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Opened 3 years ago
Closed 3 years ago
#7933 closed defect (nonchimerax)
Crash using the color chooser
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-12.3.1-arm64-arm-64bit
ChimeraX Version: 1.5rc202210241843 (2022-10-24 18:43:45 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Thread 0x00000002b9be7000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1297 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000028301f000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000282013000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000281007000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000017f693000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000017e687000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000017d67b000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000017c66f000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000017b663000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000017a657000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000017964b000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000017863f000 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x00000001025a8580 (most recent call first):
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 880 in init
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1031 in
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/bh/7vy47_yn71d74hf5k5k9znvh0000gn/T/AppTranslocation/A72895B4-A4FA-4447-987E-D8ACC7E3CCA7/d/ChimeraX-1.5-rc2022.10.24.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2022-11-01 21:04:43.00 +0000","app_version":"1.5.0","slice_uuid":"a5992708-d5b4-36ec-ac0a-e525f6105b56","build_version":"1.5.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.3.1 (21E258)","incident_id":"6935FC9E-1330-40A9-8A83-C63BB58BCC88","name":"ChimeraX"}
{
"uptime" : 160000,
"procLaunch" : "2022-11-01 21:02:14.9068 +0000",
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookAir10,1",
"procStartAbsTime" : 3976247716330,
"coalitionID" : 7977,
"osVersion" : {
"train" : "macOS 12.3.1",
"build" : "21E258",
"releaseType" : "User"
},
"captureTime" : "2022-11-01 21:04:33.4920 +0000",
"incident" : "6935FC9E-1330-40A9-8A83-C63BB58BCC88",
"bug_type" : "309",
"pid" : 20336,
"procExitAbsTime" : 3979573197725,
"translated" : false,
"cpuType" : "ARM-64",
"procName" : "ChimeraX",
"procPath" : "\/Volumes\/VOLUME\/*\/ChimeraX-1.5-rc2022.10.24.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.5.0","CFBundleVersion":"1.5.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"992F5592-917D-5E32-A183-8308FCE1FB5E","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "836E4CC9-8D55-AE2F-FF8C-2E3659162482",
"wakeTime" : 5771,
"sleepWakeUUID" : "21F4A88D-8735-4510-96EC-8CF48D82C6EA",
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}
===== Log before crash start =====
UCSF ChimeraX version: 1.5rc202210241843 (2022-10-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/rafaelamartins/Downloads/test_edc5f.result/test_edc5f_unrelaxed_rank_3_model_1.pdb
> format pdb
Chain information for test_edc5f_unrelaxed_rank_3_model_1.pdb #1
---
Chain | Description
A | No description available
> close session
> open
> /Users/rafaelamartins/Downloads/swissmodel-2/Untitled_Project/models/01/model.pdb
> format pdb
model.pdb title:
SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more
info...]
Chain information for model.pdb #1
---
Chain | Description
A | No description available
Non-standard residues in model.pdb #1
---
C2O — (C2O)
CU — (CU)
> select coil
1875 atoms, 1876 bonds, 244 residues, 1 model selected
> color sel #d783ffff
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5rc202210241843 (2022-10-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir10,1
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 7459.101.3
OS Loader Version: 7459.101.3
Software:
System Software Overview:
System Version: macOS 12.3.1 (21E258)
Kernel Version: Darwin 21.4.0
Time since boot: 11 days 12:03
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.0.8
Babel: 2.10.3
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.4
ChimeraX-AtomicLibrary: 8.0.2
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5rc202210241843
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.2
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.3
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.1.1
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.0.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 4.11.2
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.3
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
prompt-toolkit: 3.0.31
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.5
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.2.1
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.5.1
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.12
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.10.0
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using the color chooser |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | accepted → closed |
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