![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#8063 closed defect (can't reproduce)
Crash running AlphaFold prediction
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Prediction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [63232]
Path: /private/var/folders/*/ChimeraX-1.4.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: ???
Code Type: X86-64 (Native)
Parent Process: ??? [1]
User ID: 502
Date/Time: 2022-11-21 14:57:15.680 +0000
OS Version: Mac OS X 10.15.7 (19H2026)
Report Version: 12
Anonymous UUID: 7C605A64-A4A1-31BA-DF4C-0050F09FDCA8
Sleep/Wake UUID: AE111F79-446C-4F68-8FDC-5FD3679FB335
Time Awake Since Boot: 480000 seconds
Time Since Wake: 160 seconds
System Integrity Protection: enabled
Crashed Thread: 0
Exception Type: EXC_BAD_ACCESS (SIGILL)
Exception Codes: KERN_MEMORY_ERROR at 0x0000000102f60f30
Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Illegal instruction: 4
Termination Reason: Namespace SIGNAL, Code 0x4
Terminating Process: ChimeraX [63232]
VM Regions Near 0x102f60f30:
MALLOC metadata 0000000102d8c000-0000000102d8d000 [ 4K] rw-/rwx SM=ZER
--> mapped file 0000000102d8d000-0000000102ff6000 [ 2468K] r-x/rwx SM=COW Object_id=4e5594b3
mapped file 0000000102ff6000-0000000103030000 [ 232K] rw-/rwx SM=COW Object_id=467b8cb3
Thread 0 Crashed:
0 ??? 0x0000000102f60f30 0 + 4344647472
1 ChimeraX 000000000000000000 0 + 0
2 ChimeraX 000000000000000000 0 + 0
3 ChimeraX 000000000000000000 0 + 0
4 ??? 0x0000000000000005 0 + 5
5 ??? 0x0005000000000000 0 + 1407374883553280
6 ??? 0x0000001080010000 0 + 70867025920
7 ChimeraX 000000000000000000 0 + 0
8 ChimeraX 000000000000000000 0 + 0
9 ChimeraX 000000000000000000 0 + 0
10 ChimeraX 000000000000000000 0 + 0
11 ChimeraX 000000000000000000 0 + 0
12 ChimeraX 000000000000000000 0 + 0
13 ChimeraX 000000000000000000 0 + 0
14 ChimeraX 000000000000000000 0 + 0
15 ChimeraX 000000000000000000 0 + 0
16 ChimeraX 000000000000000000 0 + 0
17 ChimeraX 000000000000000000 0 + 0
18 ChimeraX 000000000000000000 0 + 0
19 ChimeraX 000000000000000000 0 + 0
20 ChimeraX 000000000000000000 0 + 0
21 ChimeraX 000000000000000000 0 + 0
22 ChimeraX 000000000000000000 0 + 0
23 ChimeraX 000000000000000000 0 + 0
24 ChimeraX 000000000000000000 0 + 0
25 ChimeraX 000000000000000000 0 + 0
26 ChimeraX 000000000000000000 0 + 0
27 ChimeraX 000000000000000000 0 + 0
28 ??? 0x72636564202d2d20 0 + 8242543223729106208
29 ??? 0x75420a0a2e73656c 0 + 8449326889745737068
30 ??? 0x1337bfcdba4b7b49 0 + 1384786300754426697
31 ??? 0x00007fc146fba540 0 + 140468096312640
32 ??? 0xff0604ffffff19ff 0 + 18376380827089967615
33 ChimeraX 000000000000000000 0 + 0
34 ??? 0x292874726f732e70 0 + 2965748389468384880
35 ChimeraX 000000000000000000 0 + 0
36 ChimeraX 000000000000000000 0 + 0
37 ??? 0x6cb7659b009d8acb 0 + 7833841793238928075
38 ??? 0x5498df5c38791d23 0 + 6095867682823413027
39 ??? 0xb61bdbf1c7c2af77 0 + 13122323770759098231
40 ??? 0x1ffec4a5717471cd 0 + 2305496274112377293
41 ChimeraX 000000000000000000 0 + 0
42 ??? 0x24f07bf42cb91677 0 + 2661763668428527223
43 ??? 0xea8fbc66177e74cc 0 + 16901935073211610316
44 ??? 0xd04f968d0d3a7121 0 + 15010381615605641505
45 ChimeraX 000000000000000000 0 + 0
46 ??? 0xfb2eeb28a94911cb 0 + 18099662512319959499
47 ??? 0x00007fc1489868b0 0 + 140468123363504
48 ??? 0x00007fc148981770 0 + 140468123342704
49 ChimeraX 000000000000000000 0 + 0
50 ??? 0xf1c0e9de7973ebaa 0 + 17420180500398730154
51 ChimeraX 000000000000000000 0 + 0
52 ??? 0x00007fc14898ed50 0 + 140468123397456
53 ??? 0x65737478652e736f 0 + 7310314680594887535
54 ??? 0x6573203a44494753 0 + 7310222054778292051
