Crash in Qt event loop after showing Volume Viewer, lots of clipper use

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x0000000204cfa600 (most recent call first):
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in 
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


{"app_name":"ChimeraX","timestamp":"2023-01-14 22:10:24.00 +0100","app_version":"1.4.0","slice_uuid":"9596eff5-d2be-396c-9c4e-6177235c3dae","build_version":"1.4.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.6.1 (21G217)","incident_id":"154AA8A7-0A56-494B-A51B-6F2DBB6864FA","name":"ChimeraX"}
{
  "uptime" : 76000,
  "procLaunch" : "2023-01-14 21:30:14.7765 +0100",
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 1123932377,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro18,1",
  "procStartAbsTime" : 1786085876118,
  "coalitionID" : 3879,
  "osVersion" : {
    "train" : "macOS 12.6.1",
    "build" : "21G217",
    "releaseType" : "User"
  },
  "captureTime" : "2023-01-14 22:10:21.4414 +0100",
  "incident" : "154AA8A7-0A56-494B-A51B-6F2DBB6864FA",
  "bug_type" : "309",
  "pid" : 37746,
  "procExitAbsTime" : 1843850043057,
  "translated" : true,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.4.0","CFBundleVersion":"1.4.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"37EE54C2-F1CA-500B-9FC5-AC1D0B09853B","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "DAA45146-FB36-08E7-E58C-5811F7B25DEC",
  "wakeTime" : 16078,
  "sleepWakeUUID" : "AE05BF12-FE13-466A-AA34-8A8CED7B5AF4",
  "sip" : "enabled",
  "vmRegionInfo" : "0x40 is not in any region.  Bytes before following region: 140722648285120\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      mapped file              7ffc8b768000-7ffc8bda4000 [ 6384K] r-x\/r-x SM=COW  ...t_id=a83299cd",
  "isCorpse" : 1,
  "exception" : {"codes":"0x0000000000000001, 0x0000000000000040","rawCodes":[1,64],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000040"},
  "vmregioninfo" : "0x40 is not in any region.  Bytes before following region: 140722648285120\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      mapped file              7ffc8b768000-7ffc8bda4000 [ 6384K] r-x\/r-x SM=COW  ...t_id=a83299cd",
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
  "threads" : [{"triggered":true,"id":710288,"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":10418774645457983860},"r12":{"value":259},"rosetta":{"tmp2":{"value":140703318913028},"tmp1":{"value":140705739893012},"tmp0":{"value":18446744073709551615}},"rbx":{"value":8670651904,"symbolLocation":0,"symbol":"_main_thread"},"r8":{"value":11},"r15":{"value":22},"r10":{"value":8670651904,"symbolLocation":0,"symbol":"_main_thread"},"rdx":{"value":0},"rdi":{"value":10418774645457983860},"r9":{"value":10418774645457983860},"r13":{"value":6},"rflags":{"value":643},"rax":{"value":0},"rsp":{"value":5287907464},"r11":{"value":140703319682974,"symbolLocation":0,"symbol":"-[__NSCFArray objectAtIndex:]"},"rcx":{"value":0},"r14":{"value":11},"rsi":{"value":5287907464}},"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":32782,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":1},{"imageOffset":25087,"symbol":"pthread_kill","symbolLocation":263,"imageIndex":2},{"imageOffset":279256,"symbol":"raise","symbolLocation":26,"imageIndex":3},{"imageOffset":15869,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":4},{"imageOffset":0,"imageIndex":0},{"imageOffset":17465,"symbol":"_CFGetTSDCreateIfNeeded","symbolLocation":28,"imageIndex":5}]},{"id":710299,"name":"com.apple.rosetta.exceptionserver","frames":[{"imageOffset":18756,"imageIndex":6},{"imageOffset":74720,"imageIndex":6},{"imageOffset":81496,"imageIndex":6}]},{"id":710310,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":7},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710311,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":7},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710312,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":7},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710313,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":7},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710314,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":7},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710315,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":7},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710316,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":7},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710317,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":7},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710318,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":7},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710405,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":1},{"imageOffset":66463178,"imageIndex":8},{"imageOffset":66462919,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":65964109,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710408,"name":"Chrome_IOThread","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":1},{"imageOffset":66463178,"imageIndex":8},{"imageOffset":66462919,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":48397874,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710411,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66258831,"imageIndex":8},{"imageOffset":65429641,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710416,"name":"CompositorTileWorker1","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":66226363,"imageIndex":8},{"imageOffset":100635997,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