Opened 2 years ago

Closed 2 years ago

#8924 closed defect (duplicate)

'textureSampler' : syntax error

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warnings | QOpenGLShader::compile(Fragment): ERROR: 4:1: 'textureSampler' :
syntax error syntax error  
  
  
*** Problematic Fragment shader source code ***  
#version 110  
#ifdef GL_KHR_blend_equation_advanced  
#extension GL_ARB_fragment_coord_conventions : enable  
#extension GL_KHR_blend_equation_advanced : enable  
#endif  
#define lowp  
#define mediump  
#define highp  
#line 1  
varying highp vec2 uv;uniform sampler2DRect textureSampler;uniform bool
swizzle;uniform highp float opacity;void main() { highp vec4 tmpFragColor =
texture2DRect(textureSampler,uv); tmpFragColor.a *= opacity; gl_FragColor =
swizzle ? tmpFragColor.bgra : tmpFragColor;}  
***  
  
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/Workshop/Molecules/pvagans/vina/pvagans/withmini_kollam/M2.pdb

M2.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) lit3_A163CY271C [more
info...]  
  
Chain information for M2.pdb #1  
---  
Chain | Description  
B | No description available  
  

> rainbow

> ui tool show "Add Hydrogens"

> addh

Summary of feedback from adding hydrogens to M2.pdb #1  
---  
notes | No usable SEQRES records for M2.pdb (#1) chain B; guessing termini
instead  
Chain-initial residues that are actual N termini: /B ASP 27  
Chain-initial residues that are not actual N termini:  
Chain-final residues that are actual C termini: /B PRO 418  
Chain-final residues that are not actual C termini:  
388 hydrogen bonds  
3021 hydrogens added  
  

> close session

> open C:/Workshop/Molecules/pvagans/vina/pvagans/withmini_kollam/M2_387.pdb

Chain information for M2_387.pdb #1  
---  
Chain | Description  
B | No description available  
  

> rainbow

> select add #1

3090 atoms, 3162 bonds, 393 residues, 1 model selected  

> select subtract #1

Nothing selected  

> ui tool show "Add Hydrogens"

> addh

Summary of feedback from adding hydrogens to M2_387.pdb #1  
---  
notes | No usable SEQRES records for M2_387.pdb (#1) chain B; guessing termini
instead  
Chain-initial residues that are actual N termini: /B ASP 27  
Chain-initial residues that are not actual N termini:  
Chain-final residues that are actual C termini: /B PRO 418  
Chain-final residues that are not actual C termini:  
405 hydrogen bonds  
3028 hydrogens added  
  

> hide cartoons

[Repeated 1 time(s)]

> show cartoons

> hide atoms

[Repeated 1 time(s)]

> show atoms

> select add #1

6118 atoms, 6190 bonds, 393 residues, 1 model selected  

> hide sel atoms

> close session

> open "D:/phd project/Pantoea vagans C9-1/engineering/PVmonomerphyk.pdb"

PVmonomerphyk.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) pantoea vagans phyk [more
info...]  
  
Chain information for PVmonomerphyk.pdb #1  
---  
Chain | Description  
B | No description available  
  

> rainbow

> ui tool show "Add Hydrogens"

> addh

Summary of feedback from adding hydrogens to PVmonomerphyk.pdb #1  
---  
notes | No usable SEQRES records for PVmonomerphyk.pdb (#1) chain B; guessing
termini instead  
Chain-initial residues that are actual N termini: /B ASP 27  
Chain-initial residues that are not actual N termini:  
Chain-final residues that are actual C termini: /B PRO 418  
Chain-final residues that are not actual C termini:  
390 hydrogen bonds  
3025 hydrogens added  
  
Alignment identifier is 1/B  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:163,271

31 atoms, 30 bonds, 2 residues, 1 model selected  

> view sel

> show (sel-residues & sidechain) target ab

> view sel

[Repeated 1 time(s)]

> ui mousemode right distance

> distance /B:271@CB /B:163@CB

Distance between /B TYR 271 CB and ALA 163 CB: 3.748Å  

> ui mousemode right label

> label #1/B:163

> label #1/B:271

> ui mousemode right "move label"