55 ??? 0x00007fc146f6cf30 0 + 140468095995696
56 ??? 0x00c70105ffff003e 0 + 56014645646786622
57 ??? 0x00007fc14897d1b0 0 + 140468123324848
58 ??? 0xcb3f3c32f52bb65a 0 + 14645490702791456346
59 ??? 0x00007fc14897b930 0 + 140468123318576
60 ??? 0x00007fc14897fa30 0 + 140468123335216
61 ??? 0x8f303a3a7e171fde 0 + 10317810769203765214
62 ChimeraX 000000000000000000 0 + 0
63 ??? 0x00007fc148a069b0 0 + 140468123888048
64 ChimeraX 000000000000000000 0 + 0
65 ??? 0x6f662073656c7069 0 + 8027139065829421161
66 ??? 0x64202c706f742072 0 + 7214815464465375346
67 ??? 0x8f875f308fd75e69 0 + 10342339731455958633
68 ??? 0x0031ffffffffffff 0 + 14073748835532799
69 ??? 0x00007fc146f50150 0 + 140468095877456
70 ChimeraX 000000000000000000 0 + 0
71 ChimeraX 000000000000000000 0 + 0
72 ??? 0x2d202020200a0a29 0 + 3251634253310069289
73 ??? 0x78593343924415c1 0 + 8672018922788361665
74 ChimeraX 000000000000000000 0 + 0
75 ??? 0x00007fc148ae0fb0 0 + 140468124782512
76 ??? 0x00007fc148b05d70 0 + 140468124933488
77 ChimeraX 000000000000000000 0 + 0
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80 ChimeraX 000000000000000000 0 + 0
81 ??? 0x6bccfdef544d6f2a 0 + 7767862661660634922
82 ??? 0x5f910cd9e62b437e 0 + 6886299435235230590
83 ChimeraX 000000000000000000 0 + 0
84 ??? 0x2c5b656c62617265 0 + 3196259876730925669
85 ChimeraX 000000000000000000 0 + 0
86 ??? 0xd7f3006a1b3f5e4d 0 + 15560781593218866765
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89 ??? 0x5483046ec54b2152 0 + 6089715994937991506
90 ChimeraX 000000000000000000 0 + 0
91 ChimeraX 000000000000000000 0 + 0
92 ??? 0x00007fc148a74bb0 0 + 140468124339120
93 ??? 0xc57b43af37cad526 0 + 14230041867441591590
94 ??? 0x0000047200530183 0 + 4887678222723
95 ??? 0x0000397200000038 0 + 63161789055032
96 ??? 0x00007fc148a081f0 0 + 140468123894256
97 ??? 0x65206e6120656220 0 + 7286945560519860768
98 ??? 0x20656874206e6f20 0 + 2334386829831073568
99 ??? 0x616974696e692065 0 + 7019269490406400101
100 ??? 0x6168742820656c62 0 + 7018987734947949666
101 ??? 0x6920747562202c65 0 + 7575182620743445605
102 ??? 0x00007fc148a7e0b0 0 + 140468124377264
103 ??? 0x4fd9d99639c9e10a 0 + 5753869238180372746
104 ??? 0x9494e22020202020 0 + 10706430841772318752
105 ??? 0x030f16051000ffff 0 + 220419117763592191
106 ??? 0x0000000000000018 0 + 24
107 ChimeraX 000000000000000000 0 + 0
108 ??? 0x00007fc148ce7270 0 + 140468126904944
109 ??? 0x87feb8ea598c09db 0 + 9799473155868985819
110 ??? 0x00007fc146f1b530 0 + 140468095661360
111 ??? 0x0000000102ffc950 0 + 4345284944
112 ??? 0x00007fc148bba770 0 + 140468125673328
113 ??? 0x000c730000004300 0 + 3504143557739264
114 ??? 0x0000000103226d2e 0 + 4347555118
115 ChimeraX 000000000000000000 0 + 0
116 ??? 0x037c007c06740574 0 + 251076211910116724
117 ??? 0x202c6060746e695f 0 + 2318333875575482719
118 ??? 0x00007fc148dee470 0 + 140468127982704
119 ??? 0x00007fc146f1e6b0 0 + 140468095674032
120 ??? 0x0000000972000000 0 + 40567308288
121 ??? 0x00007fc148d00470 0 + 140468127007856
122 ??? 0x2d2d2d202020200a 0 + 3255307721659916298
123 ??? 0x202020202020676e 0 + 2314885530818471790
124 ??? 0x00007fc146f34830 0 + 140468095764528
125 ??? 0x6164206568742073 0 + 7017769739266302067
126 ChimeraX 000000000000000000 0 + 0
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128 ChimeraX 000000000000000000 0 + 0
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131 ChimeraX 000000000000000000 0 + 0
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133 ChimeraX 000000000000000000 0 + 0
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140 ChimeraX 000000000000000000 0 + 0
