Opened 3 years ago

Closed 3 years ago

#8090 closed defect (nonchimerax)

Graphics crash, macOS 12.4, Intel Iris Plus Graphics 645

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted

Thread 0x000070001ef34000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000070001df31000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000070001cf2e000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000070001bf2b000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000070001af28000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700019f25000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700018f22000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700017f1f000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700016f1c000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700015f19000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700014f16000 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Current thread 0x00000001169ee600 (most recent call first):
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 1637 in set_multishadow_view
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 227 in _draw_scene
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 165 in draw
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in 
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/8B77825F-5D60-477E-B73F-D10FA1FFF135/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


{"app_name":"ChimeraX","timestamp":"2022-11-27 17:38:38.00 -0800","app_version":"1.4.0","slice_uuid":"9596eff5-d2be-396c-9c4e-6177235c3dae","build_version":"1.4.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.4 (21F79)","incident_id":"12B4C8A3-7D73-40BD-9F29-E520B96061B0","name":"ChimeraX"}
{
  "uptime" : 41000,
  "procLaunch" : "2022-11-26 15:26:13.6931 -0800",
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro15,4",
  "procStartAbsTime" : 381766714858,
  "coalitionID" : 1177,
  "osVersion" : {
    "train" : "macOS 12.4",
    "build" : "21F79",
    "releaseType" : "User"
  },
  "captureTime" : "2022-11-27 17:38:24.5273 -0800",
  "incident" : "12B4C8A3-7D73-40BD-9F29-E520B96061B0",
  "bug_type" : "309",
  "pid" : 1567,
  "procExitAbsTime" : 41547922903586,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Volumes\/VOLUME\/*\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.4.0","CFBundleVersion":"1.4.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"FE8593A6-1515-525E-BBE3-7E5F38F75251","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "CA3597E7-7DF9-8A23-33FE-0342FDD4E3EF",
  "wakeTime" : 1106,
  "bridgeVersion" : {"build":"19P5071","train":"6.5"},
  "sleepWakeUUID" : "4133AA1A-B819-4100-B75E-44C2BF4180D7",
  "sip" : "enabled",
  "isCorpse" : 1,
  "exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
  "ktriageinfo" : "VM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\n",
  "asi" : {"libsystem_c.dylib":["abort() called"]},
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    "path" : "\/Volumes\/VOLUME\/*\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
    "name" : "libopenblas64_.0.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4554338304,
    "size" : 5226496,
    "uuid" : "97d356c9-7652-3ff7-be10-198e30670243",
    "path" : "\/Volumes\/VOLUME\/*\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
    "name" : "QtCore"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4778631168,
    "size" : 6815744,
    "uuid" : "1d3e67c7-22f9-33ac-a03a-446da81fdc43",
    "path" : "\/Volumes\/VOLUME\/*\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
    "name" : "QtGui"
  }
],
  "sharedCache" : {
  "base" : 140703168086016,
  "size" : 15220686848,
  "uuid" : "398acfb4-57f6-31e0-bc82-e9959e5c92ce"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=9.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=9.4G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework              1024K        8 \nActivity Tracing                   256K        1 \nCG backing stores                 2880K        8 \nCG image                          1112K       93 \nColorSync                          236K       28 \nCoreAnimation                     1104K       91 \nCoreGraphics                        16K        3 \nCoreImage                            4K        1 \nCoreUI image data                 5336K       58 \nFoundation                          36K        2 \nKernel Alloc Once                    8K        1 \nMALLOC                             8.5G      857 \nMALLOC guard page                   32K        8 \nMALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           256.0M        1         reserved VM address space (unallocated)\nMach message                        16K        2 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        136K       34 \nStack                            323.3M       35 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      349.4M      128 \n__CTF                               756        1 \n__DATA                            44.8M      676 \n__DATA_CONST                      32.6M      344 \n__DATA_DIRTY                      1641K      213 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       678.2M      147 \n__TEXT                           807.0M      674 \n__UNICODE                          592K        1 \ndyld private memory               1184K        3 \nmapped file                      191.3M       54 \nshared memory                     3004K       32 \n===========                     =======  ======= \nTOTAL                             11.2G     3512 \nTOTAL, minus reserved VM space    11.0G     3512 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "5ffde50ce2aacd000d47a95f",
      "factorPackIds" : {

      },
      "deploymentId" : 240000223
    },
    {
      "rolloutId" : "61af99aeda72d16a4beb7756",
      "factorPackIds" : {
        "SIRI_DIALOG_ASSETS" : "6369252eff18954a57eb0bf4"
      },
      "deploymentId" : 240000409
    }
  ],
  "experiments" : [

