Restore new session in old ChimeraX

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open D:\Documents_D\Schlessinger\KIT\SCF.cxs format session

Log from Sat Nov 5 11:40:43 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/Users/cutie/Desktop/1exz.pdb

1exz.pdb title:  
Structure of stem cell factor [more info...]  
  
Chain information for 1exz.pdb #1  
---  
Chain | Description | UniProt  
A | SCF | SCF_HUMAN  
B | SCF | SCF_HUMAN  
C | SCF | SCF_HUMAN  
D | SCF | SCF_HUMAN  
  
Non-standard residues in 1exz.pdb #1  
---  
CA — calcium ion  
SM — samarium (III) ion  
TRS — 2-amino-2-hydroxymethyl-propane-1,3-diol (tris buffer)  
  

> select /D:675

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select add /C:417

17 atoms, 15 bonds, 2 residues, 1 model selected  

> select add /B:802@SM

18 atoms, 15 bonds, 3 residues, 1 model selected  

> select up

247 atoms, 245 bonds, 33 residues, 1 model selected  

> select up

3151 atoms, 3105 bonds, 498 residues, 1 model selected  

> select down

247 atoms, 245 bonds, 33 residues, 1 model selected  

> select subtract /B:802@SM

246 atoms, 245 bonds, 32 residues, 1 model selected  

> select up

2045 atoms, 2013 bonds, 324 residues, 1 model selected  

> select up

4236 atoms, 4174 bonds, 667 residues, 1 model selected  

> select down

2045 atoms, 2013 bonds, 324 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select ::name="CA"

1 atom, 1 residue, 1 model selected  

> delete atoms sel

> delete bonds sel

> select ::name="HOH"

67 atoms, 67 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select ::name="SM"

2 atoms, 2 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> hide atoms

> set bgColor white

> select /B:258

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

143 atoms, 144 bonds, 18 residues, 1 model selected  

> select up

1072 atoms, 1092 bonds, 140 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #daebf9ff

> color sel #ccccccff

> color sel #a0a0a0ff

> color sel #9d9ac8ff

> color sel #c8bc8aff

> color sel #ffffffff

> color sel #e9e9e9ff

> color sel #e6e6e6ff

> color sel #474747ff

> color sel #ffffffff

> color sel #ffe500ff

> color sel #ffffffff

> color sel #f6bcf2ff

> color sel #fe94fcff

> color sel #fe95fbff

> color sel #e782deff

> color sel #ae64a8ff

> color sel #965492ff

> color sel #864c83ff

> color sel #8a4d83ff

> color sel #cd72c4ff

> color sel #c371baff

> color sel #c872c0ff

> color sel #b869b1ff

> color sel #c972c1ff

> color sel #d47accff

> color sel #db7cd3ff

> color sel #ff95faff

> color sel #ef88e3ff

> color sel #b467aeff

> color sel #af65a7ff

> color sel #93558eff

> color sel #b968b2ff

> color sel #e186dbff

> color sel #eb85e3ff

> color sel #9762a7ff

> color sel #db82e0ff

> color sel #ff97ffff

> color sel #fe95fdff

> color sel #fe93f6ff

> color sel #f68cebff

> color sel #be6cb5ff

> color sel #c872bfff

> color sel #ce73c3ff

> color sel #c873c1ff

> color sel #c36ebbff

> color sel #dc7dd1ff

> select /A:83

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

182 atoms, 182 bonds, 23 residues, 1 model selected  

> select up

1049 atoms, 1069 bonds, 133 residues, 1 model selected  

> color sel #d7e9f8ff

> color sel #ccbea3ff

> color sel #ccccccff

> color sel #f0f0f0ff

> color sel #ddddddff

> color sel #e6e6e6ff

> color sel #ffffffff

> color sel #e6c395ff

> color sel #ffffffff

> color sel #ffdf00ff

> color sel #d7aa00ff

> color sel #e6b600ff

> color sel #3b2e02ff

> color sel #92528dff

> color sel #dc7dd5ff

> color sel #8a4e84ff

> color sel #73406eff

> color sel #593257ff

> color sel #502d4eff

> color sel #5e355bff

> color sel #62385eff

> color sel #60365eff

> color sel #542f53ff

> color sel #4f2e4dff

> color sel #7e4879ff

> color sel #985892ff

> color sel #c771beff

> color sel #c571beff

> color sel #bb6ab4ff

> color sel #b567afff

> color sel #93538cff

> color sel #693b65ff

> color sel #965490ff

> color sel #c771bfff

> color sel #90528aff

> color sel #552f50ff

> color sel #8d5187ff

> color sel #a55d9dff

> color sel #a75d9eff

> color sel #b062a7ff

> color sel #a85fa1ff

> color sel #af63a7ff

> color sel #a15b99ff

> color sel #a961a2ff

> color sel #a25c9dff

> color sel #ae64a9ff

> color sel #a15d9cff

> color sel #9b5691ff

> color sel #5ba163ff

> color sel #97558fff

> color sel #90518aff

> color sel #5da463ff

> color sel #9e5998ff

> color sel #91528cff

> color sel #814a7fff

> color sel #90bf93ff

> color sel #563053ff

> color sel #5b3358ff

> color sel #63385eff

> color sel #683b64ff

> color sel #653a5fff

> color sel #693c63ff

> select clear

[Repeated 1 time(s)]

