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Opened 3 years ago
Closed 3 years ago
#8953 closed defect (duplicate)
Matchmaker: 'NoneType' object has no attribute 'setChecked'
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Comparison | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:\\\Cassandra\\\Chimera Images\\\dual colored dimers overlay .pdb"
Summary of feedback from opening C:\\\Cassandra\\\Chimera Images\\\dual
colored dimers overlay .pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ASP A 47
LYS A 52 1 6
End residue of secondary structure not found: HELIX 2 2 THR A 100 GLY A 111 1
12
Start residue of secondary structure not found: HELIX 3 3 LEU A 279 ARG A 284
1 6
Start residue of secondary structure not found: HELIX 4 4 ASP A 313 MET A 317
1 5
Start residue of secondary structure not found: SHEET 1 1 1 TYR A 12 THR A 15
0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 22 LEU A 25
0
Start residue of secondary structure not found: SHEET 3 3 1 ASP A 29 ASP A 32
0
1 messages similar to the above omitted
End residue of secondary structure not found: SHEET 5 5 1 LYS A 55 TYR A 66 0
Start residue of secondary structure not found: SHEET 6 6 1 PHE A 78 TYR A 83
0
Start residue of secondary structure not found: SHEET 7 7 1 ARG A 86 TYR A 90
0
Start residue of secondary structure not found: SHEET 8 8 1 ALA A 114 LEU A
119 0
Start residue of secondary structure not found: SHEET 9 9 1 VAL A 129 GLN A
132 0
Start residue of secondary structure not found: SHEET 10 10 1 CYS A 142 THR A
153 0
6 messages similar to the above omitted
End residue of secondary structure not found: SHEET 17 17 1 TYR A 250 SER A
260 0
Start residue of secondary structure not found: SHEET 18 18 1 ALA A 268 LEU A
276 0
Start residue of secondary structure not found: SHEET 19 19 1 ILE A 289 LEU A
291 0
Start residue of secondary structure not found: SHEET 20 20 1 ILE A 319 SER A
332 0
Start residue of secondary structure not found: SHEET 21 21 1 SER A 340 MET A
352 0
dual colored dimers overlay .pdb title:
Crystal structure of xenopus laevis arrestin 1 - P3221 crystal form [more
info...]
Chain information for dual colored dimers overlay .pdb
---
Chain | Description | UniProt
1.1/A 1.2/A | S-arrestin | ARRS_XENLA
1.3/A | S-arrestin | ARRS_XENLA
1.3/D | No description available |
> hide #1.1 models
> show #1.1 models
> hide #1.2 models
> show #1.2 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> hide #1.1 models
> show #1.1 models
> hide #1.2 models
> show #1.2 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> hide #1.2 models
> hide #1.1 models
> hide #!1 models
> show #!1 models
> show #1.2 models
> hide #1.2 models
> show #1.2 models
> show #1.1 models
> hide #1.1 models
> show #1.1 models
> hide #!1.3 models
> show #!1.3 models
> hide #1.1 models
> show #1.1 models
> hide #1.2 models
> select #1.1/A
2762 atoms, 2820 bonds, 352 residues, 1 model selected
> select #1.2/A
2762 atoms, 2820 bonds, 352 residues, 1 model selected
> select #1.3/A
2983 atoms, 3042 bonds, 1 pseudobond, 380 residues, 2 models selected
> hide #!1.3 models
> show #!1.3 models
> select #1.3/D
2983 atoms, 3042 bonds, 1 pseudobond, 380 residues, 2 models selected
> hide (#!1.3 & sel) target a
> delete atoms (#!1.3 & sel)
> delete bonds (#!1.3 & sel)
> select #1.1/A
2762 atoms, 2820 bonds, 352 residues, 1 model selected
> ui tool show "Color Actions"
> color sel deep pink
> select #1.2/A
2762 atoms, 2820 bonds, 352 residues, 1 model selected
> select #1.3/A
2983 atoms, 3042 bonds, 1 pseudobond, 380 residues, 2 models selected
> color sel light sea green
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #1.1/A
Alignment identifier is 1.1/A
> sequence chain #1.2/A
Alignment identifier is 1.2/A
> sequence chain #1.3/A
Alignment identifier is 1.3/A
> select #1.3/A:30
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.3/A:30
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.1/A:29
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:29
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.3/A:175
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.3/A:175
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.1/A:171
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.1/A:171
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.3/A:303
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.3/A:303
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.3/A:296
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.3/A:296
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.1/A:299
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:299
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.1/A:292
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:292
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.1/A:292
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:292
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:292
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:292
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add #1.1/A:171
19 atoms, 17 bonds, 2 residues, 1 model selected
> select add #1.3/A:303
27 atoms, 24 bonds, 3 residues, 2 models selected
> select add #1.1/A:29
35 atoms, 31 bonds, 4 residues, 2 models selected
> view sel
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select #1.3/A:296
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.3/A:296