  ]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/julianaabramovich/Downloads/cryosparc_P2_J108_003_volume_map.mrc
> format mrc

Opened cryosparc_P2_J108_003_volume_map.mrc as #1, grid size 640,640,640,
pixel 1.56, shown at level 0.226, step 4, values float32  

> volume flip #1 axis y

Opened cryosparc_P2_J108_003_volume_map.mrc y flip as #2, grid size
640,640,640, pixel 1.56, shown at step 1, values float32  

> set bgColor white

> save /Users/julianaabramovich/Desktop/Q8_collided_polysome_11A.png width 864
> height 602 supersample 3

> volume #2 level 0.1909

> save /Users/julianaabramovich/Desktop/Q8_collided_polysome_11A.png width 864
> height 602 supersample 3

> open /Users/julianaabramovich/Downloads/carepackage.cxs format session

Opened cryosparc_P1_J57_009_volume_map_Julianavol2_222A_78667part_finalish.mrc
as #3, grid size 640,640,640, pixel 0.826, shown at level 0.15, step 1, values
float32  
Opened cryosparc_P1_J50_006_volume_map_Julianavol0_292A_33107part_finalish.mrc
as #1, grid size 640,640,640, pixel 0.826, shown at level 0.114, step 1,
values float32  

> set bgColor transparent

opened ChimeraX session  

> set bgColor white

> set bgColor #ffffff00

> set bgColor gray

> set bgColor #80808000

> set bgColor black

> set bgColor transparent

> set bgColor white

> set bgColor #ffffff00

> save
> /Users/julianaabramovich/Desktop/EM_Data/Chimera/data/chimera/png_files/JohnJ57_Q73_tRNA.png
> width 804 height 602 supersample 3

Permission denied writing file
/Users/julianaabramovich/Desktop/EM_Data/Chimera/data/chimera/png_files/JohnJ57_Q73_tRNA.png  

> save
> /Users/julianaabramovich/Desktop/EM_Data/Chimera/data/chimera/png_files/John_Q73)J57.png
> width 804 height 602 supersample 3 transparentBackground true

Permission denied writing file
/Users/julianaabramovich/Desktop/EM_Data/Chimera/data/chimera/png_files/John_Q73)J57.png  

> select add #2

393261 atoms, 409847 bonds, 138 pseudobonds, 18279 residues, 4 models selected  

> select subtract #2

Nothing selected  

> close

> open /Users/julianaabramovich/Downloads/J57_map_preliminary_fit.cif format
> mmcif

Summary of feedback from opening
/Users/julianaabramovich/Downloads/J57_map_preliminary_fit.cif  
---  
warnings | Atom HO5' is not in the residue template for C /L5:1  
Atom HO5' is not in the residue template for C /L8:1  
Atom HO5' is not in the residue template for U /S2:1  
  
