Opened 2 years ago

Closed 2 years ago

#8960 closed defect (can't reproduce)

gllClear: invalid framebuffer operation rendering status line, Mac laptop external display

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "/Users/haoyangli/Google
> Drive/Grants/ReVAMPP_2023/Figures/4NAbEpiopes/LASV_4epitopes.cxs"

Log from Fri May 5 12:34:02 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open /Users/haoyangli/Desktop/LASV_4epitopes.cxs

Log from Fri May 5 12:08:43 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open /Users/haoyangli/Desktop/LASV_4epitopes.cxs format session

Log from Fri May 5 11:47:56 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/haoyangli/Desktop/Four_epitopes.cif

Chain information for Four_epitopes.cif  
---  
Chain | Description  
1.1/A 1.1/B 1.1/C | glycoprotein G1  
1.1/D 1.1/F 1.1/H | 12.1F heavy chain (variable domain)  
1.2/D 1.2/G 1.2/H | 25.10C fab heavy chain  
1.1/E 1.1/G 1.1/L | 12.1F light chain (variable domain)  
1.2/E 1.2/K 1.2/L | 25.10C fab light chain  
1.3/H | 8.9F heavy chain (variable domain)  
1.3/L | 8.9F light chain (variable domain)  
1.1/O 1.1/Q 1.1/S | 37.2D heavy chain (variable domain)  
1.1/P 1.1/R 1.1/T | 37.2D light chain (variable domain)  
1.1/a 1.1/b 1.1/c | GP2  
  

> sequence chain #1.1/A#1.1/B#1.1/C

Alignment identifier is 1  

> sequence chain #1.1/a#1.1/b#1.1/c

Alignment identifier is 2  

> lighting soft

> set bgColor white

> hide atoms

Drag select of 243 residues  

> hide sel atoms

> hide sel cartoons

> select #1.1/A:59-259/B-C

4440 atoms, 4542 bonds, 6 pseudobonds, 555 residues, 2 models selected  

> show sel cartoons

> show sel surfaces

> color (#!1.1 & sel) cornflower blue

> color (#!1.1 & sel) #76d6ffff

> color (#!1.1 & sel) #0096ffff

> color (#!1.1 & sel) #00fdffff

> color (#!1.1 & sel) #76d6ffff

> color (#!1.1 & sel) #7a81ffff

> color (#!1.1 & sel) #76d6ffff

> color (#!1.1 & sel) #0096ffff

> color (#!1.1 & sel) cornflower blue

> select #1.1/a-c:260

12 atoms, 9 bonds, 3 residues, 1 model selected  

> select #1.1/a-c

3672 atoms, 3756 bonds, 3 pseudobonds, 453 residues, 2 models selected  

> show sel cartoons

> show sel surfaces

> color (#!1.1 & sel) #ff8ad8ff

> select clear

> select ::name="BMA"::name="FUC"::name="MAN"::name="NAG"

1580 atoms, 1674 bonds, 127 residues, 1 model selected  

> show sel atoms

> select clear

> select #1.1/A:59-259/B-C

4440 atoms, 4542 bonds, 6 pseudobonds, 555 residues, 2 models selected  

> select #1.1/A#1.1/B#1.1/C

4454 atoms, 4557 bonds, 6 pseudobonds, 556 residues, 2 models selected  

> color (#!1.1 & sel) #929292ff

> color (#!1.1 & sel) #919191ff

> color (#!1.1 & sel) #797979ff

> color (#!1.1 & sel) #929292ff

> select #1.1/a#1.1/b#1.1/c

3672 atoms, 3756 bonds, 3 pseudobonds, 453 residues, 2 models selected  

> color (#!1.1 & sel) #d6d6d6ff

> color (#!1.1 & sel) #ebebebff

> select clear

> select ::name="BMA"::name="FUC"::name="MAN"::name="NAG"

1580 atoms, 1674 bonds, 127 residues, 1 model selected  

> show sel surfaces

> color (#!1.1 & sel) #ff2600ff

> transparency (#!1.1 & sel) 50

> transparency (#!1.1 & sel) 90

> style sel ball

Changed 1580 atom styles  

> select clear

> save /Users/haoyangli/Desktop/LASV_4epitopes.cxs

——— End of log from Fri May 5 11:47:56 2023 ———

opened ChimeraX session  

> interfaces select #1.1/A#1.1/B#1.1/C & ::polymer_type>0 contacting
> #1.1/D#1.1/E#1.1/F#1.1/G#1.1/H#1.1/L & ::polymer_type>0 areaCutoff 0