710417,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66258831,"imageIndex":8},{"imageOffset":65429641,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710418,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":1},{"imageOffset":66463178,"imageIndex":8},{"imageOffset":66462919,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710421,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66258831,"imageIndex":8},{"imageOffset":65429641,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710422,"name":"VizCompositorThread","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":65429544,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710433,"name":"NetworkService","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":1},{"imageOffset":66463178,"imageIndex":8},{"imageOffset":66462919,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710434,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66258831,"imageIndex":8},{"imageOffset":65429641,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710436,"name":"ThreadPoolSingleThreadForegroundBlocking0","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66014559,"imageIndex":8},{"imageOffset":66017292,"imageIndex":8},{"imageOffset":66016365,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710473,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66258831,"imageIndex":8},{"imageOffset":65429641,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710497,"name":"com.apple.NSEventThread","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":521536,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":319,"imageIndex":5},{"imageOffset":515024,"symbol":"__CFRunLoopRun","symbolLocation":1276,"imageIndex":5},{"imageOffset":512020,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":5},{"imageOffset":1755598,"symbol":"_NSEventThread","symbolLocation":132,"imageIndex":9},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710500,"name":"MemoryInfra","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66258831,"imageIndex":8},{"imageOffset":65429641,"imageIndex":8},{"imageOffset":65925532,"imageIndex":8},{"imageOffset":65630200,"imageIndex":8},{"imageOffset":66065496,"imageIndex":8},{"imageOffset":66065898,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":710501,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking1","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66014559,"imageIndex":8},{"imageOffset":66016570,"imageIndex":8},{"imageOffset":66016173,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":715115,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3377823,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":10},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":715116,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3377823,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":10},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":715117,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3377823,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":10},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":715118,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3377823,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":10},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":715119,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3377823,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":10},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":715120,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3377823,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":10},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":715121,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3377823,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":10},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":715122,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3377823,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":10},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":715123,"frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3377823,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":10},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":715835,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66014559,"imageIndex":8},{"imageOffset":66017292,"imageIndex":8},{"imageOffset":66016125,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":716139,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66014559,"imageIndex":8},{"imageOffset":66017292,"imageIndex":8},{"imageOffset":66016269,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":718908,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":719132,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":719862,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":720461,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":720947,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":724358,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":724359,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":724360,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":728291,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":730953,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":730954,"frames":[{"imageOffset":141332,"imageIndex":6}]},{"id":731021,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":140705739893056,"imageIndex":0},{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":1},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":1},{"imageOffset":66259398,"imageIndex":8},{"imageOffset":66014559,"imageIndex":8},{"imageOffset":66016570,"imageIndex":8},{"imageOffset":66016269,"imageIndex":8},{"imageOffset":66229416,"imageIndex":8},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]}],
