![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#8366 closed defect (can't reproduce)
Crash in event loop
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [6089]
Path: /private/var/folders/*/ChimeraX-1.3.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: ???
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [6089]
User ID: 501
Date/Time: 2023-01-23 21:10:32.850 +0530
OS Version: macOS 11.3.1 (20E241)
Report Version: 12
Anonymous UUID: DC6BBD17-4343-9894-9D3E-E0FE9CBC7216
Sleep/Wake UUID: 57F50220-399F-45F6-BCAB-9BC6045A8175
Time Awake Since Boot: 100000 seconds
Time Since Wake: 70 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000018
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x18:
-->
__TEXT 102925000-102926000 [ 4K] r-x/r-x SM=COW /var/folders/*/ChimeraX-1.3.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff206ce946 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff206fd615 pthread_kill + 263
2 libsystem_c.dylib 0x00007fff205e1be5 raise + 26
3 libsystem_platform.dylib 0x00007fff20742d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtCore.abi3.so 0x000000010bfc40ce pyqtBoundSignal_emit(_object*, _object*) + 654
6 org.python.python 0x00000001029ac06d cfunction_call + 125
7 org.python.python 0x000000010296d6cc _PyObject_Call + 140
8 QtCore.abi3.so 0x000000010bfc7957 PyQtSlot::call(_object*, _object*) const + 39
9 QtCore.abi3.so 0x000000010bfc7866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
10 QtCore.abi3.so 0x000000010bfc8455 PyQtSlotProxy::unislot(void**) + 85
11 QtCore.abi3.so 0x000000010bfc83ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
12 QtCore 0x000000010c3a3b9f QObject::event(QEvent*) + 943
13 QtWidgets 0x000000010eb7f9ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
14 QtWidgets 0x000000010eb80e11 QApplication::notify(QObject*, QEvent*) + 497
15 QtWidgets.abi3.so 0x000000010e732db9 sipQApplication::notify(QObject*, QEvent*) + 233
16 QtCore 0x000000010c378a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
17 QtCore 0x000000010c379d79 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 809
18 libqcocoa.dylib 0x000000011ce33259 QCocoaEventDispatcherPrivate::processPostedEvents() + 313
19 libqcocoa.dylib 0x000000011ce339c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
20 com.apple.CoreFoundation 0x00007fff207f6a8c __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
21 com.apple.CoreFoundation 0x00007fff207f69f4 __CFRunLoopDoSource0 + 180
22 com.apple.CoreFoundation 0x00007fff207f67d6 __CFRunLoopDoSources0 + 340
23 com.apple.CoreFoundation 0x00007fff207f519c __CFRunLoopRun + 893
24 com.apple.CoreFoundation 0x00007fff207f475c CFRunLoopRunSpecific + 563
25 com.apple.HIToolbox 0x00007fff28a16203 RunCurrentEventLoopInMode + 292
26 com.apple.HIToolbox 0x00007fff28a15e36 ReceiveNextEventCommon + 284
27 com.apple.HIToolbox 0x00007fff28a15d03 _BlockUntilNextEventMatchingListInModeWithFilter + 70
28 com.apple.AppKit 0x00007fff22ff0b32 _DPSNextEvent + 864
29 com.apple.AppKit 0x00007fff22fef305 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
30 com.apple.AppKit 0x00007fff22fe1679 -[NSApplication run] + 586
31 libqcocoa.dylib 0x000000011ce3262f QCocoaEventDispatcher::processEvents(QFlags) + 2495
32 QtCore 0x000000010c374acf QEventLoop::exec(QFlags) + 431
33 QtCore 0x000000010c379042 QCoreApplication::exec() + 130
34 QtWidgets.abi3.so 0x000000010e824702 meth_QApplication_exec_(_object*, _object*) + 82
35 org.python.python 0x00000001029ac06d cfunction_call + 125
36 org.python.python 0x000000010296d17d _PyObject_MakeTpCall + 365
37 org.python.python 0x0000000102a4561c call_function + 876
38 org.python.python 0x0000000102a42ab3 _PyEval_EvalFrameDefault + 25219
39 org.python.python 0x000000010296d948 function_code_fastcall + 104
40 org.python.python 0x000000010296f98a method_vectorcall + 202
41 org.python.python 0x0000000102a4558c call_function + 732
42 org.python.python 0x0000000102a42ab3 _PyEval_EvalFrameDefault + 25219
43 org.python.python 0x0000000102a46283 _PyEval_EvalCode + 2611
44 org.python.python 0x000000010296d8d1 _PyFunction_Vectorcall + 289
45 org.python.python 0x0000000102a4558c call_function + 732
46 org.python.python 0x0000000102a42b4b _PyEval_EvalFrameDefault + 25371
47 org.python.python 0x0000000102a46283 _PyEval_EvalCode + 2611
48 org.python.python 0x0000000102a3c70b PyEval_EvalCode + 139
49 org.python.python 0x0000000102a39592 builtin_exec + 626
50 org.python.python 0x00000001029ab86a cfunction_vectorcall_FASTCALL + 218
51 org.python.python 0x0000000102a4558c call_function + 732
52 org.python.python 0x0000000102a42b4b _PyEval_EvalFrameDefault + 25371
53 org.python.python 0x0000000102a46283 _PyEval_EvalCode + 2611
54 org.python.python 0x000000010296d8d1 _PyFunction_Vectorcall + 289
55 org.python.python 0x0000000102a4558c call_function + 732
56 org.python.python 0x0000000102a42b4b _PyEval_EvalFrameDefault + 25371
57 org.python.python 0x0000000102a46283 _PyEval_EvalCode + 2611
58 org.python.python 0x000000010296d8d1 _PyFunction_Vectorcall + 289
59 org.python.python 0x0000000102aabe20 pymain_run_module + 208
60 org.python.python 0x0000000102aab537 Py_RunMain + 1431
61 org.python.python 0x0000000102aabb3f pymain_main + 223
62 org.python.python 0x0000000102aaba4b Py_Main + 43
63 edu.ucsf.cgl.ChimeraX 0x0000000102925dc8 main + 120
64 libdyld.dylib 0x00007fff20718f3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff206cad4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff206fdea1 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x000000010437aa9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 2:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff206d11ea kevent64 + 10
1 QtWebEngineCore 0x0000000112690e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000112690cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011261962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001125dd7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000112624a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x0000000112638a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 3:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011262e778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011262f150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011262ec44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 4:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff206d11ea kevent64 + 10
1 QtWebEngineCore 0x0000000112690e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000112690cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011261962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001125dd7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011655df06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x0000000112638a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001126862cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001125ae1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011261962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001125dd7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000112638a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff206cad4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff206fdea1 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x000000011267de18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x00000001139355f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001125ae20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011261962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x00000001125dd7cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000112638a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff206d11ea kevent64 + 10
1 QtWebEngineCore 0x0000000112690e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000112690cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011261962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001125dd7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000112638a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 9:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001125ae20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011261962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x00000001125dd7cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000112638a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001126862cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001125ae1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011261962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001125dd7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000112638a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001126862cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001125ae1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011261962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001125dd7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000112638a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 12:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001126862cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011262e76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011262f150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000011262ed34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 13:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001126862cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001125ae1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011261962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001125dd7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000112638a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001126862cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001125ae1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011261962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001125dd7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000112638a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff207f6c6f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff207f534f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff207f475c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff23176baa _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 16:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001126862cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011262e76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011262ee3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000011262ec74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 17:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011262e778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011262f150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011262ecd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 18:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff206c832a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff206c869c mach_msg + 60
2 QtWebEngineCore 0x0000000112686492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011262e778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011262f150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011262ecd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000112681e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 19:
0 libsystem_pthread.dylib 0x00007fff206f9484 start_wqthread + 0
Thread 20:
0 libsystem_kernel.dylib 0x00007fff206cad4e __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff206fdea1 _pthread_cond_wait + 1298
2 org.python.python 0x0000000102a9bd6c PyThread_acquire_lock_timed + 700
3 org.python.python 0x0000000102aeaa1f acquire_timed + 111
4 org.python.python 0x0000000102aeab30 lock_PyThread_acquire_lock + 48
5 org.python.python 0x0000000102975e54 method_vectorcall_VARARGS_KEYWORDS + 388
6 org.python.python 0x0000000102a4558c call_function + 732
7 org.python.python 0x0000000102a42a92 _PyEval_EvalFrameDefault + 25186
8 org.python.python 0x0000000102a46283 _PyEval_EvalCode + 2611
9 org.python.python 0x000000010296d8d1 _PyFunction_Vectorcall + 289
10 org.python.python 0x0000000102a4558c call_function + 732
11 org.python.python 0x0000000102a42a92 _PyEval_EvalFrameDefault + 25186
12 org.python.python 0x0000000102a46283 _PyEval_EvalCode + 2611
13 org.python.python 0x000000010296d8d1 _PyFunction_Vectorcall + 289
14 org.python.python 0x0000000102a4558c call_function + 732
15 org.python.python 0x0000000102a42a92 _PyEval_EvalFrameDefault + 25186
16 org.python.python 0x000000010296d948 function_code_fastcall + 104
17 org.python.python 0x0000000102a4558c call_function + 732
18 org.python.python 0x0000000102a42a92 _PyEval_EvalFrameDefault + 25186
19 org.python.python 0x000000010296d948 function_code_fastcall + 104
20 org.python.python 0x0000000102a4558c call_function + 732
21 org.python.python 0x0000000102a42a92 _PyEval_EvalFrameDefault + 25186
22 org.python.python 0x000000010296d948 function_code_fastcall + 104
23 org.python.python 0x000000010296f9d2 method_vectorcall + 274
24 org.python.python 0x0000000102aea3c6 t_bootstrap + 70
25 org.python.python 0x0000000102a9b8c9 pythread_wrapper + 25
26 libsystem_pthread.dylib 0x00007fff206fd954 _pthread_start + 224
27 libsystem_pthread.dylib 0x00007fff206f94a7 thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff206f9484 start_wqthread + 0
Thread 22:
0 libsystem_pthread.dylib 0x00007fff206f9484 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000104001e00 rcx: 0x00007fc33a155a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007fc33a155a80 rsp: 0x00007fc33a155a58
r8: 0x00007fc33a155f48 r9: 0xfc1bd92f0b0a8147 r10: 0x0000000104001e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00006000037193b0 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff206ce946 rfl: 0x0000000000000246 cr2: 0x0000700000e0fe98
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
48 8b 05 4d 0c 01 00 5d-c3 0f 1f 00 55 48 89 e5 H..M...]....UH..
