e4fec1e0, name="\\\\\\\\.\\\DISPLAY2") wdgScreen:
QScreen(0x259e4fec1e0, name="\\\\\\\\.\\\DISPLAY2") orgWdgScreen QScreen(0x0)  

[Repeated 26 time(s)]

> select add #3.965

2 models selected  
Grouped 2 regions  

> select subtract #3.1

Nothing selected  

> select add #3.1

1 model selected  

> select add #3.1042

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> hide #!1 models

> hide #!3 models

> show #!1 models

> show #!3 models

> hide #!1 models

> hide #!3 models

> show #!3 models

> select clear

> select #3.2

1 model selected  

> select add #3.966

2 models selected  
Grouped 2 regions  

> select add #3.1043

2 models selected  
Grouped 2 regions  

> select add #3.345

2 models selected  
Grouped 2 regions  

> select add #3.416

2 models selected  

> select add #3.968

3 models selected  

> select add #3.871

4 models selected  

> select add #3.486

5 models selected  

> select add #3.712

6 models selected  

> select add #3.219

7 models selected  

> select add #3.243

8 models selected  

> select add #3.482

9 models selected  

> select add #3.1098

10 models selected  

> select add #3.524

11 models selected  

> select add #3.434

12 models selected  

> select add #3.511

13 models selected  

> select add #3.528

14 models selected  

> select add #3.927

15 models selected  

> select add #3.271

16 models selected  

> select add #3.285

17 models selected  

> select add #3.754

18 models selected  

> select add #3.807

19 models selected  

> select add #3.325

20 models selected  

> select subtract #3.325

19 models selected  
Grouped 19 regions  

> show #!1 models

Only showing 1200 of 1947 regions.  
Showing 1200 of 1947 region surfaces  

> select add #3.508

4 models selected  

> select add #3.568

5 models selected  

> select add #3.572

6 models selected  

> select add #3.191

7 models selected  

> select add #3.48

8 models selected  
Grouped 6 regions  

> select add #3.451

4 models selected  

> select subtract #3.451

3 models selected  
Grouped 1 regions  

> select add #3.451

4 models selected  
Grouped 2 regions  

> select add #3.414

4 models selected  

> select add #3.769

5 models selected  

> select add #3.260

6 models selected  
Grouped 4 regions  

> select add #3.305

4 models selected  

> select add #3.599

5 models selected  

> select add #3.233

6 models selected  

> select add #3.492

7 models selected  

> select add #3.708

8 models selected  

> select add #3.881

9 models selected  

> select add #3.65

10 models selected  

> select add #3.841

11 models selected  

> select add #3.641

12 models selected  

> select add #3.356

13 models selected  

> select add #3.230

14 models selected  

> select add #3.1114

15 models selected  

> select add #3.1054

16 models selected  

> select add #3.1022

17 models selected  

> select add #3.275

18 models selected  

> select add #3.366

19 models selected  

> select add #3.498

20 models selected  
Grouped 18 regions  

> select add #3.836

4 models selected  

> select add #3.768

5 models selected  

> select add #3.807

6 models selected  

> select add #3.714

7 models selected  

> select add #3.468

8 models selected  

> select add #3.696

9 models selected  

> select subtract #3.2

8 models selected  

> select subtract #3.696

7 models selected  

> select add #3.696

8 models selected  
Grouped 6 regions  

> select subtract #3.48

2 models selected  

> select clear

> select #3.2

1 model selected  

> select add #3.48

2 models selected  
Grouped 2 regions  

> select add #3.357

2 models selected  

> select add #3.67

3 models selected  

> select subtract #3.357

2 models selected  

> select add #3.357

3 models selected  
Grouped 3 regions  

> select add #3.635

2 models selected  

> select add #3.403

3 models selected  

> select clear

> select add #3.2

1 model selected  

> select add #3.1171

2 models selected  

> select #3.2

1 model selected  

> select clear

> select add #3.2

1 model selected  

> select add #3.466

2 models selected  

> select add #3.75

3 models selected  

> select add #3.623

4 models selected  

> select add #3.1053

5 models selected  

> select add #3.503

6 models selected  

> select add #3.778

7 models selected  

> select add #3.606

8 models selected  

> select add #3.458

9 models selected  
Grouped 9 regions  

> select add #3.183

2 models selected  

> select add #3.1120

3 models selected  
Grouped 3 regions  

> select add #3.478

2 models selected  
Grouped 2 regions  

> select add #3.635

2 models selected  

> select add #3.845

3 models selected  

> select subtract #3.635

2 models selected  

> select add #3.635

3 models selected  

> select add #3.4

4 models selected  

> select subtract #3.2

3 models selected  

> select #3.2

1 model selected  

> select add #3.635

2 models selected  

> select add #3.845

3 models selected  

> select add #3.403

4 models selected  

> select add #3.1025

5 models selected  

> select add #3.62

6 models selected  

> select subtract #3.1025

5 models selected  
Grouped 5 regions  

> select subtract #3.2

Nothing selected  

> select add #3.2

1 model selected  

> select #3.4

1 model selected  

> select #3.2

1 model selected  
Ungrouped to 5 regions  
Ungrouped to 6 regions  

> select #3.3

1 model selected  

> select #3.4

1 model selected  

> select add #3.388

2 models selected  

> select add #3.325

3 models selected  

> select subtract #3.325

2 models selected  

> select add #3.246

3 models selected  

> select add #3.878

4 models selected  

> select add #3.300

5 models selected  

> select add #3.188

6 models selected  

> select add #3.1170

7 models selected  

> select add #3.569

8 models selected  

> select add #3.168

9 models selected  

> select add #3.974

10 models selected  

> select add #3.170

11 models selected  

> select add #3.49

12 models selected  

> select add #3.719

13 models selected  

> select add #3.915

14 models selected  

> select add #3.782

15 models selected  

> select add #3.914

16 models selected  

> select add #3.425

17 models selected  

> select add #3.626

18 models selected  

> select add #3.666

19 models selected  

> select add #3.957

20 models selected  

> select add #3.1013

21 models selected  

> select add #3.883

22 models selected  

> select subtract #3.1013

21 models selected  

> select add #3.1013

22 models selected  

> select add #3.286

23 models selected  

> select add #3.330

24 models selected  

> select add #3.660

25 models selected  

> select add #3.773

26 models selected  

> select add #3.336

27 models selected  

> select add #3.1169

28 models selected  

> select add #3.349

29 models selected  

> select add #3.917

30 models selected  

> select add #3.1026

31 models selected  

> select add #3.872

32 models selected  

> select add #3.178

33 models selected  

> select add #3.459

34 models selected  

> select subtract #3.4

33 models selected  

> select add #3.4

34 models selected  
Grouped 34 regions  

> select add #3.611

2 models selected  

> select add #3.1096

3 models selected  

> select add #3.1194

4 models selected  

> select add #3.126

5 models selected  

> select add #3.23

6 models selected  

> select add #3.586

7 models selected  

> select add #3.159

8 models selected  

> select subtract #3.1096

7 models selected  

> select add #3.1096

8 models selected  

> select add #3.271

9 models selected  

> select add #3.504

10 models selected  

> select add #3.1118

11 models selected  

> select add #3.1067

12 models selected  

> select add #3.78

13 models selected  

> select add #3.821

14 models selected  

> select add #3.256

15 models selected  

> select add #3.690

16 models selected  

> select add #3.413

17 models selected  

> select add #3.428

18 models selected  

> select add #3.266

19 models selected  

> select add #3.244

20 models selected  

> select add #3.1

21 models selected  

> select subtract #3.244

20 models selected  

> select add #3.244

21 models selected  

> select subtract #3.1

20 models selected  

> select add #3.1092

21 models selected  

> select add #3.977

22 models selected  

> select add #3.158

23 models selected  

> select add #3.412

24 models selected  

> select add #3.652

25 models selected  

> select add #3.239

26 models selected  

> select add #3.1086

27 models selected  

> select subtract #3.652

26 models selected  

> select add #3.652

27 models selected  

> select add #3.506

28 models selected  

> select add #3.175

29 models selected  

> select add #3.721

30 models selected  

> select add #3.431

31 models selected  

> select add #3.933

32 models selected  

> select add #3.1016

33 models selected  

> select add #3.733

34 models selected  

> select add #3.495

35 models selected  

> select add #3.1029

36 models selected  

> select add #3.472

37 models selected  

> select add #3.1084

38 models selected  
Grouped 38 regions  

> select add #3.482

2 models selected  

> select add #3.1005

3 models selected  

> select add #3.871

4 models selected  
Grouped 4 regions  

> select clear

> select add #3.1

1 model selected  

> select add #3.567

2 models selected  

> select add #3.571

3 models selected  

> select add #3.499

4 models selected  

> select add #3.523

5 models selected  

> select add #3.344

6 models selected  

> select add #3.494

7 models selected  

> select add #3.454

8 models selected  

> select add #3.967

9 models selected  

> select add #3.527

10 models selected  

> select add #3.922

11 models selected  

> select add #3.415

12 models selected  

> select add #3.270

13 models selected  

> select add #3.753

14 models selected  

> select add #3.284

15 models selected  

> select add #3.465

16 models selected  

> select add #3.711

17 models selected  

> select add #3.473

18 models selected  

> select add #3.758

19 models selected  

> select add #3.410

20 models selected  

> select add #3.304

21 models selected  

> select add #3.224

22 models selected  

> select add #3.218

23 models selected  

> select subtract #3.218

22 models selected  

> select add #3.218

23 models selected  

> select add #3.190

24 models selected  

> select add #3.242

25 models selected  

> select add #3.808

26 models selected  

> select add #3.324

27 models selected  

> select add #3.598

28 models selected  

> select add #3.389

29 models selected  

> select subtract #3.571

28 models selected  

> select add #3.571

29 models selected  

> select add #3.481

30 models selected  

> select add #3.632

31 models selected  

> select add #3.681

32 models selected  

> select add #3.1052

33 models selected  

> select add #3.621

34 models selected  

> select add #3.777

35 models selected  

> select add #3.605

36 models selected  

> select add #3.200

37 models selected  

> select add #3.950

38 models selected  

> select add #3.672

39 models selected  

> select add #3.658

40 models selected  

> select add #3.233

41 models selected  

> select add #3.619

42 models selected  

> select subtract #3.233

41 models selected  

> select add #3.433

42 models selected  

> select add #3.510

43 models selected  

> select add #3.232

44 models selected  

> select add #3.592

45 models selected  

> select add #3.491

46 models selected  

> select add #3.485

47 models selected  

> select add #3.889

48 models selected  

> select add #3.1051

49 models selected  

> select add #3.497

50 models selected  

> select add #3.320

51 models selected  

> select add #3.469

52 models selected  

> select add #3.74

53 models selected  

> select add #3.741

54 models selected  

> select add #3.500

55 models selected  

> select add #3.319

56 models selected  

> select add #3.3

57 models selected  

> select subtract #3.3

56 models selected  

> select add #3.1024

57 models selected  

> select add #3.640

58 models selected  

> select add #3.1133

59 models selected  

> select add #3.1189

60 models selected  

> select add #3.587

61 models selected  

> select add #3.436

62 models selected  

> select add #3.853

63 models selected  

> select add #3.1112

64 models selected  

> select add #3.1017

65 models selected  

> select add #3.477

66 models selected  

> select add #3.214

67 models selected  

> select add #3.89

68 models selected  

> select add #3.854

69 models selected  

> select add #3.906

70 models selected  

> select add #3.208

71 models selected  

> select add #3.3

72 models selected  

> select subtract #3.3

71 models selected  

> select add #3.143

72 models selected  

> select add #3.839

73 models selected  

> select add #3.910

74 models selected  

> select add #3.705

75 models selected  

> select add #3.1097

76 models selected  

> select add #3.629

77 models selected  

> select add #3.152

78 models selected  

> select add #3.233

79 models selected  

> select subtract #3.233

78 models selected  
Grouped 78 regions  

> select clear

> select add #3.1

1 model selected  

> select add #3.381

2 models selected  
Grouped 2 regions  

> select #3.3

1 model selected  

> select #3.1

1 model selected  

> select add #3.47

2 models selected  
Grouped 2 regions  

> select #3.3

1 model selected  

> select add #3.171

2 models selected  

> select add #3.975

3 models selected  

> select add #3.1

4 models selected  

> select subtract #3.1

3 models selected  

> select add #3.179

4 models selected  

> select add #3.460

5 models selected  

> select add #3.551

6 models selected  

> select add #3.378

7 models selected  

> select add #3.564

8 models selected  

> select add #3.189

9 models selected  

> select add #3.301

10 models selected  

> select add #3.1160

11 models selected  

> select add #3.247

12 models selected  

> select add #3.879

13 models selected  

> select add #3.891

14 models selected  

> select add #3.771

15 models selected  

> select add #3.890

16 models selected  

> select add #3.754

17 models selected  

> select add #3.720

18 models selected  

> select add #3.169

21 models selected  

> select add #3.570

20 models selected  

> select add #3.1171

21 models selected  

> select add #3.50

22 models selected  

> select add #3.426

23 models selected  

> select add #3.627

24 models selected  

> select add #3.884

25 models selected  

> select add #3.331

26 models selected  

> select add #3.1014

27 models selected  

> select add #3.287

28 models selected  

> select add #3.667

29 models selected  

> select add #3.337

30 models selected  

> select add #3.963

31 models selected  

> select add #3.507

32 models selected  

> select add #3.387

33 models selected  

> select add #3.496

34 models selected  

> select add #3.1030

35 models selected  

> select add #3.416

36 models selected  

> select add #3.1006

37 models selected  

> select add #3.888

38 models selected  

> select add #3.180

39 models selected  

> select add #3.432

40 models selected  

> select add #3.722

41 models selected  

> select add #3.1168

42 models selected  

> select add #3.505

43 models selected  

> select add #3.625

44 models selected  

> select add #3.822

45 models selected  

> select add #3.661

46 models selected  

> select add #3.818

47 models selected  

> select add #3.234

48 models selected  

> select add #3.600

49 models selected  

> select add #3.94

50 models selected  

> select add #3.820

51 models selected  

> select add #3.996

52 models selected  

> select add #3.421

53 models selected  

> select subtract #3.432

52 models selected  

> select add #3.432

53 models selected  

> select add #3.1068

54 models selected  

> select add #3.99

55 models selected  

> select add #3.691

56 models selected  

> select add #3.832

57 models selected  

> select add #3.631

58 models selected  

> select add #3.1180

59 models selected  

> select add #3.197

60 models selected  

> select subtract #3.1006

59 models selected  

> select add #3.893

60 models selected  

> select add #3.1006

61 models selected  

> select add #3.1

62 models selected  

> select subtract #3.1

61 models selected  
Grouped 61 regions  

> select add #3.471

2 models selected  

> select add #3.1

3 models selected  

> select subtract #3.1

2 models selected  

> select add #3.110

3 models selected  

> select add #3.233

4 models selected  

> select subtract #3.233

3 models selected  

> select add #3.947

4 models selected  

> select add #3.1082

5 models selected  

> select add #3.1023

6 models selected  

> select add #3.924

7 models selected  

> select add #3.612

8 models selected  

> select add #3.874

9 models selected  

> select add #3.774

10 models selected  

> select add #3.1027

11 models selected  

> select add #3.1187

12 models selected  

> select add #3.923

13 models selected  

> select add #3.161

14 models selected  

> select add #3.359

15 models selected  

> select add #3.1102

16 models selected  

> select add #3.1195

17 models selected  

> select add #3.607

18 models selected  

> select add #3.461

19 models selected  

> select add #3.1099

20 models selected  

> select add #3.295

21 models selected  

> select add #3.563

22 models selected  

> select add #3.772

23 models selected  

> select add #3.265

24 models selected  

> select add #3.959

25 models selected  

> select add #3.761

26 models selected  
Grouped 26 regions  

> select #3.1

1 model selected  

> select add #3.1002

2 models selected  

> select add #3.4

3 models selected  

> select #3.1

1 model selected  

> select #3.4

1 model selected  

> select add #3.1002

2 models selected  
Grouped 2 regions  

> select #3.3

1 model selected  

> select clear

> select #3.3

1 model selected  

> select add #3.1046

4 models selected  

> select add #3.1003

3 models selected  

> select subtract #3.1003

2 models selected  
Grouped 2 regions  

> select add #3.380

2 models selected  

> select add #3.233

3 models selected  

> select add #3.597

4 models selected  

> select add #3.628

5 models selected  
Grouped 5 regions  

> select #3.4

1 model selected  

> select #3.3

1 model selected  

> select add #3.325

2 models selected  

> select subtract #3.3

1 model selected  

> select add #3.3

2 models selected  

> select subtract #3.325

1 model selected  

> select add #3.325

2 models selected  
Grouped 2 regions  

> select add #3.470

2 models selected  
Grouped 2 regions  

> select clear

> save "D:/File/PHD_related_work/423-apo 图/423-apo-map-ABCD-7.cxs"

——— End of log from Wed Feb 1 16:43:52 2023 ———

opened ChimeraX session  
Showing 423-apo-J55_sharpenmap.seg - 1660 regions, 913 surfaces  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!1 models

> hide #2 models

> show #!1 models

> hide #!3 models

> show #!3 models

> select add #3.912

1 model selected  

> select clear

> select #3.912

1 model selected  

> hide #!3 models

> show #!3 models

> select add #3.901

2 models selected  

> select #3.912

1 model selected  

> select clear

> select add #3.854

1 model selected  

> select #3.912

1 model selected  

> select add #3.854

2 models selected  

> select add #3.856

3 models selected  

> select add #3.759

4 models selected  

> select add #3.911

5 models selected  

> select subtract #3.911

4 models selected  

> select add #3.913

5 models selected  

> select subtract #3.913

4 models selected  

> select add #3.911

5 models selected  

> select subtract #3.911

4 models selected  

> select add #3.754

5 models selected  

> select add #3.525

6 models selected  

> select add #3.465

7 models selected  

> select clear

Segmenting 423-apo-J55_sharpenmap.mrc, density threshold 0.700000  
Only showing 1500 of 2779 regions.  
Showing 1500 of 2779 region surfaces  
4264 watershed regions, grouped to 2779 regions  
Showing 423-apo-J55_sharpenmap.seg - 2779 regions, 1500 surfaces  

> select #3.215

1 model selected  

> select #3.183

1 model selected  

> select #1

2 models selected  
Segmenting 423-apo-J55_sharpenmap.mrc, density threshold 0.700000  
Only showing 1500 of 3276 regions.  
Showing 1500 of 3276 region surfaces  
4264 watershed regions, grouped to 3276 regions  
Showing 423-apo-J55_sharpenmap.seg - 3276 regions, 1500 surfaces  