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142 ChimeraX 000000000000000000 0 + 0
143 ChimeraX 000000000000000000 0 + 0
144 ChimeraX 000000000000000000 0 + 0
145 ??? 0xad9839cc3ad23e6a 0 + 12508811514344521322
146 ChimeraX 000000000000000000 0 + 0
147 ChimeraX 000000000000000000 0 + 0
148 ??? 0x50b3cf66abb03f69 0 + 5815219583739510633
149 ChimeraX 000000000000000000 0 + 0
150 ChimeraX 000000000000000000 0 + 0
151 ChimeraX 000000000000000000 0 + 0
152 ??? 0xe6ba4f3387fae8bd 0 + 16625688057134901437
153 ??? 0xd000c989ab58e111 0 + 14988201153011441937
154 ChimeraX 000000000000000000 0 + 0
155 ChimeraX 000000000000000000 0 + 0
156 ??? 0xcbff79618b104a11 0 + 14699601168612477457
157 ChimeraX 000000000000000000 0 + 0
158 ChimeraX 000000000000000000 0 + 0
159 ChimeraX 000000000000000000 0 + 0
160 ChimeraX 000000000000000000 0 + 0
161 ChimeraX 000000000000000000 0 + 0
162 ChimeraX 000000000000000000 0 + 0
163 ChimeraX 000000000000000000 0 + 0
164 ChimeraX 000000000000000000 0 + 0
165 ChimeraX 000000000000000000 0 + 0
166 ChimeraX 000000000000000000 0 + 0
167 ??? 0x399bf38b0f3455b8 0 + 4151179260133135800
168 ChimeraX 000000000000000000 0 + 0
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170 ChimeraX 000000000000000000 0 + 0
171 ChimeraX 000000000000000000 0 + 0
172 ChimeraX 000000000000000000 0 + 0
173 ChimeraX 000000000000000000 0 + 0
174 ??? 0x00007fc146f64030 0 + 140468095959088
175 ChimeraX 000000000000000000 0 + 0
176 ??? 0x00007fc148bb9da0 0 + 140468125670816
177 ??? 0x027c257c30641674 0 + 179059300506015348
178 ??? 0x0164347c06a0447c 0 + 100262799000749180
179 ??? 0x01644c730f906c6a 0 + 100289148775066730
180 ??? 0x6c75616665642065 0 + 7815259820786983013
181 ??? 0x206649202020200a 0 + 2334633859164938250
182 ??? 0x00007fc148ba0390 0 + 140468125565840
183 ??? 0x00007fc146f1e6b0 0 + 140468095674032
184 ??? 0x00007fc14703cec0 0 + 140468096847552
185 ??? 0x00007fc14703d2f0 0 + 140468096848624
186 ??? 0x0000000000000093 0 + 147
187 ??? 0x2d302065676e6172 0 + 3256138150487941490
188 ??? 0x00007fc146fc6030 0 + 140468096360496
189 ??? 0x200a0a3a29287269 0 + 2308669003895698025
190 ??? 0x202e676e69646e65 0 + 2318904582054637157
191 ??? 0x206e692072656765 0 + 2336920844730984293
192 ??? 0x62616c6961766120 0 + 7089066488320385312
193 ??? 0x00007fc148de5030 0 + 140468127944752
194 ??? 0x202020202020204e 0 + 2314885530818453582
195 ??? 0x746977202c726564 0 + 8388366761022612836
196 ??? 0x65646e69206e4120 0 + 7306085893296505120
197 ??? 0x2d2d2d2d2d2d2d2d 0 + 3255307777713450285
198 ??? 0x00007fc148ddd8f0 0 + 140468127914224
199 ??? 0x20200a656b696c5f 0 + 2314861639178480735
200 ??? 0x2f09a0ccc78cbb40 0 + 3389416995954670400
201 ??? 0x00007fc146f21f30 0 + 140468095688496
202 ??? 0x00007fc148efef30 0 + 140468129099568
203 ChimeraX 000000000000000000 0 + 0
204 ??? 0x001c0005003c0088 0 + 7881320826667144
205 ??? 0x8ddae92810353a25 0 + 10221738662550649381
206 ??? 0x00007fc148e71400 0 + 140468128519168
207 ChimeraX 000000000000000000 0 + 0
208 ??? 0x00007fc148d00930 0 + 140468127009072
209 ??? 0x616e20746e656d75 0 + 7020584553557618037
210 ??? 0x6f70206f730a2c64 0 + 8029953798645099620
211 ??? 0x6568742068746977 0 + 7307218077948864887
212 ??? 0x540a0a3a736e6f69 0 + 6055663895114051433
213 ??? 0x2d2d2d2d2d2d2d2d 0 + 3255307777713450285
214 ??? 0x79703a202b0a2b2d 0 + 8750557985816324909
215 ??? 0x45726573552e7372 0 + 5004173681986794354
216 ??? 0x6c62616c6c616320 0 + 7809911822116545312
217 ??? 0x00007fc146d412d0 0 + 140468093719248
218 ??? 0x00007fc148e39710 0 + 140468128290576