48 8b 4f 20 48 8b 81 88-03 00 00 48 89 b1 88 03 H.O H......H....
00 00 5d c3 0f 1f 84 00-00 00 00 00 55 48 89 e5 ..].........UH..
48 89 b7 90 03 00 00 5d-c3 0f 1f 00 55 48 89 e5 H......]....UH..
48 8b 87 90 03 00 00 5d-c3 0f 1f 00 55 48 89 e5 H......]....UH..
48 8b 87 08 01 00 00 5d-c3 0f 1f 00 55 48 89 e5 H......]....UH..
[48]8b 47 18 5d c3 66 0f-1f 44 00 00 55 48 89 e5 H.G.].f..D..UH.. /var/folders/*/ChimeraX-1.3.app/Contents/MacOS/ChimeraX
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0x102d02000 - 0x102d06fff +binascii.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x102d10000 - 0x102d15fff +zlib.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
0x102d1f000 - 0x102d21fff +_bz2.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x102d2a000 - 0x102d5bfff +_lzma.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
0x102d6a000 - 0x102d6bfff +grp.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so
0x102d74000 - 0x102d79fff +_struct.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so
0x102d86000 - 0x102d8efff +math.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x102d9a000 - 0x102d9bfff +_bisect.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
0x102da3000 - 0x102da4fff +_random.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
0x102dad000 - 0x102db1fff +_sha512.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so
0x102dba000 - 0x102dbffff +_json.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x102dc9000 - 0x103184fff +_multiarray_umath.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x1032bd000 - 0x1033d4fff +libgfortran.3.dylib (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x103442000 - 0x103478fff +libquadmath.0.dylib (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x10348c000 - 0x1034a1fff +libgcc_s.1.dylib (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x1034b1000 - 0x1034c0fff +_datetime.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so
0x1034d1000 - 0x1034e8fff +_pickle.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so
0x1034f9000 - 0x103508fff +_multiarray_tests.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
0x103521000 - 0x103523fff +_posixsubprocess.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
0x10352c000 - 0x103530fff +select.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so
0x10353a000 - 0x10354bfff +_ctypes.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so
0x103562000 - 0x103565fff +lapack_lite.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/lapack_lite.cpython-39-darwin.so
0x103572000 - 0x10358dfff +_umath_linalg.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so
0x1035a6000 - 0x1035b9fff +_pocketfft_internal.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so
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0x103e0a000 - 0x103e2bfff +QtWebEngineWidgets.abi3.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtWebEngineWidgets.abi3.so
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0x103eb8000 - 0x103ee3fff +QtPrintSupport (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtPrintSupport.framework/Versions/5/QtPrintSupport
0x103f11000 - 0x103f16fff +QtWebChannel.abi3.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtWebChannel.abi3.so
0x103f2a000 - 0x103fc5fff dyld (851.27) /usr/lib/dyld
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0x10be92000 - 0x10bff1fff +QtCore.abi3.so (0) /var/folders/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtCore.abi3.so
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0x7fff33004000 - 0x7fff33031fff libssl.46.dylib (56.60.2) /usr/lib/libssl.46.dylib
0x7fff33032000 - 0x7fff330e1fff com.apple.DiskImagesFramework (595.101.2 - 595.101.2) /System/Library/PrivateFrameworks/DiskImages.framework/Versions/A/DiskImages
0x7fff33119000 - 0x7fff33128fff com.apple.RemoteServiceDiscovery (1.0 - 1.100.7) /System/Library/PrivateFrameworks/RemoteServiceDiscovery.framework/Versions/A/RemoteServiceDiscovery
0x7fff33186000 - 0x7fff33189fff com.apple.help (1.3.8 - 71) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x7fff3318a000 - 0x7fff33191fff com.apple.EFILogin (2.0 - 2) /System/Library/PrivateFrameworks/EFILogin.framework/Versions/A/EFILogin
0x7fff33192000 - 0x7fff3319dfff libcsfde.dylib (554) /usr/lib/libcsfde.dylib
0x7fff3319e000 - 0x7fff33204fff libcurl.4.dylib (121.100.3) /usr/lib/libcurl.4.dylib
0x7fff33205000 - 0x7fff3320cfff com.apple.LoginUICore (4.0 - 4.0) /System/Library/PrivateFrameworks/LoginUIKit.framework/Versions/A/Frameworks/LoginUICore.framework/Versions/A/LoginUICore
0x7fff3320d000 - 0x7fff3326ffff com.apple.AppSupport (1.0.0 - 29) /System/Library/PrivateFrameworks/AppSupport.framework/Versions/A/AppSupport
0x7fff3330e000 - 0x7fff333d2fff com.apple.GameController (1.0 - 1) /System/Library/Frameworks/GameController.framework/Versions/A/GameController
0x7fff333db000 - 0x7fff333dbfff com.apple.ApplicationServices (48 - 50) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x7fff33458000 - 0x7fff3359cfff com.apple.AppleAccount (1.0 - 1.0) /System/Library/PrivateFrameworks/AppleAccount.framework/Versions/A/AppleAccount
0x7fff3359d000 - 0x7fff335dcfff com.apple.AppleIDSSOAuthentication (1.0 - 1) /System/Library/PrivateFrameworks/AppleIDSSOAuthentication.framework/Versions/A/AppleIDSSOAuthentication
0x7fff336f0000 - 0x7fff336f0fff libHeimdalProxy.dylib (79) /System/Library/Frameworks/Kerberos.framework/Versions/A/Libraries/libHeimdalProxy.dylib
0x7fff337a3000 - 0x7fff337a3fff com.apple.audio.units.AudioUnit (1.14 - 1.14) /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x7fff337c7000 - 0x7fff3380afff com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip
0x7fff3380b000 - 0x7fff33829fff com.apple.DuetActivityScheduler (1.0 - 1) /System/Library/PrivateFrameworks/DuetActivityScheduler.framework/Versions/A/DuetActivityScheduler
0x7fff3383e000 - 0x7fff3384afff com.apple.IntentsFoundation (1.0 - 1) /System/Library/PrivateFrameworks/IntentsFoundation.framework/Versions/A/IntentsFoundation
0x7fff3384b000 - 0x7fff33850fff com.apple.PushKit (1.0 - 1) /System/Library/Frameworks/PushKit.framework/Versions/A/PushKit
0x7fff33851000 - 0x7fff33884fff com.apple.C2 (1.3 - 573) /System/Library/PrivateFrameworks/C2.framework/Versions/A/C2
0x7fff33885000 - 0x7fff338b5fff com.apple.QuickLookThumbnailing (1.0 - 135.4) /System/Library/Frameworks/QuickLookThumbnailing.framework/Versions/A/QuickLookThumbnailing
0x7fff338b6000 - 0x7fff340b7fff com.apple.vision.EspressoFramework (1.0 - 256.4.4) /System/Library/PrivateFrameworks/Espresso.framework/Versions/A/Espresso
0x7fff340b8000 - 0x7fff340cffff com.apple.ANEServices (4.75 - 4.75) /System/Library/PrivateFrameworks/ANEServices.framework/Versions/A/ANEServices
0x7fff341e4000 - 0x7fff341e6fff com.apple.CoreDuetDebugLogging (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDebugLogging.framework/Versions/A/CoreDuetDebugLogging
0x7fff341e7000 - 0x7fff341f3fff com.apple.CoreDuetDaemonProtocol (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDaemonProtocol.framework/Versions/A/CoreDuetDaemonProtocol
0x7fff3476a000 - 0x7fff347bafff com.apple.ChunkingLibrary (334.1 - 334.1) /System/Library/PrivateFrameworks/ChunkingLibrary.framework/Versions/A/ChunkingLibrary
0x7fff3502e000 - 0x7fff35043fff com.apple.CoreML.AppleNeuralEngine (1.0 - 1) /System/Library/PrivateFrameworks/AppleNeuralEngine.framework/Versions/A/AppleNeuralEngine
0x7fff35099000 - 0x7fff35104fff com.apple.audio.midi.CoreMIDI (2.0 - 88) /System/Library/Frameworks/CoreMIDI.framework/Versions/A/CoreMIDI
0x7fff351b8000 - 0x7fff351bbfff com.apple.Cocoa (6.11 - 23) /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff35205000 - 0x7fff355eefff com.apple.AppleMediaServices (1.0 - 1) /System/Library/PrivateFrameworks/AppleMediaServices.framework/Versions/A/AppleMediaServices