> select clear

> select #1

2 models selected  

> select clear

> select #1

2 models selected  
Segmenting 423-apo-J55_sharpenmap.mrc, density threshold 0.700000  
Only showing 2000 of 3276 regions.  
Showing 2000 of 3276 region surfaces  
4264 watershed regions, grouped to 3276 regions  
Showing 423-apo-J55_sharpenmap.seg - 3276 regions, 2000 surfaces  

> select #3.839

1 model selected  

> select #3.147

1 model selected  

> select #1

2 models selected  

> select #3.147

1 model selected  

> select #1

2 models selected  
Segmenting 423-apo-J55_sharpenmap.mrc, density threshold 0.700000  
Only showing 3000 of 3276 regions.  
Showing 3000 of 3276 region surfaces  
4264 watershed regions, grouped to 3276 regions  
Showing 423-apo-J55_sharpenmap.seg - 3276 regions, 3000 surfaces  

> select #3.2328

1 model selected  

> select #3.2598

1 model selected  

> select #3.945

1 model selected  

> select #3.431

1 model selected  

> select #3.431

1 model selected  

> select #3.381

1 model selected  

> select #3.1670

1 model selected  

> select #3.403

1 model selected  

> select #3.420

1 model selected  

> select /A

5431 atoms, 5556 bonds, 670 residues, 1 model selected  
Overlapping 5431 atoms with 3276 regions  
Selected 268 regions  
Grouped 268 regions  

> select /B

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> color #1,3 red

Overlapping 5459 atoms with 3009 regions  
Selected 264 regions  

> undo

[Repeated 1 time(s)]

> select clear

> select /B

5459 atoms, 5585 bonds, 673 residues, 1 model selected  
Overlapping 5459 atoms with 3009 regions  
Selected 264 regions  
Grouped 264 regions  

> select /C

5431 atoms, 5556 bonds, 670 residues, 1 model selected  
Overlapping 5431 atoms with 2746 regions  
Selected 274 regions  
Grouped 274 regions  

> select /D

5459 atoms, 5585 bonds, 673 residues, 1 model selected  
Overlapping 5459 atoms with 2473 regions  
Selected 267 regions  
Grouped 267 regions  

> hide #!3 models

> show #!3 models

> save "D:/File/PHD_related_work/423-apo 图/423-apo-map-ABCD-8.cxs"

> select #3.4

1 model selected  

> select add #3.2263

2 models selected  

> select add #3.2224

3 models selected  

> select add #3.2661

4 models selected  

> select add #3.1703

5 models selected  

> select add #3.1477

6 models selected  

> select add #3.2832

7 models selected  

> select add #3.2667

8 models selected  

> select add #3.2226

9 models selected  

> select add #3.1692

10 models selected  

> select add #3.915

11 models selected  

> select add #3.1170

12 models selected  

> select add #3.680

13 models selected  

> select add #3.1936

14 models selected  

> select add #3.2395

15 models selected  

> select add #3.2737

16 models selected  

> select add #3.1928

17 models selected  

> select add #3.1625

18 models selected  

> select add #3.2386

19 models selected  

> select add #3.1391

20 models selected  

> select add #3.472

21 models selected  

> select add #3.1881

22 models selected  

> select add #3.2614

23 models selected  

> select add #3.599

24 models selected  

> select add #3.929

25 models selected  

> select add #3.611

26 models selected  

> select add #3.1429

27 models selected  

> select add #3.1637

28 models selected  

> select add #3.817

29 models selected  

> select add #3.216

30 models selected  

> select add #3.394

31 models selected  

> select add #3.88

32 models selected  
Grouped 32 regions  

> select add #3.2268

4 models selected  

> select add #3.764

5 models selected  

> select add #3.2041

6 models selected  
Grouped 4 regions  

> select add #3.692

4 models selected  

> select add #3.1141

5 models selected  

> select add #3.889

6 models selected  

> select add #3.1435

7 models selected  

> select add #3.2491

8 models selected  

> select add #3.729

9 models selected  

> select add #3.2042

10 models selected  

> select add #3.1971

11 models selected  

> select add #3.2145

12 models selected  

> select add #3.2872

13 models selected  

> select add #3.1649

14 models selected  

> select add #3.3

15 models selected  

> select add #3.2475

16 models selected  

> select subtract #3.3

13 models selected  
Grouped 13 regions  

> select add #3.2972

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select add #3.1107

2 models selected  

> select add #3.1063

3 models selected  

> select add #3.1189

4 models selected  

> select add #3.1009

7 models selected  

> select add #3.629

8 models selected  

> select add #3.1185

9 models selected  

> select add #3.1652

10 models selected  

> select add #3.1876

11 models selected  

> select add #3.1204

12 models selected  

> select add #3.1597

13 models selected  

> select add #3.2065

14 models selected  
Grouped 12 regions  

> hide #!3 models

> select clear

> show #!3 models

> select add #3.819

1 model selected  

> select add #3.332

2 models selected  

> select add #3.1368

3 models selected  
Grouped 3 regions  
Grouped 1 regions  

> hide #!3 models

> select clear

> show #!3 models

> hide #!3 models

> select clear

> select #1

2 models selected  

> select clear

> select #1

2 models selected  

> select clear

> show #!3 models

> select clear

[Repeated 1 time(s)]Drag select of 5069, 59 of 564 triangles, 1426, 225 of 292
triangles, 3070, 250 of 280 triangles, 1799, 97 of 264 triangles, 1179, 138 of
240 triangles, 1356, 8 of 236 triangles, 1358, 97 of 188 triangles, 1235,
3244, 2531, 2336, 2666, 1807, 2451, 2457, 104 of 168 triangles, 1229, 3084,
2736, 142 of 156 triangles, 2526, 122 of 164 triangles, 3486, 18 of 156
triangles, 1042, 3154, 2263, 2728, 131 of 136 triangles, 2734, 2527, 2338,
2329, 65 of 144 triangles, 1889, 71 of 108 triangles, 1492, 60 of 112
triangles, 2994, 88 of 112 triangles, 2265, 14 of 112 triangles, 2328, 110 of
128 triangles, 2455, 18 of 80 triangles, 2810, 2118, 1956, 1417, 7 of 100
triangles, 3634, 42 of 80 triangles, 1124, 3337, 2394, 1722, 1175, 16 of 80
triangles, 2204, 62 of 80 triangles, 3897, 2814  
Grouped 47 regions  
Drag select of 3184, 267 of 268 triangles, 2426, 157 of 260 triangles, 1834,
153 of 236 triangles, 1326, 140 of 212 triangles, 1532, 164 of 296 triangles,
2771, 123 of 200 triangles, 1150, 73 of 212 triangles, 1322, 48 of 188
triangles, 2425, 2159, 1451, 175 of 176 triangles, 3372, 88 of 172 triangles,
2769, 1325, 18 of 160 triangles, 1769, 2855, 158 of 172 triangles, 2482, 46 of
136 triangles, 1528, 1380, 118 of 144 triangles, 1378, 1055, 2695, 2694, 2423,
1835, 31 of 80 triangles, 1666, 83 of 104 triangles, 2164, 77 of 80 triangles,
1768, 3453, 2424, 8 of 56 triangles, 2422, 2162, 2161  

> select add #3.1851

35 models selected  

> select add #3.1898

36 models selected  

> select add #3.1875

37 models selected  

> select add #3.1821

38 models selected  

> select add #3.1682

39 models selected  

> select add #3.1671

40 models selected  

> select add #3.1672

41 models selected  

> select add #3.1816

42 models selected  

> select add #3.2560

43 models selected  

> select add #3.2236

44 models selected  

> select add #3.2561

45 models selected  

> select add #3.2055

46 models selected  

> select add #3.2346

47 models selected  

> select add #3.2733

48 models selected  

> select add #3.2881

49 models selected  

> select add #3.1595

50 models selected  

> select add #3.2915

51 models selected  

> select subtract #3.2055

50 models selected  

> select subtract #3.2346

49 models selected  

> select subtract #3.2561

48 models selected  

> select subtract #3.2236

47 models selected  

> select add #3.2586

48 models selected  
Grouped 48 regions  
Drag select of 3063, 1798, 180 of 268 triangles, 1418, 14 of 296 triangles,
2868, 15 of 228 triangles, 2599, 75 of 192 triangles, 2514, 165 of 208
triangles, 2315, 3213, 3208, 2114, 135 of 180 triangles, 3539, 2655, 107 of
176 triangles, 2438, 119 of 200 triangles, 2444, 3052, 2980, 76 of 184
triangles, 1716, 97 of 200 triangles, 2719, 142 of 144 triangles, 2517, 3484,
53 of 144 triangles, 3406, 126 of 156 triangles, 3299, 25 of 136 triangles,
2253, 2258, 136 of 148 triangles, 3139, 130 of 148 triangles, 2722, 2727,
2515, 2322, 3400, 55 of 108 triangles, 3386, 9 of 120 triangles, 2961, 2252,
67 of 112 triangles, 2523, 11 of 120 triangles, 2323, 2497, 5 of 80 triangles,
2806, 2108, 3309, 47 of 80 triangles, 1940, 32 of 80 triangles, 3620, 2386, 94
of 96 triangles, 3745, 43 of 56 triangles, 2802, 3884  

> select add #3.1627

47 models selected  

> select add #3.2078

48 models selected  

> select add #3.2617

49 models selected  

> select add #3.2857

50 models selected  

> select add #3.2362

51 models selected  

> select add #3.2799

52 models selected  

> select add #3.2517

53 models selected  

> select add #3.2885

54 models selected  

> select add #3.2494

55 models selected  

> select add #3.2947

56 models selected  
Grouped 56 regions  
Drag select of 4937, 197 of 508 triangles, 5049, 1364, 109 of 404 triangles,
1602, 3272, 1521, 80 of 256 triangles, 3107, 165 of 252 triangles, 2469, 3179,
3510, 121 of 244 triangles, 1914, 1603, 102 of 288 triangles, 2359, 61 of 236
triangles, 2283, 3717, 2843, 3772, 3363, 3365, 1373, 131 of 188 triangles,
3718, 2475, 2470, 3275, 3175, 3177, 2290, 1761, 3447, 3276, 1524, 2934, 149 of
168 triangles, 3103, 147 of 176 triangles, 2564, 2059, 113 of 172 triangles,
1977, 1976, 3586, 191 of 192 triangles, 2225, 3713, 83 of 168 triangles, 2154,
94 of 152 triangles, 1827, 1314, 1315, 3855, 127 of 144 triangles, 3105, 126
of 152 triangles, 2929, 3516, 44 of 156 triangles, 1975, 3591, 2847, 2848,
2845, 2153, 16 of 136 triangles, 1443, 87 of 136 triangles, 1445, 3857, 2562,
121 of 140 triangles, 2563, 2560, 3518, 1607, 2356, 1764, 98 of 136 triangles,
3720, 3917, 1447, 107 of 112 triangles, 3774, 23 of 120 triangles, 3858, 3367,
4095, 95 of 108 triangles, 3368, 1663, 76 of 120 triangles, 1661, 1658, 67 of
120 triangles, 2761, 2758, 113 of 120 triangles, 2760, 3590, 3585, 97 of 112
triangles, 2289, 3446, 2472, 2846, 3914, 30 of 80 triangles, 3271, 1912, 1448,
3658, 2689, 52 of 80 triangles, 1829, 1825, 3859, 2933, 3587, 43 of 80
triangles, 2219, 2218, 28 of 80 triangles, 2222, 2285, 1763, 3449, 11 of 56
triangles, 3448, 2473, 2471, 3918, 2418, 2157, 1 423-apo-J55_sharpenmap.mrc  

> select add #3.2

111 models selected  

> select subtract #3.2

110 models selected  
Grouped 108 regions  
Drag select of 5171, 333 of 608 triangles, 4997, 170 of 460 triangles, 3360,
211 of 368 triangles, 1754, 156 of 312 triangles, 2839, 2753, 33 of 280
triangles, 3584, 78 of 232 triangles, 2358, 2412, 149 of 188 triangles, 3016,
2757, 3266, 25 of 204 triangles, 2930, 3101, 2221, 3273, 2561, 3364, 5209,
2060, 2355  
Drag select of 2416, 16 of 296 triangles, 2417, 206 of 248 triangles, 2763,
3178, 174 of 184 triangles, 3592, 84 of 184 triangles, 2765, 9 of 172
triangles, 2156, 153 of 160 triangles, 2764, 2360, 3112, 2474, 123 of 128
triangles, 2631, 23 of 80 triangles, 1664, 63 of 80 triangles, 2158  
Drag select of 1361, 19 of 472 triangles, 5141, 421 of 592 triangles, 5095, 92
of 412 triangles, 1899, 5189, 168 of 324 triangles, 2280, 136 of 304
triangles, 2680, 2146, 2054, 166 of 236 triangles, 1510, 1517, 152 of 212
triangles, 2746, 1241, 2405, 2922, 11 of 164 triangles, 1752, 39 of 164
triangles, 3260, 13 of 144 triangles, 1894, 3005, 1746, 2213, 2683, 28 of 148
triangles, 3434, 11 of 112 triangles, 1743, 29 of 120 triangles, 2557, 110 of
120 triangles, 2546, 2552, 3580, 78 of 80 triangles  
Drag select of 5227, 14 of 420 triangles, 2318, 274 of 332 triangles, 2595,
304 of 336 triangles, 5173, 20 of 304 triangles, 2320, 126 of 224 triangles,
5197, 34 of 256 triangles, 2019, 2598, 53 of 196 triangles, 2883, 184 of 196
triangles, 3312, 70 of 144 triangles, 2592, 2881, 5 of 144 triangles, 2311, 9
of 136 triangles, 1939, 93 of 108 triangles, 2519, 1340, 21 of 80 triangles,
3142  
Drag select of 3127, 16 of 364 triangles, 2302, 163 of 376 triangles, 1844,
230 of 320 triangles, 5162, 203 of 268 triangles, 1548, 114 of 224 triangles,
2240, 173 of 244 triangles, 2708, 175 of 176 triangles, 3381, 2431, 2707,
2639, 70 of 160 triangles, 2488, 1998, 21 of 144 triangles, 2236, 3125, 1543  
Drag select of 1675, 2776, 284 of 292 triangles, 2939, 39 of 196 triangles,
2698, 123 of 192 triangles, 2367, 142 of 200 triangles, 1983, 1256, 2296,
2484, 15 of 56 triangles  
Drag select of 3025, 251 of 252 triangles, 2233, 187 of 208 triangles, 2294,
1917, 24 of 172 triangles, 2163, 103 of 168 triangles, 2854, 1918, 38 of 168
triangles, 2069, 3185, 99 of 152 triangles, 2480, 2481, 1615, 44 of 112
triangles, 2768, 72 of 80 triangles  
Drag select of 1533, 183 of 268 triangles, 3661, 173 of 192 triangles, 3181,
37 of 200 triangles, 1918, 63 of 168 triangles, 1252, 118 of 152 triangles,
1253, 106 of 168 triangles, 2295, 99 of 140 triangles, 3778, 79 of 80
triangles  
Drag select of 3114, 218 of 236 triangles, 3723, 131 of 200 triangles, 2858,
35 of 204 triangles, 3661, 3181, 3459, 18 of 184 triangles, 3182, 101 of 176
triangles, 3030, 3525, 152 of 180 triangles, 3520, 2070, 118 of 140 triangles,
3779, 104 of 108 triangles, 3521, 2228, 43 of 120 triangles, 2697, 2851, 2859,
8 of 80 triangles  

> select add #3.1779

139 models selected  
Grouped 139 regions  

> select add #3.1803

2 models selected  
Drag select of 2362, 35 of 260 triangles, 1979, 206 of 228 triangles, 2292,
2691, 1767, 58 of 200 triangles, 2419, 3116, 56 of 184 triangles, 3118, 98 of
188 triangles, 2850, 3451, 46 of 144 triangles, 2767, 2067, 157 of 168
triangles, 2690, 14 of 160 triangles, 2291, 3452, 2479, 2770, 118 of 148
triangles, 3021, 1665, 2421, 121 of 136 triangles, 3278, 16 of 112 triangles,
3277, 99 of 112 triangles, 1837, 37 of 120 triangles, 1611, 1376, 2567, 77 of
80 triangles, 1609, 2232, 61 of 80 triangles, 1375, 2632, 2477  

> select add #3.2100

34 models selected  

> select add #3.2437

35 models selected  
Drag select of 5064, 136 of 540 triangles, 1398, 11 of 312 triangles, 1790,
1216, 3399, 46 of 148 triangles, 1858, 83 of 112 triangles, 3049, 57 of 108
triangles, 2440, 1111, 1708, 1168, 2181  

> select add #3.1726

48 models selected  
Drag select of 1631, 64 of 80 triangles  
Drag select of 1173, 141 of 192 triangles, 3317  

> select add #3.2214

52 models selected  

> select add #3.2051

53 models selected  

> select add #3.2008

54 models selected  
Grouped 54 regions  
Drag select of 1849, 80 of 280 triangles, 1337, 154 of 188 triangles, 1468, 22
of 224 triangles, 1211, 116 of 208 triangles, 2376, 125 of 160 triangles,
1853, 88 of 136 triangles, 1034, 112 of 136 triangles, 2950, 22 of 144
triangles, 2173, 119 of 136 triangles  

> select add #3.1509

11 models selected  

> select add #3.2402

12 models selected  

> select add #3.2582

13 models selected  

> select add #3.1570

14 models selected  

> select add #3.2104

15 models selected  

> select add #3.2277

16 models selected  

> select add #3.2418

17 models selected  

> select add #3.2815

18 models selected  

> select add #3.2618

19 models selected  

> select add #3.2846

20 models selected  
Grouped 20 regions  
Drag select of 2916, 60 of 240 triangles, 3249, 3572, 143 of 168 triangles,
3413, 4 of 152 triangles, 2259, 25 of 148 triangles, 3419, 21 of 120
triangles, 1718, 63 of 112 triangles  
Drag select of 5245, 63 of 280 triangles, 3698, 3420, 110 of 148 triangles,
1285, 36 of 136 triangles, 3419, 16 of 120 triangles, 3085, 119 of 120
triangles, 3426, 1886, 19 of 80 triangles, 1642, 76 of 80 triangles, 3491  
Drag select of 4901, 29 of 752 triangles, 1357, 242 of 360 triangles, 5234, 63
of 388 triangles, 1300, 16 of 320 triangles, 3706, 169 of 200 triangles, 3501,
3346, 6 of 132 triangles, 1810, 3252, 3702, 15 of 56 triangles, 2138  
Drag select of 2354, 3268  
Drag select of 5149, 44 of 484 triangles, 1978, 131 of 156 triangles, 2476  
Drag select of 5242, 98 of 440 triangles, 1316, 23 of 228 triangles, 1197, 241
of 284 triangles, 2064, 213 of 224 triangles, 1830, 3108, 60 of 220 triangles,
1374, 10 of 216 triangles, 2688, 178 of 200 triangles, 1759, 100 of 184
triangles, 1913, 72 of 168 triangles, 5143, 1525, 1144, 94 of 160 triangles,
2476, 37 of 132 triangles, 1606, 2155, 94 of 120 triangles  