219 ??? 0x6920202020202020 0 + 7575089895587192864
220 ??? 0x0043000000050000 0 + 18858823439941632
221 ??? 0x6e756620726f7463 0 + 7959380205992113251
222 ??? 0x0200000000067300 0 + 144115188076278528
223 ??? 0x00007fc148e615e0 0 + 140468128454112
224 ??? 0x003a000fffff0023 0 + 16325617368629283
225 ??? 0x00007fc148dd8630 0 + 140468127893040
226 ??? 0xc9df9188e9045302 0 + 14546505338640945922
227 ChimeraX 000000000000000000 0 + 0
228 ??? 0x7575811e8481182b 0 + 8463813042784770091
229 ChimeraX 000000000000000000 0 + 0
230 ChimeraX 000000000000000000 0 + 0
231 ??? 0xbfb7c2504af15e78 0 + 13814724032092790392
232 ??? 0x00007fc146f850b0 0 + 140468096094384
233 ??? 0xc31f251b29b4f427 0 + 14059997360268047399
234 ??? 0x00007fc148ee7370 0 + 140468129002352
235 ??? 0x2172000000207200 0 + 2409988750598763008
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238 ChimeraX 000000000000000000 0 + 0
239 ??? 0x4cb57574c50295ac 0 + 5527453262049088940
240 ??? 0x00007fc148eefdf0 0 + 140468129037808
241 ChimeraX 000000000000000000 0 + 0
242 ??? 0x0000004000000005 0 + 274877906949
243 ??? 0x536b63617453147a 0 + 6011007397870638202
244 ??? 0x00007fc147050b90 0 + 140468096928656
245 ??? 0x61746e797320726f 0 + 7022359186879050351
246 ??? 0x2ead78f114c7f21f 0 + 3363477473546727967
247 ??? 0x696c6060202a2020 0 + 7596552637439942688
248 ??? 0x202c5342494c5f53 0 + 2318319452351651667
249 ChimeraX 000000000000000000 0 + 0
250 ChimeraX 000000000000000000 0 + 0
251 ??? 0x20202020200a7374 0 + 2314885530817033076
252 ??? 0x2e322d20202c3530 0 + 3328772690582189360
253 ??? 0x2d2d2d2d2d202020 0 + 3255307777712594976
254 ??? 0x0a295d5d36202c35 0 + 732219069345836085
255 ??? 0x6e6f697469646e6f 0 + 7957695015292268143
256 ??? 0x6e203d2079202c78 0 + 7935409753107213432
257 ChimeraX 000000000000000000 0 + 0
258 ChimeraX 000000000000000000 0 + 0
259 ChimeraX 000000000000000000 0 + 0
260 ??? 0x6e65766e6f63206e 0 + 7954894533507096686
261 ??? 0x615f65737261700a 0 + 7016438290981154826
262 ??? 0x2d2d2d202020200a 0 + 3255307721659916298
263 ??? 0x29322c3428202c29 0 + 2968483706913696809
264 ??? 0x20736e61656d2027 0 + 2338333996127952935
265 ??? 0x317527202c303531 0 + 3563797699267409201
266 ??? 0x20646e612065636e 0 + 2334111870319158126
267 ??? 0x6c75736572206568 0 + 7815279607914980712
268 ??? 0x20646e6120796172 0 + 2334111870320468338
269 ??? 0x70206d7553203a20 0 + 8079578082175892000
270 ??? 0x746f64202020200a 0 + 8390034719955230730
271 ??? 0x0000000103014640 0 + 4345382464
272 ??? 0x202020200a0a2e78 0 + 2314885530447916664
273 ??? 0x200a74616c662066 0 + 2308785720760082534
274 ??? 0x65646e695f69746c 0 + 7306085894353155180
275 ??? 0x20200a2d2d2d2d2d 0 + 2314861397616176429
276 ??? 0x006400bc00e50021 0 + 28148305139925025
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278 ??? 0x00007fc148e750f0 0 + 140468128534768
279 ??? 0x733d959c39ce34ba 0 + 8303957786158314682
280 ??? 0x00007fc146f50db0 0 + 140468095880624
281 ??? 0x00007fc148e774b0 0 + 140468128543920
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285 ChimeraX 000000000000000000 0 + 0
286 ??? 0x6369676f6c202020 0 + 7163370410562560032
287 ??? 0x7972616e69622061 0 + 8751164152776630369
288 ??? 0x2020202020200a65 0 + 2314885530818447973
289 ChimeraX 000000000000000000 0 + 0
290 ??? 0x732e706e203e3e3e 0 + 8299694781580066366
291 ??? 0x273d6b73616d6b65 0 + 2827534284358511461
292 ??? 0x20200a2d2d2d2d2d 0 + 2314861397616176429
293 ??? 0x722060606c6c6f72 0 + 8223678886830698354
294 ??? 0x74616369646e6920 0 + 8386093285448247584
295 ??? 0x6e756f635f796164 0 + 7959390389041455460