[Repeated 2 time(s)]

> color sel byelement

> label sel atoms attribute element

> hide #2.1 models

> show #2.1 models

> select add #2.1

31 atoms, 30 bonds, 2 residues, 2 models selected  

> select subtract #2.1

31 atoms, 30 bonds, 2 residues, 1 model selected  

> undo

[Repeated 2 time(s)]

> redo

> ~label sel atoms

> ui mousemode right "move label"

> lighting soft

> style sel ball

Changed 31 atom styles  

> style sel stick

Changed 31 atom styles  

> show sel atoms

> view sel

> save C:\Users\Asmi\Desktop\image1.png supersample 3

> select clear

> save C:\Users\Asmi\Desktop\image2.png supersample 3

> set bgColor white

> set bgColor #ffffff00

> lighting simple

> view

> undo

> lighting full

> ui mousemode right "move label"

[Repeated 1 time(s)]

> color #2.1 #ff5500ff models

> color #2.1 #ff557fff models

> color #2.1 #ff5500ff models

> color #2.1 red models

> color #2.1 #be0000ff models

> lighting simple

> lighting soft

> lighting full

> color byhetero

> lighting soft

> lighting simple

> save C:\Users\Asmi\Desktop\image1.png supersample 3

> save "D:/phd project/TAC/15_3_23_TAC/M2.tif" width 798 height 507
> supersample 3

> movie record

> turn y 2 180

> wait 180

> movie encode C:\Users\Asmi\Desktop\movie4.mp4

Movie saved to \C:Users\\...\Desktop\movie4.mp4  
  

> hide #!2 models

> select /B:163,271

31 atoms, 30 bonds, 1 pseudobond, 2 residues, 2 models selected  

> mlp sel

Map values for surface "PVmonomerphyk.pdb_B SES surface": minimum -28.91, mean
-4.599, maximum 22.54  
To also show corresponding color key, enter the above mlp command and add key
true  

> mlp sel

Map values for surface "PVmonomerphyk.pdb_B SES surface": minimum -28.91, mean
-4.599, maximum 22.54  
To also show corresponding color key, enter the above mlp command and add key
true  

> mlp sel

Map values for surface "PVmonomerphyk.pdb_B SES surface": minimum -28.91, mean
-4.599, maximum 22.54  
To also show corresponding color key, enter the above mlp command and add key
true  

> select subtract #1.2

1 model selected  

> select add #1.2

6084 atoms, 392 residues, 1 model selected  

> select subtract #1.2

1 model selected  

> select add #1.1

1 model selected  

> select subtract #1.1

Nothing selected  

> select /B:163,271

31 atoms, 30 bonds, 1 pseudobond, 2 residues, 2 models selected  

> mlp sel

Map values for surface "PVmonomerphyk.pdb_B SES surface": minimum -28.91, mean
-4.599, maximum 22.54  
To also show corresponding color key, enter the above mlp command and add key
true  

> rainbow sel

[Repeated 3 time(s)]

> select add #1

6084 atoms, 6157 bonds, 1 pseudobond, 392 residues, 4 models selected  

> select subtract #1.2

2 models selected  

> select subtract #1.1

Nothing selected  

> select add #1

6084 atoms, 6157 bonds, 1 pseudobond, 392 residues, 3 models selected  

> rainbow sel

> select subtract #1.2

2 models selected  

> select add #1.2

6084 atoms, 392 residues, 2 models selected  

> hide #1.2 models

> show #1.2 models

> hide #1.2 models

> select add #1

6084 atoms, 6157 bonds, 1 pseudobond, 392 residues, 4 models selected  

> select subtract #1

1 model selected  

> select /B:163,271

31 atoms, 30 bonds, 1 pseudobond, 2 residues, 2 models selected  

> color (#!1 & sel) byelement

> ui tool show H-Bonds

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> view sel

> hide (#!1 & sel-residues & (protein|nucleic)) target a

> cartoon hide (#!1 & sel-residues)