> select subtract #3.1245

45 models selected  
Drag select of 5224, 339 of 428 triangles, 2630, 2288, 72 of 256 triangles,
1660, 5 of 256 triangles, 2226, 211 of 236 triangles, 2931, 88 of 200
triangles, 1319, 81 of 188 triangles, 2062, 15 of 168 triangles, 2063, 144 of
180 triangles, 1760, 141 of 168 triangles, 2628, 6 of 136 triangles, 2357, 101
of 144 triangles, 2685, 98 of 132 triangles, 1372, 83 of 136 triangles, 1832,
1604, 105 of 124 triangles, 2687, 2415, 3366, 18 of 80 triangles  
Grouped 64 regions  

> select add #3.2205

2 models selected  

> select add #3.2949

3 models selected  

> select add #3.2392

4 models selected  
Drag select of 3285, 89 of 360 triangles, 3460, 76 of 232 triangles, 3526, 173
of 244 triangles, 3031, 145 of 204 triangles, 1918, 93 of 168 triangles, 3281,
5200, 109 of 120 triangles, 3920, 16 of 56 triangles  
Drag select of 5075, 19 of 676 triangles, 2860, 43 of 220 triangles, 3786,
3782, 3666, 158 of 160 triangles, 3780, 3462, 119 of 120 triangles, 3527,
4054, 3867  

> select add #3.1960

23 models selected  

> select add #3.1598

24 models selected  
Drag select of 4827, 5 of 1132 triangles, 4016, 137 of 292 triangles, 3027, 77
of 228 triangles, 1450, 30 of 184 triangles, 3781, 168 of 184 triangles, 3721,
71 of 124 triangles, 3864, 3524, 3593  

> select add #3.1844

34 models selected  
Drag select of 1338, 285 of 356 triangles, 3390, 5 of 340 triangles, 1267, 94
of 328 triangles, 1339, 46 of 228 triangles, 2007, 72 of 200 triangles, 3480,
76 of 176 triangles, 1789, 69 of 136 triangles, 1861, 2876, 32 of 80
triangles, 5256, 18 of 170564 triangles, 1 423-apo-J55_sharpenmap.mrc  

> select subtract #3.1

45 models selected  

> select add #3.1900

44 models selected  

> select subtract #3.1001

43 models selected  

> select subtract #3.1900

42 models selected  
Drag select of 5228, 301 of 452 triangles, 3627, 242 of 352 triangles, 2604,
72 of 332 triangles, 2330, 38 of 224 triangles, 5198, 150 of 252 triangles,
3560, 9 of 232 triangles, 3894, 94 of 112 triangles, 3946, 12 of 80 triangles,
3152, 5 of 80 triangles  

> select add #3.2323

52 models selected  

> select add #3.1008

53 models selected  

> select add #3.2711

54 models selected  
Drag select of 1370, 50 of 160 triangles, 1444, 1910, 1090, 111 of 120
triangles  

> select add #3.1605

59 models selected  

> select add #3.1730

60 models selected  
Drag select of 3531, 58 of 80 triangles  
Drag select of 2503, 76 of 80 triangles  
Drag select of 1406, 177 of 296 triangles, 1945, 59 of 204 triangles, 2111,
162 of 180 triangles, 2975, 163 of 180 triangles, 1712, 81 of 192 triangles  
Grouped 67 regions  
Drag select of 2334, 258 of 320 triangles, 5206, 36 of 316 triangles, 3158, 41
of 292 triangles, 5176, 64 of 292 triangles, 2024, 3570, 87 of 180 triangles,
2901, 3075, 2607, 3333, 2904, 124 of 144 triangles, 3493, 7 of 100 triangles,
2815, 16 of 56 triangles  

> select add #3.2742

15 models selected  

> select add #3.1828

16 models selected  

> select add #3.1829

17 models selected  

> select add #3.1878

18 models selected  

> select add #3.2585

19 models selected  

> select add #3.2338

20 models selected  

> select add #3.2502

21 models selected  

> select add #3.2993

22 models selected  

> select add #3.1949

23 models selected  

> select add #3.1797

24 models selected  

> select add #3.1389

25 models selected  

> select add #3.2365

26 models selected  
Drag select of 3387, 51 of 80 triangles, 3203, 40 of 80 triangles  

> select add #3.1951

29 models selected  

> select add #3.2942

30 models selected  

> select add #3.1792

31 models selected  

> select add #3.1380

32 models selected  

> select add #3.1842

33 models selected  

> select add #3.1506

34 models selected  

> select add #3.2016

35 models selected  

> select add #3.2091

36 models selected  

> select add #3.1662

37 models selected  

> select add #3.1991

38 models selected  

> select add #3.1582

39 models selected  

> select add #3.2135

40 models selected  

> select add #3.1889

41 models selected  

> select add #3.2941

42 models selected  
Drag select of 2286, 57 of 220 triangles, 2932, 58 of 188 triangles, 1198, 95
of 180 triangles, 1662, 77 of 168 triangles, 2629, 64 of 112 triangles  

> select add #3.1845

48 models selected  

> select add #3.2069

49 models selected  

> select add #3.2374

50 models selected  

> select add #3.2442

51 models selected  
Drag select of 5039, 340 of 620 triangles, 5160, 611 of 636 triangles, 2838,
214 of 348 triangles, 1522, 962, 51 of 240 triangles, 2840, 1051, 114 of 192
triangles, 2217, 50 of 168 triangles, 2220, 2468, 38 of 148 triangles, 1908,
1826, 2756, 6 of 112 triangles, 1909, 2626, 1600, 2150, 5254, 65 of 170288
triangles, 1 423-apo-J55_sharpenmap.mrc  

> select subtract #3.2

68 models selected  
Grouped 66 regions  
Drag select of 1948, 199 of 208 triangles, 3896, 73 of 168 triangles  

> select add #3.2435

4 models selected  

> select add #3.2164

5 models selected  
Drag select of 2775, 77 of 188 triangles, 2483  

> select add #3.1575

8 models selected  
Drag select of 2076, 199 of 256 triangles, 1685, 126 of 144 triangles, 3197,
100 of 136 triangles, 2490, 58 of 80 triangles  

> select add #3.2600

11 models selected  

> select add #3.2154

12 models selected  

> select add #3.2927

13 models selected  

> select add #3.2673

14 models selected  

> select add #3.1451

15 models selected  

> select add #3.2403

16 models selected  

> select add #3.2945

17 models selected  

> select add #3.1947

18 models selected  

> select add #3.2405

19 models selected  

> select add #3.1719

20 models selected  

> select add #3.2995

21 models selected  

> select add #3.2442

22 models selected  

> select add #3.2865

23 models selected  

> select add #3.2710

24 models selected  

> select add #3.2073

25 models selected  

> select add #3.1245

26 models selected  

> select add #3.1187

27 models selected  

> select add #3.1912

28 models selected  

> select add #3.1923

29 models selected  

> select add #3.1589

30 models selected  

> select add #3.2020

31 models selected  

> select add #3.1982

32 models selected  

> select add #3.2837

33 models selected  

> select add #3.2938

34 models selected  

> select add #3.1629

35 models selected  

> select add #3.2565

36 models selected  

> select add #3.1989

37 models selected  

> select subtract #3.1989

36 models selected  

> select subtract #3.2565

35 models selected  

> select add #3.2372

36 models selected  

> select add #3.2250

37 models selected  

> select add #3.2902

38 models selected  

> select add #3.2599

39 models selected  

> select add #3.2220

40 models selected  

> select add #3.2289

41 models selected  

> select add #3.2346

42 models selected  

> select add #3.1968

43 models selected  

> select add #3.1532

44 models selected  

> select subtract #3.1532

43 models selected  

> select add #3.2746

44 models selected  

> select add #3.2796

45 models selected  

> select add #3.2107

46 models selected  

> select add #3.2619

47 models selected  

> select add #3.2417

48 models selected  

> select add #3.2321

49 models selected  

> select add #3.2322

50 models selected  

> select add #3.1604

51 models selected  

> select subtract #3.1604

50 models selected  

> select subtract #3.2322

49 models selected  

> select add #3.1979

50 models selected  

> select add #3.1373

51 models selected  

> select add #3.1272

52 models selected  
Grouped 52 regions  

> save "D:/File/PHD_related_work/423-apo 图/423-apo-map-
> ABCD-8_wuzhishuangcheng.cxs"

> select clear

[Repeated 1 time(s)]

> select #1

2 models selected  

> select clear

Showing 1437 region surfaces  

> select clear

> select #3.6

1 model selected  

> select #3.4

1 model selected  

> hide #!3 models

> select clear

> show #!3 models

> select add #3.5

1 model selected  
Grouped 1 regions  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select clear

Showing 1437 region surfaces  

> select #3.6

1 model selected  

> select clear

> select #3.4

1 model selected  

> select add #3.5

2 models selected  

> select add #3.851

3 models selected  

> select subtract #3.851

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.364

2 models selected  

> select add #3.632

3 models selected  

> select add #3.694

4 models selected  

> select add #3.190

5 models selected  
Grouped 5 regions  

> hide #!3 models

> show #!3 models

> select add #3.851

2 models selected  

> select add #3.1029

3 models selected  

> select add #3.1001

4 models selected  

> select add #3.831

5 models selected  

> select add #3.1288

6 models selected  

> select add #3.983

7 models selected  

> select add #3.1114

8 models selected  

> select add #3.953

9 models selected  

> select add #3.1148

10 models selected  

> select add #3.1241

11 models selected  

> select add #3.1264

12 models selected  

> select add #3.1091

13 models selected  
Grouped 13 regions  

> select add #3.480

2 models selected  

> select add #3.1156

3 models selected  
Grouped 3 regions  

> hide #!3 models

> show #!3 models

> select add #3.2215

2 models selected  

> select add #3.1291

3 models selected  

> select add #3.969

4 models selected  

> select add #3.913

5 models selected  

> select add #3.907

6 models selected  

> select add #3.1778

7 models selected  

> select add #3.1221

8 models selected  

> select add #3.2213

9 models selected  

> select add #3.1533

10 models selected  

> select subtract #3.1291

9 models selected  

> select add #3.1291

10 models selected  

> select add #3.724

11 models selected  

> select add #3.1498

12 models selected  

> select add #3.874

13 models selected  

> select add #3.2052

14 models selected  

> select add #3.1238

15 models selected  

> select add #3.1567

16 models selected  
Grouped 16 regions  

> hide #!3 models

> show #!3 models

> volume #1 level 0.73

> hide #!3 models

> show #!3 models

> select add #3.1482

2 models selected  

> select add #3.1118

3 models selected  

> select add #3.1715

4 models selected  

> select add #3.2590

5 models selected  

> select add #3.1643

6 models selected  

> select add #3.1852

7 models selected  

> select add #3.1841

8 models selected  

> select add #3.2212

9 models selected  

> select add #3.1090

10 models selected  

> select add #3.275

11 models selected  
Grouped 11 regions  

> hide #!3 models

> show #!3 models

> select add #3.911

2 models selected  

> select add #3.178

3 models selected  

> select add #3.1961

4 models selected  

> select add #3.619

5 models selected  

> select add #3.1398

6 models selected  

> select add #3.1212

7 models selected  

> select add #3.2025

8 models selected  

> select add #3.2769

9 models selected  

> select add #3.2898

10 models selected  

> select add #3.158

11 models selected  

> select add #3.1687

12 models selected  

> select add #3.1619

13 models selected  

> select add #3.2507

14 models selected  

> select add #3.1630

15 models selected  

> select add #3.2546

18 models selected  
Grouped 16 regions  

> hide #!3 models

> show #!3 models

> select add #3.1320

2 models selected  

> select add #3.1301

3 models selected  

> select add #3.1820

4 models selected  

> select add #3.1527

5 models selected  

> select add #3.2163

6 models selected  

> select add #3.1402

7 models selected  

> select add #3.1846

8 models selected  

> select add #3.1426

9 models selected  

> select add #3.1419

10 models selected  

> select add #3.1882

11 models selected  

> select add #3.1393

12 models selected  

> select add #3.1826

13 models selected  

> select add #3.2925

14 models selected  

> select add #3.2739

15 models selected  

> select add #3.2623

16 models selected  

> select add #3.2026

17 models selected  

> select add #3.2802

18 models selected  

> select add #3.2430

19 models selected  

> select add #3.1915

20 models selected  

> select add #3.2634

21 models selected  

> select add #3.2756

22 models selected  

> select add #3.2400

23 models selected  

> select add #3.2896

24 models selected  

> select add #3.2545

25 models selected  

> select add #3.1777

26 models selected  

> select add #3.1953

27 models selected  

> select add #3.2630

28 models selected  

> select add #3.2138

29 models selected  

> select add #3.1332

30 models selected  
Grouped 30 regions  

> hide #!3 models

> show #!3 models

> select add #3.402

2 models selected  

> select add #3.975

3 models selected  

> select add #3.771

4 models selected  

> select add #3.1364

5 models selected  

> select add #3.773

6 models selected  

> select add #3.1474

7 models selected  

> select add #3.2324

8 models selected  

> select add #3.2060

9 models selected  

> select add #3.1344

10 models selected  

> select add #3.1055

11 models selected  

> select add #3.1298

12 models selected  

> select add #3.1059

13 models selected  

> select add #3.1580

14 models selected  

> select add #3.1964

15 models selected  
Grouped 15 regions  

> hide #!3 models

> show #!3 models

> select add #3.755

2 models selected  

> select add #3.806

3 models selected  

> select add #3.684

4 models selected  

> select add #3.811

5 models selected  

> select add #3.1125

6 models selected  
Grouped 6 regions  

> hide #!3 models

> show #!3 models

> select add #3.1006

2 models selected  

> select add #3.1348

3 models selected  

> select add #3.1633

4 models selected  

> select add #3.998

5 models selected  

> select add #3.944

6 models selected  

> select subtract #3.998

5 models selected  

> select add #3.1270

6 models selected  

> select subtract #3.1270

5 models selected  

> select add #3.1270

6 models selected  

> select add #3.545

7 models selected  

> select subtract #3.545

6 models selected  

> select add #3.554

7 models selected  
Grouped 7 regions  

> hide #!3 models

> show #!3 models

> select add #3.545

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.1121

2 models selected  

> select subtract #3.1121

1 model selected  

> select add #3.1457

2 models selected  

> select add #3.2830

3 models selected  

> select add #3.1047

4 models selected  
Grouped 4 regions  

> hide #!3 models

> show #!3 models

> select add #3.1479

2 models selected  

> select add #3.2519

3 models selected  

> select add #3.1231

4 models selected  

> select add #3.2577

5 models selected  
Grouped 5 regions  

> hide #!3 models

> show #!3 models

> select add #3.1877

2 models selected  

> select add #3.1313

3 models selected  

> select add #3.1441

4 models selected  

> select add #3.1061

5 models selected  

> select add #3.2445

6 models selected  

> select add #3.1913

7 models selected  

> select add #3.1416

8 models selected  

> select add #3.2750

9 models selected  

> select add #3.1178

10 models selected  

> select add #3.1043

11 models selected  
Grouped 11 regions  

> hide #!3 models

> show #!3 models

> select add #3.1536

2 models selected  

> select add #3.2547

3 models selected  

> select add #3.1428

4 models selected  

> select add #3.1433

5 models selected  
Grouped 5 regions  

> hide #!3 models

> show #!3 models

> select add #3.1201

2 models selected  

> select add #3.705

3 models selected  

> select add #3.1814

4 models selected  
Grouped 4 regions  

> hide #!3 models

> show #2 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> select clear

> hide #2 models

> show #!3 models

> select add #3.1491

1 model selected  

> select add #3.2311

2 models selected  
Grouped 2 regions  

> select clear

[Repeated 1 time(s)]

> select #1

2 models selected  
Showing 1298 region surfaces  

> select #3.6

1 model selected  

> select clear

> select add #3.1334

1 model selected  

> select add #3.2810

2 models selected  

> select add #3.2376

3 models selected  
Grouped 3 regions  

> select add #3.4

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select clear

> hide #!3 models

> show #!3 models

> select clear

Showing 1295 region surfaces  

> select #3.6

1 model selected  

> select add #3.4

2 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1135

3 models selected  

> select add #3.879

4 models selected  

> select add #3.39

5 models selected  

> select add #3.148

6 models selected  

> select add #3.503

7 models selected  

> select subtract #3.503

6 models selected  

> select add #3.503

7 models selected  

> select subtract #3.148

6 models selected  

> select subtract #3.503

5 models selected  

> select add #3.503

6 models selected  
Grouped 6 regions  

> select add #3.148

2 models selected  
Grouped 2 regions  

> select add #3.1335

4 models selected  

> select add #3.2011

5 models selected  

> select add #3.2345

6 models selected  

> select add #3.2500

7 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1377

8 models selected  

> select add #3.2397

9 models selected  
Grouped 7 regions  

> hide #!3 models

> select clear

> show #2 models

> save "D:/File/PHD_related_work/423-apo 图/423-apo-A.cxs"

——— End of log from Wed Feb 1 19:58:45 2023 ———

opened ChimeraX session  
Showing 423-apo-J55_sharpenmap.seg - 1283 regions, 1283 surfaces  

> select add #3.1283

1 model selected  

> select subtract #3.1283

Nothing selected  

> select add #3.1283

1 model selected  
Ungrouped to 7 regions  
Ungrouped to 2 regions  
Ungrouped to 8 regions  

> select clear

> undo

> select clear

> save "D:/File/PHD_related_work/423-apo 图/423-apo-A.cxs"

> select clear

[Repeated 1 time(s)]

> select #3.1296

1 model selected  

> hide #!3 models

> show #!3 models

> select add #3.1279

2 models selected  

> select add #3.42

3 models selected  

> select add #3.47

4 models selected  

> select add #3.1282

5 models selected  

> select add #3.899

6 models selected  

> select add #3.990

7 models selected  

> select add #3.989

8 models selected  

> select add #3.1008

9 models selected  

> select add #3.1196

10 models selected  

> select add #3.1091

11 models selected  

> select add #3.992

12 models selected  

> select add #3.1052

13 models selected  

> select add #3.1268

14 models selected  

> select subtract #3.1091

13 models selected  

> select add #3.1091

14 models selected  
Grouped 14 regions  
Ungrouped to 14 regions  

> select clear

> select #3.47

1 model selected  

> select #3.1279

1 model selected  

> select clear

[Repeated 1 time(s)]