0x7fff35626000 - 0x7fff35a72fff com.apple.MediaRemote (1.0 - 1) /System/Library/PrivateFrameworks/MediaRemote.framework/Versions/A/MediaRemote
0x7fff35d61000 - 0x7fff35d68fff com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff365a6000 - 0x7fff365d6fff libtidy.A.dylib (18.1) /usr/lib/libtidy.A.dylib
0x7fff365d7000 - 0x7fff365f7fff com.apple.MarkupUI (1.0 - 383.6) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff365f8000 - 0x7fff3660bfff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff3660c000 - 0x7fff3662ffff com.apple.openscripting (1.7 - 190) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff36630000 - 0x7fff36633fff com.apple.securityhi (9.0 - 55008) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff36634000 - 0x7fff36637fff com.apple.ink.framework (10.15 - 227) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff36638000 - 0x7fff3663bfff com.apple.CommonPanels (1.2.6 - 101) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff3663c000 - 0x7fff36643fff com.apple.ImageCapture (1711.4.2 - 1711.4.2) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff36644000 - 0x7fff37830fff com.apple.JavaScriptCore (16611 - 16611.1.21.161.6) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff3789c000 - 0x7fff379aefff com.apple.AVFCapture (1.0 - 81.37) /System/Library/PrivateFrameworks/AVFCapture.framework/Versions/A/AVFCapture
0x7fff379af000 - 0x7fff37a42fff com.apple.Quagga (47 - 47) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff37a43000 - 0x7fff37c8dfff com.apple.CMCapture (1.0 - 81.37) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff38689000 - 0x7fff38698fff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff38699000 - 0x7fff387c0fff com.apple.QuickLookUIFramework (5.0 - 928.3) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff38c71000 - 0x7fff38cb0fff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff38da8000 - 0x7fff38da8fff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff3945c000 - 0x7fff39463fff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff3beb6000 - 0x7fff3bed8fff com.apple.quicklook.QuickLookSupport (1.0 - 135.4) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3bed9000 - 0x7fff3bf70fff com.apple.AirPlaySync (1.0 - 2770.32.4.7) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3cb00000 - 0x7fff3cb83fff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3cb84000 - 0x7fff3cb87fff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3cb88000 - 0x7fff3cb8bfff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3cc84000 - 0x7fff3cc84fff com.apple.avfoundation (2.0 - 2010.31) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3ce3e000 - 0x7fff3ce5dfff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3d001000 - 0x7fff3d01efff com.apple.sidecar-core (1.0 - 231) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3d01f000 - 0x7fff3d022fff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d43a000 - 0x7fff3d440fff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d5b3000 - 0x7fff3d5cafff com.apple.SafariServices.framework (16611 - 16611.1.21.161.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d779000 - 0x7fff3d784fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d799000 - 0x7fff3d7abfff libmis.dylib (274.100.13) /usr/lib/libmis.dylib
0x7fff3d7ac000 - 0x7fff3d7affff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d7c8000 - 0x7fff3d937fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d938000 - 0x7fff3db93fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3db94000 - 0x7fff3dcaafff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3dcab000 - 0x7fff3dcbcfff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e2df000 - 0x7fff3e341fff com.apple.ImageCaptureCore (1711.4.2 - 1711.4.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e342000 - 0x7fff3e367fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e5b4000 - 0x7fff3e713fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e714000 - 0x7fff3e9f2fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3ea1e000 - 0x7fff3eb4afff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3eb4b000 - 0x7fff3efebfff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3efec000 - 0x7fff3f0d4fff com.apple.PDFKit (1.0 - 950.32.1) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff4101b000 - 0x7fff4101efff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff41443000 - 0x7fff41461fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff439f0000 - 0x7fff43c63fff com.apple.RawCamera.bundle (9.10.0 - 1440) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff444cc000 - 0x7fff444d0fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45e48000 - 0x7fff45e4bfff libpmenergy.dylib (227.100.2) /usr/lib/libpmenergy.dylib
0x7fff46550000 - 0x7fff4655bfff libGPUSupportMercury.dylib (18.5.8) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47b87000 - 0x7fff47bc6fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff48413000 - 0x7fff4842efff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff517ff000 - 0x7fff5189efff com.apple.Symbolication (12.5 - 64544.66.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51a6a000 - 0x7fff51a6dfff libpmsample.dylib (227.100.2) /usr/lib/libpmsample.dylib
0x7fff54114000 - 0x7fff5414afff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55744000 - 0x7fff55747fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff61dc2000 - 0x7fff61ea0fff com.apple.driver.AppleIntelBDWGraphicsMTLDriver (16.2.16 - 16.0.2) /System/Library/Extensions/AppleIntelBDWGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelBDWGraphicsMTLDriver
0x7fff638b1000 - 0x7fff63db8fff com.apple.driver.AppleIntelBDWGraphicsGLDriver (16.2.16 - 16.0.2) /System/Library/Extensions/AppleIntelBDWGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelBDWGraphicsGLDriver
0x7fff6980d000 - 0x7fff69811fff libmetal_timestamp.dylib (31001.184.2) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bc58000 - 0x7fff6bc5efff libCoreFSCache.dylib (200.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bc5f000 - 0x7fff6bc63fff libCoreVMClient.dylib (200.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bc64000 - 0x7fff6bc73fff com.apple.opengl (18.5.8 - 18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bc74000 - 0x7fff6bc76fff libCVMSPluginSupport.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bc77000 - 0x7fff6bc7ffff libGFXShared.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bc80000 - 0x7fff6bcb3fff libGLImage.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bcb4000 - 0x7fff6bcf0fff libGLU.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bcf1000 - 0x7fff6be84fff libGLProgrammability.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6be85000 - 0x7fff6be8ffff libGL.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6be90000 - 0x7fff6c00dfff GLEngine (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6c00e000 - 0x7fff6c036fff GLRendererFloat (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d2cf000 - 0x7fff6d327fff com.apple.opencl (4.5 - 4.5) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e3cd000 - 0x7fff6e3d4fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e3d5000 - 0x7fff6e4bcfff com.apple.audio.AVFAudio (1.0 - 477.84) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6fa3a000 - 0x7fff6fa4cfff com.apple.CMImaging (1.0 - 81.37) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73cd4000 - 0x7fff73cdffff com.apple.SymptomAnalytics (1.0 - 1431.100.22) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73ef5000 - 0x7fff73f0dfff com.apple.SymptomPresentationFeed (1.0 - 1431.100.22) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77a79000 - 0x7fff77a80fff libRosetta.dylib (203.42) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=3.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.8G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 816K 6