> show (#!1 & sel-residues & backbone) target ab

> show (#!1 & sel-residues & sidechain) target ab

> ui tool show H-Bonds

> hbonds sel showDist true twoColors true select true reveal true log true
    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 PVmonomerphyk.pdb
    
    2 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    /B ALA 163 N  /B GLN 159 O  /B ALA 163 H  2.947  1.964
    /B LYS 167 N  /B ALA 163 O  /B LYS 167 H  3.232  2.265
    

  
2 hydrogen bonds found  
1 strict hydrogen bonds found  

> hbonds sel showDist true select true reveal true log true
    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 PVmonomerphyk.pdb
    
    2 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    /B ALA 163 N  /B GLN 159 O  /B ALA 163 H  2.947  1.964
    /B LYS 167 N  /B ALA 163 O  /B LYS 167 H  3.232  2.265
    

  
2 hydrogen bonds found  

> hide #!1.3 models

> select clear

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> ui tool show H-Bonds

> hbonds sel showDist true select true reveal true log true
    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 PVmonomerphyk.pdb
    
    2 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    /B ALA 163 N  /B GLN 159 O  /B ALA 163 H  2.947  1.964
    /B LYS 167 N  /B ALA 163 O  /B LYS 167 H  3.232  2.265
    

  
2 hydrogen bonds found  

> show #!1.3 models

> hide (#!1 & sel-residues & (protein|nucleic)) target a

> cartoon hide (#!1 & sel-residues)

> show (#!1 & sel-residues & backbone) target ab

> show (#!1 & sel-residues & sidechain) target ab

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> hbonds sel showDist true select true reveal true log true
    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 PVmonomerphyk.pdb
    
    4 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    /B ASP 156 N   /B TYR 271 OH   /B ASP 156 H   2.937  2.012
    /B TYR 271 OH  /B GLN 159 OE1  /B TYR 271 HH  2.828  2.049
    /B ARG 275 N   /B TYR 271 O    /B ARG 275 H   2.964  1.975
    /B ARG 275 NE  /B TYR 271 OH   /B ARG 275 HE  2.988  2.025
    

  
4 hydrogen bonds found  

> hbonds sel select true reveal true log true
    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 PVmonomerphyk.pdb
    
    5 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    /B ASP 156 N    /B TYR 271 OH   /B ASP 156 H     2.937  2.012
    /B TYR 271 OH   /B GLN 159 OE1  /B TYR 271 HH    2.828  2.049
    /B ARG 275 N    /B TYR 271 O    /B ARG 275 H     2.964  1.975
    /B ARG 275 NE   /B TYR 271 OH   /B ARG 275 HE    2.988  2.025
    /B ARG 275 NH1  /B GLN 159 OE1  /B ARG 275 HH11  2.737  1.742
    

  
5 hydrogen bonds found  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:163,271

31 atoms, 30 bonds, 1 pseudobond, 2 residues, 2 models selected  

> hbonds sel select true reveal true log true
    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 PVmonomerphyk.pdb
    
    6 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    /B ASP 156 N   /B TYR 271 OH   /B ASP 156 H   2.937  2.012
    /B ALA 163 N   /B GLN 159 O    /B ALA 163 H   2.947  1.964
    /B LYS 167 N   /B ALA 163 O    /B LYS 167 H   3.232  2.265
    /B TYR 271 OH  /B GLN 159 OE1  /B TYR 271 HH  2.828  2.049
    /B ARG 275 N   /B TYR 271 O    /B ARG 275 H   2.964  1.975
    /B ARG 275 NE  /B TYR 271 OH   /B ARG 275 HE  2.988  2.025
    

  
6 hydrogen bonds found  

> view sel

> hide (#!1 & sel-residues & (protein|nucleic)) target a

> cartoon hide (#!1 & sel-residues)