> select #3.47

1 model selected  

> select add #3.990

2 models selected  

> select add #3.1091

3 models selected  

> select add #3.1035

4 models selected  

> select add #3.1019

5 models selected  

> select add #3.1030

6 models selected  

> select add #3.1031

7 models selected  

> select add #3.1015

8 models selected  

> select add #3.1036

9 models selected  

> select add #3.1025

10 models selected  

> select add #3.1026

11 models selected  

> select subtract #3.990

10 models selected  

> select subtract #3.1091

9 models selected  

> select add #3.1091

10 models selected  

> select add #3.899

11 models selected  

> select add #3.1008

12 models selected  

> select add #3.991

13 models selected  

> select add #3.1268

14 models selected  

> select add #3.992

15 models selected  

> select add #3.998

16 models selected  

> select add #3.1052

17 models selected  

> select add #3.1269

18 models selected  

> select add #3.1088

19 models selected  

> select add #3.921

20 models selected  

> select add #3.933

21 models selected  

> select add #3.1194

22 models selected  

> select add #3.1070

23 models selected  

> select add #3.1049

24 models selected  

> select add #3.1076

25 models selected  

> select add #3.1272

26 models selected  

> select add #3.754

27 models selected  

> select add #3.599

28 models selected  

> select add #3.274

29 models selected  

> select subtract #3.992

28 models selected  

> select add #3.992

29 models selected  
Grouped 29 regions  

> hide #!3 models

> show #!3 models

> select add #3.990

2 models selected  

> select add #3.1058

3 models selected  

> select add #3.896

4 models selected  

> select add #3.1074

5 models selected  

> select add #3.1136

6 models selected  

> select add #3.1176

7 models selected  

> select add #3.1083

8 models selected  

> select add #3.678

9 models selected  

> select add #3.1119

10 models selected  

> select add #3.1178

11 models selected  

> select add #3.1177

12 models selected  

> select add #3.1169

13 models selected  
Grouped 13 regions  

> hide #!3 models

> show #!3 models

> select add #3.937

2 models selected  

> select add #3.1196

3 models selected  

> select add #3.1110

4 models selected  

> select add #3.1258

5 models selected  

> select add #3.1251

6 models selected  

> select subtract #3.1258

5 models selected  

> select add #3.1108

6 models selected  

> select add #3.638

7 models selected  

> select add #3.842

8 models selected  

> select add #3.623

9 models selected  

> select add #3.1233

10 models selected  

> select add #3.1098

11 models selected  

> select add #3.1079

12 models selected  

> select add #3.1146

13 models selected  

> select add #3.1201

14 models selected  

> select add #3.1282

15 models selected  

> select add #3.932

16 models selected  

> select add #3.963

17 models selected  
Grouped 17 regions  

> hide #!3 models

> show #!3 models

> select add #3.720

2 models selected  

> select add #3.612

3 models selected  

> select add #3.1165

4 models selected  

> select add #3.916

5 models selected  
Grouped 5 regions  

> select add #3.1152

2 models selected  

> select add #3.1217

3 models selected  

> select add #3.536

4 models selected  

> select add #3.1159

5 models selected  

> select add #3.596

6 models selected  
Grouped 6 regions  

> hide #!3 models

> show #!3 models

> select add #3.1190

2 models selected  

> select add #3.1060

3 models selected  

> select add #3.951

4 models selected  

> select add #3.497

5 models selected  

> select add #3.1239

6 models selected  

> select add #3.374

7 models selected  

> select add #3.465

8 models selected  

> select add #3.679

9 models selected  
Grouped 9 regions  

> hide #!3 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> show #!3 models

> select add #3.1127

2 models selected  

> select add #3.1103

3 models selected  

> select add #3.1065

4 models selected  

> select add #3.1255

5 models selected  

> select add #3.770

6 models selected  
Grouped 6 regions  

> hide #!3 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> show #!3 models

> select add #3.1182

2 models selected  

> select add #3.804

3 models selected  

> select add #3.1055

4 models selected  
Grouped 4 regions  

> select add #3.1172

2 models selected  
Grouped 2 regions  

> hide #!3 models

> hide #!1 models

> show #!1 models

> select clear

> hide #!1 models

> show #!1 models

> select clear

> show #!3 models

> select add #3.366

1 model selected  
Grouped 1 regions  

> hide #!3 models

> hide #!1 models

> show #!1 models

> show #!3 models

> select add #3.1167

2 models selected  

> select add #3.1253

3 models selected  

> select add #3.614

4 models selected  
Grouped 4 regions  

> hide #!3 models

> show #!3 models

> select add #3.1224

2 models selected  

> select add #3.1231

3 models selected  

> select add #3.444

4 models selected  
Grouped 4 regions  

> hide #!3 models

> show #!3 models

> select add #3.293

2 models selected  

> select add #3.1122

3 models selected  

> select add #3.373

4 models selected  

> select add #3.295

5 models selected  

> select add #3.370

6 models selected  
Grouped 6 regions  

> hide #!3 models

> show #!3 models

> select add #3.1225

4 models selected  

> select add #3.560

5 models selected  

> select add #3.617

6 models selected  

> select add #3.610

7 models selected  

> select add #3.1294

8 models selected  

> select add #3.1221

9 models selected  

> select add #3.400

10 models selected  

> select add #3.1228

11 models selected  

> select add #3.494

12 models selected  

> select add #3.447

13 models selected  

> select add #3.341

14 models selected  
Grouped 12 regions  
Ungrouped to 12 regions  

> select #1

2 models selected  
Got 1134 regions after grouping by connections  
Ungrouped to 338 regions  

> select #3.1147

1 model selected  

> select clear

> hide #!3 models

> show #!3 models

> select add #3.1121

1 model selected  

> select subtract #3.1121

Nothing selected  

> select add #3.728

1 model selected  

> select add #3.1121

2 models selected  

> select add #3.874

3 models selected  

> select add #3.1268

4 models selected  

> select subtract #3.874

3 models selected  

> select add #3.1420

4 models selected  

> select add #3.790

5 models selected  

> select add #3.293

6 models selected  

> select subtract #3.1268

5 models selected  
Grouped 5 regions  

> select subtract #3.42

Nothing selected  

> select #3.42

1 model selected  

> select add #3.1064

2 models selected  

> select subtract #3.42

1 model selected  

> select add #3.42

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.1268

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.1004

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.1354

2 models selected  

> select add #3.1283

3 models selected  

> select add #3.46

4 models selected  

> select add #3.1291

5 models selected  
Grouped 5 regions  

> hide #!3 models

> save "D:/File/PHD_related_work/423-apo 图/423-apo-AB.cxs"

> hide #!1 models

> show #!3 models

> show #!1 models

> hide #!3 models

> hide #!1 models

> show #!1 models

> show #!3 models

> hide #!1 models

Showing 1292 region surfaces  

> select clear

[Repeated 1 time(s)]

> select #3.1147

1 model selected  

> select clear

> select #3.42

1 model selected  

> select clear

> select #3.1111

1 model selected  

> select clear

> show #!1 models

> hide #!3 models

> select #1

2 models selected  

> show #!3 models

> hide #!3 models

> select clear

> show #!3 models

> hide #!1 models

> show #!1 models

> hide #!3 models

> show #!3 models

> select add #3.1114

1 model selected  

> select add #3.1315

2 models selected  

> select add #3.1316

3 models selected  

> select add #3.1115

4 models selected  

> select add #3.53

5 models selected  

> select add #3.1359

6 models selected  

> select add #3.62

7 models selected  

> select subtract #3.1114

6 models selected  

> select add #3.52

7 models selected  

> select add #3.1114

8 models selected  
Grouped 8 regions  

> hide #!3 models

> show #!3 models

> select add #3.1203

2 models selected  

> select add #3.807

3 models selected  

> select add #3.878

4 models selected  

> select add #3.1302

5 models selected  

> select add #3.1301

6 models selected  

> select add #3.1312

7 models selected  

> select add #3.1311

8 models selected  

> select add #3.1258

9 models selected  

> select add #3.987

10 models selected  

> select add #3.1196

11 models selected  

> select add #3.1259

12 models selected  

> select add #3.1136

13 models selected  

> select add #3.890

14 models selected  

> select add #3.1221

15 models selected  

> select add #3.1438

16 models selected  

> select add #3.1437

17 models selected  

> select add #3.1021

18 models selected  

> select add #3.1038

19 models selected  

> select add #3.1020

20 models selected  

> select add #3.1251

21 models selected  

> select add #3.1350

22 models selected  

> select add #3.1163

23 models selected  

> select add #3.1162

24 models selected  

> select subtract #3.1196

23 models selected  

> select add #3.1196

24 models selected  

> select add #3.1371

25 models selected  

> select add #3.1365

26 models selected  

> select add #3.1366

27 models selected  

> select add #3.996

28 models selected  
Grouped 28 regions  

> hide #!3 models

> show #!3 models

> select add #3.1253

2 models selected  

> select add #3.1002

3 models selected  

> select add #3.959

4 models selected  

> select add #3.1309

5 models selected  

> select add #3.986

6 models selected  

> select add #3.977

7 models selected  

> select add #3.1352

8 models selected  

> select add #3.1351

9 models selected  

> select add #3.962

10 models selected  

> select add #3.930

11 models selected  

> select add #3.900

12 models selected  

> select add #3.876

13 models selected  

> select add #3.1250

14 models selected  

> select add #3.1242

15 models selected  

> select add #3.1165

16 models selected  

> select add #3.978

17 models selected  

> select add #3.1034

18 models selected  

> select add #3.1029

19 models selected  

> select add #3.1424

20 models selected  

> select subtract #3.1029

19 models selected  

> select add #3.1024

20 models selected  

> select add #3.1039

21 models selected  
Grouped 21 regions  

> hide #!3 models

> save "D:/File/PHD_related_work/423-apo 图/423-apo-ABC半.cxs"

——— End of log from Wed Feb 1 21:00:53 2023 ———

opened ChimeraX session  
Showing 423-apo-J55_sharpenmap.seg - 1238 regions, 1238 surfaces  

> select #3.1235

1 model selected  

> select clear

> select #3.1238

1 model selected  

> select add #3.25

2 models selected  

> select add /C:609

9 atoms, 8 bonds, 1 residue, 3 models selected  

> select add #3.36

9 atoms, 8 bonds, 1 residue, 4 models selected  

> select add #3.14

9 atoms, 8 bonds, 1 residue, 5 models selected  

> select subtract #3.36

9 atoms, 8 bonds, 1 residue, 4 models selected  
Grouped 3 regions  

> hide #!3 models

> show #!3 models

> select add #3.1200

9 atoms, 8 bonds, 1 residue, 3 models selected  

> select add #3.809

9 atoms, 8 bonds, 1 residue, 4 models selected  

> select add #3.784

9 atoms, 8 bonds, 1 residue, 5 models selected  

> select add #3.1199

9 atoms, 8 bonds, 1 residue, 6 models selected  

> select add #3.778

9 atoms, 8 bonds, 1 residue, 7 models selected  

> select add #3.1170

9 atoms, 8 bonds, 1 residue, 8 models selected  

> select add #3.1177

9 atoms, 8 bonds, 1 residue, 9 models selected  

> select add #3.779

9 atoms, 8 bonds, 1 residue, 10 models selected  
Grouped 9 regions  

> hide #!3 models

> show #!3 models

> select add #3.1175

9 atoms, 8 bonds, 1 residue, 5 models selected  

> select add #3.865

9 atoms, 8 bonds, 1 residue, 6 models selected  

> select add #3.1237

9 atoms, 8 bonds, 1 residue, 7 models selected  

> select subtract #3.1237

9 atoms, 8 bonds, 1 residue, 6 models selected  

> select add #3.540

9 atoms, 8 bonds, 1 residue, 7 models selected  

> select add #3.521

9 atoms, 8 bonds, 1 residue, 8 models selected  

> select add #3.373

9 atoms, 8 bonds, 1 residue, 9 models selected  

> select add #3.573

9 atoms, 8 bonds, 1 residue, 10 models selected  

> select add #3.1206

9 atoms, 8 bonds, 1 residue, 11 models selected  

> select add #3.314

9 atoms, 8 bonds, 1 residue, 12 models selected  

> select add #3.379

9 atoms, 8 bonds, 1 residue, 13 models selected  

> select add #3.106

9 atoms, 8 bonds, 1 residue, 14 models selected  

> select add #3.177

9 atoms, 8 bonds, 1 residue, 15 models selected  

> select add #3.204

9 atoms, 8 bonds, 1 residue, 16 models selected  

> select subtract #3.540

9 atoms, 8 bonds, 1 residue, 15 models selected  

> select add #3.519

9 atoms, 8 bonds, 1 residue, 16 models selected  

> select add #3.442

9 atoms, 8 bonds, 1 residue, 17 models selected  
Grouped 14 regions  

> hide #!3 models

> show #!3 models

> select add #3.803

9 atoms, 8 bonds, 1 residue, 5 models selected  

> select add #3.540

9 atoms, 8 bonds, 1 residue, 6 models selected  

> select add #3.727

9 atoms, 8 bonds, 1 residue, 7 models selected  

> select add #3.932

9 atoms, 8 bonds, 1 residue, 8 models selected  

> select subtract #3.540

9 atoms, 8 bonds, 1 residue, 7 models selected  

> select add #3.444

9 atoms, 8 bonds, 1 residue, 8 models selected  
Grouped 5 regions  

> hide #!3 models

> show #!3 models

> select add #3.726

9 atoms, 8 bonds, 1 residue, 5 models selected  

> select add #3.203

9 atoms, 8 bonds, 1 residue, 6 models selected  

> select add #3.316

9 atoms, 8 bonds, 1 residue, 7 models selected  

> select add #3.201

9 atoms, 8 bonds, 1 residue, 8 models selected  

> select add #3.378

9 atoms, 8 bonds, 1 residue, 9 models selected  

> select add #3.636

9 atoms, 8 bonds, 1 residue, 10 models selected  

> select add #3.579

9 atoms, 8 bonds, 1 residue, 11 models selected  

> select add #3.540

9 atoms, 8 bonds, 1 residue, 12 models selected  

> select add #3.610

9 atoms, 8 bonds, 1 residue, 13 models selected  

> select add #3.672

9 atoms, 8 bonds, 1 residue, 14 models selected  

> select add #3.747

9 atoms, 8 bonds, 1 residue, 15 models selected  

> select add #3.801

9 atoms, 8 bonds, 1 residue, 16 models selected  

> select add #3.839

9 atoms, 8 bonds, 1 residue, 17 models selected  
Grouped 14 regions  

> hide #!3 models

> show #!3 models

> select add /C:100

17 atoms, 15 bonds, 2 residues, 4 models selected  

> select subtract /C:100

9 atoms, 8 bonds, 1 residue, 2 models selected  

> select add /C:100

17 atoms, 15 bonds, 2 residues, 4 models selected  

> select add #3.639

17 atoms, 15 bonds, 2 residues, 5 models selected  

> select add #3.763

17 atoms, 15 bonds, 2 residues, 6 models selected  

> select add #3.744

17 atoms, 15 bonds, 2 residues, 7 models selected  

> select subtract #3.763

17 atoms, 15 bonds, 2 residues, 4 models selected  

> select subtract #3.744

17 atoms, 15 bonds, 2 residues, 3 models selected  

> select add #3.744

17 atoms, 15 bonds, 2 residues, 6 models selected  

> select add #3.763

17 atoms, 15 bonds, 2 residues, 7 models selected  
Grouped 4 regions  

> hide #!3 models

> show #!3 models

> select add #3.571

17 atoms, 15 bonds, 2 residues, 5 models selected  

> select add #3.605

17 atoms, 15 bonds, 2 residues, 6 models selected  

> select add #3.516

17 atoms, 15 bonds, 2 residues, 7 models selected  

> select add #3.439

17 atoms, 15 bonds, 2 residues, 8 models selected  

> select add #3.721

17 atoms, 15 bonds, 2 residues, 9 models selected  

> select add #3.633

17 atoms, 15 bonds, 2 residues, 10 models selected  
Grouped 7 regions  

> hide #!3 models

> show #!3 models

> select add #3.261

17 atoms, 15 bonds, 2 residues, 3 models selected  

> select add #3.149

17 atoms, 15 bonds, 2 residues, 4 models selected  

> select add #3.1164

17 atoms, 15 bonds, 2 residues, 5 models selected  

> select add #3.1193

17 atoms, 15 bonds, 2 residues, 8 models selected  

> select add #3.688

17 atoms, 15 bonds, 2 residues, 9 models selected  

> select add #3.609

17 atoms, 15 bonds, 2 residues, 10 models selected  

> select add #3.471

17 atoms, 15 bonds, 2 residues, 11 models selected  

> select add #3.1204

17 atoms, 15 bonds, 2 residues, 12 models selected  

> select add #3.725

17 atoms, 15 bonds, 2 residues, 13 models selected  

> select add #3.966

17 atoms, 15 bonds, 2 residues, 14 models selected  

> select add #3.566

17 atoms, 15 bonds, 2 residues, 15 models selected  

[deleted stuff to fit within tickets limits]

