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Opened 3 years ago
Last modified 3 years ago
#7657 assigned defect
glDrawBuffer: invalid operation
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.15.0-41-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.5.dev202205140117 (2022-05-14 01:17:27 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.5.dev202205140117 (2022-05-14)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 3jcj
Summary of feedback from opening 3jcj fetched from pdb
---
warnings | Unable to fetch template for 'MG': might have incorrect bonds
Unable to fetch template for 'ZN': might have incorrect bonds
Unable to fetch template for 'GNP': might have incorrect bonds
Unable to fetch template for 'FME': might have incorrect bonds
Unable to fetch template for '4SU': might have incorrect bonds
2 messages similar to the above omitted
notes | GET_TEMPLATE MG
GET_TEMPLATE ZN
GET_TEMPLATE GNP
GET_TEMPLATE FME
GET_TEMPLATE 4SU
GET_TEMPLATE H2U
GET_TEMPLATE 5MU
3jcj title:
Structures of ribosome-bound initiation factor 2 reveal the mechanism of
subunit association [more info...]
Chain information for 3jcj #1
---
Chain | Description | UniProt
0 | 5S ribosomal RNA |
1 | 30S ribosomal protein S18 | RS18_ECOLI
2 | 30S ribosomal protein S21 | RS21_ECOLI
3 | 30S ribosomal protein S20 | RS20_ECOLI
4 | messenger RNA |
A | 23S ribosomal RNA |
B | 50S ribosomal protein L2 | RL2_ECOLI
C | 50S ribosomal protein L3 | RL3_ECOLI
D | 50S ribosomal protein L4 | RL4_ECOLI
E | 50S ribosomal protein L5 | RL5_ECOLI
F | 50S ribosomal protein L6 | RL6_ECOLI
G | 50S ribosomal protein L9 | RL9_ECOLI
H | 50S ribosomal protein L11 | RL11_ECOLI
I | 50S ribosomal protein L13 | RL13_ECOLI
J | 50S ribosomal protein L14 | RL14_ECOLI
K | 50S ribosomal protein L15 | RL15_ECOLI
L | 50S ribosomal protein L16 | RL16_ECOLI
M | 50S ribosomal protein L17 | RL17_ECOLI
N | 50S ribosomal protein L18 | RL18_ECOLI
O | 50S ribosomal protein L19 | RL19_ECOLI
P | 50S ribosomal protein L20 | RL20_ECOLI
Q | 50S ribosomal protein L21 | RL21_ECOLI
R | 50S ribosomal protein L22 | RL22_ECOLI
S | 50S ribosomal protein L23 | RL23_ECOLI
T | 50S ribosomal protein L24 | RL24_ECOLI
U | 50S ribosomal protein L25 | RL25_ECOLI
V | 50S ribosomal protein L27 | RL27_ECOLI
W | 50S ribosomal protein L28 | RL28_ECOLI
X | 50S ribosomal protein L29 | RL29_ECOLI
Y | 50S ribosomal protein L30 | RL30_ECOLI
Z | 50S ribosomal protein L32 | RL32_ECOLI
a | 50S ribosomal protein L33 | RL33_ECOLI
b | 50S ribosomal protein L34 | RL34_ECOLI
c | 50S ribosomal protein L35 | RL35_ECOLI
d | 50S ribosomal protein L36 | RL36_ECOLI
e | 50S ribosomal protein L10 | RL10_ECOLI
f | Translation initiation factor IF-2 | IF2_ECOLI
g | 16S ribosomal RNA |
h | 30S ribosomal protein S3 | RS3_ECOLI
j | 30S ribosomal protein S2 | RS2_ECOLI
k | 30S ribosomal protein S5 | RS5_ECOLI
l | 30S ribosomal protein S4 | RS4_ECOLI
m | 30S ribosomal protein S7 | RS7_ECOLI
n | 30S ribosomal protein S6 | RS6_ECOLI
o | 30S ribosomal protein S9 | RS9_ECOLI
p | 30S ribosomal protein S8 | RS8_ECOLI
q | 30S ribosomal protein S11 | RS11_ECOLI
r | 30S ribosomal protein S10 | RS10_ECOLI
s | 30S ribosomal protein S13 | RS13_ECOLI
t | 30S ribosomal protein S12 | RS12_ECOLI
u | 30S ribosomal protein S15 | RS15_ECOLI
v | tRNA |
w | 30S ribosomal protein S14 | RS14_ECOLI
x | 30S ribosomal protein S17 | RS17_ECOLI
y | 30S ribosomal protein S16 | RS16_ECOLI
z | 30S ribosomal protein S19 | RS19_ECOLI
Non-standard residues in 3jcj #1
---
4SU — 4-thiouridine-5'-monophosphate
5MU — 5-methyluridine 5'-monophosphate
FME — N-formylmethionine
GNP — phosphoaminophosphonic acid-guanylate ester
H2U — 5,6-dihydrouridine-5'-monophosphate
MG — magnesium ion