Chain information for J57_map_preliminary_fit.cif #1  
---  
Chain | Description  
1 | nascent chain  
CA | Proliferation-associated protein 2G4  
CC | tRNA  
L5 | 28S ribosomal RNA  
L7 | 5S ribosomal RNA  
L8 | 5.8S ribosomal RNA  
LA | 60S ribosomal protein L8  
LB | 60S ribosomal protein L3  
LC | 60S ribosomal protein L4  
LD | 60S ribosomal protein L5  
LE | magnesium ion  
LF | 60S ribosomal protein L7  
LG | 60S ribosomal protein L7a  
LH | 60S ribosomal protein L9  
LI | 60S ribosomal protein L10-like  
LJ | 60S ribosomal protein L11  
LL | 60S ribosomal protein L13  
LM | 60S ribosomal protein L14  
LN | 60S ribosomal protein L15  
LO | 60S ribosomal protein L13a  
LP | 60S ribosomal protein L17  
LQ | 60S ribosomal protein L18  
LR | 60S ribosomal protein L19  
LS | ?  
LT | 60S ribosomal protein L21  
LU | 60S ribosomal protein L22  
LV | 60S ribosomal protein L23  
LW | 60S ribosomal protein L24  
LX | 60S ribosomal protein L23a  
LY | 60S ribosomal protein L26  
LZ | 60S ribosomal protein L27  
La | 60S ribosomal protein L27a  
Lb | 60S ribosomal protein L29  
Lc | 60S ribosomal protein L30  
Ld | 60S ribosomal protein L31  
Le | 60S ribosomal protein L32  
Lf | 60S ribosomal protein L35a  
Lg | 60S ribosomal protein L34  
Lh | 60S ribosomal protein L35  
Li | 60S ribosomal protein L36  
Lj | 60S ribosomal protein L37  
Lk | 60S ribosomal protein L38  
Ll | 60S ribosomal protein L39  
Lm | Ubiquitin-60S ribosomal protein L40  
Ln | 60S ribosomal protein L41  
Lo | 60S ribosomal protein L36a  
Lp | 60S ribosomal protein L37a  
Lr | 60S ribosomal protein L28  
Ls | 60S acidic ribosomal protein P0  
Lt | 60S ribosomal protein L12  
Lz | 60S ribosomal protein L10a  
S2 | 18S ribosomal RNA  
SA | 60S ribosomal protein L28  
SB | 40S ribosomal protein S3a  
SC | 40S ribosomal protein S2  
SD | 40S ribosomal protein S3  
SE | 40S ribosomal protein S4, X isoform  
SF | 40S ribosomal protein S5  
SG | 40S ribosomal protein S6  
SH | 40S ribosomal protein S7  
SI | 40S ribosomal protein S8  
SJ | 40S ribosomal protein S9  
SK | 40S ribosomal protein S10  
SL | 40S ribosomal protein S11  
SM | 40S ribosomal protein S12  
SN | 40S ribosomal protein S13  
SO | 40S ribosomal protein S14  
SP | 40S ribosomal protein S15  
SQ | 40S ribosomal protein S16  
SR | 40S ribosomal protein S17  
SS | 40S ribosomal protein S18  
ST | 40S ribosomal protein S19  
SU | 40S ribosomal protein S20  
SV | 40S ribosomal protein S21  
SW | 40S ribosomal protein S15a  
SX | 40S ribosomal protein S23  
SY | 40S ribosomal protein S24  
SZ | 40S ribosomal protein S25  
Sa | 40S ribosomal protein S26  
Sb | 40S ribosomal protein S27  
Sc | 40S ribosomal protein S28  
Sd | 40S ribosomal protein S29  
Se | 40S ribosomal protein S30  
Sf | Ubiquitin-40S ribosomal protein S27a  
Sg | Receptor of activated protein C kinase 1  
v | tRNA  
w | mRNA  
  

> show cartoons

> hide atoms

> select /Sg

4833 atoms, 4890 bonds, 313 residues, 1 model selected  

> select add #1

393261 atoms, 409847 bonds, 138 pseudobonds, 18279 residues, 4 models selected  

> select subtract #1

Nothing selected  

> save
> /Users/julianaabramovich/Desktop/EM_Data/Chimera/data/chimera/png_files/Q73_class2_preliminarymodel.png
> width 866 height 723 supersample 3

Permission denied writing file
/Users/julianaabramovich/Desktop/EM_Data/Chimera/data/chimera/png_files/Q73_class2_preliminarymodel.png  

> save
> /Users/julianaabramovich/Desktop/EM_Data/Chimera/data/chimera/png_files/Q73_class2_priliminarymodel1.jpg
> width 866 height 723 supersample 3

Permission denied writing file
/Users/julianaabramovich/Desktop/EM_Data/Chimera/data/chimera/png_files/Q73_class2_priliminarymodel1.jpg  

> select /CA

5546 atoms, 5592 bonds, 1 pseudobond, 354 residues, 2 models selected  

> delete atoms (#!1 & sel)

> delete bonds (#!1 & sel)

> select /v

2441 atoms, 2630 bonds, 75 pseudobonds, 76 residues, 2 models selected  

> select /CC

2399 atoms, 2583 bonds, 75 residues, 1 model selected  

> select add #1

387715 atoms, 404255 bonds, 137 pseudobonds, 17925 residues, 4 models selected  

> hide sel cartoons

> select tRNA

Expected an objects specifier or a keyword  

> select #1/v,CC

4840 atoms, 5213 bonds, 75 pseudobonds, 151 residues, 2 models selected  

> show sel cartoons

> select #1/v,CC,chain1

4840 atoms, 5213 bonds, 75 pseudobonds, 151 residues, 2 models selected  

> show sel cartoons

> select #1/v,CC,w,1

5375 atoms, 5776 bonds, 79 pseudobonds, 180 residues, 2 models selected  

> show sel cartoons

> select add #1

387715 atoms, 404255 bonds, 137 pseudobonds, 17925 residues, 4 models selected  

> select subtract #1

Nothing selected  

> show atoms

> hide atoms

> hide cartoons

> select #1/v,CC,w,1

5375 atoms, 5776 bonds, 79 pseudobonds, 180 residues, 2 models selected  

> show sel atoms

> show sel cartoons

> hide sel atoms

> select sel @ ui tool show "Surface Zone"