> hide #!3 models

> show #!3 models

> select add #3.1647

6 models selected  

> select add #3.1648

7 models selected  

> select add #3.1188

8 models selected  

> select add #3.340

9 models selected  

> select add #3.557

10 models selected  
Grouped 10 regions  

> hide #!3 models

> show #!3 models

Showing 1658 region surfaces  

> select clear

> select #3.1730

1 model selected  

> select clear

> select #3.83

1 model selected  

> select add #3.158

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.1675

2 models selected  

> select add #3.1415

3 models selected  

> select add #3.211

4 models selected  

> select add #3.259

5 models selected  

> select add #3.1455

6 models selected  

> select add #3.530

7 models selected  

> select add #3.549

8 models selected  

> select add #3.532

9 models selected  

> select add #3.1657

10 models selected  

> select add #3.1161

11 models selected  

> select add #3.1736

12 models selected  

> select subtract #3.1736

11 models selected  
Grouped 11 regions  

> hide #!3 models

> show #!3 models

> select add #3.1646

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.1649

2 models selected  

> select add #3.700

3 models selected  

> select add #3.719

4 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1454

5 models selected  
Grouped 5 regions  

> hide #!3 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> select clear

> select #1

2 models selected  

> show #!3 models

> select clear

> select #3.1736

1 model selected  

> select add #3.1056

2 models selected  

> select add #3.977

3 models selected  

> select add #3.964

4 models selected  

> select add #3.1014

5 models selected  

> select clear

> select #3.1736

1 model selected  

> select add #3.1056

2 models selected  

> select add #3.964

3 models selected  

> select add #3.977

4 models selected  

> select add #3.967

5 models selected  

> select add #3.952

6 models selected  

> select add #3.897

7 models selected  

> select add #3.896

8 models selected  

> select add #3.932

9 models selected  

> select add #3.944

10 models selected  

> select add #3.942

11 models selected  

> select add #3.814

12 models selected  

> select add #3.741

13 models selected  

> select add #3.844

14 models selected  

> select add #3.857

15 models selected  

> select add #3.914

16 models selected  

> select subtract #3.857

15 models selected  

> select add #3.829

16 models selected  

> select add #3.875

17 models selected  

> select add #3.857

18 models selected  

> select add #3.1018

19 models selected  

> select add #3.803

20 models selected  

> select add #3.504

21 models selected  

> select add #3.868

22 models selected  

> select add #3.635

23 models selected  

> select add #3.908

24 models selected  

> select add #3.1215

25 models selected  

> select add #3.973

26 models selected  

> select add #3.978

27 models selected  

> select subtract #3.978

26 models selected  
Grouped 26 regions  

> hide #!3 models

> show #!3 models

> select add #3.1014

2 models selected  
Grouped 2 regions  

> select add #3.1216

2 models selected  

> select add #3.824

3 models selected  

> select add #3.601

4 models selected  

> select add #3.1092

5 models selected  

> select add #3.584

6 models selected  

> select add #3.739

7 models selected  

> select subtract #3.739

6 models selected  

> select add #3.667

7 models selected  

> select add #3.739

8 models selected  

> select add #3.488

9 models selected  

> select add #3.714

10 models selected  

> select add #3.490

11 models selected  

> select add #3.766

12 models selected  

> select add #3.1021

13 models selected  

> select add #3.765

14 models selected  

> select add #3.1346

15 models selected  
Grouped 15 regions  

> hide #!3 models

> show #!3 models

> select add #3.436

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select add #3.1164

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.770

2 models selected  

> select add #3.747

3 models selected  

> select add #3.1035

4 models selected  
Grouped 4 regions  

> hide #!3 models

> show #!3 models

> select add #3.729

2 models selected  

> select clear

> select #1

2 models selected  

> select add #3.202

3 models selected  

> select add #3.1270

2 models selected  

> select add #3.622

3 models selected  

> select add #3.832

4 models selected  

> select clear

Showing 1597 region surfaces  

> select clear

[Repeated 1 time(s)]

> hide #!3 models

> show #!3 models

> select add #3.1566

1 model selected  

> select add #3.903

2 models selected  

> select add #3.1634

3 models selected  

> select add #3.1719

4 models selected  

> select add #3.1505

5 models selected  

> select add #3.1325

6 models selected  

> select subtract #3.903

5 models selected  

> select subtract #3.1719

4 models selected  

> select add #3.1458

5 models selected  
Grouped 5 regions  

> select add #3.83

2 models selected  
Grouped 2 regions  

> select add #3.1467

2 models selected  

> select add #3.1456

3 models selected  

> select add #3.1565

4 models selected  

> select subtract #3.1565

5 models selected  

> select add #3.831

6 models selected  
Grouped 4 regions  

> hide #!3 models

> show #!3 models

> select add #3.1620

4 models selected  
Grouped 2 regions  

> select clear

> hide #!3 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> select #1

2 models selected  

> show #!3 models

> select #3.1744

1 model selected  

> select add #3.1734

2 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1735

3 models selected  

> hide #!3 models

> show #!3 models

Grouped 3 regions  

> select add #3.1593

2 models selected  

> select add #3.863

3 models selected  

> select add #3.1589

4 models selected  
Grouped 4 regions  

> hide #!3 models

> show #!3 models

> select add #3.360

2 models selected  

> select add #3.1745

3 models selected  

> select add #3.415

4 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1249

5 models selected  

> select add #3.449

6 models selected  
Grouped 6 regions  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select add #3.1741

4 models selected  

> select subtract #3.1741

3 models selected  

> select add #3.101

4 models selected  

> hide #!3 models

> show #!3 models

> select clear

> select #1

2 models selected  

> select add #3.1578

3 models selected  

> select add #3.1098

4 models selected  

> select add #3.1232

5 models selected  

> select add #3.769

6 models selected  

> select add #3.786

7 models selected  

> select add #3.673

8 models selected  

> select add #3.1577

9 models selected  

> select add #3.676

10 models selected  

> select add #3.522

11 models selected  

> select add #3.1682

12 models selected  

> select add #3.1683

13 models selected  

> select add #3.1482

14 models selected  

> select add #3.815

15 models selected  

> select add #3.820

16 models selected  
Grouped 14 regions  
Ungrouped to 14 regions  
Grouped 14 regions  

> save "D:/File/PHD_related_work/423-apo 图/423-apo-ABCD-1.cxs"

——— End of log from Fri Feb 3 20:10:30 2023 ———

opened ChimeraX session  
Showing 423-apo-J55_sharpenmap.seg - 1565 regions, 1565 surfaces  

> select #3.1207

1 model selected  

> select clear

> select #3.1560

1 model selected  

> select clear

> hide #!1 models

> show #!1 models

> hide #!3 models

> select #1

2 models selected  

> select clear

> show #!3 models

> select #3.1518

1 model selected  

> select #3.1482

1 model selected  

> select #3.1482

1 model selected  

> select add #3.1518

2 models selected  

> select add #3.1538

3 models selected  

> select add #3.1562

4 models selected  

> select add #3.1500

5 models selected  

> select add #3.1535

6 models selected  

> select add #3.1483

7 models selected  

> select subtract #3.1562

6 models selected  

> select add #3.1562

7 models selected  
Grouped 7 regions  

> hide #!3 models

> show #!3 models

> select add #3.852

2 models selected  

> select add #3.1388

3 models selected  

> select add #3.1357

4 models selected  

> select add #3.1519

5 models selected  

> select add #3.1054

6 models selected  

> select add #3.1216

7 models selected  

> select add #3.1324

8 models selected  

> select add #3.683

9 models selected  

> select add #3.507

10 models selected  

> select add #3.1327

11 models selected  

> select add #3.1488

12 models selected  

> select add #3.607

13 models selected  

> select add #3.878

14 models selected  

> select add #3.1102

15 models selected  

> select add #3.808

16 models selected  

> select add #3.427

17 models selected  

> select add #3.554

18 models selected  
Grouped 18 regions  

> hide #!3 models

> show #!3 models

> select add #3.769

2 models selected  

> select add #3.990

3 models selected  
Grouped 3 regions  

> hide #!3 models

> show #!3 models

> select clear

> select #3.1561

1 model selected  

> select #1

2 models selected  

> select #1

2 models selected  

> select clear

Showing 1540 region surfaces  

> select #3.427

1 model selected  

> select clear

> select #3.1561

1 model selected  

> select add #3.1484

2 models selected  

> select add #3.1511

3 models selected  

> select add #3.1485

4 models selected  

> select add #3.1458

5 models selected  

> select add #3.1438

6 models selected  

> select add #3.1486

7 models selected  

> select add #3.1379

10 models selected  

> select add #3.1413

11 models selected  

> select clear

> select #3.1561

1 model selected  

> select add #3.1484

2 models selected  

> select add #3.1555

3 models selected  

> select add #3.1511

4 models selected  

> select add #3.1485

5 models selected  

> select add #3.1458

6 models selected  

> select add #3.1512

7 models selected  

> select add #3.1386

8 models selected  

> select add #3.1438

9 models selected  

> select add #3.1486

10 models selected  

> select add #3.1544

11 models selected  

> select add #3.1413

12 models selected  

> select add #3.1439

13 models selected  
Grouped 13 regions  

> select add #3.1379

2 models selected  

> select add #3.1536

3 models selected  

> select add #3.1383

4 models selected  

> select add #3.1326

5 models selected  

> select add #3.1325

6 models selected  

> select add #3.1487

7 models selected  

> select add #3.1105

8 models selected  

> select add #3.850

9 models selected  

> select add #3.809

10 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1112

11 models selected  
Grouped 11 regions  

> select add #3.1248

2 models selected  

> select add #3.1454

3 models selected  

> select add #3.1543

4 models selected  

> select add #3.1531

5 models selected  

> select add #3.1546

6 models selected  

> select add #3.1433

7 models selected  

> select add #3.1506

8 models selected  

> select add #3.1522

9 models selected  

> select add #3.1534

10 models selected  

> select add #3.1499

11 models selected  

> select add #3.1537

12 models selected  

> select add #3.1524

13 models selected  

> select add #3.1471

14 models selected  

> select add #3.1284

15 models selected  

> select add #3.1214

16 models selected  
Grouped 16 regions  

> select add #3.1525

2 models selected  

> select add #3.1510

3 models selected  

> select add #3.1412

4 models selected  

> select add #3.1321

5 models selected  

> select add #3.1183

6 models selected  

> select add #3.686

7 models selected  

> select add #3.1100

10 models selected  

> select add #3.952

11 models selected  

> select add #3.1539

10 models selected  

> select add #3.1550

11 models selected  

> select add #3.1558

12 models selected  

> select add #3.1557

13 models selected  
Grouped 13 regions  

> select clear

> select #3.1564

1 model selected  

> select clear

Showing 1491 region surfaces  

> select #3.1564

1 model selected  

> select #3.507

1 model selected  

> select #3.507

1 model selected  

> select #3.507

1 model selected  

> select clear

> select #3.1564

1 model selected  

> select add #3.427

2 models selected  

> select #3.507

1 model selected  

> select add #3.1430

2 models selected  

> select add #3.1347

3 models selected  

> select add #3.1173

4 models selected  

> select add #3.843

5 models selected  

> select add #3.1346

6 models selected  

> select add #3.1014

7 models selected  

> select add #3.1498

8 models selected  

> select add #3.1497

9 models selected  

> select add #3.108

10 models selected  

> select subtract #3.108

9 models selected  
Grouped 9 regions  

> hide #!3 models

> show #!3 models

> select add #3.807

2 models selected  

> select add #3.987

3 models selected  

> select add #3.682

4 models selected  

> select add #3.423

5 models selected  

> select add #3.722

6 models selected  

> select add #3.806

7 models selected  

> select subtract #3.806

6 models selected  

> select add #3.1469

7 models selected  

> select add #3.1404

8 models selected  
Grouped 8 regions  

> hide #!3 models

> show #!3 models

> select add #3.1137

2 models selected  

> select add #3.503

3 models selected  

> select add #3.422

4 models selected  

> select add #3.199

5 models selected  

> select add #3.224

6 models selected  

> select add #3.152

7 models selected  

> select add #3.225

8 models selected  

> select add #3.343

9 models selected  
Grouped 9 regions  

> hide #!3 models

> show #!3 models

> select add #3.504

2 models selected  

> select add #3.723

3 models selected  

> select add #3.383

4 models selected  

> select add #3.460

5 models selected  

> select add #3.256

6 models selected  

> select add #3.501

7 models selected  

> select add #3.346

8 models selected  

> select add #3.260

9 models selected  

> select add #3.681

10 models selected  
Grouped 10 regions  

> hide #!3 models

> show #!3 models

> select add #3.641

2 models selected  

> select add #3.724

3 models selected  

> select add #3.806

4 models selected  

> select add #3.459

5 models selected  

> select add #3.151

6 models selected  

> select add #3.344

7 models selected  

> select add #3.257

8 models selected  

> select add #3.153

9 models selected  

> select add #3.342

10 models selected  

> select add #3.547

11 models selected  
Grouped 11 regions  

> hide #!3 models

> show #!3 models

> select add #3.721

2 models selected  

> select add #3.678

3 models selected  

> select add #3.1206

4 models selected  

> select subtract #3.1206

3 models selected  

> select add #3.1521

4 models selected  

> select add #3.1515

5 models selected  
Grouped 5 regions  

> hide #!3 models

> show #!3 models

> select add #3.907

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.395

2 models selected  

> select add #3.351

3 models selected  

> select add #3.1104

4 models selected  

> select add #3.307

5 models selected  

> select add #3.207

6 models selected  
Grouped 6 regions  

> select add #3.912

2 models selected  

> select add #3.646

3 models selected  

> select add #3.512

4 models selected  

> select add #3.432

5 models selected  

> select add #3.735

6 models selected  

> select add #3.514

7 models selected  
Grouped 7 regions  

> hide #!3 models

> show #!3 models

> select add #3.306

2 models selected  

> select add #3.272

3 models selected  

> select add #3.435

4 models selected  
Grouped 4 regions  

> hide #!3 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> show #!3 models

> save C:/Users/其玉杰哥/Desktop/423-apo-ABCD-2.cxs

——— End of log from Sun Feb 5 16:22:15 2023 ———

opened ChimeraX session  
Showing 423-apo-J55_sharpenmap.seg - 1430 regions, 1430 surfaces  

> select #3.1403

1 model selected  

> select clear

> select #3.1427

1 model selected  

> select add #3.1403

2 models selected  

> select add #3.1428

3 models selected  

> select add #3.1400

4 models selected  

> select add #3.1263

5 models selected  

> select add #3.1395

6 models selected  

> select add #3.1227

7 models selected  

> select add #3.916

8 models selected  

> select add #3.1059

9 models selected  

> select add #3.1190

10 models selected  

> select add #3.1368

11 models selected  

> select add #3.812

12 models selected  

> select add #3.631

13 models selected  

> select add #3.1381

14 models selected  

> select add #3.975

15 models selected  

> select add #3.1426

16 models selected  

> select subtract #3.1426

15 models selected  
Grouped 15 regions  

QDockWidget failed to find relevant screen info. screenFrom:
QScreen(0x25eea7387a0, name="\\\\\\\\.\\\DISPLAY2") screenTo:
QScreen(0x25eea7387a0, name="\\\\\\\\.\\\DISPLAY2") wdgScreen:
QScreen(0x25eea7387a0, name="\\\\\\\\.\\\DISPLAY2") orgWdgScreen QScreen(0x0)  

QWindowsWindow::setGeometry: Unable to set geometry 606x183-592+1402 (frame:
622x222-600+1371) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY2". Resulting geometry: 606x151-592+1402 (frame:
622x190-600+1371) margins: 8, 31, 8, 8 minimum size: 596x151 maximum size:
524287x151 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=190), mintrack=POINT(x=612, y=190)))  

QDockWidget failed to find relevant screen info. screenFrom:
QScreen(0x25eea7387a0, name="\\\\\\\\.\\\DISPLAY2") screenTo:
QScreen(0x25eea7387a0, name="\\\\\\\\.\\\DISPLAY2") wdgScreen:
QScreen(0x25eea7387a0, name="\\\\\\\\.\\\DISPLAY2") orgWdgScreen QScreen(0x0)  

[Repeated 205 time(s)]Ungrouped to 15 regions  

> select #3.1430

1 model selected  

> select clear

> select #3.1430

1 model selected  

> select add #3.1395

2 models selected  

> select add #3.1407

3 models selected  
Grouped 3 regions  

> select add #3.1337

2 models selected  

> hide #!3 models

> show #!3 models

Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.1134

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select clear

> select #3.1431

1 model selected  

> select add #3.1099

2 models selected  

> select add #3.1427

3 models selected  

> select add #3.1263

4 models selected  
Grouped 4 regions  

> select add #3.1227

2 models selected  

> select add #3.1160

3 models selected  

> select clear

> select #3.1426

1 model selected  

> select #1

2 models selected  

> select clear

Showing 1423 region surfaces  

> select #3.631

1 model selected  

> select #3.1426

1 model selected  

> select add #3.631

2 models selected  

> select #3.1099

1 model selected  

> select clear

Showing 1423 region surfaces  

> select #3.1426

1 model selected  

> select add #3.631

2 models selected  

> select clear

> select #3.1099

1 model selected  

> select add #3.717

2 models selected  

> hide #!3 models

> select clear

[Repeated 1 time(s)]Showing 1423 region surfaces  

> show #!3 models

> select #3.1099

1 model selected  

> select add #3.1429

2 models selected  

> select clear

> select #3.1426

1 model selected  

> select add #3.64

2 models selected  

> select add #3.72

3 models selected  

> select add #3.65

4 models selected  

> select add #3.66

5 models selected  

> select add #3.68

6 models selected  

> select add #3.62

7 models selected  

> select add #3.61

8 models selected  

> select add #3.78

9 models selected  

> select add #3.93

10 models selected  

> select add #3.105

11 models selected  

> hide #!3 models

> show #!3 models

> select add #3.52

12 models selected  

> select add #3.48

13 models selected  

> select add #3.38

14 models selected  

> select add #3.35

15 models selected  

> select add #3.26

16 models selected  

> select add #3.33

17 models selected  

> select add #3.63

18 models selected  

> select subtract #3.63

17 models selected  
Grouped 17 regions  

> select add #3.70

2 models selected  

> select add #3.71

3 models selected  

> select add #3.106

4 models selected  

> select add #3.102

5 models selected  
Grouped 5 regions  

> hide #!3 models

> show #!3 models

> select add #3.669

2 models selected  

> select add #3.708

3 models selected  

> select add #3.697

4 models selected  
Grouped 4 regions  

> hide #!3 models

> show #!3 models

> select add #3.878

2 models selected  

> select add #3.816

3 models selected  

> select add #3.1021

4 models selected  

> select add #3.1020

5 models selected  

> select add #3.751

6 models selected  

> select add #3.717

7 models selected  
Grouped 7 regions  

> select add #3.1350

2 models selected  

> hide #!3 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> show #!3 models

> select add #3.982

3 models selected  

> select add #3.1025

4 models selected  

> select add #3.846

5 models selected  

> select add #3.882

6 models selected  

> select add #3.981

7 models selected  

> select add #3.1129

8 models selected  

> select subtract #3.1129

7 models selected  
Grouped 7 regions  

> hide #!3 models

> show #!3 models

> select add #3.1023

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.1286

4 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1194

5 models selected  

> select subtract #3.1194

4 models selected  

> select clear

Drag select of 361, 20 of 80 triangles, 771, 20 of 144 triangles, 793, 207 of
208 triangles, 964, 1025, 1055, 1093, 1099, 22 of 56 triangles, 1150, 1200,
1249, 1250, 100 of 240 triangles, 1260, 1262, 1322, 1325, 1326, 1327, 1331,
1335, 1375, 1376, 1378, 1379, 1380, 1383, 7 of 56 triangles, 1385, 101 of 136
triangles, 1387, 173 of 184 triangles, 1451, 1455, 1467, 70 of 112 triangles,
1528, 1530, 1532, 1538, 9 of 336 triangles, 1539, 1541, 1542, 1612, 1614,
1616, 1617, 1620, 9 of 144 triangles, 1665, 113 of 136 triangles, 1666, 55 of
104 triangles, 1669, 1672, 1684, 135 of 144 triangles, 1766, 1768, 1769, 1770,
1778, 1779, 1834, 1837, 1847, 70 of 140 triangles, 1916, 1921, 2066, 2070,
2161, 2162, 2164, 12 of 80 triangles, 2166, 2169, 51 of 56 triangles, 2227,
2228, 2232, 2361, 2419, 110 of 176 triangles, 2422, 2424, 2425, 56 of 196
triangles, 2426, 2478, 2479, 102 of 136 triangles, 2635, 2694, 2697, 2767,
2769, 2770, 62 of 148 triangles, 2851, 2855, 2858, 2859, 2947, 15 of 56
triangles, 3024, 3030, 3113, 3114, 3115, 3118, 30 of 188 triangles, 3181,
3182, 3194, 19 of 120 triangles, 3277, 3278, 3280, 3282, 194 of 212 triangles,
3284, 3371, 3452, 29 of 136 triangles, 3459, 3462, 3520, 3521, 3525, 3527,
3659, 3661, 3662, 112 of 220 triangles, 3665, 3723, 3778, 3779, 3780, 3782, 6
of 156 triangles, 3786, 23 of 172 triangles, 3867, 4054, 100 of 112 triangles,
1 423-apo-J55_sharpenmap.mrc , 119 residues  
Showing 1387 region surfaces  
Grouped 122 regions  