ZN — zinc ion
> hide atoms
> select /f
3879 atoms, 3930 bonds, 510 residues, 1 model selected
> show sel cartoons
> select ::name="GNP"
32 atoms, 34 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 32 atom styles
> style sel ball
Changed 32 atom styles
> select ::name="MG"
195 atoms, 195 residues, 1 model selected
> show sel atoms
> select clear
Drag select of 22 atoms
> hide sel atoms
Drag select of 40 atoms
> hide sel atoms
Drag select of 11 atoms
> hide sel atoms
Drag select of 57 atoms
> hide sel atoms
Drag select of 13 atoms
> hide sel atoms
Drag select of 18 atoms
> hide sel atoms
Drag select of 10 atoms
> hide sel atoms
> select clear
Drag select of 2 atoms
> hide sel atoms
Drag select of 14 atoms
> hide sel atoms
Drag select of 3 atoms
> hide sel atoms
> select /g:1610@MG
1 atom, 1 residue, 1 model selected
> select /g:1651@MG
1 atom, 1 residue, 1 model selected
> select /g:1619@MG
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /g:1651@MG
1 atom, 1 residue, 1 model selected
> select /g:1610@MG
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /g:1651@MG
1 atom, 1 residue, 1 model selected
> hide sel atoms
> hide #!1 models
> open 2lkd
Summary of feedback from opening 2lkd fetched from pdb
---
warning | Unable to fetch template for 'GDP': might have incorrect bonds
notes | Fetching compressed mmCIF 2lkd from
http://files.rcsb.org/download/2lkd.cif
GET_TEMPLATE GDP
2lkd title:
IF2-G2 GDP complex [more info...]
Chain information for 2lkd
---
Chain | Description | UniProt
2.1/A 2.2/A 2.3/A 2.4/A 2.5/A 2.6/A 2.7/A 2.8/A 2.9/A 2.10/A 2.11/A 2.12/A
2.13/A 2.14/A 2.15/A 2.16/A 2.17/A 2.18/A | Translation initiation factor IF-2
| IF2_GEOSE
> select add #2
50149 atoms, 50598 bonds, 3223 residues, 20 models selected
> select subtract #2
1 atom, 1 residue, 1 model selected
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!1 models
> show #!2 models
> show sel atoms
> show sel cartoons
> hide #!1 models
> select ::name="HOH"
837 atoms, 837 residues, 1 model selected
> select clear
> close #2
> open 1g7r
Summary of feedback from opening 1g7r fetched from pdb
---
note | Fetching compressed mmCIF 1g7r from
http://files.rcsb.org/download/1g7r.cif
1g7r title:
X-ray structure of translation initiation factor IF2/EIF5B [more info...]
Chain information for 1g7r #2
---
Chain | Description | UniProt
A | translation initiation factor IF2/EIF5B | IF2P_METTH
> select ::name="HOH"
1102 atoms, 1102 residues, 2 models selected
> show sel & #!2 atoms
> close #2
> open 1g7ropen 1g7s
'1g7ropen' has no suffix
> open 1g7s
Summary of feedback from opening 1g7s fetched from pdb
---
warning | Unable to fetch template for 'GDP': might have incorrect bonds
notes | Fetching compressed mmCIF 1g7s from
http://files.rcsb.org/download/1g7s.cif
GET_TEMPLATE GDP
1g7s title:
X-ray structure of translation initiation factor IF2/EIF5B complexed with GDP
[more info...]
Chain information for 1g7s #2
---
Chain | Description | UniProt
A | translation initiation factor IF2/EIF5B | IF2P_METTH
Non-standard residues in 1g7s #2
---
GDP — guanosine-5'-diphosphate
> select ::name="MG"
195 atoms, 195 residues, 1 model selected
> show #!2 atoms
> hide #!2 atoms
> select ::name="GDP"
28 atoms, 30 bonds, 1 residue, 1 model selected
> show sel atoms
> close #2
> open 4b48
Summary of feedback from opening 4b48 fetched from pdb
---
warnings | Unable to fetch template for 'GTP': might have incorrect bonds
Unable to fetch template for 'MG': might have incorrect bonds
notes | Fetching compressed mmCIF 4b48 from
http://files.rcsb.org/download/4b48.cif
GET_TEMPLATE GTP
GET_TEMPLATE MG
4b48 title:
Bacterial translation initiation factor IF2 (1-363), complex with GTP [more
info...]
