Opened 3 years ago

Closed 3 years ago

#7644 closed defect (can't reproduce)

Crash drawing side view

Reported by: chimerax-bug-report@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19044
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation

Current thread 0x00005b14 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 235 in swap_buffers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 496 in swap_buffers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py", line 179 in draw
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\sideview\tool.py", line 276 in render
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\sideview\tool.py", line 112 in _redraw
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line 134 in invoke
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line 217 in _activate
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line 186 in activate
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line 354 in activate_trigger
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py", line 89 in draw_new_frame
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py", line 139 in _redraw_timer_callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:\Users\gunna\Downloads\motivelist_NAPs.em format motl

Summary of feedback from opening C:\Users\gunna\Downloads\motivelist_NAPs.em  
---  
note | Preset expands to these ChimeraX commands:

    
    
    set bgColor black  
    lighting depthCue false  
    camera ortho

  
  
  
Opened Particle list motivelist_NAPs.em with 651 particles.  

> ui mousemode right select

Drag select of axes, 651 atoms  

> artiax fit sphere

Created sphere with center: (422.72, 301.89, 91.13) and radius: 228.66.  

> hide #!1.3.1 models

> artiax fit line

Created a Curved line through 651 particles.  

Select exactly one particle as a starting point.  

> hide #!1.3.2 models

> artiax fit surface

Created a Surface through 651 particles with normal (-0.15, 0.10, 0.98).  

> artiax info #1.2.1

Particle List #1.2.1 - motivelist_NAPs.em  
containing 651 particles  
of data type: ArtiatomiParticleData  
Displayed particle coordinates scaled by factor: 1  
Displayed particle offsets scaled by factor: 1  
Particles have 20 unique attributes:  

  1. class_number
    * Aliases: row_20
    * Is position parameter: 
    * min: 1.00 | max 1.00 | mean 1.00 | std 0.00 | var 0.00
  2. cross_correlation
    * Aliases: xcorr, row_1
    * Is position parameter: 
    * min: 0.12 | max 0.33 | mean 0.21 | std 0.04 | var 0.00
  3. legacy_num
    * Aliases: row_4
    * Is position parameter: 
    * min: 1.00 | max 772.00 | mean 375.64 | std 220.86 | var 48778.54
  4. legacy_shift_x
    * Aliases: row_14
    * Is position parameter: 
    * min: -6.44 | max 6.76 | mean -0.61 | std 2.67 | var 7.14
  5. legacy_shift_y
    * Aliases: row_15
    * Is position parameter: 
    * min: -6.52 | max 6.43 | mean -0.74 | std 2.76 | var 7.63
  6. legacy_shift_z
    * Aliases: row_16
    * Is position parameter: 
    * min: -6.65 | max 6.95 | mean 0.32 | std 2.97 | var 8.82
  7. legacy_x
    * Aliases: row_2
    * Is position parameter: 
    * min: 140.00 | max 721.00 | mean 434.44 | std 187.79 | var 35264.70
  8. legacy_y
    * Aliases: row_3
    * Is position parameter: 
    * min: 71.00 | max 518.00 | mean 322.38 | std 121.65 | var 14797.68
  9. part_number
    * Aliases: row_6
    * Is position parameter: 
    * min: 1.00 | max 772.00 | mean 375.64 | std 220.86 | var 48778.54
  10. phi
    * Aliases: row_17
    * Is position parameter: ang_1
    * min: -125.84 | max 136.21 | mean -6.00 | std 91.46 | var 8364.40
  11. position_x
    * Aliases: row_8
    * Is position parameter: pos_x
    * min: 139.00 | max 720.00 | mean 433.90 | std 187.77 | var 35256.21
  12. position_y
    * Aliases: row_9
    * Is position parameter: pos_y
    * min: 70.00 | max 516.00 | mean 320.83 | std 121.61 | var 14789.00
  13. position_z
    * Aliases: row_10
    * Is position parameter: pos_z
    * min: 25.00 | max 152.00 | mean 86.57 | std 41.64 | var 1734.24
  14. psi
    * Aliases: row_18
    * Is position parameter: ang_3
    * min: -171.84 | max 167.00 | mean 24.77 | std 98.64 | var 9730.78
  15. shift_x
    * Aliases: row_11
    * Is position parameter: shift_x
    * min: 0.00 | max 0.00 | mean 0.00 | std 0.00 | var 0.00
  16. shift_y
    * Aliases: row_12
    * Is position parameter: shift_y
    * min: 0.00 | max 0.00 | mean 0.00 | std 0.00 | var 0.00
  17. shift_z
    * Aliases: row_13
    * Is position parameter: shift_z
    * min: 0.00 | max 0.00 | mean 0.00 | std 0.00 | var 0.00
  18. the
    * Aliases: row_19
    * Is position parameter: ang_2
    * min: 44.97 | max 139.42 | mean 91.35 | std 15.12 | var 228.48
  19. tomo_number
    * Aliases: row_5
    * Is position parameter: 
    * min: 1.00 | max 772.00 | mean 375.64 | std 220.86 | var 48778.54
  20. wedge_number
    * Aliases: row_7
    * Is position parameter: 
    * min: 0.00 | max 0.00 | mean 0.00 | std 0.00 | var 0.00

  

> hide #!1.3.3 models

> artiax boundary

Created a boundary with 651 vertices.  