> show (#!1 & sel-residues & backbone) target ab

> show (#!1 & sel-residues & sidechain) target ab

> lighting soft

> color (#!1 & sel) byelement

> select /B:275

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select /B:275

24 atoms, 23 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) byelement

> select /B:159

17 atoms, 16 bonds, 1 residue, 1 model selected  

> select /B:159

17 atoms, 16 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) byelement

> select /B:156

12 atoms, 11 bonds, 1 residue, 1 model selected  

> select /B:156

12 atoms, 11 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) byelement

> select /B:167

22 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:137-167

473 atoms, 475 bonds, 2 pseudobonds, 31 residues, 2 models selected  

> select /B:167

22 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:167

22 atoms, 21 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) byelement

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:163,271

31 atoms, 30 bonds, 1 pseudobond, 2 residues, 2 models selected  

> style sel ball

Changed 31 atom styles  

> style sel stick

Changed 31 atom styles  

> lighting simple

> color #1.3 #5500ffff models

> color #1.3 #0055ffff models

> color #1.3 cyan models

> color #1.3 #009090ff models

> color #1.3 #55aaffff models

> color #1.3 #305f8fff models

> color #1.3 #aa00ffff models

> color #1.3 #3b0059ff models

> color #1.3 #510079ff models

> color #1.3 #ff007fff models

> color #1.3 #550000ff models

> color #1.3 blue models

> color #1.3 #5500ffff models

> color #1.3 #55ffffff models

> color #1.3 #55ff7fff models

> color #1.3 #ffff7fff models

> color #1.3 #ff55ffff models

> color #1.3 #55557fff models

> color #1.3 #0055ffff models

> color #1.3 #003cb4ff models

> ui mousemode right "move label"

> ui mousemode right label

> label delete residues

> label #1/B:275

> label #1/B:156

> label #1/B:159

> label #1/B:271

> label #1/B:163

> label delete residues

> label #1/B:163

> label #1/B:167

> label #1/B:271

> label #1/B:275

> label #1/B:156

> label #1/B:159

> ui mousemode right "move label"

[Repeated 1 time(s)]

> set bgColor black

> set bgColor transparent

> set bgColor white

> set bgColor #ffffff00

> set bgColor black

> set bgColor transparent

> set bgColor white

> set bgColor #ffffff00

> save "D:/phd project/TAC/15_3_23_TAC/M2_hbond.tif" width 1220 height 507
> supersample 3

> select clear

> movie record

> turn y 2 180

> wait 180

> movie encode C:\Users\Asmi\Desktop\movie4.mp4

Movie saved to \C:Users\\...\Desktop\movie4.mp4  
  

> hide #1.3 models

> ui tool show Contacts

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163,271

31 atoms, 30 bonds, 1 pseudobond, 2 residues, 2 models selected  

> contacts sel saveFile "D:/phd project/TAC/15_3_23_TAC/M2_contacts"
> resSeparation 5 ignoreHiddenModels true select true reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    28 contacts
        atom1            atom2       overlap  distance
    /B TYR 271 HH   /B ASP 156 H      0.108    1.892
    /B TYR 271 OH   /B ASP 156 H      0.088    2.012
    /B TYR 271 HH   /B GLN 159 OE1    -0.029    2.049
    /B TYR 271 CE1  /B GLN 159 OE1    -0.119    3.239
    /B TYR 271 HH   /B ASP 156 N      -0.168    2.793
    /B TYR 271 CZ   /B GLN 159 CB     -0.179    3.489
    /B TYR 271 OH   /B THR 155 HA     -0.207    2.707
    /B TYR 271 OH   /B ASP 156 N      -0.212    2.937
    /B TYR 271 CZ   /B GLN 159 OE1    -0.214    3.244
    /B ALA 163 CB   /B TYR 271 HB3    -0.244    2.944
    /B TYR 271 HH   /B ASP 156 HB2    -0.250    2.250
    /B ALA 163 CB   /B VAL 269 CG1    -0.288    3.688
    /B TYR 271 HH   /B GLN 159 HB2    -0.293    2.293
    /B TYR 271 OH   /B THR 155 CA     -0.307    3.507
    /B TYR 271 OH   /B GLN 159 OE1    -0.308    2.828
    /B TYR 271 HE2  /B THR 155 HB     -0.321    2.321
    /B TYR 271 CZ   /B GLN 159 HB2    -0.321    2.931
    /B TYR 271 CE2  /B GLU 160 N      -0.325    3.650
    /B TYR 271 HE2  /B GLU 160 HB2    -0.331    2.331
    /B TYR 271 HE1  /B GLN 159 OE1    -0.336    2.756
    /B TYR 271 CE1  /B GLN 159 HB3    -0.344    3.044
    /B ALA 163 CB   /B TYR 271 CB     -0.348    3.748
    /B TYR 271 CE1  /B GLN 159 CD     -0.351    3.661
    /B TYR 271 CE1  /B GLN 159 CB     -0.352    3.752
    /B ALA 163 CB   /B VAL 269 HG13   -0.354    3.054
    /B ALA 163 HB3  /B VAL 269 HG13   -0.359    2.359
    /B TYR 271 CE2  /B GLN 159 CB     -0.372    3.772
    /B TYR 271 CD2  /B GLU 160 HA     -0.380    3.080
    