Chain information for 4b48 #2
---
Chain | Description | UniProt
A | translation initiation factor if-2 | IF2_THET8
Non-standard residues in 4b48 #2
---
GTP — guanosine-5'-triphosphate
MG — magnesium ion
> show #!1 models
> hide #!1 models
> select ::name="GTP"
32 atoms, 34 bonds, 1 residue, 1 model selected
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!2 models
> show #!1 target m
> hide #!1 models
> hide #!2 models
> show #!2 models
> open 2xqd
Summary of feedback from opening 2xqd fetched from pdb
---
warnings | PDB entry 2XQD has been replaced by 4V5L
Unable to fetch template for 'PAR': might have incorrect bonds
Unable to fetch template for 'ZN': might have incorrect bonds
Unable to fetch template for 'GCP': might have incorrect bonds
Unable to fetch template for 'MG': might have incorrect bonds
Expected gap or connection between A /Y:76 and TRP /Y:77
Unable to fetch template for '4SU': might have incorrect bonds
Unable to fetch template for 'H2U': might have incorrect bonds
Unable to fetch template for 'OMC': might have incorrect bonds
Unable to fetch template for 'MIA': might have incorrect bonds
Unable to fetch template for '7MG': might have incorrect bonds
1 messages similar to the above omitted
notes | Fetching compressed mmCIF 2xqd from
http://files.rcsb.org/download/2xqd.cif
GET_TEMPLATE PAR
GET_TEMPLATE ZN
GET_TEMPLATE GCP
GET_TEMPLATE MG
GET_TEMPLATE 4SU
GET_TEMPLATE H2U
GET_TEMPLATE OMC
GET_TEMPLATE MIA
GET_TEMPLATE 7MG
GET_TEMPLATE 5MU
2xqd title:
The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP
analog [more info...]
Chain information for 2xqd #3
---
Chain | Description | UniProt
A | 16S RRNA |
B | 30S ribosomal protein S2 | RS2_THET8
C | 30S ribosomal protein S3 | RS3_THET8
D | 30S ribosomal protein S4 | RS4_THET8
E | 30S ribosomal protein S5 | RS5_THETH
F | 30S ribosomal protein S6 | RS6_THETH
G | 30S ribosomal protein S7 | RS7_THET2
H | 30S ribosomal protein S8 | RS8_THETH
I | 30S ribosomal protein S9 | RS9_THET2
J | 30S ribosomal protein S10 | RS10_THETH
K | 30S ribosomal protein S11 | RS11_THET8
L | 30S ribosomal protein S12 | RS12_THETH
M | 30S ribosomal protein S13 | RS13_THET8
N | 30S ribosomal protein S14 | RS14Z_THETH
O | 30S ribosomal protein S15 | RS15_THETH
P | 30S ribosomal protein S16 | RS16_THETH
Q | 30S ribosomal protein S17 | RS17_THET8
R | 30S ribosomal protein S18 | RS18_THET2
S | 30S ribosomal protein S19 | RS19_THETH
T | 30S ribosomal protein S20 | RS20_THET8
U | 30S ribosomal protein THX | RSHX_THETH
V W | E-site TRNA phe or P-site TRNA phe |
X | MRNA |
Y | A-site TRNA G24A TRP-TRNA TRP |
Z | elongation factor tu | EFTU2_THET8
Non-standard residues in 2xqd #3
---
4SU — 4-thiouridine-5'-monophosphate
5MU — 5-methyluridine 5'-monophosphate
7MG — 7N-methyl-8-hydroguanosine-5'-monophosphate
GCP — phosphomethylphosphonic acid guanylate ester
H2U — 5,6-dihydrouridine-5'-monophosphate
MG — magnesium ion
MIA — 2-methylthio-N6-isopentenyl-adenosine-5'-monophosphate
OMC — O2'-methylycytidine-5'-monophosphate
PAR — paromomycin (paromomycin I, amminosidin, catenulin, crestomycin,
monomycin A, neomycin E)
ZN — zinc ion
> hide #!2 models
> hide #!3 atoms
> sequence chain #3/Z
Alignment identifier is 3/Z
> select #3/Z:1-405
3142 atoms, 3203 bonds, 405 residues, 1 model selected
> select #3/Z
3176 atoms, 3237 bonds, 4 pseudobonds, 408 residues, 2 models selected
> show sel cartoons
> select ::name="GCP"
32 atoms, 34 bonds, 1 residue, 1 model selected
> show sel atoms
> select ::name="MG"
197 atoms, 197 residues, 3 models selected
> show sel & #!3 atoms
> select ::name="HOH"
863 atoms, 863 residues, 3 models selected
> show sel & #!3 atoms
> open 2xqe
Summary of feedback from opening 2xqe fetched from pdb
---
warning | PDB entry 2XQE has been replaced by 4V5L
note | Fetching compressed mmCIF 2xqe from
http://files.rcsb.org/download/2xqe.cif
2xqe title:
The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP
analog [more info...]