CG image 168K 29
CoreAnimation 88K 18
CoreGraphics 12K 2
CoreServices 624K 2
CoreUI image data 1848K 27
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 3.3G 1888
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
Mach message 24K 2
OpenGL GLSL 384K 5
STACK GUARD 88K 22
Stack 154.7M 23
Stack Guard 56.0M 1
VM_ALLOCATE 71.0M 82
__DATA 31.2M 595
__DATA_CONST 22.0M 264
__DATA_DIRTY 1256K 170
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 592.9M 156
__OBJC_RO 70.1M 1
__OBJC_RW 2480K 2
__TEXT 570.9M 571
__UNICODE 588K 1
mapped file 417.7M 52
shared memory 2976K 23
=========== ======= =======
TOTAL 5.5G 3959
TOTAL, minus reserved VM space 5.3G 3959
System Profile:
Network Service: Wi-Fi, AirPort, en0
Thunderbolt Bus: MacBook Air, Apple Inc., 27.2
Boot Volume File System Type: apfs
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 0x483943434E4E4E424C54424C41522D4E5444
Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 0x483943434E4E4E424C54424C41522D4E5444
USB Device: USB 3.0 Bus
USB Device: SanDisk 3.2Gen1
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
USB Device: USB OPTICAL MOUSE
Serial ATA Device: APPLE SSD SM0128G, 121.33 GB
Model: MacBookAir7,2, BootROM 427.0.0.0.0, 2 processors, Dual-Core Intel Core i5, 1.6 GHz, 8 GB, SMC 2.27f2
Graphics: kHW_IntelHDGraphics6000Item, Intel HD Graphics 6000, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x117), Broadcom BCM43xx 1.0 (7.77.111.1 AirPortDriverBrcmNIC-1680.7)
Bluetooth: Version 8.0.4d18, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
Opened run_class001_sharpened.ccp4 as #1, grid size 350,350,350, pixel 1.38,
shown at level 0.024, step 1, values float32
Log from Mon Jan 23 22:46:25 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
Opened run_class001_sharpened.ccp4 as #1, grid size 350,350,350, pixel 1.38,
shown at level 0.024, step 1, values float32
Log from Mon Jan 23 20:26:17 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
Opened run_class001_sharpened.ccp4 as #1, grid size 350,350,350, pixel 1.38,
shown at level 0.024, step 1, values float32
Log from Sat Jan 21 20:23:49 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
Opened run_class001_sharpened.ccp4 as #1, grid size 350,350,350, pixel 1.38,
shown at level 0.024, step 1, values float32
Log from Sat Jan 21 18:04:03 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Volumes/PRIYA_PHD/IICB_PhD/Mycobacterium
> smegmatis/70S_GH2_70S/70S_PtRNA_19.01.23.cxs"
Opened run_class001_sharpened.ccp4 as #1, grid size 350,350,350, pixel 1.38,
shown at level 0.024, step 1, values float32
Log from Fri Jan 20 20:53:16 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Volumes/PRIYA_PHD/IICB_PhD/Mycobacterium
> smegmatis/70S_GH2_70S/70S_PtRNA_19.01.23.cxs"
Opened run_class001_sharpened.ccp4 as #1, grid size 350,350,350, pixel 1.38,
shown at level 0.024, step 1, values float32
Log from Thu Jan 19 20:22:47 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "/Volumes/PRIYA_PHD/IICB_PhD/Mycobacterium
> smegmatis/70S_GH2_70S/70S+PtRNA.cxs" format session
Opened run_class001_sharpened.ccp4 as #1, grid size 350,350,350, pixel 1.38,
shown at level 0.024, step 1, values float32
Log from Wed Jan 18 22:23:41 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Volumes/PRIYA_PHD/IICB_PhD/Mycobacterium
> smegmatis/70S_GH2_70S/run_class001_sharpened.ccp4"
Opened run_class001_sharpened.ccp4 as #1, grid size 350,350,350, pixel 1.38,
shown at level 0.0492, step 2, values float32
> volume #1 step 1
> volume #1 level 0.03573
> volume #1 level 0.02878
> open "/Volumes/PRIYA_PHD/IICB_PhD/Mycobacterium
> smegmatis/70S_GH2_70S/70S+PtRNA.pdb"
Chain information for 70S+PtRNA.pdb #2
---
Chain | Description
0 | No description available
1 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> style sphere
Changed 151462 atom styles
> hide atoms
> show cartoons
> volume #1 level 0.02313
> volume #1 level 0.024
> ui tool show "Fit to Segments"
> ui tool show "Segment Map"
Segmenting run_class001_sharpened.ccp4, density threshold 0.024002
Showing 405 region surfaces
6919 watershed regions, grouped to 405 regions
Showing run_class001_sharpened.seg - 405 regions, 405 surfaces
> hide #!1 models
Ungrouped to 2 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
[Repeated 1 time(s)]
> select clear
Ungrouped to 2 regions
Ungrouped to 7 regions
Ungrouped to 5 regions
Ungrouped to 0 regions
Grouped 5 regions
Grouped 3 regions
Ungrouped to 2 regions
Ungrouped to 7 regions
Ungrouped to 18 regions
Ungrouped to 0 regions
Grouped 3 regions
Grouped 12 regions
Grouped 3 regions
Grouped 2 regions
Ungrouped to 6 regions
Ungrouped to 14 regions
Ungrouped to 12 regions
Ungrouped to 3 regions
Ungrouped to 2 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Grouped 10 regions
Grouped 6 regions
Grouped 11 regions
Grouped 5 regions
Grouped 2 regions
Ungrouped to 3 regions
Ungrouped to 13 regions
Ungrouped to 15 regions
Ungrouped to 0 regions
Grouped 7 regions
Grouped 3 regions
> show atoms
> style ball
Changed 151462 atom styles
Showing 435 region surfaces
Ungrouped to 3 regions
Ungrouped to 7 regions
> select clear
Grouped 8 regions
Grouped 2 regions
Grouped 6 regions
Grouped 3 regions
Ungrouped to 9 regions
> select clear
Grouped 5 regions
Grouped 11 regions
Ungrouped to 3 regions
[Repeated 1 time(s)]Ungrouped to 0 regions
Grouped 4 regions
Grouped 2 regions
[Repeated 1 time(s)]Ungrouped to 4 regions
Ungrouped to 15 regions
Ungrouped to 11 regions
Ungrouped to 0 regions
> save "/Volumes/PRIYA_PHD/IICB_PhD/Mycobacterium
> smegmatis/70S_GH2_70S/70S+PtRNA.cxs"
Grouped 2 regions
Grouped 6 regions
Showing 435 region surfaces
Grouped 4 regions
Grouped 2 regions
Showing 431 region surfaces
Ungrouped to 0 regions
Grouped 3 regions
Ungrouped to 4 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Drag select of 9475, 40 of 16736 triangles, 8846, 51 of 10648 triangles, 9630,
5 of 8076 triangles, 9165, 21 of 6664 triangles, 9445, 7 of 4664 triangles,
9423, 11 of 4484 triangles, 3634, 18 of 2464 triangles, 3331, 9 of 1372
triangles, 1 residues
> select clear
Grouped 6 regions
Grouped 3 regions
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
Grouped 4 regions
> select clear
Showing 425 region surfaces
Ungrouped to 3 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
Grouped 3 regions
[Repeated 1 time(s)]Grouped 2 regions
> select clear
Showing 424 region surfaces
Grouped 1 regions
[Repeated 2 time(s)]Ungrouped to 1 regions
[Repeated 2 time(s)]Ungrouped to 2 regions
Ungrouped to 7 regions
Ungrouped to 15 regions
Ungrouped to 0 regions
Ungrouped to 8 regions
Ungrouped to 23 regions
Ungrouped to 24 regions
Ungrouped to 0 regions
Grouped 4 regions
Ungrouped to 0 regions
Drag select of 3 residues, 1 bonds
Grouped 5 regions
Grouped 2 regions
> select clear
Grouped 4 regions
Showing 467 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]Showing 465 region surfaces
Grouped 6 regions
Grouped 3 regions
[Repeated 1 time(s)]Grouped 2 regions
Showing 455 region surfaces
> select clear
Ungrouped to 2 regions
Ungrouped to 3 regions
> select clear
Ungrouped to 0 regions
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
Showing 456 region surfaces
Grouped 4 regions
Grouped 2 regions
Grouped 4 regions
Grouped 2 regions
[Repeated 2 time(s)]Showing 446 region surfaces
> select clear
[Repeated 1 time(s)]
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
Grouped 1 regions
Showing 446 region surfaces
Grouped 2 regions
[Repeated 2 time(s)]
> select clear
Grouped 1 regions
Showing 443 region surfaces
Grouped 2 regions
Showing 442 region surfaces
Ungrouped to 3 regions
Ungrouped to 11 regions
[Repeated 1 time(s)]Ungrouped to 0 regions
Grouped 2 regions
Showing 459 region surfaces