  
28 contacts  

> set bgColor black

> set bgColor transparent

> select clear

> hide #1.4 models

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:271

21 atoms, 21 bonds, 1 residue, 1 model selected  

> ui tool show Contacts

> contacts sel resSeparation 5 ignoreHiddenModels true reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    25 contacts
        atom1           atom2       overlap  distance
    /B TYR 271 HH   /B ASP 156 H     0.108    1.892
    /B TYR 271 OH   /B ASP 156 H     0.088    2.012
    /B TYR 271 HH   /B GLN 159 OE1   -0.029    2.049
    /B TYR 271 CE1  /B GLN 159 OE1   -0.119    3.239
    /B TYR 271 HH   /B ASP 156 N     -0.168    2.793
    /B TYR 271 CZ   /B GLN 159 CB    -0.179    3.489
    /B TYR 271 OH   /B THR 155 HA    -0.207    2.707
    /B TYR 271 OH   /B ASP 156 N     -0.212    2.937
    /B TYR 271 CZ   /B GLN 159 OE1   -0.214    3.244
    /B TYR 271 HB3  /B ALA 163 CB    -0.244    2.944
    /B TYR 271 HH   /B ASP 156 HB2   -0.250    2.250
    /B TYR 271 HH   /B GLN 159 HB2   -0.293    2.293
    /B TYR 271 OH   /B THR 155 CA    -0.307    3.507
    /B TYR 271 OH   /B GLN 159 OE1   -0.308    2.828
    /B TYR 271 HE2  /B THR 155 HB    -0.321    2.321
    /B TYR 271 CZ   /B GLN 159 HB2   -0.321    2.931
    /B TYR 271 CE2  /B GLU 160 N     -0.325    3.650
    /B TYR 271 HE2  /B GLU 160 HB2   -0.331    2.331
    /B TYR 271 HE1  /B GLN 159 OE1   -0.336    2.756
    /B TYR 271 CE1  /B GLN 159 HB3   -0.344    3.044
    /B TYR 271 CB   /B ALA 163 CB    -0.348    3.748
    /B TYR 271 CE1  /B GLN 159 CD    -0.351    3.661
    /B TYR 271 CE1  /B GLN 159 CB    -0.352    3.752
    /B TYR 271 CE2  /B GLN 159 CB    -0.372    3.772
    /B TYR 271 CD2  /B GLU 160 HA    -0.380    3.080
    