  "usedImages" : [
  {
    "size" : 0,
    "source" : "A",
    "base" : 0,
    "uuid" : "00000000-0000-0000-0000-000000000000"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703318880256,
    "size" : 229376,
    "uuid" : "0ea0d8ac-c27b-3a71-a59b-ec3a6f116acf",
    "path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
    "name" : "libsystem_kernel.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703319109632,
    "size" : 49152,
    "uuid" : "b5454e27-e8c7-3fdb-b77f-714f1e82e70b",
    "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    "name" : "libsystem_pthread.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703317864448,
    "size" : 561152,
    "uuid" : "e42e9d7a-03b4-340b-b61e-dcd45fd4acc0",
    "path" : "\/usr\/lib\/system\/libsystem_c.dylib",
    "name" : "libsystem_c.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703319207936,
    "size" : 40960,
    "uuid" : "a8a33774-6d44-35e9-ad2a-bad9e4d5192a",
    "path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
    "name" : "libsystem_platform.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703319425024,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.CoreFoundation",
    "size" : 5246976,
    "uuid" : "bddb824d-15df-3210-88e8-6aac5c154403",
    "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
    "name" : "CoreFoundation",
    "CFBundleVersion" : "1866"
  },
  {
    "source" : "P",
    "arch" : "arm64",
    "base" : 140703125262336,
    "size" : 196608,
    "uuid" : "419e294c-6e25-389b-a0f2-b3d7c56a046e",
    "path" : "\/usr\/libexec\/rosetta\/runtime",
    "name" : "runtime"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4610121728,
    "size" : 63488000,
    "uuid" : "10431d8f-5e3b-3bbc-abd5-81f6a73a5269",
    "path" : "\/Applications\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
    "name" : "libopenblas64_.0.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 5300748288,
    "size" : 165068800,
    "uuid" : "c9795830-14cd-3b40-983d-a3143cd9cbd9",
    "path" : "\/Applications\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
    "name" : "QtWebEngineCore"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703363133440,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.AppKit",
    "size" : 15269888,
    "uuid" : "d2726161-3c3f-3b59-bd8d-4a088d4545ef",
    "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
    "name" : "AppKit",
    "CFBundleVersion" : "2113.60.148"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 6665846784,
    "size" : 62603264,
    "uuid" : "9112000d-375c-34f0-9a66-9d68f91a12cd",
    "path" : "\/Applications\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/scipy\/.dylibs\/libopenblas.0.dylib",
    "name" : "libopenblas.0.dylib"
  }
],
  "sharedCache" : {
  "base" : 140703315853312,
  "size" : 19331678208,
  "uuid" : "47e1dd7d-5e37-3ec3-a85c-901263ec66b5"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=4.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.1G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               384K        3 \nActivity Tracing                   256K        1 \nCG backing stores                 4032K        4 \nCG image                          6136K       68 \nColorSync                          232K       28 \nCoreAnimation                     15.4M       43 \nCoreGraphics                        12K        2 \nCoreUI image data                 5148K       40 \nFoundation                          48K        2 \nKernel Alloc Once                    8K        1 \nMALLOC                             2.1G      267 \nMALLOC guard page                  192K        9 \nMALLOC_MEDIUM (reserved)         880.0M       10         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           128.0M        1         reserved VM address space (unallocated)\nMach message                        16K        4 \nOpenGL GLSL                        384K        4 \nRosetta Arena                     4096K        2 \nRosetta Generic                   1636K      406 \nRosetta IndirectBranch            2048K        1 \nRosetta JIT                      128.0M        1 \nRosetta Return Stack               960K       96 \nRosetta Thread Context             960K       96 \nSTACK GUARD                         44K       11 \nStack                            159.2M       48 \nStack Guard                       56.2M       37 \nVM_ALLOCATE                      163.9M      334 \nVM_ALLOCATE (reserved)           224.1M       20         reserved VM address space (unallocated)\n__CTF                               756        1 \n__DATA                            47.2M      750 \n__DATA_CONST                      31.1M      342 \n__DATA_DIRTY                      1645K      215 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       749.9M      221 \n__OBJC_RO                         82.8M        1 \n__OBJC_RW                         3200K        2 \n__TEXT                           924.8M      743 \n__UNICODE                          592K        1 \ndyld private memory               1280K        3 \nmapped file                        5.3G     1316 \nshared memory                     3024K       26 \nunshared pmap                     12.7M        8 \n===========                     =======  ======= \nTOTAL                             11.0G     5170 \nTOTAL, minus reserved VM space     9.8G     5170 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "60356660bbe37970735c5624",
      "factorPackIds" : {