296 ChimeraX 000000000000000000 0 + 0
297 ??? 0x6565772020202020 0 + 7306376950340132896
298 ??? 0x20200a3036322020 0 + 2314861410652397600
299 ??? 0x53202020200a0a29 0 + 5989822826751330857
300 ??? 0x0000000000000008 0 + 8
301 ??? 0x202020200a6e6f69 0 + 2314885530454486889
302 ??? 0x7c07740183066a02 0 + 8937239535382063618
303 ChimeraX 000000000000000000 0 + 0
304 ??? 0x00007fc148b4f0f0 0 + 140468125233392
305 ??? 0x00ff00450aff0001 0 + 71776415598444545
306 ??? 0x6570795420202020 0 + 7309475597445505056
307 ??? 0x617620746c756166 0 + 7022836353338794342
308 ??? 0x005500ea00e10060 0 + 23926378057498720
309 ??? 0x689615a72952c7d0 0 + 7536234834148116432
310 ??? 0x00007fc146f21990 0 + 140468095687056
311 ??? 0x00007fc148fafaf0 0 + 140468129823472
312 ??? 0xc8f569fe9fd05721 0 + 14480596719203538721
313 ChimeraX 000000000000000000 0 + 0
314 ChimeraX 000000000000000000 0 + 0
315 ??? 0xffff007bffffffff 0 + 18446463131308785663
316 ??? 0x00007fc148a992f0 0 + 140468124488432
317 ??? 0xb7d5fb2d1f0a0a1d 0 + 13246770050193033757
318 ??? 0x00007fc148fa0a40 0 + 140468129761856
319 ??? 0x00007fc148ce67b0 0 + 140468126902192
320 ChimeraX 000000000000000000 0 + 0
321 ChimeraX 000000000000000000 0 + 0
322 ??? 0x612e706e60602020 0 + 7002658089973325856
323 ??? 0x0a0a3a7265687465 0 + 723454953148413029
324 ??? 0x1991cba72b3dc274 0 + 1842477641416688244
325 ChimeraX 000000000000000000 0 + 0
326 ??? 0x00007fc149812bb0 0 + 140468138617776
327 ChimeraX 000000000000000000 0 + 0
328 ??? 0xffffffffffff004d 0 + 18446744073709486157
329 ??? 0x00007fc149815980 0 + 140468138629504
330 ChimeraX 000000000000000000 0 + 0
331 ChimeraX 000000000000000000 0 + 0
332 ??? 0xffff000affffffff 0 + 18446462645977481215
333 ??? 0x635233963ea110e8 0 + 7156839478233993448
334 ChimeraX 000000000000000000 0 + 0
335 ChimeraX 000000000000000000 0 + 0
336 ??? 0x017fffffffffffff 0 + 108086391056891903
337 ??? 0x00007fc146f210f0 0 + 140468095684848
338 ??? 0x0000000103015300 0 + 4345385728
339 ??? 0x00007fc148a1df40 0 + 140468123983680
340 ??? 0x00007fc148a27cf0 0 + 140468124024048
341 ??? 0x00007fc146e2dc10 0 + 140468094688272
342 ??? 0x00007fc148e55b30 0 + 140468128406320
343 ??? 0x00007fc1498b5030 0 + 140468139282480
344 ??? 0x0000000107e4e390 0 + 4427408272
345 ??? 0x00007fc14a1732c0 0 + 140468148449984
346 ChimeraX 000000000000000000 0 + 0
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349 ChimeraX 000000000000000000 0 + 0
350 ??? 0x00007fc14981ea60 0 + 140468138666592
351 ChimeraX 000000000000000000 0 + 0
352 ??? 0x00007fc14980b170 0 + 140468138586480
353 ChimeraX 000000000000000000 0 + 0
354 ??? 0x7261646e203a2074 0 + 8241979217214578804
355 ??? 0x202c292e2e2e202c 0 + 2318273186508972076
356 ??? 0x7320656c7069746c 0 + 8295742030033286252
357 ??? 0x4d20666f20676e69 0 + 5557554567646244457
358 ??? 0x68732e612a28203d 0 + 7526410397120208957
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360 ??? 0x006a005d006f0015 0 + 29836746970562581
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362 ??? 0x692b303b44d85fa9 0 + 7578203829097226153
363 ??? 0x00007fc148fac340 0 + 140468129809216
364 ??? 0x00007fc148fe1c70 0 + 140468130028656
365 ChimeraX 000000000000000000 0 + 0
366 ChimeraX 000000000000000000 0 + 0
367 ??? 0x0000000103014640 0 + 4345382464
368 ??? 0x657320656874206e 0 + 7310222240068673646
369 ??? 0x2c7a747265482720 0 + 3205002119501850400
370 ChimeraX 000000000000000000 0 + 0
371 ??? 0x746c756d206d6f72 0 + 8389209317440319346
372 ??? 0x0a0a65736c614620 0 + 723502236560344608
373 ??? 0x20746c7573657220 0 + 2338613358215131680
374 ChimeraX 000000000000000000 0 + 0
