Crash deleting atoms

[lochuynh@…]

The following bug report has been submitted:
Platform:        macOS-11.6.1-arm64-arm-64bit
ChimeraX Version: 1.5.dev202209200803 (2022-09-20 08:03:20 UTC)
Description
My apology, it did NOT do the "delete atoms" command.

Log:
UCSF ChimeraX version: 1.5.dev202209200803 (2022-09-20)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "/Users/lochuynh/OneDrive - University of Florida/LAB RESEARCH/123
> TALKs/2022_09 CBI-Pharmacy/Sau ES-AU 2022_0922 v3.cxs" format session

Log from Thu Sep 22 15:15:12 2022UCSF ChimeraX version: 1.5.dev202209200803
(2022-09-20)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "/Volumes/GoogleDrive/Shared drives/Harris Lab Shared
> Drive/Research/Manuscripts/MOLEC_Type B cryoEM/saEM/Sau ES-AU 2022_0812.cxs"

Log from Wed Sep 21 11:27:17 2022UCSF ChimeraX version: 1.5.dev202209200803
(2022-09-20)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> set bgColor transparent

Log from Fri Sep 16 00:36:57 2022UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "/Volumes/GoogleDrive/Shared drives/Harris Lab Shared
> Drive/Research/Manuscripts/MOLEC_Type B cryoEM/cryoEM/Sau ES-AU v1.cxs"
> format session

Log from Fri Aug 12 16:35:20 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Volumes/GoogleDrive/Shared drives/Harris Lab Shared
> Drive/Research/Manuscripts/MOLEC_Type B cryoEM/saES.pdb"

Summary of feedback from opening /Volumes/GoogleDrive/Shared drives/Harris Lab
Shared Drive/Research/Manuscripts/MOLEC_Type B cryoEM/saES.pdb  
---  
warnings | Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
2596 messages similar to the above omitted  
  
Chain information for saES.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
  

> select /A:1-115

945 atoms, 958 bonds, 115 residues, 1 model selected  

> select /C:900-977

1656 atoms, 1850 bonds, 78 residues, 1 model selected  

> color sel forest green

> select /B:0-390

9097 atoms, 10034 bonds, 5 pseudobonds, 366 residues, 2 models selected  

> color (#!1 & sel) medium blue

> color (#!1 & sel) cornflower blue

> cd "/Volumes/GoogleDrive/Shared drives/Harris Lab Shared
> Drive/Research/Manuscripts/MOLEC_Type B cryoEM/cryoEM"

Current working directory is: /Volumes/GoogleDrive/Shared drives/Harris Lab
Shared Drive/Research/Manuscripts/MOLEC_Type B cryoEM/cryoEM  

> save "/Volumes/GoogleDrive/Shared drives/Harris Lab Shared
> Drive/Research/Manuscripts/MOLEC_Type B cryoEM/cryoEM/Sau ES-AU v1.cxs"

——— End of log from Fri Aug 12 16:35:20 2022 ———

opened ChimeraX session  

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> sequence chain /B

Alignment identifier is 1/B  

> sequence chain /C

Alignment identifier is 1/C  

> select /C:977

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /C:900-977

1656 atoms, 1850 bonds, 78 residues, 1 model selected  

> select /A:112-115

35 atoms, 34 bonds, 4 residues, 1 model selected  

> select /A:1-115

945 atoms, 958 bonds, 115 residues, 1 model selected  

> name frozen rnpA sel

[Repeated 1 time(s)]

> select /B:0

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select /B:0-390

9097 atoms, 10034 bonds, 5 pseudobonds, 366 residues, 2 models selected  

> name frozen rnpB sel

[Repeated 1 time(s)]

> select /C:977

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /C:900-977

1656 atoms, 1850 bonds, 78 residues, 1 model selected  

> name frozen ptRNA sel

[Repeated 1 time(s)]

> select /C:900

20 atoms, 22 bonds, 1 residue, 1 model selected  

> select /C:900-904

102 atoms, 113 bonds, 5 residues, 1 model selected  

> select /A:114-115

17 atoms, 16 bonds, 2 residues, 1 model selected  

> select /A:1-115

945 atoms, 958 bonds, 115 residues, 1 model selected  

> surface sel

> surface style mesh

> ui tool show "Color Actions"