> select #3.1099

1 model selected  

> select add #3.1429

2 models selected  

> select clear

> select #3.26

1 model selected  

> select add #3.1194

2 models selected  

> select add #3.1018

3 models selected  

> select add #3.977

4 models selected  

> select add #3.1229

5 models selected  

> select add #3.1333

6 models selected  

> select add #3.1334

7 models selected  

> select add #3.918

8 models selected  

> select add #3.921

9 models selected  

> select add #3.711

10 models selected  

> select add #3.750

11 models selected  

> select add #3.595

12 models selected  

> select add #3.460

13 models selected  

> select add #3.916

14 models selected  

> select add #3.1380

15 models selected  

> select add #3.1352

16 models selected  

> select add #3.1332

17 models selected  

> select add #3.1283

18 models selected  

> select add #3.1308

19 models selected  

> select add #3.1331

20 models selected  

> select add #3.1416

21 models selected  

> select add #3.1421

22 models selected  

> select add #3.1412

23 models selected  
Grouped 23 regions  

> select add #3.881

2 models selected  

> select add #3.597

3 models selected  

> hide #!3 models

> show #!3 models

> select add #3.544

4 models selected  
Grouped 4 regions  

> hide #!3 models

Showing 1241 region surfaces  

> show #!3 models

> select clear

> select #3.26

1 model selected  

> select add #3.631

2 models selected  

> select clear

Drag select of 1090, 61 of 120 triangles, 1315, 45 of 152 triangles, 1318,
1369, 197 of 224 triangles, 1373, 186 of 188 triangles, 1440, 28 of 56
triangles, 1443, 1445, 1447, 1448, 1520, 199 of 228 triangles, 1524, 1603, 244
of 288 triangles, 1605, 1607, 1659, 1661, 1663, 117 of 120 triangles, 1664,
1761, 1763, 1764, 1827, 1828, 1829, 1830, 70 of 200 triangles, 1831, 1912,
1914, 1977, 2064, 203 of 224 triangles, 2153, 95 of 136 triangles, 2156, 122
of 160 triangles, 2157, 2218, 2222, 2223, 2225, 2285, 59 of 80 triangles,
2287, 42 of 56 triangles, 2289, 2290, 2359, 2360, 156 of 160 triangles, 2418,
2469, 2470, 2471, 2472, 30 of 80 triangles, 2473, 2474, 82 of 128 triangles,
2475, 2560, 28 of 136 triangles, 2563, 2564, 2565, 51 of 56 triangles, 2631,
2686, 2689, 2758, 2760, 2761, 2762, 41 of 56 triangles, 2763, 96 of 204
triangles, 2845, 2847, 2848, 2926, 54 of 80 triangles, 2929, 2933, 2934, 3020,
3102, 3103, 3105, 89 of 152 triangles, 3110, 3175, 146 of 184 triangles, 3177,
3179, 3272, 90 of 260 triangles, 3275, 3276, 3363, 3365, 3367, 3368, 3446, 51
of 80 triangles, 3447, 3448, 3516, 86 of 156 triangles, 3518, 3585, 3586,
3590, 3591, 3658, 54 of 80 triangles, 3715, 7 of 56 triangles, 3717, 3718,
3720, 3772, 200 of 208 triangles, 3857, 3858, 3859, 3860, 3914, 3918, 5501, 28
of 225624 triangles  

> select subtract #3.1429

107 models selected  
Grouped 107 regions  

> select clear

> select #3.1429

1 model selected  

> select add #3.84

2 models selected  

> select add #3.86

3 models selected  

> select add #3.45

4 models selected  

> select add #3.47

5 models selected  

> select add #3.50

6 models selected  

> select add #3.56

7 models selected  

> select add #3.31

8 models selected  

> select add #3.25

9 models selected  

> select add #3.21

10 models selected  
Grouped 10 regions  

> select clear

[Repeated 1 time(s)]Showing 1126 region surfaces  

> select #3.26

1 model selected  

> select add #3.631

2 models selected  

> select add #3.35

3 models selected  

> select add #3.1425

4 models selected  

> select clear

> select #3.21

1 model selected  

> hide #!3 models

> show #!3 models

> select add #3.1138

2 models selected  

> select add #3.988

3 models selected  

> select add #3.1318

6 models selected  

> select subtract #3.1318

3 models selected  

> select add #3.1420

4 models selected  

> select add #3.1417

5 models selected  

> select add #3.644

6 models selected  

> select add #3.177

7 models selected  

> select add #3.142

8 models selected  

> select add #3.114

9 models selected  

> select add #3.1035

10 models selected  

> select subtract #3.1035

9 models selected  
Grouped 9 regions  

> hide #!3 models

> show #!3 models

Showing 1118 region surfaces  

> select #3.26

1 model selected  

> hide #!3 models

> show #!3 models

> select clear

> select #3.1099

1 model selected  

> select add #3.81

2 models selected  

> select add #3.97

3 models selected  

> select add #3.89

4 models selected  

> select add #3.91

5 models selected  
Grouped 5 regions  

> hide #!3 models

> show #!3 models

> select add #3.558

2 models selected  

> select clear

[Repeated 1 time(s)]Showing 1114 region surfaces  
Drag select of 1034, 1067, 1111, 1116, 51 of 56 triangles, 1165, 234 of 240
triangles, 1168, 1211, 1216, 1267, 26 of 328 triangles, 1275, 1337, 16 of 188
triangles, 1339, 91 of 228 triangles, 1353, 28 of 236 triangles, 1355, 1398,
310 of 312 triangles, 1403, 1407, 1418, 1483, 1704, 1708, 1713, 100 of 108
triangles, 1716, 1789, 39 of 136 triangles, 1790, 1795, 1798, 1804, 80 of 140
triangles, 1858, 1860, 1861, 1879, 1940, 1948, 2023, 45 of 136 triangles,
2024, 2108, 2114, 2126, 172 of 200 triangles, 2127, 38 of 120 triangles, 2179,
96 of 276 triangles, 2181, 2182, 2252, 2253, 2258, 2309, 2314, 2315, 2322,
2323, 2330, 2334, 293 of 320 triangles, 2386, 2438, 173 of 200 triangles,
2440, 2444, 2497, 54 of 80 triangles, 2514, 2515, 2517, 2523, 2599, 2604,
2607, 66 of 136 triangles, 2655, 2663, 2719, 2722, 2727, 2730, 2802, 2806,
2811, 2815, 32 of 56 triangles, 2901, 98 of 192 triangles, 2904, 61 of 144
triangles, 2961, 2969, 2980, 2982, 31 of 56 triangles, 3049, 41 of 108
triangles, 3052, 3063, 3075, 122 of 184 triangles, 3139, 3152, 3208, 114 of
184 triangles, 3213, 3222, 51 of 56 triangles, 3233, 213 of 356 triangles,
3309, 3325, 14 of 120 triangles, 3326, 3333, 50 of 132 triangles, 3398, 22 of
80 triangles, 3400, 3484, 3539, 107 of 160 triangles, 3560, 13 of 232
triangles, 3620, 64 of 80 triangles, 3624, 3884, 5519, 202 of 247560
triangles, 5533, 21 of 222452 triangles, 1 423-apo-J55_sharpenmap.mrc , 2
residues  

> select subtract #3.25

20 atoms, 2 residues, 107 models selected  

> select subtract #3.631

20 atoms, 2 residues, 106 models selected  

> select add #3.1105

20 atoms, 2 residues, 107 models selected  
Grouped 104 regions  

> select clear

> select #3.25

1 model selected  

> select add #3.467

2 models selected  

> select add #3.558

3 models selected  

> select add #3.399

4 models selected  

> select add #3.396

5 models selected  

> select add #3.243

6 models selected  

> select add #3.244

7 models selected  

> select add #3.400

8 models selected  

> select add #3.470

9 models selected  

> select add #3.428

10 models selected  

> select add #3.557

11 models selected  

> select add #3.395

12 models selected  

> select add #3.848

13 models selected  

> select add #3.632

14 models selected  

> select add #3.633

15 models selected  

> select add #3.211

16 models selected  
Grouped 16 regions  

> hide #!3 models

> show #!3 models

> select add #3.664

2 models selected  

> select add #3.274

3 models selected  

> select add #3.350

4 models selected  
Grouped 4 regions  

> hide #!3 models

> show #!3 models

> select add #3.349

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select #1

2 models selected  

> select clear

> select #1

2 models selected  

> select add #3.58

3 models selected  
Grouped 1 regions  

> hide #!3 models

> show #!3 models

> save "D:/File/PHD_related_work/423-apo 图/423-apo-ABCD-3.cxs"

——— End of log from Mon Feb 6 20:08:41 2023 ———

opened ChimeraX session  
Showing 423-apo-J55_sharpenmap.seg - 992 regions, 992 surfaces  

> hide #!3 models

> select #1

2 models selected  

> select clear

> show #!3 models

> select #3.991

1 model selected  

> select add #3.992

2 models selected  

> select add #3.37

3 models selected  

> select add #3.39

4 models selected  

> select add #3.23

5 models selected  

> select add /D:610

9 atoms, 8 bonds, 1 residue, 6 models selected  

> select add /D:611

13 atoms, 11 bonds, 2 residues, 6 models selected  
Grouped 5 regions  

> hide #!3 models

> show #!3 models

> select add #3.725

13 atoms, 11 bonds, 2 residues, 3 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.135

13 atoms, 11 bonds, 2 residues, 3 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.649

13 atoms, 11 bonds, 2 residues, 3 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select clear

[Repeated 1 time(s)]

> select #3.985

1 model selected  

> select add #3.987

2 models selected  

> select #3.990

1 model selected  

> select add #3.986

2 models selected  

> select add #3.988

3 models selected  

> select clear

> hide #!3 models

> select clear

> show #!3 models

> select clear

Showing 985 region surfaces  

> select #3.989

1 model selected  

> select add #3.23

2 models selected  

> select add #3.990

3 models selected  

> select add #3.988

4 models selected  

> select clear

> select #3.985

1 model selected  

> select add #3.728

2 models selected  

> select add #3.847

3 models selected  
Grouped 3 regions  

> select add #3.289

2 models selected  

> select add #3.90

3 models selected  

> select add #3.72

4 models selected  

> select add #3.60

5 models selected  

> select add #3.560

6 models selected  

> select add #3.755

7 models selected  

> select add #3.823

8 models selected  

> select add #3.923

9 models selected  

> select add #3.821

10 models selected  

> select add #3.869

11 models selected  

> select subtract #3.821

10 models selected  

> select subtract #3.869

9 models selected  

> select add #3.31

10 models selected  

> select add #3.28

11 models selected  

> select add #3.10

12 models selected  

> select subtract #3.10

11 models selected  

> select add #3.20

12 models selected  
Grouped 12 regions  

> select clear

[Repeated 1 time(s)]

> hide #!3 models

> show #!3 models

> hide #!3 models

Drag select of 1 423-apo-J55_sharpenmap.mrc , 1 residues  

> select clear

> show #!3 models

> select #3.986

1 model selected  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select clear

> select #3.987

1 model selected  

> select add #3.983

2 models selected  
Grouped 2 regions  

> hide #!3 models

Ungrouped to 2 regions  

> show #!3 models

> hide #!3 models

Ungrouped to 6 regions  

> show #!3 models

> select clear

> hide #!3 models

> select #1

2 models selected  

> show #!3 models

> select #3.60

1 model selected  

> hide #!3 models

> show #!3 models

Ungrouped to 23 regions  
Ungrouped to 2 regions  
Ungrouped to 7 regions  

> select clear

[Repeated 1 time(s)]

> hide #!3 models

Ungrouped to 410 regions  
Ungrouped to 21 regions  
Ungrouped to 12 regions  
Ungrouped to 42 regions  

> show #!3 models

> select clear

> select #3.1470

1 model selected  

> select clear

> hide #!3 models

> select clear

> show #!3 models

> select #3.986

1 model selected  

> select add #3.1470

2 models selected  

> select add #3.1439

3 models selected  

> select add #3.1455

4 models selected  
Drag select of 1252, 83 of 152 triangles, 1835, 1917, 30 of 172 triangles,
2065, 28 of 56 triangles, 2231, 2291, 2292, 75 of 256 triangles, 2423, 38 of
80 triangles, 2477, 2482, 52 of 136 triangles, 2632, 2693, 32 of 56 triangles,
2695, 2766, 33 of 56 triangles, 2771, 91 of 200 triangles, 2850, 50 of 172
triangles, 3021, 101 of 136 triangles, 3032, 3184, 80 of 268 triangles, 3372,
1528, 3867, 2767, 2162, 3525, 2227, 3659, 90 of 108 triangles, 2769, 3024,
1834, 3115, 3280, 2424, 1451, 2419, 1614, 1530, 3030, 3277, 3527, 3521, 4054,
108 of 112 triangles, 3520, 1249, 3452, 99 of 136 triangles, 1150, 135 of 212
triangles, 1666, 2855, 3462, 51 of 120 triangles, 2478, 1768, 3665, 42 of 56
triangles, 3371, 2164, 3778, 1669, 33 of 216 triangles, 2425, 2166, 3662,
1770, 1769, 2859, 57 of 80 triangles, 3661, 3182, 2479, 12 of 136 triangles,
2422, 1378, 2851, 2228, 1326, 64 of 212 triangles, 3282, 3779, 3113, 3114,
3782, 64 of 156 triangles, 3780, 1766, 3181, 1380, 3278, 44 of 112 triangles,
2426, 2697, 2694, 1665, 31 of 136 triangles, 2161, 2066, 2361, 1455, 130 of
228 triangles, 1916, 1532, 59 of 296 triangles, 3723, 107 of 200 triangles,
2635, 2159  
Drag select of 1609, 1767, 41 of 200 triangles, 1979, 222 of 228 triangles,
2065, 2067, 2291, 2292, 2362, 131 of 260 triangles, 2421, 2477, 2567, 2632,
2690, 98 of 160 triangles, 2691, 2766, 2850, 3021, 3116, 3451, 3663, 222 of
244 triangles, 1528, 2767, 2858, 28 of 204 triangles, 3525, 33 of 180
triangles, 2227, 3659, 2769, 26 of 168 triangles, 3024, 1834, 3115, 3280, 133
of 232 triangles, 2424, 2419, 1530, 3030, 138 of 180 triangles, 2232, 3277,
3521, 2770, 3520, 3452, 2478, 1768, 3371, 1055, 3778, 70 of 80 triangles,
1616, 12 of 56 triangles, 1669, 1770, 1769, 22 of 156 triangles, 3284, 1837,
24 of 120 triangles, 3661, 3182, 2479, 2422, 1378, 84 of 136 triangles, 2851,
2228, 2070, 1376, 3779, 40 of 108 triangles, 3113, 3114, 1766, 3181, 1612,
3278, 3459, 80 of 184 triangles, 2426, 251 of 260 triangles, 2697, 61 of 108
triangles, 2694, 45 of 112 triangles, 1665, 2066, 2361, 1322, 1672, 1916,
1379, 35 of 120 triangles, 1532, 252 of 296 triangles, 3118, 3723, 1375, 1325,
2635, 2159, 160 of 188 triangles  

> select clear

Drag select of 1609, 1767, 67 of 200 triangles, 1835, 55 of 80 triangles,
1979, 2065, 2067, 2231, 29 of 56 triangles, 2291, 2292, 2362, 184 of 260
triangles, 2420, 101 of 144 triangles, 2421, 2423, 2477, 2567, 2632, 2690,
2691, 2693, 2695, 2766, 2850, 3021, 3116, 3117, 33 of 56 triangles, 3372, 137
of 172 triangles, 3451, 2706, 9 of 56 triangles, 3663, 242 of 244 triangles,
1528, 3867, 2767, 2858, 2162, 3525, 3194, 43 of 120 triangles, 2227, 3659,
2769, 3024, 1834, 3115, 3280, 2424, 1451, 2419, 1617, 98 of 136 triangles,
1614, 1530, 3030, 2232, 3277, 3527, 101 of 112 triangles, 3521, 4054, 42 of
112 triangles, 2770, 3520, 1249, 3452, 1200, 1150, 111 of 212 triangles, 1666,
2855, 3462, 25 of 120 triangles, 2478, 1768, 3665, 3371, 1055, 2164, 38 of 80
triangles, 3778, 1616, 37 of 56 triangles, 1669, 2425, 2166, 41 of 80
triangles, 3662, 155 of 220 triangles, 1770, 1769, 3284, 2859, 1837, 50 of 120
triangles, 3661, 3182, 2479, 2422, 1378, 2851, 2228, 1326, 2070, 3282, 206 of
212 triangles, 1376, 3779, 3113, 3114, 3780, 1766, 3181, 1380, 134 of 144
triangles, 1612, 3278, 3459, 2426, 2697, 2694, 1665, 2161, 2066, 2361, 1455,
81 of 228 triangles, 1322, 1672, 1916, 1379, 52 of 120 triangles, 1532, 3118,
3723, 1375, 1325, 2635, 2159  