Grouped 3 regions
Grouped 4 regions
Grouped 3 regions
> select clear
Ungrouped to 0 regions
Ungrouped to 750 regions
Grouped 5 regions
Showing 969 region surfaces
Grouped 2 regions
Showing 968 region surfaces
> select clear
Grouped 2 regions
Showing 967 region surfaces
[Repeated 1 time(s)]Grouped 2 regions
> select clear
Ungrouped to 3 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
Grouped 3 regions
Showing 968 region surfaces
Grouped 2 regions
[Repeated 2 time(s)]Ungrouped to 4 regions
Ungrouped to 9 regions
Ungrouped to 0 regions
Grouped 1 regions
Ungrouped to 0 regions
Grouped 2 regions
Grouped 3 regions
Grouped 2 regions
[Repeated 2 time(s)]
> select clear
> save "/Volumes/PRIYA_PHD/IICB_PhD/Mycobacterium
> smegmatis/70S_GH2_70S/70S+PtRNA.cxs"
Ungrouped to 4 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Grouped 4 regions
Grouped 7 regions
Showing 967 region surfaces
> select clear
Ungrouped to 6 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Grouped 5 regions
Grouped 2 regions
Grouped 6 regions
Grouped 4 regions
> select clear
Grouped 3 regions
Showing 962 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 17 regions
Ungrouped to 28 regions
Ungrouped to 0 regions
Ungrouped to 4 regions
Ungrouped to 19 regions
Ungrouped to 0 regions
> select clear
Grouped 2 regions
Grouped 5 regions
Showing 1008 region surfaces
Grouped 2 regions
Grouped 10 regions
Grouped 7 regions
Grouped 4 regions
Ungrouped to 3 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Grouped 6 regions
Grouped 5 regions
> select clear
Ungrouped to 6 regions
Ungrouped to 0 regions
Grouped 6 regions
Grouped 3 regions
Grouped 2 regions
Showing 985 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 9 regions
Ungrouped to 14 regions
Ungrouped to 0 regions
[Repeated 1 time(s)]Grouped 7 regions
Showing 994 region surfaces
Grouped 2 regions
Grouped 3 regions
> select clear
Grouped 5 regions
Grouped 3 regions
> select clear
Grouped 2 regions
[Repeated 2 time(s)]
> select clear
> save "/Volumes/PRIYA_PHD/IICB_PhD/Mycobacterium
> smegmatis/70S_GH2_70S/70S+PtRNA.cxs"
Showing 982 region surfaces
[Repeated 1 time(s)]
> select clear
[Repeated 1 time(s)]Grouped 2 regions
> select clear
Ungrouped to 2 regions
Ungrouped to 0 regions
Grouped 2 regions
Showing 981 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
Ungrouped to 7 regions
Ungrouped to 11 regions
Ungrouped to 0 regions
> hide #!2 models
Ungrouped to 3 regions
Ungrouped to 2 regions
Ungrouped to 9 regions
Ungrouped to 7 regions
Ungrouped to 9 regions
Ungrouped to 13 regions
Ungrouped to 14 regions
Ungrouped to 15 regions
Ungrouped to 2 regions
Ungrouped to 7 regions
Ungrouped to 9 regions
[Repeated 1 time(s)]Ungrouped to 2 regions
Ungrouped to 5 regions
Ungrouped to 10 regions
Ungrouped to 12 regions
Ungrouped to 7 regions
Ungrouped to 3 regions
> select clear
> show #!2 models
> hide #!2 models
Drag select of 2331, 2199, 2554, 2629, 1832, 2410, 1550, 1834, 2477, 1131,
1215, 1037, 1040, 1273, 1032, 1212, 1865, 1278, 1259, 1758, 1154, 1227, 2000,
1926, 1650, 1630, 1191, 1320, 1691, 1323, 1779, 1644, 1647, 1281, 1776, 1514,
781, 785, 833, 989, 1290, 1757, 1629, 1687, 1756, 1831, 1911, 1505, 1087,
1203, 878, 1027, 1205, 1039, 1397, 1566, 822, 875, 823, 777, 1061, 1115, 832,
778, 632, 930, 698, 511, 427, 434, 738, 697, 551, 627, 630, 1255, 1013, 867,
1079, 2279, 969, 1200, 1139, 919, 1135, 1501, 1771, 1556, 1327, 2212, 1920,
775, 874, 693, 1504, 1137, 1206, 1440, 1781, 1928, 1140, 774, 9727
Grouped 100 regions
Showing 994 region surfaces
> show #!2 models
Grouped 7 regions
> select add /D:96
7 atoms, 6 bonds, 1 residue, 3 models selected
Grouped 3 regions
> select clear
Grouped 3 regions
[Repeated 1 time(s)]Grouped 5 regions
Showing 978 region surfaces
> select clear
Ungrouped to 9 regions
Ungrouped to 10 regions
Ungrouped to 0 regions
Ungrouped to 2 regions
Ungrouped to 0 regions
Ungrouped to 2 regions
Ungrouped to 12 regions
Ungrouped to 0 regions
Grouped 6 regions
Grouped 3 regions
Grouped 4 regions
Showing 994 region surfaces
> select clear
Showing 994 region surfaces
Grouped 4 regions
Ungrouped to 9 regions
Ungrouped to 27 regions
Ungrouped to 0 regions
Grouped 5 regions
> select clear
[Repeated 1 time(s)]Showing 1016 region surfaces
Grouped 3 regions
> select clear
[Repeated 1 time(s)]Showing 1014 region surfaces
Grouped 2 regions
[Repeated 2 time(s)]
> select clear
Showing 1011 region surfaces
> save "/Volumes/PRIYA_PHD/IICB_PhD/Mycobacterium
> smegmatis/70S_GH2_70S/70S+PtRNA.cxs"
——— End of log from Wed Jan 18 22:23:41 2023 ———
opened ChimeraX session
Showing run_class001_sharpened.seg - 1011 regions, 1011 surfaces
Showing 1011 region surfaces
> hide atoms
> show atoms
> select clear
Ungrouped to 3 regions
Ungrouped to 6 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
> hide #!2 models
Drag select of 2091, 2094, 1609, 1611, 1603, 1421, 1535, 1823, 2397, 2183,
1967, 1962, 1743
Grouped 13 regions
Showing 1011 region surfaces
> hide #!3 models
> show #!3 models
> show #!2 models
Grouped 3 regions
[Repeated 1 time(s)]
> select clear
> hide atoms
Grouped 4 regions
Ungrouped to 2 regions
[Repeated 1 time(s)]Ungrouped to 0 regions
Grouped 4 regions
> select clear
Showing 1003 region surfaces
> select clear
Ungrouped to 2 regions
Ungrouped to 7 regions
Ungrouped to 0 regions
> hide #!2 models
Drag select of 2428, 1857, 1925, 2141, 2502, 1706, 1775, 2571
Grouped 8 regions
Showing 1002 region surfaces
Grouped 2 regions
> show #!2 models
> select clear
Ungrouped to 4 regions
Ungrouped to 10 regions
Ungrouped to 0 regions
Ungrouped to 2 regions
Ungrouped to 7 regions
Ungrouped to 0 regions
Grouped 3 regions
Drag select of 8907, 13 of 5284 triangles, 9103, 6 of 7008 triangles, 9234, 7
of 8424 triangles, 9307, 5 of 5492 triangles, 9339, 5 of 3508 triangles, 6
residues
Grouped 15 regions
Grouped 8 regions
> select clear
Ungrouped to 0 regions
Grouped 2 regions
Grouped 4 regions
> select clear
[Repeated 1 time(s)]Grouped 2 regions
Ungrouped to 0 regions
Showing 990 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 5 regions
[Repeated 1 time(s)]Ungrouped to 0 regions
Grouped 8 regions
Grouped 4 regions
Grouped 6 regions
> hide #!2 models
> select clear
Grouped 2 regions
[Repeated 1 time(s)]Showing 979 region surfaces
> select clear
> show #!2 models
> select clear
[Repeated 1 time(s)]Grouped 3 regions
> show atoms
> hide atoms
Grouped 6 regions
Grouped 2 regions
Showing 971 region surfaces
Grouped 2 regions
> select clear
Grouped 7 regions
Grouped 2 regions
> select clear
Ungrouped to 12 regions
Ungrouped to 14 regions
Ungrouped to 0 regions
> show atoms
> hide atoms
Grouped 6 regions
Showing 976 region surfaces
> select clear
Ungrouped to 2 regions
Ungrouped to 4 regions
Ungrouped to 12 regions
Ungrouped to 19 regions
Ungrouped to 28 regions
Ungrouped to 18 regions
Ungrouped to 36 regions
Ungrouped to 57 regions
Ungrouped to 4 regions
Ungrouped to 8 regions
> hide #!2 models
> select clear
Drag select of 3027, 3901, 3106, 3183, 836, 645 of 1824 triangles, 885, 1002
of 1276 triangles, 1373, 1483, 4004, 3909, 3740, 3814, 4073, 4074, 3808, 3895,
4064, 4246, 1052, 1169, 2242, 2871, 2663, 3416, 3656, 3256, 2868, 3023, 3485,
2094, 1823, 1535, 1611, 2397, 2183, 1603, 2091, 1609, 1967, 1421, 1962, 1743,
4180, 4353, 4080, 3660, 4542, 4081, 4357, 3829, 4351, 4699, 4444, 3744, 9731,
97 of 8596 triangles, 9685, 3455 of 6040 triangles, 9678
Grouped 57 regions
> select clear
Drag select of 1917, 2121, 2831, 2909, 2207, 2123, 2419, 2212, 2204, 2279,
2697, 2268, 1699, 1560, 1561, 9757, 9756, 9805, 11687 of 51664 triangles
Grouped 18 regions
Grouped 2 regions
> show #!2 models
Showing 1040 region surfaces
> save /Users/apple/Desktop/70S_PtRNA_19.01.23.cxs
——— End of log from Thu Jan 19 20:22:47 2023 ———
opened ChimeraX session