No surface chosen for zoning  

> close

> open /Users/julianaabramovich/Downloads/CCA-O-Pro-Gln.cxs format session

Opened cryosparc_P1_J57_009_volume_map_Julianavol2_222A_78667part_finalish.mrc
as #3, grid size 640,640,640, pixel 0.826, shown at level 0.14, step 1, values
float32  
Opened cryosparc_P1_J50_006_volume_map_Julianavol0_292A_33107part_finalish.mrc
as #1, grid size 640,640,640, pixel 0.826, shown at level 0.114, step 1,
values float32  

> set bgColor transparent

opened ChimeraX session  

> set bgColor white

> set bgColor #ffffff00

> close

> open /Users/julianaabramovich/Downloads/carepackage.cxs format session

Opened cryosparc_P1_J57_009_volume_map_Julianavol2_222A_78667part_finalish.mrc
as #3, grid size 640,640,640, pixel 0.826, shown at level 0.15, step 1, values
float32  
Opened cryosparc_P1_J50_006_volume_map_Julianavol0_292A_33107part_finalish.mrc
as #1, grid size 640,640,640, pixel 0.826, shown at level 0.114, step 1,
values float32  

> set bgColor transparent

opened ChimeraX session  

> ui tool show "Side View"

> select /w

318 atoms, 341 bonds, 10 residues, 1 model selected  

> set bgColor white

> set bgColor #ffffff00

> select add #2

393261 atoms, 409847 bonds, 138 pseudobonds, 18279 residues, 4 models selected  

> select subtract #2

Nothing selected  

> close

> open /Users/julianaabramovich/Downloads/model_in_Q8_class_4.cxs

> To Restore session:
>
>   * install ISOLDE bundle version 1.4 or newer
>   * install Clipper bundle version 0.18.0 or newer
>

Unable to restore session: need to install missing bundles  

> open /Users/julianaabramovich/Downloads/E-site_tRNA_Vol_J50.mrc format mrc

Opened E-site_tRNA_Vol_J50.mrc as #1, grid size 640,640,640, pixel 0.826,
shown at level 3.99e-06, step 4, values float32  

> volume #1 level 0.07779

> volume #1 step 2

> close

> open /Users/julianaabramovich/Downloads/model_in_Q8_class_4.cxs

> To Restore session:
>
>   * install ISOLDE bundle version 1.4 or newer
>   * install Clipper bundle version 0.18.0 or newer
>

Unable to restore session: need to install missing bundles  

> open /Users/julianaabramovich/Downloads/J57_map_preliminary_fit.cif format
> mmcif

Summary of feedback from opening
/Users/julianaabramovich/Downloads/J57_map_preliminary_fit.cif  
---  
warnings | Atom HO5' is not in the residue template for C /L5:1  
Atom HO5' is not in the residue template for C /L8:1  
Atom HO5' is not in the residue template for U /S2:1  
  