Chain information for 2xqe #4
---
Chain | Description | UniProt
0 | 50S ribosomal protein L27 | RL27_THET8
1 | 50S ribosomal protein L28 | RL28_THET8
2 | 50S ribosomal protein L29 | RL29_THET8
3 | 50S ribosomal protein L30 | RL30_THET8
4 | 50S ribosomal protein L31 | RL31_THET8
5 | 50S ribosomal protein L32 | RL32_THET8
6 | 50S ribosomal protein L33 | RL33_THET8
7 | 50S ribosomal protein L34 | RL34_THET8
8 | 50S ribosomal protein L35 | RL35_THET8
9 | 50S ribosomal protein L36 | RL36_THET8
A | 23S ribosomal RNA |
B | 5S ribosomal RNA |
C | 50S ribosomal protein L1 | RL1_THET8
D | 50S ribosomal protein L2 | RL2_THET8
E | 50S ribosomal protein L3 | RL3_THET8
F | 50S ribosomal protein L4 | RL4_THET8
G | 50S ribosomal protein L5 | RL5_THET8
H | 50S ribosomal protein L6 | RL6_THET8
J | 50S ribosomal protein L10 |
K | 50S ribosomal protein L11 |
N | 50S ribosomal protein L13 | RL13_THET8
O | 50S ribosomal protein L14 | RL14_THET8
P | 50S ribosomal protein L15 | RL15_THET8
Q | 50S ribosomal protein L16 | RL16_THET8
R | 50S ribosomal protein L17 | RL17_THET8
S | 50S ribosomal protein L18 | RL18_THET8
T | 50S ribosomal protein L19 | RL19_THET8
U | 50S ribosomal protein L20 | RL20_THET8
V | 50S ribosomal protein L21 | RL21_THET8
W | 50S ribosomal protein L22 | RL22_THET8
X | 50S ribosomal protein L23 | RL23_THET8
Y | 50S ribosomal protein L24 | RL24_THET8
Z | 50S ribosomal protein L25 | RL25_THET8
> hide sel & #!3 atoms
> hide sel & #!3 cartoons
> hide #!4 target m
> hide #!3 models
> select ::name="GTP"
32 atoms, 34 bonds, 1 residue, 1 model selected
> show #!3 models
> select ::name="GTP"
32 atoms, 34 bonds, 1 residue, 1 model selected
> show #!2 models
> select ::name="GCP"
32 atoms, 34 bonds, 1 residue, 1 model selected
> show sel atoms
> close #4
> hide #!3 models
> show #!2 target m
> show #!2 cartoons
> select #2/A:2025@O
1 atom, 1 residue, 1 model selected
> select #2/A:1356@MG
1 atom, 1 residue, 1 model selected
> select add #2/A:2025@O
2 atoms, 2 residues, 1 model selected
> ui tool show Distances
> distance #2/A:1356@MG #2/A:2025@O
Distance between 4b48 #2/A MG 1356 MG and HOH 2025 O: 3.085Å
> distance style symbol false
[Repeated 2 time(s)]
> distance style symbol true
[Repeated 2 time(s)]
> distance style symbol false
[Repeated 2 time(s)]
> save /home/willy/projects/30s/if2/pdbs/3jcj-4b48-alignment.cxs
> mmaker #2 to #1/f
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3jcj, chain f (#1) with 4b48, chain A (#2), sequence alignment
score = 819.7
RMSD between 212 pruned atom pairs is 1.157 angstroms; (across all 283 pairs:
5.348)
> show #!1 models
> select #1/f
3879 atoms, 3930 bonds, 510 residues, 1 model selected
> show sel cartoons
> color #2 #ffa348 transparency 0
> select clear
> select #1/f
3879 atoms, 3930 bonds, 510 residues, 1 model selected
> save "/home/willy/projects/30s/if2/pdbs/3jcj-het.pdb .pdb" models #1
> selectedOnly true
> hide #!2 models
> hide #!1 models
> show #!3 models
> select ::name="MG"
197 atoms, 197 residues, 3 models selected
> show sel & #!3 atoms
> hide #!4 models
> hide #!3 models
> hide #4.1 models
> open 3v11
Summary of feedback from opening 3v11 fetched from pdb
---
warnings | Unable to fetch template for 'MG': might have incorrect bonds
Unable to fetch template for 'GNP': might have incorrect bonds
Unknown polymer entity '7' near line 8882
Unable to fetch template for '4SU': might have incorrect bonds
Unable to fetch template for 'H2U': might have incorrect bonds
Unable to fetch template for 'OMC': might have incorrect bonds
Unable to fetch template for '5MU': might have incorrect bonds
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
notes | Fetching compressed mmCIF 3v11 from
http://files.rcsb.org/download/3v11.cif
GET_TEMPLATE MG
GET_TEMPLATE GNP
GET_TEMPLATE 4SU
GET_TEMPLATE H2U
GET_TEMPLATE OMC
GET_TEMPLATE 5MU
3v11 title:
Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator
TRNA [more info...]