      },
      "deploymentId" : 240000027
    },
    {
      "rolloutId" : "5fc94383418129005b4e9ae0",
      "factorPackIds" : {

      },
      "deploymentId" : 240000562
    }
  ],
  "experiments" : [

  ]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/kp337/Documents/Projects/HIV-1-Env/Env-CD4-PGT145/C1/J165/C1.pdb

Chain information for C1.pdb #1  
---  
Chain | Description  
A B C | No description available  
D E F | No description available  
G | No description available  
  

> open /Users/kp337/Documents/Projects/HIV-1-Env/Env-CD4-PGT145/C1/J165/C1.pdb

Chain information for C1.pdb #2  
---  
Chain | Description  
A B C | No description available  
D E F | No description available  
G | No description available  
  

> open /Users/kp337/Documents/Projects/HIV-1-Env/Env-CD4-PGT145/C1/J165/C1.pdb

Chain information for C1.pdb #3  
---  
Chain | Description  
A B C | No description available  
D E F | No description available  
G | No description available  
  

> close #2-3

> open /Users/kp337/Documents/Projects/HIV-1-Env/Env-
> CD4-PGT145/Densmod/ResolveCryoEM_1/denmod_map.ccp4

Opened denmod_map.ccp4 as #2, grid size 360,360,360, pixel 1.08, shown at
level 0.0183, step 2, values float32  

> volume #2 step 1

> volume #2 level 0.1609

> hide atoms

> hide cartoons

> show cartoons

> cview

> clipper associate #2 toModel #1

Opened denmod_map.ccp4 as #1.1.1.1, grid size 360,360,360, pixel 1.08, shown
at level 0.268, step 1, values float32  
Chain information for C1.pdb  
---  
Chain | Description  
1.2/A 1.2/B 1.2/C | No description available  
1.2/D 1.2/E 1.2/F | No description available  
1.2/G | No description available  
  

> isolde start

> set selectionWidth 4

ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...  
ISOLDE: Corrected atom nomenclature of 101 residues in model #1.2 to IUPAC-IUB
standards.  

Window position QRect(1821,534 100x30) outside any known screen, using primary
screen  

Populating font family aliases took 316 ms. Replace uses of missing font
family "Carlito" with one that exists to avoid this cost.  

> set bgColor white

> set bgColor addh

Invalid "bgColor" argument: Invalid color name or specifier  

> open /Users/kp337/Documents/Projects/HIV-1-Env/Env-
> CD4-PGT145/Densmod/ResolveCryoEM_1/denmod_map.ccp4

Opened denmod_map.ccp4 as #2, grid size 360,360,360, pixel 1.08, shown at
level 0.0183, step 2, values float32  

> close #2

> ui tool show "Show Sequence Viewer"

> sequence chain /A /B /C

Alignment identifier is 1  

> select #1/A

7076 atoms, 7160 bonds, 2 pseudobonds, 453 residues, 2 models selected  

> clipper isolate sel maskRadius 4.0 focus false

> select #1/A:30-50

322 atoms, 328 bonds, 20 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> select up

460 atoms, 467 bonds, 30 residues, 1 model selected  

> select up

7076 atoms, 7160 bonds, 453 residues, 1 model selected  

> select #1/A:30-40

172 atoms, 175 bonds, 10 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> hide sel cartoons

> select #1

29965 atoms, 30296 bonds, 9 pseudobonds, 1914 residues, 14 models selected  

> hide sel cartoons

> cview

> select #1/A:40-50

171 atoms, 174 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> select #1/A:50-60

152 atoms, 152 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> select #1/A:60-70

178 atoms, 181 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.5 focus false

> cview

> select #1/A:70-80

145 atoms, 147 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.5 focus false

> cview

> select #1/A:80-90

174 atoms, 175 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> select #1/A:90-100

186 atoms, 188 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> select #1/A:100-110

174 atoms, 174 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> volume #1.1.1.1 level 0.2466

> select #1/A:110-120

175 atoms, 177 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> select #1/A:120-130

180 atoms, 180 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> select #1/A:130-140

158 atoms, 157 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> volume #1.1.1.1 level 0.1644

> select #1/A:140-150

41 atoms, 40 bonds, 3 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> select #1/A:140-150

41 atoms, 40 bonds, 3 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> select #1/A:150-160

173 atoms, 173 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> select #1/A:160-170

190 atoms, 189 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> select #1/A:170-180

202 atoms, 204 bonds, 11 residues, 1 model selected  

> clipper isolate sel maskRadius 4.0 focus false

> cview

> open /Users/kp337/Documents/Projects/HIV-1-Env/Env-CD4-PGT145/C1/J165/C1.pdb

Chain information for C1.pdb #2  
---  
Chain | Description  
A B C | No description available  
D E F | No description available  
G | No description available  
  

> ui tool show "Volume Viewer"


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,1
      Processor Name: Unknown
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 10
      L2 Cache: 20 MB
      Memory: 16 GB

Software:

    System Software Overview:

      System Version: macOS 12.6.1 (21G217)
      Kernel Version: Darwin 21.6.0
      Time since boot: 2 days 5:26

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 16
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.18.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.4
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.0
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0