  
25 contacts  

> show #1.4 models

> contacts sel resSeparation 5 ignoreHiddenModels true select true reveal true
> log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    25 contacts
        atom1           atom2       overlap  distance
    /B TYR 271 HH   /B ASP 156 H     0.108    1.892
    /B TYR 271 OH   /B ASP 156 H     0.088    2.012
    /B TYR 271 HH   /B GLN 159 OE1   -0.029    2.049
    /B TYR 271 CE1  /B GLN 159 OE1   -0.119    3.239
    /B TYR 271 HH   /B ASP 156 N     -0.168    2.793
    /B TYR 271 CZ   /B GLN 159 CB    -0.179    3.489
    /B TYR 271 OH   /B THR 155 HA    -0.207    2.707
    /B TYR 271 OH   /B ASP 156 N     -0.212    2.937
    /B TYR 271 CZ   /B GLN 159 OE1   -0.214    3.244
    /B TYR 271 HB3  /B ALA 163 CB    -0.244    2.944
    /B TYR 271 HH   /B ASP 156 HB2   -0.250    2.250
    /B TYR 271 HH   /B GLN 159 HB2   -0.293    2.293
    /B TYR 271 OH   /B THR 155 CA    -0.307    3.507
    /B TYR 271 OH   /B GLN 159 OE1   -0.308    2.828
    /B TYR 271 HE2  /B THR 155 HB    -0.321    2.321
    /B TYR 271 CZ   /B GLN 159 HB2   -0.321    2.931
    /B TYR 271 CE2  /B GLU 160 N     -0.325    3.650
    /B TYR 271 HE2  /B GLU 160 HB2   -0.331    2.331
    /B TYR 271 HE1  /B GLN 159 OE1   -0.336    2.756
    /B TYR 271 CE1  /B GLN 159 HB3   -0.344    3.044
    /B TYR 271 CB   /B ALA 163 CB    -0.348    3.748
    /B TYR 271 CE1  /B GLN 159 CD    -0.351    3.661
    /B TYR 271 CE1  /B GLN 159 CB    -0.352    3.752
    /B TYR 271 CE2  /B GLN 159 CB    -0.372    3.772
    /B TYR 271 CD2  /B GLU 160 HA    -0.380    3.080
    

  
25 contacts  

> contacts sel saveFile "D:/phd project/TAC/15_3_23_TAC/M2_Y271_contacts"
> resSeparation 5 ignoreHiddenModels true select true reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    31 contacts
        atom1            atom2       overlap  distance
    /B GLN 159 OE1  /B ARG 275 HH11   0.278    1.742
    /B TYR 271 HH   /B ASP 156 H      0.108    1.892
    /B TYR 271 OH   /B ASP 156 H      0.088    2.012
    /B TYR 271 HH   /B GLN 159 OE1    -0.029    2.049
    /B GLN 159 CD   /B ARG 275 HH11   -0.065    2.675
    /B GLN 159 OE1  /B ARG 275 NH1    -0.092    2.737
    /B TYR 271 CE1  /B GLN 159 OE1    -0.119    3.239
    /B ASP 156 N    /B TYR 271 HH     -0.168    2.793
    /B GLN 159 CB   /B TYR 271 CZ     -0.179    3.489
    /B TYR 271 OH   /B THR 155 HA     -0.207    2.707
    /B TYR 271 OH   /B ASP 156 N      -0.212    2.937
    /B TYR 271 CZ   /B GLN 159 OE1    -0.214    3.244
    /B ALA 163 CB   /B TYR 271 HB3    -0.244    2.944
    /B TYR 271 HH   /B ASP 156 HB2    -0.250    2.250
    /B ALA 163 CB   /B VAL 269 CG1    -0.288    3.688
    /B TYR 271 HH   /B GLN 159 HB2    -0.293    2.293
    /B THR 155 CA   /B TYR 271 OH     -0.307    3.507
    /B TYR 271 OH   /B GLN 159 OE1    -0.308    2.828
    /B THR 155 HB   /B TYR 271 HE2    -0.321    2.321
    /B TYR 271 CZ   /B GLN 159 HB2    -0.321    2.931
    /B GLN 159 CD   /B ARG 275 NH1    -0.324    3.559
    /B TYR 271 CE2  /B GLU 160 N      -0.325    3.650
    /B TYR 271 HE2  /B GLU 160 HB2    -0.331    2.331
    /B GLN 159 OE1  /B TYR 271 HE1    -0.336    2.756
    /B TYR 271 CE1  /B GLN 159 HB3    -0.344    3.044
    /B ALA 163 CB   /B TYR 271 CB     -0.348    3.748
    /B TYR 271 CE1  /B GLN 159 CD     -0.351    3.661
    /B GLN 159 CB   /B TYR 271 CE1    -0.352    3.752
    /B ALA 163 CB   /B VAL 269 HG13   -0.354    3.054
    /B GLN 159 CB   /B TYR 271 CE2    -0.372    3.772
    /B TYR 271 CD2  /B GLU 160 HA     -0.380    3.080
    