Chain information for 3v11 #5
---
Chain | Description | UniProt
A | Translation initiation factor 2 subunit γ | IF2G_SULSO
B | Translation initiation factor 2 subunit α | IF2A_SULSO
C | Translation initiation factor 2 subunit β | IF2B_SULSO
D | Initiator tRNA |
Non-standard residues in 3v11 #5
---
4SU — 4-thiouridine-5'-monophosphate
5MU — 5-methyluridine 5'-monophosphate
GNP — phosphoaminophosphonic acid-guanylate ester
H2U — 5,6-dihydrouridine-5'-monophosphate
MG — magnesium ion
OMC — O2'-methylycytidine-5'-monophosphate
> hide #!5 models
> show #!5 models
> hide #!5 models
> open 7unu
Summary of feedback from opening 7unu fetched from pdb
---
warnings | Unable to fetch template for 'MG': might have incorrect bonds
Unable to fetch template for 'FME': might have incorrect bonds
Unable to fetch template for 'GDP': might have incorrect bonds
Unable to fetch template for 'ZN': might have incorrect bonds
Unable to fetch template for '7MG': might have incorrect bonds
13 messages similar to the above omitted
notes | Fetching compressed mmCIF 7unu from
http://files.rcsb.org/download/7unu.cif
GET_TEMPLATE MG
GET_TEMPLATE FME
GET_TEMPLATE GDP
GET_TEMPLATE ZN
GET_TEMPLATE 7MG
GET_TEMPLATE 2MG
GET_TEMPLATE 5MC
GET_TEMPLATE 4OC
GET_TEMPLATE UR3
GET_TEMPLATE MA6
GET_TEMPLATE 4SU
GET_TEMPLATE 5MU
GET_TEMPLATE 1MG
GET_TEMPLATE 6MZ
GET_TEMPLATE OMG
GET_TEMPLATE OMC
GET_TEMPLATE 2MA
GET_TEMPLATE OMU
7unu title:
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact
IF2-GDP (composite structure I-B) [more info...]
Chain information for 7unu #6
---
Chain | Description | UniProt
1 | 50S ribosomal protein L29 | RL29_PSEAE
2 | 50S ribosomal protein L30 | RL30_PSEAE
3 | 50S ribosomal protein L31 | RL31_PSEAE
4 | 50S ribosomal protein L32 | RL32_PSEAE
5 | 50S ribosomal protein L33 | RL33_PSEAE
6 | 50S ribosomal protein L34 | RL34_PSEAE
7 | 50S ribosomal protein L35 | RL35_PSEAE
8 | 50S ribosomal protein L36 | RL36_PSEAE
A | 23S Ribosomal RNA |
B | 5S Ribosomal RNA |
C | 50S ribosomal protein L2 | RL2_PSEAE
D | 50S ribosomal protein L3 | RL3_PSEAE
E | 50S ribosomal protein L4 | RL4_PSEAE
F | 50S ribosomal protein L5 | RL5_PSEAE
G | 50S ribosomal protein L6 | RL6_PSEAE
H | 50S ribosomal protein L9 | RL9_PSEAE
I | 50S ribosomal protein L10 | RL10_PSEAE
J | 50S ribosomal protein L11 | RL11_PSEAE
L | 50S ribosomal protein L13 | RL13_PSEAE
M | 50S ribosomal protein L14 | RL14_PSEAE
N | 50S ribosomal protein L15 | RL15_PSEAE
O | 50S ribosomal protein L16 | RL16_PSEAE
P | 50S ribosomal protein L17 | RL17_PSEAE
Q | 50S ribosomal protein L18 | RL18_PSEAE
R | 50S ribosomal protein L19 | RL19_PSEAE
S | 50S ribosomal protein L20 | RL20_PSEAE
T | 50S ribosomal protein L21 | RL21_PSEAE
U | 50S ribosomal protein L22 | A0A1T1HVZ5_9PSED
V | 50S ribosomal protein L23 | RL23_PSEAE
W | 50S ribosomal protein L24 | RL24_PSEAE
X | 50S ribosomal protein L25 | RL25_PSEAE
Y | 50S ribosomal protein L27 | RL27_PSEAE
Z | 50S ribosomal protein L28 | RL28_PSEAE
a | 16S Ribosomal RNA |
b | 30S ribosomal protein S2 | RS2_PSEAE
c | 30S ribosomal protein S3 | RS3_PSEAE
d | 30S ribosomal protein S4 | RS4_PSEAE
