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#8015 closed defect (fixed)

'DICOMBrowserTool' object has no attribute '_see_what_happened'

Reported by:	henriquecsj@…	Owned by:	Zach Pearson
Priority:	normal	Milestone:	1.5
Component:	DICOM	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.22000
ChimeraX Version: 1.5rc202211120143 (2022-11-12 01:43:47 UTC)
Description
(Describe the actions that caused this problem to occur here)Just opening a xyz file.

Log:
UCSF ChimeraX version: 1.5rc202211120143 (2022-11-12)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "C:\Users\henri\OneDrive -
> id.uff.br\Academic\Calculations\UniPAMPA\Triazenes\wB97X-D3\Fukui2\Fukui\no_H\meta\neut\mep.cxs"
> format session

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  
Opened meta-.eldens.cube as #2, grid size 100,100,100, pixel
0.177,0.157,0.141, shown at level -0.129,0.015, step 1, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  
Opened meta-_mep.cube as #3, grid size 100,100,100, pixel 0.177,0.157,0.141,
shown at level -0.333,0.333, step 1, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  
Log from Sun Nov 13 19:52:44 2022UCSF ChimeraX version: 1.5rc202211120143
(2022-11-12)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "C:\Users\henri\OneDrive -
> id.uff.br\Academic\Calculations\UniPAMPA\Triazenes\wB97X-D3\Fukui2\Fukui\no_H\meta\neut\mep.cxs"
> format session

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  
Opened meta-.eldens.cube as #2, grid size 100,100,100, pixel
0.177,0.157,0.141, shown at level -0.129,0.015, step 1, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  
Opened meta-_mep.cube as #3, grid size 100,100,100, pixel 0.177,0.157,0.141,
shown at level -0.333,0.333, step 1, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  
Log from Sun Nov 13 19:15:33 2022UCSF ChimeraX version: 1.5rc202211120143
(2022-11-12)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:\Users\henri\OneDrive -
> id.uff.br\Academic\Calculations\UniPAMPA\Triazenes\wB97X-D3\Fukui2\Fukui\no_H\meta\neut\meta-.xyz"
> format xyz

Opened meta-.xyz as an XYZ file  

> ui tool show "Color Zone"

> ui tool show "Map Coordinates"

> ui tool show "DICOM Browser"

> ui tool show "Map Coordinates"

> ui tool show "Volume Viewer"

> open "C:/Users/henri/OneDrive -
> id.uff.br/Academic/Calculations/UniPAMPA/Triazenes/wB97X-D3/Fukui2/Fukui/no_H/meta/neut/meta-.eldens.cube"

Opened meta-.eldens.cube as #2, grid size 100,100,100, pixel
0.177,0.157,0.141, shown at level -0.129,0.129, step 1, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  

> open "C:/Users/henri/OneDrive -
> id.uff.br/Academic/Calculations/UniPAMPA/Triazenes/wB97X-D3/Fukui2/Fukui/no_H/meta/neut/meta-
> _mep.cube"

Opened meta-_mep.cube as #3, grid size 100,100,100, pixel 0.177,0.157,0.141,
shown at level -0.333,0.333, step 1, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  

> volume #2 level -0.1288 level 0.015

> ui tool show "Color Zone"

> toolshed show

> ui tool show "Color Actions"

> volume #!2 style surface

[Repeated 1 time(s)]

> volume #!2 style mesh

> volume #!2 style surface

> fitmap #1 inMap #2

Fit molecule meta- (#1) to map meta-.eldens.cube (#2) using 31 atoms  
average map value = 14.93, steps = 48  
shifted from previous position = 0.0059  
rotated from previous position = 0.115 degrees  
atoms outside contour = 0, contour level = -0.12878  
  
Position of meta- (#1) relative to meta-.eldens.cube (#2) coordinates:  
Matrix rotation and translation  
0.99999931 0.00116532 0.00014798 0.00573909  
-0.00116556 0.99999800 0.00162451 -0.00800945  
-0.00014609 -0.00162468 0.99999867 0.00054772  
Axis -0.81035688 0.07334108 -0.58132849  
Axis point 0.00000000 -1.65489847 4.67749776  
Rotation angle (degrees) 0.11486579  
Shift along axis -0.00555654  
  

> ui tool show "Surface Color"

> color electrostatic #3.1#3.2 map #2 palette
> -10,#0000ff:0,#00ffff:10,#00ff00:20,#ffff00:30,#ff0000 offset 0