Showing run_class001_sharpened.seg - 1040 regions, 1040 surfaces
> show atoms
Grouped 2 regions
[Repeated 2 time(s)]
> select clear
> hide atoms
Ungrouped to 8 regions
Ungrouped to 20 regions
Ungrouped to 0 regions
Grouped 3 regions
Grouped 5 regions
Grouped 10 regions
Grouped 3 regions
Showing 1042 region surfaces
Grouped 2 regions
> show atoms
Grouped 2 regions
> select clear
Showing 1040 region surfaces
[Repeated 1 time(s)]Grouped 3 regions
Grouped 6 regions
> select clear
Ungrouped to 4 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Grouped 3 regions
Showing 1039 region surfaces
Grouped 2 regions
> hide atoms
Showing 1038 region surfaces
> select clear
Grouped 4 regions
Grouped 2 regions
Grouped 6 regions
Grouped 2 regions
> show atoms
Ungrouped to 11 regions
Ungrouped to 21 regions
Ungrouped to 0 regions
Grouped 10 regions
Grouped 2 regions
Grouped 11 regions
Grouped 2 regions
> show atoms
> hide atoms
Grouped 3 regions
Showing 1029 region surfaces
> select clear
Grouped 2 regions
Ungrouped to 4 regions
[Repeated 1 time(s)]Ungrouped to 0 regions
Grouped 5 regions
> select clear
Ungrouped to 6 regions
Ungrouped to 11 regions
Ungrouped to 0 regions
Grouped 9 regions
> show atoms
Grouped 4 regions
Showing 1030 region surfaces
Grouped 2 regions
> select clear
Showing 1029 region surfaces
Grouped 2 regions
Grouped 3 regions
Ungrouped to 3 regions
Ungrouped to 0 regions
> select clear
[Repeated 1 time(s)]Grouped 2 regions
Grouped 4 regions
Grouped 3 regions
> hide atoms
> select clear
[Repeated 1 time(s)]Ungrouped to 3 regions
Ungrouped to 12 regions
Ungrouped to 0 regions
> hide #!2 models
Drag select of 5448, 5527, 5593, 5943, 5709, 5710, 5450, 4874, 5184, 5253,
4798, 5183
Grouped 11 regions
> show #!2 models
> show atoms
Showing 1023 region surfaces
> hide atoms
Grouped 3 regions
> select clear
[Repeated 2 time(s)]Showing 1021 region surfaces
> show atoms
Showing 1021 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]Showing 1019 region surfaces
[Repeated 1 time(s)]Grouped 2 regions
[Repeated 2 time(s)]Ungrouped to 3 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
Ungrouped to 2 regions
Ungrouped to 7 regions
Ungrouped to 0 regions
Grouped 3 regions
Grouped 2 regions
[Repeated 1 time(s)]Grouped 4 regions
Grouped 2 regions
[Repeated 1 time(s)]
> hide atoms
Grouped 2 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
> show atoms
> hide atoms
Grouped 4 regions
Showing 1017 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 6 regions
Ungrouped to 7 regions
Ungrouped to 0 regions
Grouped 6 regions
Ungrouped to 3 regions
Ungrouped to 0 regions
> show atoms
> hide atoms
Ungrouped to 2 regions
Ungrouped to 0 regions
Grouped 4 regions
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
Grouped 3 regions
Showing 1016 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
[Repeated 1 time(s)]Ungrouped to 8 regions
Ungrouped to 7 regions
Ungrouped to 0 regions
Grouped 5 regions
Showing 1020 region surfaces
Grouped 2 regions
> show atoms
> hide atoms
Grouped 4 regions
Showing 1016 region surfaces
> select clear
> show atoms
> hide atoms
Showing 1016 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 0 regions
Showing 1015 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]
> show atoms
> hide atoms
Grouped 2 regions
Showing 1012 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
[Repeated 1 time(s)]Grouped 2 regions
Ungrouped to 5 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Grouped 4 regions
Grouped 2 regions
> select clear
> save "/Volumes/PRIYA_PHD/IICB_PhD/Mycobacterium
> smegmatis/70S_GH2_70S/70S_PtRNA_19.01.23.cxs"
——— End of log from Fri Jan 20 20:53:16 2023 ———
opened ChimeraX session
Showing run_class001_sharpened.seg - 1014 regions, 1014 surfaces
> hide #!2 models
> select clear
[Repeated 1 time(s)]
> show #!2 models
Showing 1014 region surfaces
[Repeated 1 time(s)]Grouped 2 regions
> show atoms
Grouped 3 regions
Grouped 2 regions
[Repeated 1 time(s)]Showing 1009 region surfaces
Ungrouped to 2 regions
Ungrouped to 4 regions
Ungrouped to 9 regions
Ungrouped to 11 regions
Ungrouped to 0 regions
Showing 1025 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
[Repeated 1 time(s)]Grouped 3 regions
> hide atoms
Grouped 2 regions
Showing 1020 region surfaces
Grouped 2 regions
> select clear
[Repeated 1 time(s)]
> show atoms
Grouped 2 regions
Ungrouped to 0 regions
Ungrouped to 3 regions
Ungrouped to 10 regions
Ungrouped to 0 regions
Ungrouped to 3 regions
Ungrouped to 9 regions
Ungrouped to 0 regions
Ungrouped to 16 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Ungrouped to 3 regions
Ungrouped to 6 regions
Ungrouped to 0 regions
Showing 1061 region surfaces
Grouped 2 regions
Grouped 8 regions
Grouped 2 regions
Grouped 5 regions
Grouped 3 regions
Grouped 2 regions
> select clear
Grouped 5 regions
Grouped 4 regions
Showing 1038 region surfaces
Grouped 2 regions
Grouped 4 regions
> select clear
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
Showing 1032 region surfaces
Grouped 2 regions
Showing 1031 region surfaces
Grouped 2 regions
> select clear
[Repeated 1 time(s)]Ungrouped to 16 regions
Ungrouped to 24 regions
Ungrouped to 0 regions
> hide atoms
Ungrouped to 7 regions
Ungrouped to 12 regions
Ungrouped to 3 regions
> select clear
[Repeated 3 time(s)]Ungrouped to 0 regions
Grouped 3 regions
> show atoms
Grouped 4 regions
Grouped 2 regions
Grouped 10 regions
Ungrouped to 0 regions
Grouped 2 regions
Showing 1057 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]
> hide atoms
> select clear
Ungrouped to 15 regions
Ungrouped to 29 regions
Ungrouped to 0 regions
> select clear
Ungrouped to 6 regions
Ungrouped to 3 regions
Ungrouped to 0 regions
[Repeated 1 time(s)]
> show atoms
Grouped 11 regions
Showing 1084 region surfaces
Grouped 2 regions
Grouped 6 regions
Grouped 2 regions
> select clear
[Repeated 1 time(s)]Grouped 7 regions
Grouped 2 regions
> select clear
Grouped 6 regions
Showing 1065 region surfaces
Grouped 2 regions
> select clear
[Repeated 2 time(s)]Ungrouped to 12 regions
Ungrouped to 16 regions
Ungrouped to 0 regions
Ungrouped to 19 regions
Ungrouped to 24 regions
Ungrouped to 0 regions
Grouped 5 regions
Grouped 12 regions
Grouped 6 regions
Ungrouped to 6 regions
Ungrouped to 12 regions
Grouped 11 regions
Ungrouped to 0 regions
Showing 1100 region surfaces
> select clear
Grouped 2 regions
Grouped 4 regions
Grouped 2 regions
Grouped 6 regions
Grouped 3 regions
Grouped 4 regions
[Repeated 1 time(s)]
> select clear
Showing 1082 region surfaces
Grouped 2 regions
> select clear]
Expected an objects specifier or a keyword
Grouped 4 regions
Ungrouped to 4 regions
> select clear]
Expected an objects specifier or a keyword
> select clear
Grouped 3 regions
Grouped 5 regions
Grouped 2 regions
> select clear
Showing 1074 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 0 regions
Grouped 6 regions
Showing 1068 region surfaces
Grouped 2 regions
> select clear
> save /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
> hide atoms
> hide #!2 models
> select clear
> show #!2 models
> show atoms
> hide atoms
> show atoms
Showing 1067 region surfaces
Grouped 2 regions
[Repeated 2 time(s)]
> hide atoms
Showing 1064 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 6 regions
Ungrouped to 13 regions
Ungrouped to 0 regions
Grouped 3 regions
Showing 1076 region surfaces
Grouped 2 regions
> select clear
[Repeated 1 time(s)]Grouped 8 regions
Grouped 2 regions
> select clear
Showing 1067 region surfaces
Grouped 2 regions
> show atoms
Showing 1066 region surfaces
> hide atoms
> select clear
Ungrouped to 5 regions
Ungrouped to 12 regions
Ungrouped to 0 regions
Grouped 8 regions
Showing 1071 region surfaces
Grouped 2 regions
> show atoms
> hide atoms
Grouped 5 regions
> show atoms
> hide atoms