e | 30S ribosomal protein S5 | RS5_PSEAE
f | 30S ribosomal protein S6 | RS6_PSEAE
g | 30S ribosomal protein S7 | RS7_PSEAE
h | 30S ribosomal protein S8 | RS8_PSEAE
i | 30S ribosomal protein S9 | RS9_PSEAE
j | 30S ribosomal protein S10 | RS10_PSEAE
k | 30S ribosomal protein S11 | RS11_PSEAE
l | 30S ribosomal protein S12 | RS12_PSEAE
m | 30S ribosomal protein S13 | RS13_PSEAE
n | 30S ribosomal protein S14 | RS14_PSEAE
o | 30S ribosomal protein S15 | RS15_PSEAE
p | 30S ribosomal protein S16 | RS16_PSEAE
q | 30S ribosomal protein S17 | RS17_PSEAE
r | 30S ribosomal protein S18 | RS18_PSEAE
s | 30S ribosomal protein S19 | RS19_PSEAE
t | 30S ribosomal protein S20 | RS20_PSEAE
u | 30S ribosomal protein S21 | RS21_PSEAE
v | P-site initiator tRNA |
w | mRNA |
x | Translation initiation factor IF-2 | IF2_PSEAE
Non-standard residues in 7unu #6
---
1MG — 1N-methylguanosine-5'-monophosphate
2MA — 2-methyladenosine-5'-monophosphate
2MG — 2N-methylguanosine-5'-monophosphate
4OC — 4N,O2'-methylcytidine-5'-monophosphate
4SU — 4-thiouridine-5'-monophosphate
5MC — 5-methylcytidine-5'-monophosphate
5MU — 5-methyluridine 5'-monophosphate
6MZ — N6-methyladenosine-5'-monophosphate
7MG — 7N-methyl-8-hydroguanosine-5'-monophosphate
FME — N-formylmethionine
GDP — guanosine-5'-diphosphate
MA6 — 6N-dimethyladenosine-5'-monophoshate
MG — magnesium ion
OMC — O2'-methylycytidine-5'-monophosphate
OMG — O2'-methylguanosine-5'-monophosphate
OMU — O2'-methyluridine 5'-monophosphate
UR3 — 3-methyluridine-5'-monophoshate
ZN — zinc ion
> hide #!6 models
> show #!6 models
> select add #6
149456 atoms, 160955 bonds, 5377 pseudobonds, 12101 residues, 7 models
selected
> select subtract #6
197 atoms, 197 residues, 3 models selected
> view clip false
> hide #!6 atoms
> show #!6 cartoons
> select #6/x:342-835
3235 atoms, 3274 bonds, 3 pseudobonds, 472 residues, 2 models selected
> select ~sel
363967 atoms, 392190 bonds, 11351 pseudobonds, 28983 residues, 20 models
selected
> hide sel & #!6 cartoons
> select :MG
805 atoms, 805 residues, 5 models selected
> show sel & #!6 atoms
> select :GDP
28 atoms, 30 bonds, 1 residue, 1 model selected
> show sel atoms
> hide #!6 models
> view #6 clip false
> open 7unr
Summary of feedback from opening 7unr fetched from pdb
---
warnings | Unable to fetch template for 'MG': might have incorrect bonds
Unable to fetch template for 'FME': might have incorrect bonds
Unable to fetch template for 'GDP': might have incorrect bonds
Unable to fetch template for 'ZN': might have incorrect bonds
Unable to fetch template for '7MG': might have incorrect bonds
13 messages similar to the above omitted
notes | Fetching compressed mmCIF 7unr from
http://files.rcsb.org/download/7unr.cif
GET_TEMPLATE MG
GET_TEMPLATE FME
GET_TEMPLATE GDP
GET_TEMPLATE ZN
GET_TEMPLATE 7MG
GET_TEMPLATE 2MG
GET_TEMPLATE 5MC
GET_TEMPLATE 4OC
GET_TEMPLATE UR3
GET_TEMPLATE MA6
GET_TEMPLATE 4SU
GET_TEMPLATE 5MU
GET_TEMPLATE 1MG
GET_TEMPLATE 6MZ
GET_TEMPLATE OMG
GET_TEMPLATE OMC
GET_TEMPLATE 2MA
GET_TEMPLATE OMU
7unr title:
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact
IF2-GDP (composite structure I-A) [more info...]