> color sel goldenrod

> color sel gold

> color sel burly wood

> color sel olive

> color sel chocolate

> color sel saddle brown

> color sel orange

> color sel dark orange

> transparency (#!1 & sel) 50

> select ~sel

10753 atoms, 11884 bonds, 5 pseudobonds, 444 residues, 2 models selected  

> select clear

> select /B:390

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:35-390

8272 atoms, 9121 bonds, 4 pseudobonds, 331 residues, 2 models selected  

> select /B:357-390

891 atoms, 979 bonds, 34 residues, 1 model selected  

> select /B:0-390

9097 atoms, 10034 bonds, 5 pseudobonds, 366 residues, 2 models selected  

> select /B:357-390

891 atoms, 979 bonds, 34 residues, 1 model selected  

> select /B:0-390

9097 atoms, 10034 bonds, 5 pseudobonds, 366 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel deep sky blue

> color sel cornflower blue

> color sel dodger blue

> color sel cornflower blue

> color sel steel blue

> color sel royal blue

> color sel dodger blue target a

> color sel coral target a

> color sel chartreuse target c

> color sel salmon target l

> color sel royal blue target c

> color sel cornflower blue target acspfl

> color sel royal blue target c

> select /C:905

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select /C:900-905

125 atoms, 139 bonds, 6 residues, 1 model selected  

> select /C:900

20 atoms, 22 bonds, 1 residue, 1 model selected  

> select /C:900-904

102 atoms, 113 bonds, 5 residues, 1 model selected  

> color sel red

> save "/Volumes/GoogleDrive/Shared drives/Harris Lab Shared
> Drive/Research/Manuscripts/MOLEC_Type B cryoEM/cryoEM/Sau ES-AU
> 2022_0812.cxs"

> select /B:0-390

9097 atoms, 10034 bonds, 5 pseudobonds, 366 residues, 2 models selected  

> select /B:386

33 atoms, 35 bonds, 1 residue, 1 model selected  

> select /B:386-390

136 atoms, 147 bonds, 5 residues, 1 model selected  

> select /B:329

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select clear

[Repeated 3 time(s)]

> select /B:167

31 atoms, 32 bonds, 1 residue, 1 model selected  

> select clear

> select /B:199

30 atoms, 31 bonds, 1 residue, 1 model selected  

> select clear

[Repeated 1 time(s)]

> save "/Volumes/GoogleDrive/Shared drives/Harris Lab Shared
> Drive/Research/Manuscripts/MOLEC_Type B cryoEM/cryoEM/Sau ES-AU
> 2022_0812.cxs"

——— End of log from Fri Sep 16 00:36:57 2022 ———

opened ChimeraX session  

> select /B:39

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:73

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /A:72-115

352 atoms, 355 bonds, 44 residues, 1 model selected  

> select /A

945 atoms, 958 bonds, 115 residues, 1 model selected  

> color (#!1 & sel) orange

> color (#!1 & sel) orange red

> color (#!1 & sel) orange

> transparency (#!1 & sel) 70

> transparency (#!1 & sel) 30

> save "/Volumes/GoogleDrive/Shared drives/Harris Lab Shared
> Drive/Research/Manuscripts/MOLEC_Type B cryoEM/saEM/Sau ES-AU 2022_0812.cxs"

> select /B:166

33 atoms, 35 bonds, 1 residue, 1 model selected  

> select /B:166

33 atoms, 35 bonds, 1 residue, 1 model selected  

> select /C:961

20 atoms, 21 bonds, 1 residue, 1 model selected  

> save "/Volumes/GoogleDrive/Shared drives/Harris Lab Shared
> Drive/Research/Manuscripts/MOLEC_Type B cryoEM/saEM/Sau ES-AU 2022_0812.cxs"

——— End of log from Wed Sep 21 11:27:17 2022 ———

opened ChimeraX session  

> set bgColor white

> select clear

> save "/Users/lochuynh/Google Drive/Shared drives/Harris Lab Shared
> Drive/Research/Manuscripts/MOLEC_Type B cryoEM/saEM/Sau ES-AU 2022_0812.cxs"