375 ??? 0x61202c73756f7567 0 + 6998642695336850791
376 ??? 0x322c312c322c332c 0 + 3615318666761745196
377 ??? 0x203a207475707475 0 + 2322204242421511285
378 ??? 0x67696577203d2b20 0 + 7451598620777589536
379 ??? 0x732720656c757220 0 + 8297636458436850208
380 ??? 0x746167656e206120 0 + 8386097666477547808
381 ??? 0x6c66206120737472 0 + 7810966205249057906
382 ChimeraX 000000000000000000 0 + 0
383 ChimeraX 000000000000000000 0 + 0
384 ChimeraX 000000000000000000 0 + 0
385 ??? 0x74206f7420676e69 0 + 8367810652204920425
386 ??? 0x200a64656b636170 0 + 2308768145736950128
387 ??? 0x75202c7961727261 0 + 8439794601529864801
388 ChimeraX 000000000000000000 0 + 0
389 ??? 0x6146202020200a29 0 + 7009325192398768681
390 ??? 0x6428796164737562 0 + 7217151862065296738
391 ??? 0x6e72757465522020 0 + 7958552634293624864
392 ??? 0x20200a6f7420676e 0 + 2314861682274363246
393 ??? 0x656d656c652d6e65 0 + 7308609286520532581
394 ??? 0x2e73796164206469 0 + 3347152407265043561
395 ChimeraX 000000000000000000 0 + 0
396 ??? 0x736e6f6974616976 0 + 8317708060514675062
397 ??? 0x3227202c27313130 0 + 3613892599996297520
398 ??? 0x697465746164273d 0 + 7598810021805434685
399 ??? 0xd675704db10efa80 0 + 15453381175377066624
400 ChimeraX 000000000000000000 0 + 0
401 ??? 0x6375727473206568 0 + 7166760226503288168
402 ChimeraX 000000000000000000 0 + 0
403 ??? 0x207c2020207c2020 0 + 2340781228681863200
404 ??? 0x3a206e69746c6975 0 + 4188469052658444661
405 ??? 0x0051007e00630050 0 + 22800014285930576
406 ??? 0x81d790d56fc7e0dd 0 + 9356105997263298781
407 ??? 0x706e5b2865707974 0 + 8101513008744790388
408 ??? 0x00007fc148fd37f0 0 + 140468129970160
409 ??? 0xffffffff0033ffff 0 + 18446744069417992191
410 ??? 0xcbd7ccfaeb2dd696 0 + 14688434087751702166
411 ??? 0x00007fc148f5d140 0 + 140468129485120
412 ??? 0x00007fc148ed6af0 0 + 140468128934640
413 ??? 0x3524ea157f4c9781 0 + 3829442961222702977
414 ChimeraX 000000000000000000 0 + 0
415 ChimeraX 000000000000000000 0 + 0
416 ??? 0x00007fc1498434c0 0 + 140468138816704
417 ??? 0x00007fc1498419b0 0 + 140468138809776
418 ChimeraX 000000000000000000 0 + 0
419 ChimeraX 000000000000000000 0 + 0
420 ChimeraX 000000000000000000 0 + 0
421 ChimeraX 000000000000000000 0 + 0
422 ??? 0x000000010360bcc0 0 + 4351638720
423 ??? 0x00007fc14983d730 0 + 140468138792752
424 ??? 0x00007fc148a08230 0 + 140468123894320
425 ??? 0x07d78b7a4598c0d1 0 + 565073635528196305
426 ??? 0x000000010360c188 0 + 4351639944
427 ??? 0x877206294e000000 0 + 9759870116937334784
428 ??? 0x20726f6620737469 0 + 2338053640980493417
429 ??? 0x00007fc148f3ebf0 0 + 140468129360880
430 ??? 0x5f5f2e78656c706d 0 + 6872262651023224941
431 ChimeraX 000000000000000000 0 + 0
432 ChimeraX 000000000000000000 0 + 0
433 ChimeraX 000000000000000000 0 + 0
434 ??? 0x0051ffffffffffff 0 + 23080948090273791
435 ??? 0x00007fc14983adb0 0 + 140468138782128
436 ??? 0x00007fc14983d330 0 + 140468138791728
437 ChimeraX 000000000000000000 0 + 0
438 ??? 0xb1f9580b8ff630d2 0 + 12824378220597358802
439 ??? 0x7261646e203a2074 0 + 8241979217214578804
440 ??? 0x746c757365722065 0 + 8389209344368058469
441 ??? 0x6172726120202020 0 + 7021800530500395040
442 ??? 0x7661206f7420656c 0 + 8530134832278168940
443 ??? 0x79616c2079726f6d 0 + 8746390838062509933
444 ??? 0x657a2e706e203e3e 0 + 7312208005408243262
445 ??? 0x56202020200a6567 0 + 6205995608865138023
446 ??? 0x7474657320796172 0 + 8391443550838546802
447 ??? 0x60616020666f2065 0 + 6944937792655794277
448 ??? 0x656874206e692073 0 + 7307218078048788595
449 ??? 0x7275746572207369 0 + 8247626271654179689