Map values for surface "surface": minimum 0.04413, mean 0.1305, maximum 0.278  

> color electrostatic #2.1#2.2 map #3 palette
> -10,#0000ff:0,#00ffff:10,#00ff00:20,#ffff00:30,#ff0000 offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.15,#0000ff:-0.1,#00ffff:0,#00ff00:0.1,#ffff00:0.15,#ff0000 offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.15,#ff0000:-0.1,#ffff00:0,#00ff00:0.1,#00ffff:0.15,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.2,#ff0000:-0.15,#ffff00:0,#00ff00:0.15,#00ffff:0.2,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.2,#ff0000:-0.11,#ffff00:0,#00ff00:0.11,#00ffff:0.2,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.15,#ff0000:-0.11,#ffff00:0,#00ff00:0.11,#00ffff:0.15,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.15,#ff0000:-0.11,#ffff00:0,#00ff00:0.11,#00ffff:0.12,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.15,#ff0000:-0.11,#ffff00:0,#00ff00:0.11,#00ffff:0.12,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.02,#ff0000:-0.01,#ffff00:0,#00ff00:0.01,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.015,#ff0000:-0.01,#ffff00:0,#00ff00:0.01,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.015,#ff0000:-0.01,#ffff00:0,#00ff00:0.01,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.015,#ff0000:-0.1,#ffff00:0,#00ff00:0.01,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.13,#ff0000:-0.1,#ffff00:0,#00ff00:0.01,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.14,#ff0000:-0.1,#ffff00:0,#00ff00:0.01,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.01,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.1,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.1,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.1,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.1,#00ffff:0.02,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.1,#00ffff:0.2,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.01,#00ffff:0.2,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.09,#00ffff:0.2,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.05,#00ffff:0.2,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.04,#00ffff:0.2,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.04,#00ffff:0.1,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.04,#00ffff:0.1,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.04,#00ffff:0.1,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:-0.1,#ffff00:0,#00ff00:0.04,#00ffff:0.06,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.1,#ff0000:0,#ffffff:0.1,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.1,#0000ff:0,#00ff00:0.1,#ff0000 offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.1,#ff0000:0,#00ff00:0.1,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.15,#ff0000:0,#00ff00:0.1,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> color electrostatic #2.1#2.2 map #3 palette
> -0.16,#ff0000:0,#00ff00:0.1,#0000ff offset 0

Map values for surface "surface": minimum -0.2155, mean -0.07912, maximum
0.1044  

> transparency #2.1-2 50

> set bgColor white

> set bgColor gray

> set bgColor black

> set bgColor white

> volume #!2 style mesh

> volume #!2 style surface

> save "C:/Users/henri/OneDrive -
> id.uff.br/Academic/Calculations/UniPAMPA/Triazenes/wB97X-D3/Fukui2/Fukui/no_H/meta/neut/MEP.png"
> width 4096 height 2597 supersample 4

> cd "C:/Users/henri/OneDrive -
> id.uff.br/Academic/Calculations/UniPAMPA/Triazenes/wB97X-D3/Fukui2/Fukui/no_H/meta/neut"

Current working directory is: C:\Users\henri\OneDrive -
id.uff.br\Academic\Calculations\UniPAMPA\Triazenes\wB97X-D3\Fukui2\Fukui\no_H\meta\neut  

> save "C:/Users/henri/OneDrive -
> id.uff.br/Academic/Calculations/UniPAMPA/Triazenes/wB97X-D3/Fukui2/Fukui/no_H/meta/neut/mep.cxs"

——— End of log from Sun Nov 13 19:15:33 2022 ———

opened ChimeraX session  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  

> ui mousemode right "color key"

> key blue:min #55ff00: red:max

> key blue:min lime: red:max

> key blue:min #00aa00: red:max

> key blue:min #00aa00: red:-

> key blue:+ #00aa00: red:-

> key blue:+ #00aa00:0 red:-

> key red:- #00aa00:0 blue:+

> ui mousemode right translate

> ui tool show "Color Zone"

> ui tool show "Surface Color"

> transparency #1-2,4 40

> transparency #1-2,4 60

> transparency #1-2,4 30

> lighting simple

> lighting full

> graphics silhouettes true

> hide #4 models

> select C

13 atoms, 13 bonds, 1 residue, 1 model selected  

> color sel dim gray

> select clear

> save "C:/Users/henri/OneDrive -
> id.uff.br/Academic/Calculations/UniPAMPA/Triazenes/wB97X-D3/Fukui2/Fukui/no_H/meta/neut/mep.cxs"

——— End of log from Sun Nov 13 19:52:44 2022 ———

opened ChimeraX session  

> close session

> open "C:/Users/henri/OneDrive -
> id.uff.br/Academic/Calculations/UniPAMPA/Triazenes/wB97X-D3/Fukui2/Fukui/no_H/para/neut/para-.xyz"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in <lambda>  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
Error processing trigger "add models":  
AttributeError: 'DICOMBrowserTool' object has no attribute
'_see_what_happened'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\ui\dicom_browser.py", line 128, in  
ADD_MODELS, lambda *args: self._see_what_happened(*args)  
  
See log for complete Python traceback.  
  
Opened para-.xyz as an XYZ file  




OpenGL version: 3.3.14831 Core Profile Forward-Compatible Context 21.5.2 27.20.20903.8001
OpenGL renderer: AMD Radeon R7 M440
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: en_US.cp1252
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: Dell Inc.
Model: Inspiron 5567
OS: Microsoft Windows 11 Pro (Build 22000)
Memory: 17,016,274,944
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i7-7500U CPU @ 2.70GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5rc202211120143
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.3
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.0.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.0.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.32
    psutil: 5.9.1
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pywin32: 303
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    Send2Trash: 1.8.0
    SEQCROW: 1.5.8
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.1
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.12
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    WMI: 1.5.1
    zipp: 3.10.0

Change History (3)

comment:1 by Eric Pettersen, 3 years ago

Component:	Unassigned → DICOM
Owner:	set to Zach Pearson
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → 'DICOMBrowserTool' object has no attribute '_see_what_happened'

Reported by Dr. Henrique de Castro

comment:2 by Zach Pearson, 3 years ago

Milestone:	→ 1.5

comment:3 by Zach Pearson, 3 years ago

Resolution:	→ fixed
Status:	assigned → closed

Should be fixed in tomorrow's daily build and release candidate.

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