> select subtract #3.350

120 models selected  

> select subtract #3.593

119 models selected  

> select subtract #3.571

118 models selected  

> select add #3.1161

119 models selected  

> select subtract #3.1161

118 models selected  

> select subtract #3.923

117 models selected  
Drag select of 1078, 1120, 1176, 1187, 11 of 428 triangles, 1285, 16 of 136
triangles, 1294, 1297, 69 of 212 triangles, 1340, 1357, 319 of 360 triangles,
1406, 1422, 1510, 107 of 216 triangles, 1567, 1574, 157 of 180 triangles,
1697, 42 of 308 triangles, 1712, 1746, 17 of 148 triangles, 1793, 123 of 136
triangles, 1803, 1810, 1869, 1885, 1886, 1887, 1894, 1899, 201 of 280
triangles, 1939, 1945, 2019, 2020, 2033, 58 of 96 triangles, 2037, 169 of 200
triangles, 2095, 77 of 120 triangles, 2097, 2111, 2138, 2203, 2212, 15 of 56
triangles, 2213, 2259, 2311, 2318, 2320, 2342, 2385, 200 of 320 triangles,
2387, 64 of 80 triangles, 2405, 2503, 2519, 2546, 2592, 2595, 2598, 2653, 87
of 152 triangles, 2659, 2680, 162 of 248 triangles, 2725, 2746, 2801, 2805,
2881, 2883, 2888, 2908, 2910, 82 of 108 triangles, 2916, 2973, 2975, 2977,
2986, 2987, 2990, 134 of 144 triangles, 2998, 3005, 132 of 148 triangles,
3058, 3085, 3142, 3149, 3159, 215 of 256 triangles, 3221, 3238, 3249, 3252,
106 of 120 triangles, 3304, 5 of 56 triangles, 3312, 3319, 3320, 3332, 3346,
3419, 3420, 3426, 3434, 3479, 51 of 168 triangles, 3488, 161 of 180 triangles,
3491, 3501, 88 of 172 triangles, 3541, 148 of 180 triangles, 3553, 3562, 57 of
212 triangles, 3571, 106 of 112 triangles, 3572, 3580, 16 of 80 triangles,
3622, 3629, 3688, 59 of 136 triangles, 3698, 3702, 3703, 3747, 3750, 3836,
3888, 3953, 3956, 3995, 4001, 4040, 1229, 1889, 1417, 1175, 2338, 1492, 2329,
2455, 2394, 1356, 2265, 2728, 1799, 2457, 1722, 3070, 3084, 1235, 3154, 1124,
2328, 2994, 2531, 2118, 3337, 2734, 3897, 2814, 2336, 3486, 1956, 2810, 2527,
2263, 2526, 1042, 3244, 1426, 2451, 2666, 2736, 1807, 1179, 1358, 2204, 3634,
1963, 2206, 1 423-apo-J55_sharpenmap.mrc  

> select subtract #3.825

282 models selected  

> select subtract #3.926

281 models selected  

> select subtract #3.757

280 models selected  

> select add #3.757

281 models selected  

> select subtract #3.963

280 models selected  

> select subtract #3.782

279 models selected  

> select subtract #3.924

278 models selected  

> select subtract #3.286

277 models selected  

> select subtract #3.907

276 models selected  

> select subtract #3.970

275 models selected  

> select subtract #3.183

274 models selected  

> select subtract #3.399

273 models selected  

> select subtract #3.144

272 models selected  

> select subtract #3.872

271 models selected  

> select subtract #3.780

270 models selected  

> select subtract #3.187

269 models selected  

> select subtract #3.458

268 models selected  

> select add #3.825

269 models selected  

> select subtract #3.825

268 models selected  

> select subtract #3.757

267 models selected  

> select subtract #3.1378

266 models selected  

> select add #3.825

267 models selected  

> select subtract #3.825

266 models selected  

> select subtract #3.758

265 models selected  
Drag select of 999, 37 of 80 triangles, 1256, 77 of 80 triangles, 1386, 28 of
56 triangles, 1675, 313 of 320 triangles, 1852, 1925, 100 of 208 triangles,
1983, 1998, 10 of 144 triangles, 2069, 141 of 152 triangles, 2163, 98 of 168
triangles, 2172, 76 of 80 triangles, 2234, 2236, 2240, 2294, 176 of 248
triangles, 2296, 2302, 328 of 376 triangles, 2367, 2431, 2480, 123 of 140
triangles, 2481, 2484, 2488, 2639, 2698, 2702, 2707, 2708, 2768, 55 of 80
triangles, 2776, 2779, 17 of 112 triangles, 2854, 136 of 180 triangles, 2866,
2939, 189 of 196 triangles, 3025, 55 of 252 triangles, 3125, 3127, 103 of 364
triangles, 3185, 3201, 3203, 45 of 80 triangles, 3376, 38 of 152 triangles,
3381, 3387, 71 of 80 triangles, 3453, 15 of 56 triangles, 3464, 3605, 3672  
Drag select of 1615, 1667, 47 of 56 triangles, 1772, 26 of 80 triangles, 1917,
165 of 172 triangles, 1918, 99 of 168 triangles, 1984, 2231, 47 of 56
triangles, 2233, 193 of 208 triangles, 2295, 41 of 140 triangles, 2423, 15 of
80 triangles, 2482, 44 of 136 triangles, 2771, 198 of 200 triangles, 2774,
2936, 2938, 3025, 87 of 252 triangles, 3031, 85 of 204 triangles, 3184, 194 of
268 triangles, 3281, 104 of 120 triangles, 3526, 215 of 244 triangles  
Drag select of 1316, 68 of 228 triangles, 1320, 47 of 160 triangles, 1365, 105
of 184 triangles, 1368, 19 of 168 triangles, 1370, 1444, 1525, 95 of 176
triangles, 1526, 36 of 56 triangles, 1606, 49 of 156 triangles, 1755, 125 of
140 triangles, 1758, 1910, 1913, 5 of 168 triangles, 2158, 32 of 56 triangles,
2417, 101 of 248 triangles, 2688, 58 of 200 triangles, 3108, 138 of 220
triangles, 3112, 73 of 136 triangles, 3178, 120 of 184 triangles, 3264, 63 of
112 triangles, 3361, 3449, 28 of 56 triangles, 3508, 165 of 184 triangles,
3509, 3587, 3592, 66 of 184 triangles, 3716, 3917, 4050, 3590, 2563, 3020,
3367, 3516, 2359, 3177, 2689, 3276, 3658, 2933, 2934, 3772, 3591, 1977, 1827,
10 of 144 triangles, 1663, 1661, 3718, 1831, 1373, 1828, 2847, 123 of 160
triangles, 2686, 2289, 3365, 222 of 224 triangles, 1605, 1664, 3586, 131 of
192 triangles, 1830, 182 of 200 triangles, 2156, 3105, 2064, 3918, 3858, 3175,
2285, 3110, 3859, 3275, 2153, 1761, 3518, 2631, 2225, 168 of 192 triangles,
2360, 1764, 2290, 2418, 2157, 2845, 2471, 2564, 3368, 2469, 1448, 2475, 2758,
86 of 120 triangles, 3860, 2565, 32 of 56 triangles, 3103, 162 of 176
triangles, 3720, 1607, 1447, 1445, 45 of 136 triangles, 1914, 1603, 193 of 288
triangles, 1090, 2761, 81 of 112 triangles, 3179, 2848, 2763, 187 of 204
triangles, 3857, 25 of 136 triangles, 1829, 3448, 2474, 2473, 3856, 109 of 172
triangles, 3444, 101 of 260 triangles, 4012  

> select subtract #3.197

434 models selected  

> select subtract #3.219

433 models selected  

> select subtract #3.217

432 models selected  
Drag select of 3176, 51 of 56 triangles, 1315, 150 of 152 triangles, 3447,
1443, 92 of 136 triangles, 2929, 3102, 1827, 118 of 144 triangles, 3446, 2472,
75 of 80 triangles, 1831, 52 of 56 triangles, 1763, 2847, 1912, 2762, 1318,
3363, 223 of 224 triangles, 3717, 2225, 69 of 192 triangles, 1524, 2223, 51 of
56 triangles, 2470, 3272, 69 of 260 triangles, 2560, 41 of 136 triangles,
3585, 66 of 112 triangles, 2761, 3857, 18 of 136 triangles, 2218, 52 of 80
triangles, 2287, 20 of 56 triangles, 2760, 2222, 2473, 16 of 56 triangles  
Drag select of 1831, 10 of 56 triangles, 2847, 138 of 160 triangles, 2761,
2473, 16 of 56 triangles  

> select add #3.1099

454 models selected  

> select add #3.1107

455 models selected  

> select add #3.1011

456 models selected  

> select add #3.1040

457 models selected  

> select subtract #3.1445

456 models selected  
Drag select of 1180, 87 of 148 triangles, 1468, 71 of 224 triangles, 1498, 143
of 212 triangles, 1730, 1802, 51 of 80 triangles, 1805, 137 of 240 triangles,
1849, 106 of 280 triangles, 1853, 1931, 1954, 2128, 44 of 56 triangles, 2130,
149 of 184 triangles, 2173, 47 of 136 triangles, 2340, 2343, 132 of 192
triangles, 2376, 2392, 2396, 121 of 292 triangles, 2540, 27 of 80 triangles,
2670, 2711, 107 of 208 triangles, 2818, 2868, 193 of 228 triangles, 2907, 240
of 292 triangles, 2912, 22 of 224 triangles, 3158, 281 of 292 triangles, 3299,
111 of 136 triangles, 3386, 93 of 120 triangles, 3493, 60 of 100 triangles,
3570, 139 of 180 triangles, 3677, 48 of 56 triangles, 3745, 44 of 56
triangles, 2314, 131 of 136 triangles, 2438, 2497, 2386, 2440, 3213, 3884,
2730, 1337, 3309, 1716, 1111, 2179, 1407, 85 of 96 triangles, 3208, 2126,
2323, 2655, 150 of 176 triangles, 2253, 2334, 2309, 2517, 3620, 28 of 80
triangles, 2181, 1948, 3052, 2802, 1858, 1355, 2330, 2663, 2444, 3063, 2252,
36 of 112 triangles, 3325, 3539, 2315, 129 of 176 triangles, 2980, 1353, 185
of 236 triangles, 2982, 2727, 2981, 48 of 176 triangles, 1804, 3139, 2515,
2322, 2258, 3333, 3560, 2961, 2127, 1216, 123 of 168 triangles, 2108, 1704,
1708, 3326, 1034, 80 of 136 triangles, 2182, 2514, 1418, 2523, 2901, 1275,
3152, 2815, 1403, 1879, 2024, 2811, 2023, 47 of 136 triangles, 2722, 1795, 16
of 56 triangles, 3233, 1211, 127 of 208 triangles, 2114, 3484, 2806, 1790,
2599, 2969, 16 of 56 triangles, 3624, 2604, 1798, 1789, 45 of 136 triangles,
1940, 2607, 1860, 3075, 2904, 2719, 2898, 52 of 56 triangles  
Drag select of 994, 1020, 1084, 1182, 94 of 132 triangles, 1244, 1303, 1311,
1367, 408 of 468 triangles, 1429, 85 of 200 triangles, 1437, 1516, 1518, 1754,
1756, 112 of 296 triangles, 1821, 104 of 216 triangles, 1890, 44 of 144
triangles, 1892, 143 of 144 triangles, 1893, 1895, 1904, 1960, 92 of 212
triangles, 1968, 1970, 1973, 2058, 2060, 2135, 39 of 120 triangles, 2152, 213
of 256 triangles, 2208, 2209, 2214, 2276, 2277, 2281, 2284, 55 of 56
triangles, 2349, 2353, 212 of 268 triangles, 2355, 2412, 2458, 117 of 208
triangles, 2463, 2464, 2549, 2554, 2556, 2558, 2616, 2623, 2681, 2682, 2747,
2748, 2753, 2757, 30 of 184 triangles, 2827, 2836, 49 of 112 triangles, 2839,
2912, 46 of 224 triangles, 2919, 2997, 3161, 117 of 176 triangles, 3166, 3168,
3248, 73 of 204 triangles, 3254, 3257, 3266, 203 of 204 triangles, 3343, 15 of
56 triangles, 3347, 3433, 3436, 3497, 183 of 200 triangles, 3506, 3573, 33 of
168 triangles, 3647, 3707, 3763, 1 423-apo-J55_sharpenmap.mrc , 2 residues  

> select subtract #3.514

21 atoms, 2 residues, 654 models selected  

> select subtract #3.678

21 atoms, 2 residues, 653 models selected  

> select subtract /C:55

12 atoms, 1 residue, 653 models selected  

> select subtract #3.876

12 atoms, 1 residue, 652 models selected  

> select subtract #3.826

12 atoms, 1 residue, 651 models selected  

> select subtract #3.402

12 atoms, 1 residue, 650 models selected  

> select subtract #3.433

12 atoms, 1 residue, 649 models selected  

> select subtract #3.827

12 atoms, 1 residue, 648 models selected  

> select add #3.827

12 atoms, 1 residue, 649 models selected  

> select subtract #3.565

12 atoms, 1 residue, 648 models selected  

> select subtract #3.731

12 atoms, 1 residue, 647 models selected  
Drag select of 173, 340 of 484 triangles, 244, 1309, 1367, 189 of 468
triangles, 1442, 1601, 1658, 1756, 232 of 296 triangles, 1762, 1821, 147 of
216 triangles, 1825, 1975, 145 of 168 triangles, 1976, 144 of 184 triangles,
2059, 2152, 18 of 256 triangles, 2154, 2219, 2221, 2283, 2353, 18 of 268
triangles, 2356, 62 of 136 triangles, 2358, 2561, 2562, 2627, 2757, 85 of 184
triangles, 2836, 26 of 112 triangles, 2837, 98 of 136 triangles, 2841, 2846,
2930, 3016, 160 of 200 triangles, 3017, 3019, 25 of 56 triangles, 3101, 3107,
3271, 5 of 80 triangles, 3273, 3360, 333 of 368 triangles, 3364, 3443, 28 of
168 triangles, 3517, 16 of 56 triangles, 3584, 182 of 232 triangles, 1021, 1
423-apo-J55_sharpenmap.mrc , 39 residues  

> select subtract #3.732

324 atoms, 40 residues, 680 models selected  

> select subtract #3.930

324 atoms, 40 residues, 679 models selected  

> select subtract #3.192

324 atoms, 40 residues, 678 models selected  

> select subtract #3.1361

324 atoms, 40 residues, 677 models selected  

> select subtract #3.1032

324 atoms, 40 residues, 676 models selected  
Drag select of 1023, 1091, 80 of 152 triangles, 1092, 55 of 120 triangles,
1146, 1247, 1321, 1377, 78 of 380 triangles, 1449, 1450, 1527, 109 of 112
triangles, 1529, 1609, 1610, 101 of 168 triangles, 1670, 169 of 188 triangles,
1767, 1833, 1915, 105 of 144 triangles, 1979, 182 of 228 triangles, 2067,
2068, 2229, 25 of 268 triangles, 2230, 117 of 224 triangles, 2292, 137 of 256
triangles, 2362, 2363, 2420, 2421, 2567, 35 of 80 triangles, 2568, 13 of 120
triangles, 2633, 2690, 2691, 165 of 200 triangles, 2692, 2852, 3022, 34 of 292
triangles, 3116, 167 of 184 triangles, 1250, 56 of 240 triangles, 1665, 56 of
136 triangles  

> select subtract #3.112

324 atoms, 40 residues, 693 models selected  
Drag select of 1147, 1248, 134 of 204 triangles, 1251, 81 of 192 triangles,
1257, 50 of 56 triangles, 1323, 1377, 52 of 380 triangles, 1453, 241 of 264
triangles, 1531, 1536, 27 of 80 triangles, 1613, 70 of 248 triangles, 1668,
1677, 1765, 93 of 120 triangles, 1771, 1780, 155 of 336 triangles, 1838, 79 of
80 triangles, 1980, 1981, 88 of 168 triangles, 1989, 194 of 236 triangles,
2072, 259 of 332 triangles, 2160, 172 of 240 triangles, 2165, 198 of 204
triangles, 2293, 2297, 2364, 2370, 45 of 124 triangles, 2427, 126 of 232
triangles, 2483, 2485, 54 of 112 triangles, 2566, 216 of 368 triangles, 2569,
73 of 136 triangles, 2571, 49 of 80 triangles, 2634, 2636, 2775, 151 of 188
triangles, 2853, 161 of 196 triangles, 2937, 32 of 56 triangles, 3023, 103 of
176 triangles, 3190, 46 of 56 triangles, 3279, 44 of 80 triangles, 1148, 142
of 356 triangles, 1 423-apo-J55_sharpenmap.mrc  
Drag select of 1372, 1446, 21 of 412 triangles, 1522, 98 of 264 triangles,
1604, 1608, 87 of 120 triangles, 1760, 1818, 43 of 348 triangles, 1826, 1832,
1909, 43 of 80 triangles, 1978, 132 of 156 triangles, 2062, 83 of 168
triangles, 2063, 2151, 222 of 332 triangles, 2220, 190 of 192 triangles, 2226,
228 of 236 triangles, 2288, 119 of 256 triangles, 2354, 86 of 112 triangles,
2357, 2415, 63 of 80 triangles, 2559, 43 of 56 triangles, 2626, 2628, 2629, 43
of 112 triangles, 2630, 2685, 106 of 132 triangles, 2687, 2756, 61 of 112
triangles, 2840, 2931, 3018, 3106, 63 of 148 triangles, 3109, 225 of 296
triangles, 3111, 3170, 21 of 276 triangles, 3366, 3513, 88 of 100 triangles  
Grouped 768 regions  

> hide #!3 models

> show #!3 models

Showing 702 region surfaces  

> select clear

> select #3.20

1 model selected  

> hide #!3 models

> show #!3 models

> select #3.986

1 model selected  

> select add #3.1439

2 models selected  

> select clear

> select #3.1470

1 model selected  

> select add #3.1461

2 models selected  

> select add #3.1464

3 models selected  

> select subtract #3.1470

2 models selected  

> select add #3.1470

3 models selected  

> select add #3.1460

4 models selected  

> select add #3.1465

5 models selected  

> select add #3.1459

6 models selected  

> select add #3.1473

7 models selected  

> select add #3.1471

8 models selected  

> select add #3.1432

9 models selected  

> select add #3.46

10 models selected  

> select add #3.1457

11 models selected  

> select add #3.1472

12 models selected  

> select add #3.1468

13 models selected  

> select add #3.1458

14 models selected  

> select subtract #3.1470

13 models selected  

> select add #3.1470

14 models selected  

> select add #3.27

15 models selected  

> select add #3.1463

16 models selected  

> select add #3.11

17 models selected  

> select add #3.1

18 models selected  

> select add #3.25

19 models selected  
Grouped 19 regions  

> hide #!3 models

> show #!3 models

> select add #3.988

2 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1000

3 models selected  

> select add #3.135

4 models selected  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select add #3.649

5 models selected  

> select add #3.755

6 models selected  

> select add #3.991

7 models selected  

> select add #3.37

8 models selected  

> select add #3.994

9 models selected  

> select add #3.993

10 models selected  
Grouped 10 regions  

> hide #!3 models

> show #!3 models

> select add #3.902

2 models selected  

> select add #3.996

3 models selected  

> select add #3.1227

4 models selected  

> select add #3.1117

5 models selected  
Grouped 5 regions  

> hide #!3 models

> show #!3 models

> select add #3.987

2 models selected  

> select add #3.1001

3 models selected  
Grouped 3 regions  

> hide #!3 models

> save "D:/File/PHD_related_work/423-apo 图/423-apo-ABCD-4.cxs"