50 contacting residues  

> color (#!1.1 & sel) #008f00ff

> interfaces select #1.1/A#1.1/B#1.1/C & ::polymer_type>0 contacting
> #1.3/L#1.3/H & ::polymer_type>0 areaCutoff 0

23 contacting residues  

> color (#!1.1 & sel) #9437ffff

> interfaces select #1.1/a#1.1/b#1.1/c#1.1/A#1.1/B#1.1/C & ::polymer_type>0
> contacting #1.2/D#1.2/E#1.2/G#1.2/H#1.2/K#1.2/L & ::polymer_type>0
> areaCutoff 0

33 contacting residues  

> color (#!1.1 & sel) #929000ff

> interfaces select #1.1/a#1.1/b#1.1/c & ::polymer_type>0 contacting
> #1.1/T#1.1/O#1.1/P#1.1/Q#1.1/R#1.1/S & ::polymer_type>0 areaCutoff 0

72 contacting residues  

> color (#!1.1 & sel) orange

> select clear

> save /Users/haoyangli/Desktop/LASV_4epitopes.cxs

> select #1.1/B:227@CZ3

1 atom, 1 residue, 1 model selected  

> select #1.1/B:227@CE3

1 atom, 1 residue, 1 model selected  

> select clear

> select ::name="BMA"::name="FUC"::name="MAN"::name="NAG"

1580 atoms, 1674 bonds, 127 residues, 1 model selected  

> hide sel surfaces

> select clear

> select ::name="BMA"::name="FUC"::name="MAN"::name="NAG"

1580 atoms, 1674 bonds, 127 residues, 1 model selected  

> color (#!1.1 & sel) light gray

> show sel surfaces

> transparency (#!1.1 & sel) 90

> select clear

> select ::name="BMA"::name="FUC"::name="MAN"::name="NAG"

1580 atoms, 1674 bonds, 127 residues, 1 model selected  

> color (#!1.1 & sel) orange red

> transparency (#!1.1 & sel) 90

> select clear

> save /Users/haoyangli/Desktop/LASV_4epitopes.cxs

Drag select of Four_epitopes.cif_A SES surface, Four_epitopes.cif_B SES
surface, Four_epitopes.cif_C SES surface, Four_epitopes.cif_a SES surface,
Four_epitopes.cif_b SES surface, Four_epitopes.cif_c SES surface,
Four_epitopes.cif_A SES surface, Four_epitopes.cif_I SES surface,
Four_epitopes.cif_J SES surface, Four_epitopes.cif_K SES surface,
Four_epitopes.cif_M SES surface, Four_epitopes.cif_N SES surface,
Four_epitopes.cif_U SES surface, Four_epitopes.cif_V SES surface,
Four_epitopes.cif_W SES surface, Four_epitopes.cif_X SES surface,
Four_epitopes.cif_Y SES surface, Four_epitopes.cif_Z SES surface,
Four_epitopes.cif_d SES surface, Four_epitopes.cif_e SES surface,
Four_epitopes.cif_f SES surface, Four_epitopes.cif_g SES surface,
Four_epitopes.cif_h SES surface, Four_epitopes.cif_i SES surface,
Four_epitopes.cif_j SES surface, Four_epitopes.cif_k SES surface,
Four_epitopes.cif_l SES surface, Four_epitopes.cif_m SES surface,
Four_epitopes.cif_n SES surface, Four_epitopes.cif_o SES surface,
Four_epitopes.cif_p SES surface, Four_epitopes.cif_q SES surface,
Four_epitopes.cif_r SES surface, Four_epitopes.cif_s SES surface,
Four_epitopes.cif_t SES surface, Four_epitopes.cif_u SES surface,
Four_epitopes.cif_v SES surface, Four_epitopes.cif_w SES surface,
Four_epitopes.cif_x SES surface, 1580 atoms, 1008 residues, 9 pseudobonds,
1674 bonds  

> hide sel cartoons

> select clear

> save /Users/haoyangli/Desktop/LASV_4epitopes.cxs

——— End of log from Fri May 5 12:08:43 2023 ———

opened ChimeraX session  

> interfaces select #1.1/A#1.1/B#1.1/C & ::polymer_type>0 contacting
> #1.1/D#1.1/E#1.1/F#1.1/G#1.1/H#1.1/L & ::polymer_type>0 areaCutoff 0