8 atoms, 7 bonds, 1 residue, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> ~label sel residues
> select #1.1/A:299
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:299
8 atoms, 7 bonds, 1 residue, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select #1.3/A:303
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.3/A:303
8 atoms, 7 bonds, 1 residue, 1 model selected
> ~label sel residues
> select clear
> save "C:/Windows/System32/polar core overlay of xArr1 and bArr1.cxs"
[Errno 13] Permission denied: 'C:/Windows/System32/polar core overlay of xArr1
and bArr1.cxs.8464.tmp'
> save "C:/Cassandra/Chimera Images/polar core overlay of xArr1 and bArr1.pdb"
> save "C:/Cassandra/Chimera Images/polar core overlay of xArr1 and bArr1.png"
> width 1301 height 754 supersample 3
> select #1.1/A#1.2/A#1.3/A
8507 atoms, 8682 bonds, 1 pseudobond, 1084 residues, 4 models selected
> view sel
> select clear
> select #1.1/A:8
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.1/A:8-11
36 atoms, 36 bonds, 4 residues, 1 model selected
> show sel atoms
> select #1.3/A:189
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.3/A:189
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.3/A:10
10 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.3/A:10-13
36 atoms, 37 bonds, 4 residues, 1 model selected
> select #1.3/A:10
10 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.3/A:10-12
25 atoms, 25 bonds, 3 residues, 1 model selected
> select #1.3/A:9
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.3/A:9-12
33 atoms, 33 bonds, 4 residues, 1 model selected
> show sel atoms
> select #1.1/A:24
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #1.1/A:24
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.3/A:25
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #1.3/A:25
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.1/A:102
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.1/A:102
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.1/A:106
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:106
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.1/A:110
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:110
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.3/A:103
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.3/A:103
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.3/A:107
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.3/A:107
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.3/A:111
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.3/A:111
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1.3/A:375
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #1.3/A:375-377
29 atoms, 30 bonds, 3 residues, 1 model selected
> show sel atoms
> select clear
> select #1.1/A#1.2/A#1.3/A
8507 atoms, 8682 bonds, 1 pseudobond, 1084 residues, 4 models selected
> ui tool show Contacts
> contacts interModel false ignoreHiddenModels true
3607 contacts
> hide #!1.1 models
> show #!1.1 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> hide #!1.3 models
> show #!1.1 models
> show #!1.3 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> select #1.1/A:8
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.1/A:8-11
36 atoms, 36 bonds, 4 residues, 1 model selected
> select #1.1/A:75
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1.1/A:75
4 atoms, 3 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #1.1/A:24
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #1.1/A:24
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #1.1/A:357
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:352-357
48 atoms, 50 bonds, 9 pseudobonds, 6 residues, 2 models selected
> select #1.1/A:24
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #1.1/A:24-28
44 atoms, 44 bonds, 2 pseudobonds, 5 residues, 2 models selected
> select #1.1/A:21
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.1/A:21-25
40 atoms, 40 bonds, 6 pseudobonds, 5 residues, 2 models selected
> show sel atoms
> select #1.1/A:23
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.1/A:23-25
27 atoms, 27 bonds, 3 pseudobonds, 3 residues, 2 models selected
> select #1.1/A:21
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1.1/A:21-23
20 atoms, 19 bonds, 3 residues, 1 model selected
> hide sel atoms
> show sel atoms
[Repeated 1 time(s)]
> hide sel atoms
> select
> #1.1/A:12-15,22-25,29-32,40-45,55-66,78-83,86-90,114-119,129-132,142-153,166-174,185-190,199-204,209-211,216-224,230-243,250-260,268-276,289-291,319-332,340-352
1285 atoms, 1291 bonds, 666 pseudobonds, 160 residues, 2 models selected
> select #1.1/A:25
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:25
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select clear
> select #1.1/A:357
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1.1/A:357
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> close session
> open C:/Users/barnesc/Downloads/3ugu.pdb
3ugu.pdb title:
Crystal structure of P44 (splice variant of visual arrestin) [more info...]
Chain information for 3ugu.pdb #1
---
Chain | Description | UniProt
A | S-arrestin | ARRS_BOVIN
> open "C:/Cassandra/Chimera Images/Crystal form 2 with reasonable F193
> geometries.pdb"
Crystal form 2 with reasonable F193 geometries.pdb title:
Crystal structure of xenopus laevis arrestin 1 - P3221 crystal form [more
info...]