Chain information for 7unr #7
---
Chain | Description | UniProt
1 | 50S ribosomal protein L29 | RL29_PSEAE
2 | 50S ribosomal protein L30 | RL30_PSEAE
3 | 50S ribosomal protein L31 | RL31_PSEAE
4 | 50S ribosomal protein L32 | RL32_PSEAE
5 | 50S ribosomal protein L33 | RL33_PSEAE
6 | 50S ribosomal protein L34 | RL34_PSEAE
7 | 50S ribosomal protein L35 | RL35_PSEAE
8 | 50S ribosomal protein L36 | RL36_PSEAE
A | 23S Ribosomal RNA |
B | 5S Ribosomal RNA |
C | 50S ribosomal protein L2 | RL2_PSEAE
D | 50S ribosomal protein L3 | RL3_PSEAE
E | 50S ribosomal protein L4 | RL4_PSEAE
F | 50S ribosomal protein L5 | RL5_PSEAE
G | 50S ribosomal protein L6 | RL6_PSEAE
H | 50S ribosomal protein L9 | RL9_PSEAE
I | 50S ribosomal protein L10 | RL10_PSEAE
J | 50S ribosomal protein L11 | RL11_PSEAE
L | 50S ribosomal protein L13 | RL13_PSEAE
M | 50S ribosomal protein L14 | RL14_PSEAE
N | 50S ribosomal protein L15 | RL15_PSEAE
O | 50S ribosomal protein L16 | RL16_PSEAE
P | 50S ribosomal protein L17 | RL17_PSEAE
Q | 50S ribosomal protein L18 | RL18_PSEAE
R | 50S ribosomal protein L19 | RL19_PSEAE
S | 50S ribosomal protein L20 | RL20_PSEAE
T | 50S ribosomal protein L21 | RL21_PSEAE
U | 50S ribosomal protein L22 | A0A1T1HVZ5_9PSED
V | 50S ribosomal protein L23 | RL23_PSEAE
W | 50S ribosomal protein L24 | RL24_PSEAE
X | 50S ribosomal protein L25 | RL25_PSEAE
Y | 50S ribosomal protein L27 | RL27_PSEAE
Z | 50S ribosomal protein L28 | RL28_PSEAE
a | 16S Ribosomal RNA |
b | 30S ribosomal protein S2 | RS2_PSEAE
c | 30S ribosomal protein S3 | RS3_PSEAE
d | 30S ribosomal protein S4 | RS4_PSEAE
e | 30S ribosomal protein S5 | RS5_PSEAE
f | 30S ribosomal protein S6 | RS6_PSEAE
g | 30S ribosomal protein S7 | RS7_PSEAE
h | 30S ribosomal protein S8 | RS8_PSEAE
i | 30S ribosomal protein S9 | RS9_PSEAE
j | 30S ribosomal protein S10 | RS10_PSEAE
k | 30S ribosomal protein S11 | RS11_PSEAE
l | 30S ribosomal protein S12 | RS12_PSEAE
m | 30S ribosomal protein S13 | RS13_PSEAE
n | 30S ribosomal protein S14 | RS14_PSEAE
o | 30S ribosomal protein S15 | RS15_PSEAE
p | 30S ribosomal protein S16 | RS16_PSEAE
q | 30S ribosomal protein S17 | RS17_PSEAE
r | 30S ribosomal protein S18 | RS18_PSEAE
s | 30S ribosomal protein S19 | RS19_PSEAE
t | 30S ribosomal protein S20 | RS20_PSEAE
u | 30S ribosomal protein S21 | RS21_PSEAE
v | P-site initiator tRNA |
w | mRNA |
x | Translation initiation factor IF-2 | IF2_PSEAE
Non-standard residues in 7unr #7
---
1MG — 1N-methylguanosine-5'-monophosphate
2MA — 2-methyladenosine-5'-monophosphate
2MG — 2N-methylguanosine-5'-monophosphate
4OC — 4N,O2'-methylcytidine-5'-monophosphate
4SU — 4-thiouridine-5'-monophosphate
5MC — 5-methylcytidine-5'-monophosphate
5MU — 5-methyluridine 5'-monophosphate
6MZ — N6-methyladenosine-5'-monophosphate
7MG — 7N-methyl-8-hydroguanosine-5'-monophosphate
FME — N-formylmethionine
GDP — guanosine-5'-diphosphate
MA6 — 6N-dimethyladenosine-5'-monophoshate
MG — magnesium ion
OMC — O2'-methylycytidine-5'-monophosphate
OMG — O2'-methylguanosine-5'-monophosphate
OMU — O2'-methyluridine 5'-monophosphate
UR3 — 3-methyluridine-5'-monophoshate
ZN — zinc ion
> hide #!7 atoms
> select #7/x:337-835
3500 atoms, 3541 bonds, 2 pseudobonds, 486 residues, 2 models selected
> show sel cartoons
> select :MG
1435 atoms, 1435 residues, 6 models selected
> show sel & #!7 atoms
> select :GDP
56 atoms, 60 bonds, 2 residues, 2 models selected
> show sel & #!7 atoms
> select ::name="HOH"
1264 atoms, 1264 residues, 5 models selected
> show sel & #!7 atoms
> hide #!7 models
> show #!6 models
> select ::name="HOH"
1264 atoms, 1264 residues, 5 models selected
> show sel & #!6 atoms
> hide #!6 models
> show #!7 models
> select #7/x:337-835
3500 atoms, 3541 bonds, 2 pseudobonds, 486 residues, 2 models selected
> save /home/willy/projects/30s/if2/pdbs/7unu.fasta
No alignments open!