450 ??? 0x415254524f462072 0 + 4706917273049636978
451 ??? 0x2d31206f77742066 0 + 3256419668683137126
452 ??? 0x29356531203d206e 0 + 2969390790989389934
453 ??? 0x6e6f632065726120 0 + 7957688057379053856
454 ??? 0x00007fc146f6ccf0 0 + 140468095995120
455 ??? 0x65687420666f2073 0 + 7307218077914964083
456 ??? 0x2972657473616628 0 + 2986561053726434856
457 ChimeraX 000000000000000000 0 + 0
458 ??? 0x6120656b614d2020 0 + 6998705332802101280
459 ChimeraX 000000000000000000 0 + 0
460 ??? 0x200a796172726164 0 + 2308791218419687780
461 ??? 0x687420676e697475 0 + 7526676505849066613
462 ??? 0x61275b5b20202020 0 + 7000664592709853216
463 ??? 0x6f20656c70757420 0 + 8007511653882360864
464 ??? 0x7961727261202020 0 + 8746397786911547424
465 ??? 0x202e6e6f69746973 0 + 2318912282932046195
466 ??? 0x61646e203a207365 0 + 7017855204043289445
467 ??? 0x656d69642033206f 0 + 7308613649050050671
468 ??? 0x5d345b2020202020 0 + 6716093137852309536
469 ??? 0x657070617773203d 0 + 7309465759140487229
470 ??? 0x6260286574756c6f 0 + 7088710229691821167
471 ??? 0x20200a0a2e65636e 0 + 2314861247312782190
472 ??? 0x606160206e692020 0 + 6944937792789618720
473 ??? 0x2e706e203e3e3e20 0 + 3346295607898553888
474 ??? 0x202020200a0a6575 0 + 2314885530447930741
475 ??? 0x207265626d756e20 0 + 2338042629976321568
476 ??? 0x202020202020200a 0 + 2314885530818453514
477 ??? 0x00007fc1498a1830 0 + 140468139202608
478 ??? 0x7865646e69207473 0 + 8675450682572043379
479 ??? 0x6564206568742068 0 + 7306000115418013800
480 ChimeraX 000000000000000000 0 + 0
481 ??? 0x6572542020202020 0 + 7309997642130399264
482 ??? 0x6469766964277b20 0 + 7235444471371365152
483 ??? 0x76206f777420676e 0 + 8511925854570309486
484 ??? 0x61727261203a2073 0 + 7021800530502099059
485 ??? 0x20646e61202c6576 0 + 2334111870315423094
486 ??? 0x6120746375727473 0 + 6998721791454770291
487 ??? 0x756f207372656765 0 + 8462017905065027429
488 ??? 0x622065756c617620 0 + 7070762969975584288
489 ??? 0x202c31202c34202c 0 + 2318281922439290924
490 ??? 0x61203a2076202020 0 + 6998657732028932128
491 ??? 0x7265666552202020 0 + 8243107278327128096
Thread 1:
0 ??? 0x00007fff7177a872 0 + 140735097055346
1 ??? 0x0000000103a6d49f 0 + 4356232351
2 ??? 0x00007fff7183f109 0 + 140735097860361
3 ??? 0x00007fff7183ab8b 0 + 140735097842571
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000102f60f30 rbx: 0x00007fc147000630 rcx: 0x00007fc1470005c8 rdx: 0x00007fc147000630
rdi: 0x000000000000000a rsi: 0x00007fc1470005c8 rbp: 0x00007fc1470001a0 rsp: 0x00007fc147000198
r8: 0x00007fc147000630 r9: 0x7edb5cea5a81b93d r10: 0x0000000108a69e6c r11: 0x0000000000000206
r12: 0x7edb5cea5a81b93d r13: 0x00007fc146e07550 r14: 0x00007fc14a3ddc00 r15: 0x0000000000000027
rip: 0x0000000102f60f30 rfl: 0x0000000000010206 cr2: 0x0000000102f60f30
Logical CPU: 1
Error Code: 0x00000014 (no mapping for user instruction read)
Trap Number: 14
Binary Images:
0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.4.app/Contents/MacOS/ChimeraX
0x10899e000 - 0x108a30267 dyld (750.7) /usr/lib/dyld
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 23
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 310069
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=812K resident=0K(0%) swapped_out_or_unallocated=812K(100%)
Writable regions: Total=129.3M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=129.3M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Kernel Alloc Once 8K 1
MALLOC 55.9M 97
MALLOC guard page 16K 3
MALLOC_LARGE (reserved) 128K 1 reserved VM address space (unallocated)
STACK GUARD 4K 1
Stack 8712K 2
Stack Guard 56.0M 1