> select /A:137

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select add /A:138

14 atoms, 12 bonds, 2 residues, 1 model selected  

> select add /A:139

21 atoms, 18 bonds, 3 residues, 1 model selected  

> hide sel cartoons

> save C:/Users/cutie/Desktop/SCF.cxs

> lighting simple

> lighting soft

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> graphics silhouettes false

> graphics silhouettes true

> lighting shadows false

> lighting shadows true

> lighting flat

> lighting shadows true intensity 0.5

> lighting full

> graphics silhouettes false

> graphics silhouettes true

> lighting shadows false

> lighting simple

> lighting full

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting shadows false

> select /B:341

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select add /B:340

12 atoms, 10 bonds, 2 residues, 1 model selected  

> select add /B:339

19 atoms, 16 bonds, 3 residues, 1 model selected  

> hide sel cartoons

> lighting simple

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting simple

> lighting full

> lighting shadows false

> lighting shadows true

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting soft

> save D:\Documents_D\Schlessinger\KIT\SCF.png supersample 3 pixelSize 0.02

> lighting simple

> save D:\Documents_D\Schlessinger\KIT\SCF1.png supersample 3 pixelSize 0.02

> lighting full

[Repeated 1 time(s)]

> lighting simple

> lighting shadows true

> lighting full

> save D:\Documents_D\Schlessinger\KIT\SCF3.png supersample 3 pixelSize 0.02

> lighting shadows false

> save D:\Documents_D\Schlessinger\KIT\SCF4.png supersample 3 pixelSize 0.02

> save D:/Documents_D/Schlessinger/KIT/SCF.cxs

——— End of log from Sat Nov 5 11:40:43 2022 ———

opened ChimeraX session  

> select /A:57

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

143 atoms, 144 bonds, 18 residues, 1 model selected  

> select up

1049 atoms, 1069 bonds, 133 residues, 1 model selected  

> select add /B:279

1057 atoms, 1076 bonds, 134 residues, 1 model selected  

> select down

1057 atoms, 1076 bonds, 134 residues, 1 model selected  

> select clear

> select /A:77

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

182 atoms, 182 bonds, 23 residues, 1 model selected  

> select up

1049 atoms, 1069 bonds, 133 residues, 1 model selected  

> color sel orange

> select /B:313

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

130 atoms, 133 bonds, 15 residues, 1 model selected  

> select up

1072 atoms, 1092 bonds, 140 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel sandy brown

> select /A:73

12 atoms, 12 bonds, 1 residue, 1 model selected  

> select up

182 atoms, 182 bonds, 23 residues, 1 model selected  

> select up

1049 atoms, 1069 bonds, 133 residues, 1 model selected  

> color sel green

> color sel forest green

> color sel medium sea green

> select clear

> save C:/Users/cutie/Desktop/SCF1.cxs

> close session

> open C:/Users/cutie/Desktop/test3.cxs

Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\session.py", line 725, in restore  
obj = sm.restore_snapshot(self, data)  
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 1346, in restore_snapshot  
s.set_state_from_snapshot(session, data)  
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 1353, in set_state_from_snapshot  
Structure.set_state_from_snapshot(self, session, data['structure state'])  
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 214, in set_state_from_snapshot  
StructureData.set_state_from_snapshot(self, session, data['structure state'])  
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1799, in set_state_from_snapshot  
f(self._c_pointer, data['version'], tuple(data['ints']),
tuple(data['floats']), tuple(data['misc']))  
TypeError: Don't know how to restore new session data; update your version of
ChimeraX  
  
opened ChimeraX session  

> open C:/Users/cutie/Desktop/test3.cxs

Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\session.py", line 725, in restore  
obj = sm.restore_snapshot(self, data)  
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 1346, in restore_snapshot  
s.set_state_from_snapshot(session, data)  
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 1353, in set_state_from_snapshot  
Structure.set_state_from_snapshot(self, session, data['structure state'])  
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\structure.py", line 214, in set_state_from_snapshot  
StructureData.set_state_from_snapshot(self, session, data['structure state'])  
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\atomic\molobject.py", line 1799, in set_state_from_snapshot  
f(self._c_pointer, data['version'], tuple(data['ints']),
tuple(data['floats']), tuple(data['misc']))  
TypeError: Don't know how to restore new session data; update your version of
ChimeraX  
  
opened ChimeraX session  

> color spring green

[Repeated 1 time(s)]




OpenGL version: 3.3.0 NVIDIA 376.54
OpenGL renderer: GeForce GTX 950M/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Acer
Model: Aspire VN7-572G
OS: Microsoft Windows 10 Home (Build 19045)
Memory: 8,499,658,752
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i7-6500U CPU @ 2.50GHz
OSLanguage: de-DE
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1