> save "/Users/lochuynh/OneDrive - University of Florida/LAB RESEARCH/123
> TALKs/2022_09 CBI-Pharmacy/Sau ES-AU 2022_0922.cxs"

> ui tool show "Show Sequence Viewer"

> sequence chain /C

Destroying pre-existing alignment with identifier 1/C  
Alignment identifier is 1/C  

> select /C:959

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /C:959-964

127 atoms, 141 bonds, 6 residues, 1 model selected  

> select clear

> save "/Users/lochuynh/OneDrive - University of Florida/LAB RESEARCH/123
> TALKs/2022_09 CBI-Pharmacy/Sau ES-AU 2022_0922.cxs"

> save "/Users/lochuynh/OneDrive - University of Florida/LAB RESEARCH/123
> TALKs/2022_09 CBI-Pharmacy/Sau ES-AU 2022_0922 v2.cxs"

> select /B:322-390

1180 atoms, 1295 bonds, 1 pseudobond, 45 residues, 2 models selected  

> select /B

9097 atoms, 10034 bonds, 5 pseudobonds, 366 residues, 2 models selected  

> surface (#!1 & sel)

> color sel bynucleotide

> undo

[Repeated 1 time(s)]

> ui tool show "Color Actions"

> ui favorite true Toolbar

> ui tool show Toolbar

[Repeated 1 time(s)]

> ui favorite false Toolbar

> ui dockable false Toolbar

> select /B:322-390

1180 atoms, 1295 bonds, 1 pseudobond, 45 residues, 2 models selected  

> select /B

9097 atoms, 10034 bonds, 5 pseudobonds, 366 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel cornflower blue

> color sel blue

> color sel cornflower blue

> color sel medium blue

> color sel cornflower blue

> color sel dodger blue

> color sel cornflower blue

> color sel steel blue

> select /C:977

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /C

1656 atoms, 1850 bonds, 78 residues, 1 model selected  
No visible Surface models selected  

> surface sel

> color sel pale green

> color sel forest green

> select /C:919-920

43 atoms, 47 bonds, 2 residues, 1 model selected  

> select /C:919-947

616 atoms, 688 bonds, 29 residues, 1 model selected  

> select /C:910

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /C:910-913

85 atoms, 94 bonds, 4 residues, 1 model selected  

> select /C:905

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select /C:905-911

151 atoms, 168 bonds, 7 residues, 1 model selected  

> select /C:912

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /C:912-953

895 atoms, 1000 bonds, 42 residues, 1 model selected  

> select clear

> save "/Users/lochuynh/OneDrive - University of Florida/LAB RESEARCH/123
> TALKs/2022_09 CBI-Pharmacy/Sau ES-AU 2022_0922 v2.cxs"

> save "/Users/lochuynh/OneDrive - University of Florida/LAB RESEARCH/123
> TALKs/2022_09 CBI-Pharmacy/Sau ES-AU 2022_0922 v3.cxs"

——— End of log from Thu Sep 22 15:15:12 2022 ———

opened ChimeraX session  




OpenGL version: 4.1 Metal - 71.7.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.1
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac mini
      Model Identifier: Macmini9,1
      Chip: Apple M1
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 7429.41.5
      OS Loader Version: 6723.140.2

Software:

    System Software Overview:

      System Version: macOS 11.6.1 (20G224)
      Kernel Version: Darwin 20.6.0
      Time since boot: 22:23

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        LG HDR 4K:
          Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
          UI Looks like: 2560 x 1440 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: Yes
        LG HDR 4K:
          Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
          UI Looks like: 2560 x 1440 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: Yes


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.0.8
    Babel: 2.10.3
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.3
    ChimeraX-AtomicLibrary: 7.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0
    ChimeraX-CheckWaters: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.2
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5.dev202209200803
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.7
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.7
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.1
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.3
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.0.0
    filelock: 3.7.1
    fonttools: 4.37.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 4.12.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 4.11.1
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.5
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.3
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    prompt-toolkit: 3.0.31
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.1
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.1
    python-dateutil: 2.8.2
    pytz: 2022.2.1
    pyzmq: 24.0.0
    qtconsole: 5.3.1
    QtPy: 2.2.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.5.0
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.12
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.8.1

[pett]

followup to #7661