> show #!3 models

Showing 669 region surfaces  

> select clear

> select #3.20

1 model selected  

> select add #3.1455

2 models selected  

> select add #3.1

3 models selected  

> select clear

> select #3.986

1 model selected  

> select add #3.693

2 models selected  

> hide #!3 models

> show #!3 models

> select add #3.995

3 models selected  

> select add #3.1116

4 models selected  

> select subtract #3.986

3 models selected  

> select add #3.986

4 models selected  

> select add #3.282

5 models selected  

> select add #3.389

6 models selected  

> select add #3.725

7 models selected  
Grouped 7 regions  

> hide #!3 models

> show #!3 models

> select add #3.39

2 models selected  

> select add #3.28

3 models selected  

> select add #3.357

4 models selected  

> select add #3.330

5 models selected  

> select add #3.60

6 models selected  
Grouped 6 regions  

> hide #!3 models

> show #!3 models

Showing 658 region surfaces  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select clear

> select #3.20

1 model selected  

> select clear

> select #3.1

1 model selected  

> select add #3.1429

2 models selected  

> select add #3.1430

3 models selected  
Grouped 3 regions  

> select clear

> select #3.1

1 model selected  

> select clear

> select #3.1

1 model selected  

> select add #3.1455

2 models selected  

> select clear

> select #3.1439

1 model selected  

> select add #3.1421

2 models selected  

> select add #3.1423

3 models selected  

> select clear

> select #3.1439

1 model selected  

> select add #3.1419

2 models selected  

> select add #3.1423

3 models selected  

> select add #3.1421

4 models selected  

> select add #3.1420

5 models selected  

> select add #3.41

6 models selected  

> select add #3.1422

7 models selected  

> select add #3.53

8 models selected  

> select add #3.1426

9 models selected  

> select add #3.1425

10 models selected  

> select add #3.1424

11 models selected  

> select add #3.1427

12 models selected  

> select add #3.21

13 models selected  

> select subtract #3.1439

12 models selected  

> select add #3.1439

13 models selected  

> select add #3.3

14 models selected  

> select subtract #3.1439

13 models selected  

> select add #3.1439

14 models selected  

> select subtract #3.1439

13 models selected  
Grouped 13 regions  
Grouped 1 regions  

> hide #!3 models

> show #!3 models

> select add #3.57

2 models selected  
Grouped 2 regions  

> select add #3.1439

2 models selected  
Grouped 2 regions  

> select add #3.1250

2 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1251

3 models selected  

> select add #3.1378

4 models selected  

> select add #3.631

5 models selected  
Grouped 5 regions  

> hide #!3 models

> show #!3 models

> select add #3.1365

2 models selected  

> select add #3.1395

3 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1438

4 models selected  
Grouped 4 regions  

> hide #!3 models

> show #!3 models

> select add #3.1363

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select clear

Drag select of 3038, 11 of 100 triangles, 5552, 173 of 228752 triangles, 1
423-apo-J55_sharpenmap.mrc , 2 residues  

> select clear

Drag select of 5552, 156 of 228752 triangles, 1 423-apo-J55_sharpenmap.mrc , 2
residues  

> select clear

> select #3.11

1 model selected  

> select add #3.1435

2 models selected  

> select add #3.699

3 models selected  

> hide #!3 models

> show #!3 models

> select add #3.1304

6 models selected  

> select add #3.1264

7 models selected  

> select add #3.479

8 models selected  

> select add #3.990

9 models selected  

> select add #3.1436

10 models selected  
Grouped 8 regions  

> hide #!3 models

> show #!3 models

> select add #3.1007

4 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select add #3.205

4 models selected  
Grouped 2 regions  

> hide #!3 models

> select #1

2 models selected  

> select clear

> show #!3 models

Showing 625 region surfaces  

> select #3.20

1 model selected  

> hide #!3 models

> show #!3 models

> select #3.1455

1 model selected  

> hide #!3 models

> show #!3 models

> select add #3.3

2 models selected  

> select clear

> select #3.3

1 model selected  

> select add #3.11

2 models selected  

> select clear

> select #3.1455

1 model selected  

> select add #3.1417

2 models selected  

> select add #3.1416

3 models selected  
Grouped 3 regions  

> hide #!3 models

> show #!3 models

> select clear

Showing 623 region surfaces  

> select #3.11

1 model selected  

> select add #3.1418

2 models selected  

> select add #3.42

3 models selected  

> select add #3.43

4 models selected  
Grouped 4 regions  

> select clear

> select #3.21

1 model selected  

> select add #3.33

2 models selected  
Grouped 2 regions  

> select add #3.38

2 models selected  
Grouped 2 regions  

> select clear

> select #3.3

1 model selected  

> select add #3.30

2 models selected  

> select add #3.32

3 models selected  

> select add #3.6

4 models selected  

> select add #3.15

5 models selected  

> select subtract #3.6

4 models selected  

> select subtract #3.15

3 models selected  

> select subtract #3.3

2 models selected  

> select add #3.3

3 models selected  
Grouped 3 regions  

> select add #3.15

2 models selected  

> select subtract #3.3

1 model selected  

> select add #3.3

2 models selected  

> select add #3.6

3 models selected  
Grouped 3 regions  

> select clear

> select #3.1

1 model selected  

> select add #3.13

2 models selected  
Grouped 2 regions  

> select clear

[Repeated 1 time(s)]

> select #3.11

1 model selected  

> select add #3.1428

2 models selected  

> select add #3.2

3 models selected  
Grouped 3 regions  

> select clear

> hide #!3 models

> save "D:/File/PHD_related_work/423-apo 图/423-apo-ABCD-5.cxs"

——— End of log from Fri Feb 10 18:23:26 2023 ———

opened ChimeraX session  
Showing 423-apo-J55_sharpenmap.seg - 611 regions, 611 surfaces  

> select #3.609

1 model selected  

> select add #3.603

2 models selected  

> select add #3.597

3 models selected  

> select add #3.600

4 models selected  

> select add #3.575

5 models selected  

> select add #3.574

6 models selected  

> select add #3.146

7 models selected  

> select add #3.608

8 models selected  

> select subtract #3.608

7 models selected  
Grouped 7 regions  

> select clear

[Repeated 1 time(s)]

> select #3.611

1 model selected  

> select add #3.601

2 models selected  

> select add #3.598

3 models selected  

> select add #3.606

4 models selected  

> select add #3.146

5 models selected  

> select subtract #3.146

4 models selected  

> select add #3.512

5 models selected  

> select add #3.513

6 models selected  

> select add #3.453

7 models selected  

> select add #3.501

8 models selected  

> select add #3.477

9 models selected  

> select add #3.549

10 models selected  

> select add #3.437

11 models selected  
Grouped 11 regions  

> hide #!3 models

> show #!3 models

> select add #3.602

2 models selected  

> select add #3.596

3 models selected  
Grouped 3 regions  

> select clear

> select #3.608

1 model selected  

> select add #3.605

2 models selected  

> select add #3.593

3 models selected  
Grouped 3 regions  

> select clear

> hide #!3 models

> open "D:/File/PHD_related_work/423-apo/423-apo-J55_sharpenmap 520-810.mrc"

Opened 423-apo-J55_sharpenmap 520-810.mrc as #4, grid size 320,320,320, pixel
1.04, shown at level 0.444, step 2, values float32  

> color #4 #b2b2b20e models

> color #4 #b2b2b28c models

> color #4 #a5a5a58c models

> set bgColor white

> hide #2 models

> show #2 models

> color #4 #b5b5b58c models

> color #4 #b6b6b68c models

> color #4 #a5a5a58c models

> color #4 #b0b0b08c models

> color #4 #afafaf8c models

> color #4 #afafaf82 models

> hide #2 models

> show #2 models

> select /D

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #93cf81ff

> select /B

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> select /A

5431 atoms, 5556 bonds, 670 residues, 1 model selected  

> color sel #8098ebff

> select /B

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> color sel #dacee8ff

> select clear

[Repeated 1 time(s)]

> hide #!1 models

> show #!1 models

> hide #!4 models

> show #!3 models

> select #3.437

1 model selected  

> select add #3.607

2 models selected  
Grouped 2 regions  

> hide #!3 models

> show #!3 models

> select clear

> select #3.437

1 model selected  

> hide #!3 models

> show #!3 models

> select #3.229

1 model selected  

> select add #3.146

2 models selected  
Grouped 2 regions  

> select clear

> hide #!3 models

> show #!4 models

> hide #2 models

> save "D:/File/PHD_related_work/423-apo 图/423_510-810&1-810-1.cxs"

——— End of log from Thu Feb 16 22:18:38 2023 ———

opened ChimeraX session  
Showing 423-apo-J55_sharpenmap.seg - 589 regions, 589 surfaces  

> hide #!3 models

> select /C

5431 atoms, 5556 bonds, 670 residues, 1 model selected  

> hide #!4 models

> show #!3 models

> color #3.589 #bc8ae8ff

> color #3.587 #ffc079ff

> hide #!3 models

> show #!4 models

> lighting soft

> color #4 #87878782 models

> color #4 #7f7f7f82 models

> color #4 #7d7d7d82 models

> color #4 #7a7a7a82 models

> save "D:/File/PHD_related_work/423-apo 图/423_510-810&1-810-2.cxs"

——— End of log from Thu Feb 16 22:51:39 2023 ———

opened ChimeraX session  
Showing 423-apo-J55_sharpenmap.seg - 589 regions, 589 surfaces  

> hide #!4 models

> show #2 models

> select clear

> select #3.587

1 model selected  

> select add #3.589

2 models selected  

> select add #3.588

3 models selected  

> select clear

> select #3.587

1 model selected  

> select add #3.588

2 models selected  

> select clear

> hide #!3 models

> hide #!1 models

> select /D:479

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

59 atoms, 59 bonds, 7 residues, 1 model selected  

> select up

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> select ~sel

16321 atoms, 16697 bonds, 2013 residues, 595 models selected  

> cartoon hide (#2 & sel)

> select /D:66

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

232 atoms, 243 bonds, 26 residues, 1 model selected  

> select up

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> ui tool show "Color Actions"

No target buttons for the coloring action are checked  
[Repeated 1 time(s)]

> select clear

> show #!3 models

> select #3.588

1 model selected  

> select #3.586

1 model selected  

> select add #3.589

2 models selected  

> select add #3.587

3 models selected  

> hide #2 models

> select clear

Drag select of 879, 57 of 80 triangles, 937, 963, 985, 997, 1024, 1025, 1026,
1092, 1093, 1094, 1103, 1145, 1199, 1203, 1205, 1254, 1255, 1260, 1265, 1327,
1331, 190 of 200 triangles, 1334, 1336, 1377, 1382, 1385, 6 of 136 triangles,
1388, 1452, 1535, 1609, 1673, 1685, 1686, 447 of 472 triangles, 1773, 1775,
1778, 1779, 1836, 1840, 1850, 1979, 1982, 1986, 1993, 2067, 2073, 2168, 2175,
2231, 2235, 2238, 2292, 2365, 2366, 2368, 2371, 51 of 248 triangles, 2421,
2423, 2428, 2490, 2567, 2637, 2638, 2641, 2690, 2691, 2699, 2772, 2773, 2862,
2950, 2957, 3025, 143 of 252 triangles, 3032, 15 of 56 triangles, 3049, 60 of
108 triangles, 3116, 3197, 3283, 3398, 3400, 51 of 108 triangles, 3981, 5570,
128 of 252704 triangles  

> select subtract #3.586

82 models selected  
Grouped 82 regions  
Drag select of 5570, 128 of 252704 triangles  

> select subtract #3.586

Nothing selected  
Drag select of 941, 964, 1067, 1099, 1165, 1167, 41 of 80 triangles, 1168,
1339, 1483, 1692, 1713, 47 of 108 triangles, 1861, 1997, 87 of 364 triangles,
2876, 3222, 3313, 41 of 80 triangles, 3399, 3478, 3934, 48 of 56 triangles,
5575, 132 of 247492 triangles  

> select clear

> select #3.586

1 model selected  

> select #3.589

1 model selected  

> select add #3.587

2 models selected  

> select clear

Drag select of 24, 26, 29, 65, 68, 69, 75, 85, 88, 95, 98, 115, 119, 200, 288,
328, 361, 362, 382, 383, 449, 519, 528, 653, 658, 771, 793, 800, 825, 827,
833, 836, 838, 845, 848, 852, 858, 865, 869, 875, 885, 886, 888, 892, 897,
899, 912, 933, 941, 949, 951, 957, 959, 962, 964, 983, 992, 996, 998, 1004,
1008, 1009, 1012, 1013, 1015, 1021, 1022, 1032, 1035, 1043, 1045, 1048, 1051,
1052, 1053, 1054, 1061, 1067, 1068, 1069, 1070, 1088, 1089, 1099, 1102, 1104,
1115, 1116, 1117, 1118, 1119, 1125, 1126, 1131, 1132, 1133, 1137, 1140, 1141,
1142, 1143, 1144, 1158, 1161, 1164, 1165, 1167, 1168, 1169, 1171, 1172, 1174,
1176, 1177, 1186, 1196, 1197, 1198, 1201, 1215, 1217, 1221, 1223, 1224, 1228,
1230, 1234, 1238, 1240, 1245, 1246, 1252, 1258, 1262, 1277, 1282, 1285, 1290,
1296, 1297, 1302, 1306, 1308, 1309, 1310, 1312, 1313, 1316, 1317, 1319, 1335,
1339, 1343, 1344, 1346, 1350, 1351, 1352, 1359, 1360, 1361, 1365, 1367, 1368,
1371, 1374, 1383, 1387, 1389, 1405, 1408, 1410, 1412, 1413, 1414, 1415, 1434,
1435, 1440, 1441, 1463, 1467, 1472, 1473, 1474, 1475, 1481, 1482, 1483, 1486,
1487, 1488, 1489, 1493, 1495, 1501, 1503, 1509, 1523, 1533, 1538, 1539, 1541,
1542, 1556, 1559, 1574, 1576, 1580, 1583, 1585, 1586, 1593, 1595, 1600, 1620,
1622, 1629, 1634, 1635, 1636, 1637, 1639, 1650, 1653, 1655, 1656, 1657, 1659,
1660, 1662, 1676, 1684, 1692, 1695, 1696, 1707, 1713, 1721, 1731, 1732, 1737,
1743, 1745, 1752, 1756, 1757, 1759, 1782, 1788, 1811, 1813, 1816, 1819, 1820,
1821, 1822, 1823, 1824, 1827, 1839, 1847, 1854, 1856, 1857, 1861, 1867, 1871,
1872, 1873, 1874, 1875, 1877, 1881, 1885, 1888, 1890, 1898, 1906, 1908, 1911,
1921, 1928, 1932, 1933, 1946, 1947, 1961, 1962, 1965, 1970, 1971, 1972, 1988,
1997, 2011, 2017, 2018, 2021, 2032, 2033, 2045, 2050, 2054, 2055, 2061, 2074,
2080, 2082, 2083, 2094, 2109, 2113, 2139, 2140, 2146, 2147, 2150, 2152, 2155,
2167, 2169, 2170, 2178, 2190, 2192, 2194, 2209, 2216, 2217, 2225, 2239, 2244,
2256, 2273, 2278, 2280, 2282, 2286, 2300, 2308, 2319, 2335, 2352, 2380, 2400,
2410, 2413, 2414, 2416, 2437, 2439, 2442, 2446, 2449, 2453, 2456, 2465, 2468,
2476, 2494, 2496, 2499, 2500, 2504, 2516, 2522, 2525, 2543, 2552, 2557, 2570,
2573, 2581, 2597, 2615, 2640, 2660, 2675, 2681, 2683, 2684, 2706, 2713, 2716,
2732, 2742, 2749, 2757, 2759, 2764, 2765, 2788, 2790, 2793, 2795, 2798, 2823,
2837, 2842, 2844, 2849, 2872, 2874, 2876, 2892, 2908, 2910, 2911, 2912, 2918,
2922, 2928, 2932, 2947, 2958, 2979, 2986, 2990, 3008, 3012, 3038, 3040, 3064,
3069, 3077, 3092, 3095, 3144, 3156, 3159, 3161, 3173, 3174, 3186, 3210, 3222,
3223, 3225, 3229, 3260, 3262, 3268, 3274, 3291, 3306, 3313, 3317, 3332, 3341,
3347, 3353, 3359, 3373, 3399, 3428, 3439, 3444, 3446, 3460, 3476, 3478, 3480,
3488, 3514, 3515, 3538, 3548, 3552, 3561, 3562, 3571, 3584, 3596, 3597, 3598,
3601, 3610, 3617, 3641, 3649, 3655, 3666, 3715, 3732, 3782, 3786, 3788, 3793,
3857, 3862, 3920, 3934, 3953, 3958, 3973, 4040, 4072, 4074, 4077, 4173, 4200,
4225, 5570, 5575, 5577  

> color #3 white

> color #3 #ffffff01

> color #3 #ffffff96

> color #3 #b1b1b196

> color #3 #adadad96

> select clear

> surface zone #4 nearAtoms #2 distance 3

> surface zone #3 nearAtoms #2 distance 3

> show #2 models

> color #3 #adadad78

> color #3 #c6c6c678

> select clear

> color #3 #d5d5d578

> select /D:141

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

169 atoms, 174 bonds, 20 residues, 1 model selected  

> select up

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> color #3 #08ff2578

> undo

> select clear

> select /D:64

14 atoms, 15 bonds, 1 residue, 1 model selected  

> hide #!3 models

> select up

232 atoms, 243 bonds, 26 residues, 1 model selected  

> select up

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> select clear

[Repeated 1 time(s)]

> select /D:135

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

169 atoms, 174 bonds, 20 residues, 1 model selected  

> select up

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> color sel red

> ui tool show "Color Actions"

> set bgColor lime

[Repeated 1 time(s)]

> set bgColor white

> select clear

> select /D:64

14 atoms, 15 bonds, 1 residue, 1 model selected  

> select up

232 atoms, 243 bonds, 26 residues, 1 model selected  

> select up

5459 atoms, 5585 bonds, 673 residues, 1 model selected  

> color sel lime

> select clear

> show #!3 models

> show #!4 models

> hide #!4 models

> color #3 #bfbfbf78

> save "D:/File/PHD_related_work/423-apo 图/423-apo-map-TMD-CNDB-ANK.cxs"

——— End of log from Wed Mar 15 15:32:15 2023 ———

opened ChimeraX session  




OpenGL version: 3.3.13596 Core Profile Forward-Compatible Context 20.10.28.10 27.20.11028.10001
OpenGL renderer: AMD Radeon(TM) Graphics
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: zh_CN.cp936
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: LENOVO
Model: 82DM
OS: Microsoft Windows 11 家庭中文版 (Build 22621)
Memory: 16,499,134,464
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 4800U with Radeon Graphics         
OSLanguage: zh-CN

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pywin32: 303
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    WMI: 1.5.1
    zipp: 3.11.0