  
31 contacts  

> hide #1.4 models

> show #1.4 models

> hide #1.4 models

> show #1.4 models

> hide #1.4 models

> show #1.4 models

> select add #1.4

29 atoms, 31 pseudobonds, 8 residues, 3 models selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> view sel

> hide #1.4 models

> select add #1

6084 atoms, 6157 bonds, 38 pseudobonds, 392 residues, 6 models selected  

> show #1.4 models

> hide #1.4 models

> show #1.4 models

> hide #1.4 models

> show #1.4 models

> close session

> open "D:/phd project/Pantoea vagans C9-1/engineering/PVmonomerphyk.pdb"

PVmonomerphyk.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) pantoea vagans phyk [more
info...]  
  
Chain information for PVmonomerphyk.pdb #1  
---  
Chain | Description  
B | No description available  
  

> rainbow

> ui tool show "Add Hydrogens"

> addh

Summary of feedback from adding hydrogens to PVmonomerphyk.pdb #1  
---  
notes | No usable SEQRES records for PVmonomerphyk.pdb (#1) chain B; guessing
termini instead  
Chain-initial residues that are actual N termini: /B ASP 27  
Chain-initial residues that are not actual N termini:  
Chain-final residues that are actual C termini: /B PRO 418  
Chain-final residues that are not actual C termini:  
390 hydrogen bonds  
3025 hydrogens added  
  
Alignment identifier is 1/B  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> hide (sel-residues & (protein|nucleic)) target a

> cartoon hide sel-residues

> show (sel-residues & backbone) target ab

> show (sel-residues & sidechain) target ab

> view sel

> color sel byhetero

> color sel byelement

> label sel atoms

> ui mousemode right label

> label delete residues

> ui mousemode right "map eraser"

> ui mousemode right label

> label delete residues

[Repeated 2 time(s)]

> ui mousemode right label

> label delete residues

> label #1/B:163

> ~label sel atoms

> ui tool show Contacts

> contacts sel resSeparation 5 ignoreHiddenModels true select true reveal true
> log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    5 contacts
        atom1            atom2       overlap  distance
    /B ALA 163 CB   /B TYR 271 HB3    -0.244    2.944
    /B ALA 163 CB   /B VAL 269 CG1    -0.288    3.688
    /B ALA 163 CB   /B TYR 271 CB     -0.348    3.748
    /B ALA 163 CB   /B VAL 269 HG13   -0.354    3.054
    /B ALA 163 HB3  /B VAL 269 HG13   -0.359    2.359
    

  
5 contacts  

> hide (sel-residues & (protein|nucleic)) target a

> cartoon hide sel-residues

> show (sel-residues & backbone) target ab

> show (sel-residues & sidechain) target ab

> contacts sel resSeparation 5 ignoreHiddenModels true select true showDist
> true reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    8 contacts
         atom1            atom2       overlap  distance
    /B VAL 269 HG13  /B LYS 164 HD2    -0.049    2.049
    /B ALA 163 CB    /B TYR 271 HB3    -0.244    2.944
    /B VAL 269 CG1   /B LYS 164 HD2    -0.279    2.979
    /B ALA 163 CB    /B VAL 269 CG1    -0.288    3.688
    /B VAL 269 HG13  /B LYS 164 CD     -0.330    3.030
    /B ALA 163 CB    /B TYR 271 CB     -0.348    3.748
    /B ALA 163 CB    /B VAL 269 HG13   -0.354    3.054
    /B VAL 269 HG13  /B ALA 163 HB3    -0.359    2.359
    