VM_ALLOCATE 64.0M 2
__DATA 216K 2
__DATA_CONST 20K 1
__LINKEDIT 224K 1
__TEXT 588K 1
dylib 328K 4
dylib (reserved) 168K 25 reserved VM address space (unallocated)
mapped file 82.6M 138
shared memory 12K 3
=========== ======= =======
TOTAL 268.7M 283
TOTAL, minus reserved VM space 268.5M 283
===== Log before crash start =====
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show AlphaFold
> alphafold predict
> MTNPSIFPSLWSESLPSTEEGRQDESARSPKYVHEVNVSAAGLSLGKQQREEPGQQPVHVSWKADPELSSNQWNMNGSGVFGASHSSWNDLHDSSSQHSRNSSIWADNHSRTSHSSSAAFHSGSFSGLRTQYADSLDPSSNHTQDSSFSNSLAQLSIGPNTSTYAHQDGLNPLIVGPPSPASSPQSQTAASPSFPASDYYYFPASRNDNQTDASVISKGNHSIPDLMNAHSGSSAGQTWSTGGSSIGKKAAPPGFASHHASNELSAVLESEFADSMSPLPRTSQNSDGTSSNPQAAVTASWSNHDNCPKKDPADNGVNTSQESRRPRQRGKQRANKRKGGGRGGSSGVSSTGGPLTPQTSPLREHKSIQQLYSPRSIKDTSMASPSTLRSTQENARASYTSESLQQLSTVSDETAWGTNMTADLDKHSYHSQHTIDRSSQHLSPTRPSHQPPILPTQPPLIDDASFDDDEVDDLHDFAEEGDDDDAWEAKSFSAPSSSSPRTKKKEWLLRMNRKLQEIPIGQLDPSTVPLSAIMNAWAKTKSAQGASMVELWLKRAQQEYDSGNRQVIPTTKMYTMA
Running AlphaFold prediction
> alphafold search
> MTNPSIFPSLWSESLPSTEEGRQDESARSPKYVHEVNVSAAGLSLGKQQREEPGQQPVHVSWKADPELSSNQWNMNGSGVFGASHSSWNDLHDSSSQHSRNSSIWADNHSRTSHSSSAAFHSGSFSGLRTQYADSLDPSSNHTQDSSFSNSLAQLSIGPNTSTYAHQDGLNPLIVGPPSPASSPQSQTAASPSFPASDYYYFPASRNDNQTDASVISKGNHSIPDLMNAHSGSSAGQTWSTGGSSIGKKAAPPGFASHHASNELSAVLESEFADSMSPLPRTSQNSDGTSSNPQAAVTASWSNHDNCPKKDPADNGVNTSQESRRPRQRGKQRANKRKGGGRGGSSGVSSTGGPLTPQTSPLREHKSIQQLYSPRSIKDTSMASPSTLRSTQENARASYTSESLQQLSTVSDETAWGTNMTADLDKHSYHSQHTIDRSSQHLSPTRPSHQPPILPTQPPLIDDASFDDDEVDDLHDFAEEGDDDDAWEAKSFSAPSSSSPRTKKKEWLLRMNRKLQEIPIGQLDPSTVPLSAIMNAWAKTKSAQGASMVELWLKRAQQEYDSGNRQVIPTTKMYTMA
Webservices job id: SR1HBGM1PBBXIHNP
BLAST search returned no results.
> alphafold search
> MFSFKSFVFAALLSSCEAVVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTLGYGLQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYKGGSGSGDDGANVGLAVGLSIGGLLVLVLLGVVLRRRRSASGSTVEFKDTGSTPI
Webservices job id: I4FCMU2O8SP8KHND
> alphafold predict
> MFSFKSFVFAALLSSCEAVVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTLGYGLQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYKGGSGSGDDGANVGLAVGLSIGGLLVLVLLGVVLRRRRSASGSTVEFKDTGSTPI
Running AlphaFold prediction
> open /Users/administrator/Desktop/AF-A0A090M3D0-F1-model_v3.pdb format pdb
Summary of feedback from opening
/Users/administrator/Desktop/AF-A0A090M3D0-F1-model_v3.pdb
---
warning | Ignored bad PDB record found on line 38
DBREF XXXX A 1 903 UNP A0A090M3D0 A0A090M3D0_OSTTA 1 903
AF-A0A090M3D0-F1-model_v3.pdb title:
Alphafold monomer V2.0 prediction for polyphosphate kinase (A0A090M3D0) [more
info...]
Chain information for AF-A0A090M3D0-F1-model_v3.pdb #1
---
Chain | Description
A | polyphosphate kinase
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.7.28
OpenGL renderer: Intel HD Graphics 4000 OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro10,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 2.5 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 429.0.0.0.0
SMC Version (system): 2.6f59
Sudden Motion Sensor:
State: Enabled
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H2026)
Kernel Version: Darwin 19.6.0
Time since boot: 2:08
Graphics/Displays:
Intel HD Graphics 4000:
Chipset Model: Intel HD Graphics 4000
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0166
Revision ID: 0x0009
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Structure Prediction |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash running AlphaFold prediction |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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