Grouped 7 regions
> show atoms
> hide atoms
Showing 1060 region surfaces
> select clear
Grouped 5 regions
Grouped 3 regions
[Repeated 1 time(s)]Grouped 2 regions
Ungrouped to 2 regions
Ungrouped to 5 regions
Ungrouped to 17 regions
Ungrouped to 25 regions
Ungrouped to 19 regions
Ungrouped to 50 regions
Ungrouped to 0 regions
Showing 1140 region surfaces
Ungrouped to 3 regions
Ungrouped to 5 regions
Ungrouped to 0 regions
Ungrouped to 13 regions
Ungrouped to 21 regions
Ungrouped to 0 regions
Grouped 5 regions
Grouped 2 regions
> select clear
Ungrouped to 3 regions
Ungrouped to 2 regions
Ungrouped to 0 regions
Ungrouped to 3 regions
Ungrouped to 7 regions
Ungrouped to 0 regions
> show atoms
> hide atoms
Grouped 8 regions
Grouped 2 regions
Grouped 4 regions
Ungrouped to 4 regions
> select clear
Grouped 3 regions
[Repeated 1 time(s)]Grouped 6 regions
Showing 1159 region surfaces
Grouped 2 regions
Grouped 5 regions
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
[Repeated 1 time(s)]Ungrouped to 6 regions
Ungrouped to 9 regions
Ungrouped to 0 regions
Ungrouped to 8 regions
Ungrouped to 17 regions
Ungrouped to 0 regions
Ungrouped to 13 regions
Ungrouped to 29 regions
Ungrouped to 0 regions
> show atoms
Grouped 1 regions
Grouped 2 regions
[Repeated 1 time(s)]Showing 1212 region surfaces
> select clear
Grouped 5 regions
Grouped 2 regions
> save /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
> select clear
Ungrouped to 3 regions
Ungrouped to 5 regions
Ungrouped to 0 regions
Grouped 8 regions
Grouped 2 regions
Grouped 7 regions
Ungrouped to 0 regions
> select add /A:909@N2
1 atom, 1 residue, 3 models selected
> select subtract /A:909@N2
2 models selected
Grouped 3 regions
> hide atoms
Ungrouped to 3 regions
> select clear
[Repeated 1 time(s)]Ungrouped to 0 regions
> show atoms
Showing 1198 region surfaces
> select clear
Grouped 2 regions
[Repeated 1 time(s)]Grouped 5 regions
Grouped 2 regions
> select clear
Ungrouped to 2 regions
[Repeated 1 time(s)]Ungrouped to 0 regions
Grouped 3 regions
Showing 1191 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 0 regions
[Repeated 1 time(s)]Grouped 2 regions
Ungrouped to 0 regions
Grouped 2 regions
Showing 1188 region surfaces
Grouped 2 regions
> select clear
Grouped 3 regions
[Repeated 1 time(s)]
> select clear
> hide #!2 models
> select clear
> show #!2 models
> hide atoms
Ungrouped to 0 regions
Grouped 11 regions
Grouped 3 regions
> show atoms
> hide atoms
Ungrouped to 2 regions
Ungrouped to 5 regions
Ungrouped to 0 regions
Grouped 3 regions
Grouped 2 regions
Grouped 3 regions
Grouped 1 regions
Grouped 2 regions
[Repeated 1 time(s)]Showing 1168 region surfaces
> select clear
[Repeated 1 time(s)]Ungrouped to 2 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
> show atoms
> hide atoms
Grouped 3 regions
> show atoms
Grouped 2 regions
> hide atoms
> show atoms
> hide atoms
Grouped 2 regions
Grouped 5 regions
Showing 1164 region surfaces
Grouped 2 regions
> select clear
[Repeated 1 time(s)]Ungrouped to 5 regions
Ungrouped to 13 regions
Ungrouped to 0 regions
> show atoms
> hide atoms
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/apple/Desktop/movie1.mp4
Movie saved to /Users/apple/Desktop/movie1.mp4
> show atoms
Grouped 10 regions
Grouped 2 regions
Showing 1166 region surfaces
Grouped 2 regions
> hide atoms
Showing 1165 region surfaces
> select clear
> hide #!2 models
> show #!2 models
> select clear
Grouped 2 regions
Ungrouped to 2 regions
[Repeated 1 time(s)]Ungrouped to 0 regions
Grouped 3 regions
Showing 1164 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 3 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
Grouped 3 regions
Showing 1165 region surfaces
Grouped 2 regions
> select clear
Grouped 6 regions
> select clear
Showing 1159 region surfaces
Grouped 2 regions
> select clear
[Repeated 1 time(s)]Showing 1158 region surfaces
Grouped 2 regions
> select clear
Grouped 2 regions
> show atoms
> hide atoms
Showing 1156 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]
> show atoms
> hide atoms
> select clear
Ungrouped to 4 regions
Ungrouped to 0 regions
> select clear
> show atoms
> hide atoms
Grouped 6 regions
Showing 1152 region surfaces
Grouped 2 regions
Showing 1151 region surfaces
> select clear
[Repeated 1 time(s)]Ungrouped to 0 regions
Grouped 2 regions
> select clear
Showing 1150 region surfaces
Ungrouped to 2 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
Grouped 3 regions
> hide #!3 models
> show #!3 models
> show atoms
Showing 1152 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]
> save /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
——— End of log from Sat Jan 21 18:04:03 2023 ———
opened ChimeraX session
Showing run_class001_sharpened.seg - 1150 regions, 1150 surfaces
> select clear
> hide atoms
Ungrouped to 4 regions
Ungrouped to 5 regions
Ungrouped to 0 regions
Ungrouped to 3 regions
Ungrouped to 0 regions
Grouped 5 regions
Grouped 6 regions
Ungrouped to 2 regions
Ungrouped to 5 regions
Ungrouped to 0 regions
Grouped 6 regions
> show atoms
> hide atoms
Grouped 6 regions
Ungrouped to 0 regions
Grouped 2 regions
> show atoms
> hide atoms
[Repeated 1 time(s)]Grouped 3 regions
Showing 1141 region surfaces
Grouped 2 regions
> select clear
[Repeated 2 time(s)]Ungrouped to 14 regions
Ungrouped to 13 regions
Ungrouped to 0 regions
> show atoms
> hide atoms
> show atoms
> hide atoms
Grouped 4 regions
Grouped 7 regions
[Repeated 1 time(s)]Showing 1142 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 4 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Ungrouped to 3 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
> show atoms
> hide atoms
Grouped 8 regions
Grouped 3 regions
Showing 1143 region surfaces
Grouped 2 regions
> hide atoms
> hide #!2 models
> select clear
> show #!2 models
> select clear
Ungrouped to 5 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Grouped 6 regions
> show atoms
> hide atoms
Grouped 2 regions
[Repeated 3 time(s)]Showing 1142 region surfaces
Grouped 2 regions
> select clear
Grouped 3 regions
Ungrouped to 0 regions
Grouped 3 regions
Ungrouped to 10 regions
Ungrouped to 14 regions
Ungrouped to 0 regions
Grouped 7 regions
Grouped 3 regions
Grouped 2 regions
Showing 1145 region surfaces
Grouped 2 regions
> show atoms
> hide atoms
Grouped 4 regions
> hide #!2 models
> select clear
Ungrouped to 12 regions
Ungrouped to 11 regions
Ungrouped to 0 regions
Ungrouped to 3 regions
Ungrouped to 10 regions
Ungrouped to 0 regions
> show #!2 models
> show atoms
Grouped 2 regions
Grouped 6 regions
Grouped 2 regions
Showing 1160 region surfaces
Grouped 2 regions
> select clear
Grouped 2 regions
> hide atoms
> select clear
Ungrouped to 3 regions
Ungrouped to 0 regions
Grouped 2 regions
Grouped 3 regions
Grouped 2 regions
[Repeated 1 time(s)]Ungrouped to 2 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
Grouped 2 regions
Showing 1157 region surfaces
Grouped 2 regions
> select clear
Grouped 2 regions
> show atoms
Grouped 3 regions
> hide atoms
> show atoms
Grouped 4 regions
Grouped 2 regions
> select clear
> hide atoms
> select clear
> show atoms
> hide atoms
Grouped 2 regions
> show atoms
Showing 1148 region surfaces
Grouped 2 regions
> hide atoms
> hide #!2 models
> show #!2 models
Grouped 7 regions
Showing 1141 region surfaces
> show atoms
> hide atoms
Grouped 5 regions
[Repeated 1 time(s)]Grouped 3 regions
Ungrouped to 3 regions
Ungrouped to 0 regions
Ungrouped to 5 regions
[Repeated 1 time(s)]Ungrouped to 7 regions
> select clear
Grouped 4 regions
Grouped 2 regions
> select clear
[Repeated 1 time(s)]
> show atoms
Grouped 2 regions
[Repeated 1 time(s)]
> hide atoms
> hide #!2 models
> show #!2 models
> show atoms
> hide atoms
Showing 1141 region surfaces
> select clear
> save /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