  
8 contacts  

> contacts sel resSeparation 5 ignoreHiddenModels true select true showDist
> true reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    11 contacts
         atom1            atom2       overlap  distance
    /B VAL 269 HG13  /B LYS 164 HD2    -0.049    2.049
    /B LYS 164 HD2   /B VAL 269 HG21   -0.082    2.082
    /B LYS 164 CD    /B VAL 269 HG21   -0.112    2.812
    /B ALA 163 CB    /B TYR 271 HB3    -0.244    2.944
    /B VAL 269 CG1   /B LYS 164 HD2    -0.279    2.979
    /B ALA 163 CB    /B VAL 269 CG1    -0.288    3.688
    /B LYS 164 HD2   /B VAL 269 CG2    -0.309    3.009
    /B VAL 269 HG13  /B LYS 164 CD     -0.330    3.030
    /B ALA 163 CB    /B TYR 271 CB     -0.348    3.748
    /B ALA 163 CB    /B VAL 269 HG13   -0.354    3.054
    /B VAL 269 HG13  /B ALA 163 HB3    -0.359    2.359
    

  
11 contacts  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select /B:163

10 atoms, 9 bonds, 1 residue, 1 model selected  

> ui tool show Contacts

> contacts sel resSeparation 5 ignoreHiddenModels true showDist true reveal
> true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    5 contacts
        atom1            atom2       overlap  distance
    /B ALA 163 CB   /B TYR 271 HB3    -0.244    2.944
    /B ALA 163 CB   /B VAL 269 CG1    -0.288    3.688
    /B ALA 163 CB   /B TYR 271 CB     -0.348    3.748
    /B ALA 163 CB   /B VAL 269 HG13   -0.354    3.054
    /B ALA 163 HB3  /B VAL 269 HG13   -0.359    2.359
    

  
5 contacts  

> contacts sel resSeparation 5 ignoreHiddenModels true showDist true reveal
> true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    5 contacts
        atom1            atom2       overlap  distance
    /B ALA 163 CB   /B TYR 271 HB3    -0.244    2.944
    /B ALA 163 CB   /B VAL 269 CG1    -0.288    3.688
    /B ALA 163 CB   /B TYR 271 CB     -0.348    3.748
    /B ALA 163 CB   /B VAL 269 HG13   -0.354    3.054
    /B ALA 163 HB3  /B VAL 269 HG13   -0.359    2.359
    

  
5 contacts  

> ui mousemode right label

> label #1/B:271

> label #1/B:269

> view sel

> set bgColor white

> set bgColor #ffffff00

> ui mousemode right distance

> ui mousemode right "color key"

> key fontSize 25

> key fontSize 26

> key fontSize 27

> key fontSize 26

> key fontSize 25

> key fontSize 24

> key fontSize 23

> key fontSize 22

> key fontSize 21

> key fontSize 20

> key delete

> ui mousemode right distance

> ui mousemode right label

> label delete residues

> ui mousemode right label

> label delete residues

[Repeated 1 time(s)]

> label #1/B:271

> label #1/B:269

> ui tool show Contacts

> ui tool show Distances

> ui tool show Contacts

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\struct_measure\tool.py", line 626, in clear_status  
if s.apc_status_label.text() == s.apc_status_tip:  
RuntimeError: wrapped C/C++ object of type QLabel has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLabel has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\struct_measure\tool.py", line 626, in clear_status  
if s.apc_status_label.text() == s.apc_status_tip:  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 20.19.15.4835
OpenGL renderer: Intel(R) HD Graphics 4400
OpenGL vendor: Intel

Python: 3.9.11
Locale: en_US.cp1252
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: Dell Inc.
Model: Inspiron 11 - 3148
OS: Microsoft Windows 10 Home Single Language (Build 19045)
Memory: 4,219,842,560
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i3-4030U CPU @ 1.90GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
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    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
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    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
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    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pywin32: 303
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    qtconsole: 5.3.1
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    RandomWords: 0.4.0
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    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    WMI: 1.5.1
    zipp: 3.11.0

Change History (2)

comment:1 by Eric Pettersen, 2 years ago

Component: UnassignedGraphics
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submission'textureSampler' : syntax error

comment:2 by Eric Pettersen, 2 years ago

Resolution: duplicate
Status: assignedclosed
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