Chain information for Crystal form 2 with reasonable F193 geometries.pdb
---
Chain | Description | UniProt
2.1/A | S-arrestin | ARRS_XENLA
2.2/A 2.3/A 2.4/A 2.5/A | S-arrestin | ARRS_XENLA
> select #2.1/A
2762 atoms, 2820 bonds, 352 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #2.2/A
2762 atoms, 2820 bonds, 352 residues, 1 model selected
> select #2.3/A
2762 atoms, 2820 bonds, 352 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #2.4/A
2762 atoms, 2820 bonds, 352 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> show target ab
> hide atoms
> select #2.5/A
2762 atoms, 2820 bonds, 352 residues, 1 model selected
> select #2.2/A
2762 atoms, 2820 bonds, 352 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> ui tool show Matchmaker
> matchmaker #1/A to #2.5/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Crystal form 2 with reasonable F193 geometries.pdb, chain A (#2.5)
with 3ugu.pdb, chain A (#1), sequence alignment score = 1394.7
RMSD between 262 pruned atom pairs is 0.962 angstroms; (across all 342 pairs:
2.299)
> toolshed show
Downloading bundle MolecularDynamicsViewer-1.4-py3-none-any.whl
Errors may have occurred when running pip:
pip standard error:
\---
[notice] A new release of pip available: 22.2.2 -> 23.1.2
[notice] To update, run: C:\Program Files\ChimeraX\bin\ChimeraX.exe -m pip
install --upgrade pip
\---
pip standard output:
\---
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/
Processing c:\users\barnesc\downloads\moleculardynamicsviewer-1.4-py3-none-
any.whl
Requirement already satisfied: ChimeraX-Core>=1.2.5 in c:\program
files\chimerax\bin\lib\site-packages (from MolecularDynamicsViewer==1.4) (1.5)
Installing collected packages: MolecularDynamicsViewer
Successfully installed MolecularDynamicsViewer-1.4
\---
Successfully installed MolecularDynamicsViewer-1.4
Installed MolecularDynamicsViewer (1.4)
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #2.5/A
Alignment identifier is 2.5/A
> select
> #2.5/A:12-15,22-25,29-32,40-45,55-66,78-83,86-90,114-119,129-132,142-153,166-174,185-190,199-204,209-211,216-224,230-243,250-260,268-276,289-291,319-332,340-352
1285 atoms, 1291 bonds, 160 residues, 1 model selected
> select #1/A:30
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:30
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/A:175
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:175
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select #2.5/A:29
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2.5/A:29
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #2.5/A:171
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2.5/A:171
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/A:296
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:296
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #2.5/A:292
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2.5/A:292
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #2.5/A:299
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2.5/A:299
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/A:303
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:303
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> save "C:/Cassandra/Chimera Images/xArr1 form 2 overlay with p44.cxs"
> close session
> open "C:\Cassandra\Chimera Images\P3221_xl_form2.pdb" format pdb
P3221_xl_form2.pdb title:
\--- [more info...]
Chain information for P3221_xl_form2.pdb #1
---
Chain | Description
A | No description available
> open C:/Users/barnesc/Downloads/4zwj.pdb
4zwj.pdb title:
Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser
[more info...]
Chain information for 4zwj.pdb #2
---
Chain | Description | UniProt
A B C D | chimera protein of human rhodopsin, mouse S-arrestin, and T4
endolysin | ARRS_MOUSE
> ui tool show Matchmaker
>
Missing command
>
Missing command
>
Missing command
> select #1/A
2754 atoms, 2812 bonds, 350 residues, 1 model selected
> select #2/A
6565 atoms, 6725 bonds, 2 pseudobonds, 833 residues, 2 models selected
> delete atoms (#!2 & sel)
> delete bonds (#!2 & sel)
> select #2/B
5296 atoms, 5435 bonds, 2 pseudobonds, 673 residues, 2 models selected
> delete atoms (#!2 & sel)
> delete bonds (#!2 & sel)
> select #2/C
6231 atoms, 6385 bonds, 3 pseudobonds, 789 residues, 2 models selected
> delete atoms (#!2 & sel)
> delete bonds (#!2 & sel)
> ui tool show Matchmaker
>
Missing command
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>
data[0] == pself.attr_name and (setattr(pself, "value", pself.get_attribute())
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\options\options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\options\options.py", line 342, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 517.37
OpenGL renderer: Quadro P1000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: en_US.cp1252
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows
Manufacturer: Dell Inc.
Model: Precision 3630 Tower
OS: Microsoft Windows 10 Enterprise (Build 19045)
Memory: 34,181,038,080
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-8700 CPU @ 3.20GHz
OSLanguage: en-US
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2022.9.24
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
comtypes: 1.1.10
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
MolecularDynamicsViewer: 1.4
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pywin32: 303
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
WMI: 1.5.1
zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Structure Comparison |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Matchmaker: 'NoneType' object has no attribute 'setChecked' |
comment:2 by , 3 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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Duplicate of #8476