Toolshed upload internal server error

[wolfgang.lugmayr@…]

Dear all,

It's my first upload to the ChimeraX toolshed and I tried as in the attached picture upload1.jpg just a view minutes ago.
Immediately I get the error message in picture upload2.jpg.

The wheel was tested with 
ChimeraX --nogui --cmd "devel install . ; exit"
and it works with a local ChimeraX 1.4

My bundle is like (I substitute @@VERSION@@ to 1.1.70 and ChimeraX-Core ==1.3 to >=1.4)
https://github.com/wlugmayr/chimerax-starmap/blob/main/bundle/bundle_info.xml.in

The plugin is pure Python based and needs as dependency pyparsing and pyqtgraph without any version number.

Can you please give me some advice?

Best regards,
Wolfgang

upload2.jpg​

upload1.jpg​

[wolfgang.lugmayr@…]

Added by email2trac

[wolfgang.lugmayr@…]

Added by email2trac

[Greg Couch]

We had a configuration error that limited uploaded bundles to 12.5 Mbytes. Please try again.

[wolfgang.lugmayr@…]

Dear all,

I just tried and the same internal server error still appears.

My bundle size is 3.44MB and located here:
https://github.com/wlugmayr/chimerax-starmap/blob/main/dist/ChimeraX_StarMap-1.1.70-py3-none-any.whl

It works with "-m pip install --user" on ChimeraX 1.4.

Cheers,
Wolfgang


----- Original Message -----
From: "ChimeraX" <ChimeraX-bugs-admin@cgl.ucsf.edu>
Cc: chimerax-programmers@cgl.ucsf.edu, "gregc" <gregc@cgl.ucsf.edu>, "Wolfgang Lugmayr" <wolfgang.lugmayr@cssb-hamburg.de>
Sent: Wednesday, 9 November, 2022 23:37:51
Subject: Re: [ChimeraX] #7976: Toolshed upload internal server error

#7976: Toolshed upload internal server error
-----------------------------------------+------------------------
          Reporter:  wolfgang.lugmayr@…  |      Owner:  Greg Couch
              Type:  defect              |     Status:  assigned
          Priority:  major               |  Milestone:
         Component:  Tool Shed           |    Version:
        Resolution:                      |   Keywords:
        Blocked By:                      |   Blocking:
Notify when closed:                      |   Platform:  all
           Project:  ChimeraX            |
-----------------------------------------+------------------------

Comment (by Greg Couch):

 We had a configuration error that limited uploaded bundles to 12.5 Mbytes.
 Please try again.

--
Ticket URL: <https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/7976#comment:2>
ChimeraX <https://www.rbvi.ucsf.edu/chimerax/>
ChimeraX Issue Tracker

[Greg Couch]

I see in the apache ssl_error_log:

[Thu Nov 10 00:48:25.008225 2022] [:error] [pid 222625] [client 94.134.109.94:28656] [client 94.134.109.94] ModSecurity: Access denied with code 44 (phase 2). Match of "eq 0" against "MULTIPART_UNMATCHED_BOUNDARY" required. [file "/usr/local/www/cxtoolshed-conf.d/mod_security.conf"] [line "30"] [id "200003"] [msg "Multipart parser detected a possible unmatched boundary."] [hostname "cxtoolshed.rbvi.ucsf.edu"] [uri "/submit_app/"] [unique_id "Y2y61b1ijYoY9Yzy1nLQbAAAAA8"], referer: https://cxtoolshed.rbvi.ucsf.edu/submit_app/
[Thu Nov 10 00:48:25.031009 2022] [http:error] [pid 222625] [client 94.134.109.94:28656] AH01579: Invalid response status 44, referer: https://cxtoolshed.rbvi.ucsf.edu/submit_app/

Will investigate more tomorrow.

[wolfgang.lugmayr@…]

Dear all,

I tried the upload also with a different browser (recent Firefox and Opera GX) to avoid a browser issue on my side and both run into this upload error.

Cheers,
Wolfgang

[Greg Couch]

I put a fix in, please try uploading again and confirm that it works. The bug was mod_security bug, ​https://github.com/SpiderLabs/ModSecurity/issues/652.

[wolfgang.lugmayr@…]

Dear all,

it seems that it works now.
I got a page with "Submission Done" message.

Thanks & cheers,
Wolfgang


----- Original Message -----
From: "ChimeraX" <ChimeraX-bugs-admin@cgl.ucsf.edu>
Cc: chimerax-programmers@cgl.ucsf.edu, "gregc" <gregc@cgl.ucsf.edu>, "Wolfgang Lugmayr" <wolfgang.lugmayr@cssb-hamburg.de>
Sent: Friday, 11 November, 2022 09:50:35
Subject: Re: [ChimeraX] #7976: Toolshed upload internal server error

#7976: Toolshed upload internal server error
-----------------------------------------+------------------------
          Reporter:  wolfgang.lugmayr@…  |      Owner:  Greg Couch
              Type:  defect              |     Status:  closed
          Priority:  major               |  Milestone:
         Component:  Tool Shed           |    Version:
        Resolution:  fixed               |   Keywords:
        Blocked By:                      |   Blocking:
Notify when closed:                      |   Platform:  all
           Project:  ChimeraX            |
-----------------------------------------+------------------------
Changes (by Greg Couch):

 * status:  assigned => closed
 * resolution:   => fixed


Comment:

 I put a fix in, please try uploading again and confirm that it works.  The
 bug was mod_security bug,
 https://github.com/SpiderLabs/ModSecurity/issues/652.

--
Ticket URL: <https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/7976#comment:6>
ChimeraX <https://www.rbvi.ucsf.edu/chimerax/>
ChimeraX Issue Tracker

[Greg Couch]

Excellent. Thank you for confirming it worked.