> save /home/willy/projects/30s/if2/pdbs/7unu.pdb selectedOnly true
> hide #!7 models
> show #!6 models
> hide #!6 models
> open /home/willy/projects/30s/if2/simulations/3jcj-f.pdb
> /home/willy/projects/30s/if2/simulations/7unu_x.pdb
Summary of feedback from opening
/home/willy/projects/30s/if2/simulations/3jcj-f.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ASP 1 21
LYS 1 23 1 3
Start residue of secondary structure not found: HELIX 2 2 ASP 1 24 ILE 1 32 1
9
Start residue of secondary structure not found: HELIX 3 3 PRO 1 40 GLY 1 45 1
6
Start residue of secondary structure not found: HELIX 4 4 ARG 1 47 LEU 1 64 1
18
Start residue of secondary structure not found: HELIX 5 5 ALA 2 25 ARG 2 33 1
9
364 messages similar to the above omitted
Cannot find LINK/SSBOND residue A (76 )
Cannot find LINK/SSBOND residue G (818 )
Cannot find LINK/SSBOND residue HOH (3392 )
Cannot find LINK/SSBOND residue A (608 )
Cannot find LINK/SSBOND residue MG (1621 )
641 messages similar to the above omitted
Chain information for 3jcj-f.pdb #8
---
Chain | Description
f | No description available
Chain information for 7unu_x.pdb #9
---
Chain | Description
x | No description available
> ui tool show "Show Sequence Viewer"
[Repeated 1 time(s)]
> sequence chain #8/f
Alignment identifier is 8/f
> sequence chain #9/x
Alignment identifier is 9/x
> mmaker #9:741-835 to #8:790-884
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3jcj-f.pdb, chain f (#8) with 7unu_x.pdb, chain x (#9), sequence
alignment score = 368.8
RMSD between 84 pruned atom pairs is 0.923 angstroms; (across all 95 pairs:
1.518)
> morph #8,9 wrap true 60 frames
Expected a keyword
> morph #8,9 wrap true frames 60
Computed 121 frame morph #10
> coordset #10 1,121
> show #!9 models
> show #8 models
> hide #!10 models
> hide #10.1 models
> hide #4.1 models
> show #!10 models
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.
GLError(
err = 1282,
description = b'invalid operation',
baseOperation = glDrawBuffer,
cArguments = (GL_BACK,)
)
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/updateloop.py", line 73, in draw_new_frame
view.draw(check_for_changes = False)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 165, in draw
self._draw_scene(camera, drawings)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 203, in _draw_scene
shadow, multishadow = self._compute_shadowmaps(opaque_drawings,
transparent_drawings, camera)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 594, in _compute_shadowmaps
shadow_enabled = r.shadow.use_shadow_map(camera, shadow_drawings)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1430, in use_shadow_map
shadow_map = self._finish_rendering_shadowmap() # Depth texture
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1460, in
_finish_rendering_shadowmap
fb = r.pop_framebuffer()
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 714, in pop_framebuffer
fb.activate()
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2261, in activate
GL.glDrawBuffer(self._draw_buffer)
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1282,
description = b'invalid operation',
baseOperation = glDrawBuffer,
cArguments = (GL_BACK,)
)
OpenGL version: 3.3.0 NVIDIA 510.73.05
OpenGL renderer: Quadro P2200/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: xcb
XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: HP
Model: HP Z4 G4 Workstation
OS: Ubuntu 22.04 jammy
Architecture: 64bit ELF
Virtual Machine: none
CPU: 8 Intel(R) Xeon(R) W-2223 CPU @ 3.60GHz
Cache Size: 8448 KB
Memory:
total used free shared buff/cache available
Mem: 15Gi 11Gi 348Mi 509Mi 3.2Gi 2.7Gi
Swap: 2.0Gi 595Mi 1.4Gi
Graphics:
21:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP106GL [Quadro P2200] [10de:1c31] (rev a1)
Subsystem: Hewlett-Packard Company GP106GL [Quadro P2200] [103c:131b]
Kernel driver in use: nvidia
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.5.dev202205140117
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-LinuxSupport: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.19.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
distro: 1.6.0
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 22.3.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.2.0
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (1)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → glDrawBuffer: invalid operation |
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