Chain information for J57_map_preliminary_fit.cif #1  
---  
Chain | Description  
1 | nascent chain  
CA | Proliferation-associated protein 2G4  
CC | tRNA  
L5 | 28S ribosomal RNA  
L7 | 5S ribosomal RNA  
L8 | 5.8S ribosomal RNA  
LA | 60S ribosomal protein L8  
LB | 60S ribosomal protein L3  
LC | 60S ribosomal protein L4  
LD | 60S ribosomal protein L5  
LE | magnesium ion  
LF | 60S ribosomal protein L7  
LG | 60S ribosomal protein L7a  
LH | 60S ribosomal protein L9  
LI | 60S ribosomal protein L10-like  
LJ | 60S ribosomal protein L11  
LL | 60S ribosomal protein L13  
LM | 60S ribosomal protein L14  
LN | 60S ribosomal protein L15  
LO | 60S ribosomal protein L13a  
LP | 60S ribosomal protein L17  
LQ | 60S ribosomal protein L18  
LR | 60S ribosomal protein L19  
LS | ?  
LT | 60S ribosomal protein L21  
LU | 60S ribosomal protein L22  
LV | 60S ribosomal protein L23  
LW | 60S ribosomal protein L24  
LX | 60S ribosomal protein L23a  
LY | 60S ribosomal protein L26  
LZ | 60S ribosomal protein L27  
La | 60S ribosomal protein L27a  
Lb | 60S ribosomal protein L29  
Lc | 60S ribosomal protein L30  
Ld | 60S ribosomal protein L31  
Le | 60S ribosomal protein L32  
Lf | 60S ribosomal protein L35a  
Lg | 60S ribosomal protein L34  
Lh | 60S ribosomal protein L35  
Li | 60S ribosomal protein L36  
Lj | 60S ribosomal protein L37  
Lk | 60S ribosomal protein L38  
Ll | 60S ribosomal protein L39  
Lm | Ubiquitin-60S ribosomal protein L40  
Ln | 60S ribosomal protein L41  
Lo | 60S ribosomal protein L36a  
Lp | 60S ribosomal protein L37a  
Lr | 60S ribosomal protein L28  
Ls | 60S acidic ribosomal protein P0  
Lt | 60S ribosomal protein L12  
Lz | 60S ribosomal protein L10a  
S2 | 18S ribosomal RNA  
SA | 60S ribosomal protein L28  
SB | 40S ribosomal protein S3a  
SC | 40S ribosomal protein S2  
SD | 40S ribosomal protein S3  
SE | 40S ribosomal protein S4, X isoform  
SF | 40S ribosomal protein S5  
SG | 40S ribosomal protein S6  
SH | 40S ribosomal protein S7  
SI | 40S ribosomal protein S8  
SJ | 40S ribosomal protein S9  
SK | 40S ribosomal protein S10  
SL | 40S ribosomal protein S11  
SM | 40S ribosomal protein S12  
SN | 40S ribosomal protein S13  
SO | 40S ribosomal protein S14  
SP | 40S ribosomal protein S15  
SQ | 40S ribosomal protein S16  
SR | 40S ribosomal protein S17  
SS | 40S ribosomal protein S18  
ST | 40S ribosomal protein S19  
SU | 40S ribosomal protein S20  
SV | 40S ribosomal protein S21  
SW | 40S ribosomal protein S15a  
SX | 40S ribosomal protein S23  
SY | 40S ribosomal protein S24  
SZ | 40S ribosomal protein S25  
Sa | 40S ribosomal protein S26  
Sb | 40S ribosomal protein S27  
Sc | 40S ribosomal protein S28  
Sd | 40S ribosomal protein S29  
Se | 40S ribosomal protein S30  
Sf | Ubiquitin-40S ribosomal protein S27a  
Sg | Receptor of activated protein C kinase 1  
v | tRNA  
w | mRNA  
  

> open /Users/julianaabramovich/Downloads/cryosparc_P2_J53_008_volume_map.mrc

Opened cryosparc_P2_J53_008_volume_map.mrc as #2, grid size 640,640,640, pixel
0.83, shown at level 0.228, step 4, values float32  

> volume flip #2 axis y

Opened cryosparc_P2_J53_008_volume_map.mrc y flip as #3, grid size
640,640,640, pixel 0.83, shown at step 1, values float32  

> hide #!1 models

> volume #3 style mesh

> volume #3 color #b0ebff

> volume #3 style surface

> show #!1 models

> hide #!1 models

> show #!1 models

> ui mousemode right select

> select clear

> select add #1

393261 atoms, 409847 bonds, 138 pseudobonds, 18279 residues, 4 models selected  

> select subtract #1

Nothing selected  

> select add #1

393261 atoms, 409847 bonds, 138 pseudobonds, 18279 residues, 4 models selected  

> select clear

> select add #1

393261 atoms, 409847 bonds, 138 pseudobonds, 18279 residues, 4 models selected  

> ui mousemode right "translate selected models"

> view matrix models #1,1,0,0,14.541,0,1,0,-277.99,0,0,1,-203.02


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 INTEL-18.7.4
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645
OpenGL vendor: Intel Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,4
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 1.4 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 8 GB
      System Firmware Version: 1731.120.10.0.0 (iBridge: 19.16.15071.0.0,0)
      OS Loader Version: 540.120.3~6

Software:

    System Software Overview:

      System Version: macOS 12.4 (21F79)
      Kernel Version: Darwin 21.5.0
      Time since boot: 1 day 2:19

Graphics/Displays:

    Intel Iris Plus Graphics 645:

      Chipset Model: Intel Iris Plus Graphics 645
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea6
      Revision ID: 0x0001
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        Sceptre F27:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 75.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: 1
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Connection Type: DVI or HDMI
          Adapter Firmware Version: 5.05


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.0
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

Change History (2)

comment:1 by pett, 3 years ago

Component: UnassignedGraphics
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionGraphics hardware encountered an error and was reset

comment:2 by Tom Goddard, 3 years ago

Resolution: nonchimerax
Status: assignedclosed
Summary: Graphics hardware encountered an error and was resetGraphics crash, macOS 12.4, Intel Iris Plus Graphics 645

Apple Intel graphics driver crash

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