——— End of log from Sat Jan 21 20:23:49 2023 ———
opened ChimeraX session
Showing run_class001_sharpened.seg - 1141 regions, 1141 surfaces
Ungrouped to 7 regions
Ungrouped to 14 regions
Ungrouped to 0 regions
Grouped 4 regions
Grouped 8 regions
> select clear
[Repeated 1 time(s)]Grouped 8 regions
Showing 1139 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
Ungrouped to 5 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
Grouped 3 regions
> show atoms
> hide atoms
Grouped 3 regions
Showing 1141 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 4 regions
Ungrouped to 8 regions
Ungrouped to 0 regions
[Repeated 2 time(s)]
> show atoms
> hide atoms
Grouped 3 regions
> show atoms
> hide atoms
Grouped 2 regions
Showing 1145 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
[Repeated 1 time(s)]
> show atoms
> hide atoms
Grouped 5 regions
Showing 1139 region surfaces
Grouped 2 regions
> select clear
[Repeated 1 time(s)]Ungrouped to 0 regions
Grouped 4 regions
Showing 1135 region surfaces
Grouped 2 regions
> show atoms
Grouped 3 regions
Showing 1132 region surfaces
Grouped 1 regions
Grouped 2 regions
> hide atoms
> select clear
Grouped 8 regions
Showing 1124 region surfaces
Grouped 2 regions
> show atoms
Showing 1123 region surfaces
> select clear
> hide atoms
Grouped 6 regions
Ungrouped to 6 regions
> select clear
[Repeated 1 time(s)]
> show atoms
> hide atoms
Grouped 4 regions
Showing 1120 region surfaces
Grouped 2 regions
> select clear
> show atoms
Showing 1119 region surfaces
Grouped 2 regions
> select clear
> hide atoms
> select clear
Grouped 2 regions
Showing 1117 region surfaces
Grouped 2 regions
> select clear
Grouped 3 regions
Showing 1114 region surfaces
Grouped 2 regions
> select clear
> select add /P:41
10 atoms, 10 bonds, 1 residue, 3 models selected
> select subtract /P:41
2 models selected
> show atoms
Grouped 3 regions
Showing 1111 region surfaces
Grouped 2 regions
> select clear
> hide atoms
> select clear
[Repeated 1 time(s)]
> show atoms
Grouped 2 regions
Showing 1109 region surfaces
Grouped 2 regions
> hide atoms
> hide #!2 models
> show #!2 models
> select clear
> show atoms
> hide atoms
> show atoms
> hide atoms
Grouped 2 regions
Ungrouped to 3 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
> show atoms
> hide atoms
Grouped 3 regions
Grouped 2 regions
Showing 1108 region surfaces
Grouped 2 regions
Grouped 3 regions
> select clear
> hide #!2 models
> select clear
Ungrouped to 6 regions
Ungrouped to 0 regions
[Repeated 1 time(s)]
> show #!2 models
Grouped 4 regions
Showing 1107 region surfaces
Grouped 2 regions
> select clear
Grouped 5 regions
Showing 1102 region surfaces
Grouped 2 regions
> show atoms
> hide atoms
Grouped 5 regions
> select clear
[Repeated 1 time(s)]Grouped 6 regions
Grouped 9 regions
Showing 1084 region surfaces
Grouped 2 regions
> hide #!2 models
Showing 1083 region surfaces
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> select clear
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
Ungrouped to 0 regions
> hide atoms
> show atoms
Grouped 2 regions
> hide atoms
> show atoms
> hide atoms
Grouped 2 regions
Showing 1079 region surfaces
Grouped 2 regions
> hide atoms
> show atoms
Grouped 2 regions
> select clear
> hide atoms
> hide #!2 models
> show #!2 models
Showing 1077 region surfaces
> save /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
——— End of log from Mon Jan 23 20:26:17 2023 ———
opened ChimeraX session
Showing run_class001_sharpened.seg - 1077 regions, 1077 surfaces
> select clear
[Repeated 1 time(s)]
> show atoms
> hide atoms
Showing 1077 region surfaces
Grouped 2 regions
Ungrouped to 2 regions
Ungrouped to 4 regions
Ungrouped to 0 regions
Ungrouped to 2116 regions
> save /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
Showing 2685 region surfaces
> show atoms
Grouped 6 regions
Ungrouped to 0 regions
Grouped 2 regions
Grouped 5 regions
Grouped 6 regions
> hide atoms
> select clear
Ungrouped to 5 regions
Ungrouped to 0 regions
Grouped 7 regions
Showing 2667 region surfaces
[Repeated 1 time(s)]Grouped 3 regions
> select clear
> show atoms
Grouped 3 regions
Showing 2663 region surfaces
Grouped 2 regions
> select clear
> hide atoms
> hide #!2 models
> show #!2 models
> select clear
> show atoms
> hide atoms
Grouped 12 regions
> select clear
Showing 2651 region surfaces
Grouped 2 regions
[Repeated 1 time(s)]Grouped 9 regions
> hide #!2 models
> show #!2 models
Grouped 3 regions
> select clear
> hide #!2 models
> select clear
Ungrouped to 11 regions
Ungrouped to 0 regions
> show #!2 models
> hide #!3 models
> show #!3 models
Grouped 9 regions
Grouped 8 regions
Grouped 9 regions
Showing 2625 region surfaces
Grouped 2 regions
Showing 2624 region surfaces
> select clear
> show atoms
> hide atoms
Grouped 4 regions
> hide #!2 models
> show #!2 models
> select clear
[Repeated 1 time(s)]
> show atoms
> hide atoms
Grouped 3 regions
Showing 2619 region surfaces
Grouped 2 regions
> select clear
Grouped 2 regions
> show atoms
> hide atoms
Grouped 2 regions
> select clear
Ungrouped to 0 regions
> show atoms
> hide atoms
Grouped 5 regions
Showing 2612 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 0 regions
> show atoms
> hide atoms
Grouped 6 regions
Showing 2606 region surfaces
Grouped 2 regions
> select clear
Ungrouped to 0 regions
Grouped 5 regions
Showing 2601 region surfaces
Grouped 2 regions
> select clear
> show atoms
> hide atoms
> show atoms
Grouped 4 regions
> hide #!2 models
> select clear
[Repeated 1 time(s)]
> show #!2 models
> hide atoms
[Repeated 1 time(s)]Showing 2597 region surfaces
> select clear
Ungrouped to 5 regions
Ungrouped to 0 regions
Grouped 3 regions
Grouped 4 regions
Ungrouped to 0 regions
Showing 2595 region surfaces
Grouped 2 regions
Grouped 5 regions
> select clear
Ungrouped to 4 regions
Ungrouped to 0 regions
Grouped 3 regions
> select clear
> show atoms
> hide atoms
Grouped 4 regions
Grouped 2 regions
Showing 2587 region surfaces
Grouped 2 regions
> hide #!2 models
> save /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
> show #!2 models
> select clear
Ungrouped to 17 regions
Ungrouped to 0 regions
Grouped 16 regions
Grouped 6 regions
> select clear
[Repeated 1 time(s)]Ungrouped to 9 regions
Ungrouped to 0 regions
Grouped 8 regions
Showing 2577 region surfaces
Grouped 1 regions
Showing 2577 region surfaces
> select clear
[Repeated 2 time(s)]Showing 2577 region surfaces
Grouped 6 regions
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
Ungrouped to 7 regions
Ungrouped to 0 regions
> show atoms
Showing 2576 region surfaces
Grouped 2 regions
> select clear
Grouped 4 regions
Grouped 2 regions
Showing 2571 region surfaces
> save /Users/apple/Desktop/70S_GH2_70S/70S_PtRNA_19.01.23.cxs
——— End of log from Mon Jan 23 22:46:25 2023 ———
opened ChimeraX session
Showing run_class001_sharpened.seg - 2571 regions, 2571 surfaces
OpenGL version: 4.1 INTEL-16.2.16
OpenGL renderer: Intel(R) HD Graphics 6000
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir7,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 1.6 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 427.0.0.0.0
SMC Version (system): 2.27f2
Software:
System Software Overview:
System Version: macOS 11.3.1 (20E241)
Kernel Version: Darwin 20.4.0
Time since boot: 5 days 21:39
Graphics/Displays:
Intel HD Graphics 6000:
Chipset Model: Intel HD Graphics 6000
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x1626
Revision ID: 0x0009
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: LCD
Resolution: 1440 x 900 (Widescreen eXtended Graphics Array Plus)
UI Looks like: 1440 x 900
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in event loop |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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