50 contacting residues  

> color (#!1.1 & sel) #008f00ff

> select clear

> save /Users/haoyangli/Desktop/LASV_4epitopes.cxs

——— End of log from Fri May 5 12:34:02 2023 ———

opened ChimeraX session  

> select ::name="BMA"::name="FUC"::name="MAN"::name="NAG"

1580 atoms, 1674 bonds, 127 residues, 1 model selected  

> color (#!1.1 & sel) light gray

> surface hidePatches (#!1.1 & sel)

> select clear

> select ::name="BMA"::name="FUC"::name="MAN"::name="NAG"

1580 atoms, 1674 bonds, 127 residues, 1 model selected  

> style sel stick

Changed 1580 atom styles  

> style sel sphere

Changed 1580 atom styles  

> color sel byhetero

> style sel ball

Changed 1580 atom styles  

> select clear

> select ::name="BMA"::name="FUC"::name="MAN"::name="NAG"

1580 atoms, 1674 bonds, 127 residues, 1 model selected  

> color (#!1.1 & sel) #ebebebff

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 84, in _expose_event  
self.status(self._last_message, self._last_color)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 150, in status  
r.draw_background()  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1178, in draw_background  
GL.glClear(flags)  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 84, in _expose_event  
self.status(self._last_message, self._last_color)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 150, in status  
r.draw_background()  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1178, in draw_background  
GL.glClear(flags)  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 84, in _expose_event  
self.status(self._last_message, self._last_color)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/statusbar.py", line 150, in status  
r.draw_background()  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1178, in draw_background  
GL.glClear(flags)  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glClear,  
cArguments = (16640,)  
)  
  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glBlitFramebuffer,  
cArguments = (  
0,  
0,  
1131,  
691,  
0,  
0,  
1131,  
691,  
GL_COLOR_BUFFER_BIT,  
GL_NEAREST,  
)  
)  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/updateloop.py", line 73, in draw_new_frame  
view.draw(check_for_changes = False)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 177, in draw  
self._draw_scene(camera, drawings)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 266, in _draw_scene  
offscreen.finish(r)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1745, in finish  
cfb.copy_from_framebuffer(fb, depth=False)  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2285, in copy_from_framebuffer  
GL.glBlitFramebuffer(0, 0, w, h, 0, 0, w, h, what, GL.GL_NEAREST)  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1286,  
description = b'invalid framebuffer operation',  
baseOperation = glBlitFramebuffer,  
cArguments = (  
0,  
0,  
1131,  
691,  
0,  
0,  
1131,  
691,  
GL_COLOR_BUFFER_BIT,  
GL_NEAREST,  
)  
)  
  




OpenGL version: 4.1 ATI-4.7.101
OpenGL renderer: AMD Radeon Pro 5300M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,1
      Processor Name: 6-Core Intel Core i7
      Processor Speed: 2.6 GHz
      Number of Processors: 1
      Total Number of Cores: 6
      L2 Cache (per Core): 256 KB
      L3 Cache: 12 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1715.60.5.0.0 (iBridge: 19.16.10647.0.0,0)
      OS Loader Version: 540.60.2~89

Software:

    System Software Overview:

      System Version: macOS 12.1 (21C52)
      Kernel Version: Darwin 21.2.0
      Time since boot: 4 days 17:03

Graphics/Displays:

    Intel UHD Graphics 630:

      Chipset Model: Intel UHD Graphics 630
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3e9b
      Revision ID: 0x0000
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Family: Supported, Metal GPUFamily macOS 2

    AMD Radeon Pro 5300M:

      Chipset Model: AMD Radeon Pro 5300M
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x7340
      Revision ID: 0x0043
      ROM Revision: 113-D3220E-190
      VBIOS Version: 113-D32207P1-020
      Option ROM Version: 113-D32207P1-020
      EFI Driver Version: 01.A1.190
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        ASUS VE278:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: E4LMTF043857
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: Yes
          Connection Type: DVI or HDMI
          Adapter Firmware Version: 7.55


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

Change History (2)

comment:1 by pett, 2 years ago

Component: UnassignedGraphics
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissiongllClear: invalid framebuffer operation

comment:2 by Tom Goddard, 2 years ago

Resolution: can't reproduce
Status: assignedclosed
Summary: gllClear: invalid framebuffer operationgllClear: invalid framebuffer operation rendering status line, Mac laptop external display

Error drawing status line on Mac laptop with external display being used (laptop closed), AMD graphics.

I suspect this is an Apple OpenGL problem, maybe happening after closing the laptop display and the application moving to he external display.

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