> ui mousemode right "mark point"

> marker #1.2.1.3 position 364.4,315.2,225.1 color #f0a3ff radius 4

> marker #1.2.1.3 position 604,176.1,131.4 color #f0a3ff radius 4

> ui mousemode right select

Drag select of axes, 601 of 653 instances, boundary, 778 of 840 triangles, 607
atoms  

> select clear

> artiax select inside surface

dist to end: 122.0  
dist to tri: -0.0  
old start [383. 366. 31.]  
new start: [383.0, 366.0, 31.001]  
dist to end: 121.999  
dist to tri: 0.9209213852882385  
old start [383.0, 366.0, 31.001]  
new start: [383.0, 366.0, 143.3534880837798]  
pos: [383. 366. 31.]:  
intersepts: 2  
dist to end: 122.0  
dist to tri: 0.0  
old start [386. 338. 31.]  
new start: [386.0, 338.0, 31.001]  
dist to end: 121.999  
dist to tri: 0.9386373162269592  
old start [386.0, 338.0, 31.001]  
new start: [386.0, 338.0, 145.5148139423728]  
pos: [386. 338. 31.]:  
intersepts: 2  
dist to end: 122.0  
dist to tri: -0.0  
old start [353. 324. 31.]  
new start: [353.0, 324.0, 31.001]  
dist to end: 121.999  
dist to tri: 0.9362462162971497  
old start [353.0, 324.0, 31.001]  
new start: [353.0, 324.0, 145.22310214203597]  
pos: [353. 324. 31.]:  
intersepts: 2  
dist to end: 124.0  
dist to tri: 0.0  
old start [325. 363. 29.]  
new start: [325.0, 363.0, 29.001]  
dist to end: 123.999  
dist to tri: 0.9053547978401184  
old start [325.0, 363.0, 29.001]  
new start: [325.0, 363.0, 141.26508957737684]  
pos: [325. 363. 29.]:  
intersepts: 2  
dist to end: 126.0  
dist to tri: 0.0  
old start [222. 397. 27.]  
new start: [222.0, 397.0, 27.001]  
dist to end: 125.999  
dist to tri: 0.7437604069709778  
old start [222.0, 397.0, 27.001]  
new start: [222.0, 397.0, 120.71506751793623]  
pos: [222. 397. 27.]:  
intersepts: 2  
dist to end: 126.0  
dist to tri: -0.0  
old start [314. 430. 27.]  
new start: [314.0, 430.0, 27.001]  
dist to end: 125.999  
dist to tri: 0.8188270926475525  
old start [314.0, 430.0, 27.001]  
new start: [314.0, 430.0, 130.17339484649895]  
pos: [314. 430. 27.]:  
intersepts: 2  
dist to end: 125.0  
dist to tri: 0.0  
old start [333. 472. 28.]  
new start: [333.0, 472.0, 28.001]  
dist to end: 124.999  
dist to tri: 0.4095388650894165  
old start [333.0, 472.0, 28.001]  
new start: [333.0, 472.0, 79.19394859731197]  
pos: [333. 472. 28.]:  
intersepts: 2  
dist to end: 127.0  
dist to tri: -0.0  
old start [251. 429. 26.]  
new start: [251.0, 429.0, 26.001]  
dist to end: 126.999  
dist to tri: 0.7156980037689209  
old start [251.0, 429.0, 26.001]  
new start: [251.0, 429.0, 116.89493078064919]  
pos: [251. 429. 26.]:  
intersepts: 2  
dist to end: 126.0  
dist to tri: 0.0  
old start [268. 431. 27.]  
new start: [268.0, 431.0, 27.001]  
dist to end: 125.999  
dist to tri: 0.7491564750671387  
old start [268.0, 431.0, 27.001]  
new start: [268.0, 431.0, 121.39496670198442]  
pos: [268. 431. 27.]:  
intersepts: 2  
dist to end: 128.0  
dist to tri: 0.0  
old start [257. 411. 25.]  
new start: [257.0, 411.0, 25.001]  
dist to end: 127.999  
dist to tri: 0.8002636432647705  
old start [257.0, 411.0, 25.001]  
new start: [257.0, 411.0, 127.43494607424736]  
pos: [257. 411. 25.]:  
intersepts: 2  
dist to end: 125.0  
dist to tri: 0.0  
old start [287. 432. 28.]  
new start: [287.0, 432.0, 28.001]  
dist to end: 124.999  
dist to tri: 0.7741103172302246  
old start [287.0, 432.0, 28.001]  
new start: [287.0, 432.0, 124.76501554346085]  
pos: [287. 432. 28.]:  
intersepts: 2  
dist to end: 124.0  
dist to tri: 0.3059496283531189  
old start [310. 477. 29.]  
new start: [310.0, 477.0, 66.93875391578675]  
pos: [310. 477. 29.]:  
intersepts: 1  
dist to end: 126.0  
dist to tri: -0.0  
old start [296. 451. 27.]  
new start: [296.0, 451.0, 27.001]  
dist to end: 125.999  
dist to tri: 0.5830560326576233  
old start [296.0, 451.0, 27.001]  
new start: [296.0, 451.0, 100.46647705882788]  
pos: [296. 451. 27.]:  
intersepts: 2  
dist to end: 126.0  
dist to tri: 0.0  
old start [241. 406. 27.]  
new start: [241.0, 406.0, 27.001]  
dist to end: 125.999  
dist to tri: 0.7675991058349609  
old start [241.0, 406.0, 27.001]  
new start: [241.0, 406.0, 123.71871973609925]  
pos: [241. 406. 27.]:  
intersepts: 2  
dist to end: 123.0  
dist to tri: 0.9238826632499695  
old start [337. 337. 30.]  
new start: [337.0, 337.0, 143.63856757974625]  
pos: [337. 337. 30.]:  
intersepts: 1  
dist to end: 124.0  
dist to tri: -0.0  
old start [329. 330. 29.]  
new start: [329.0, 330.0, 29.001]  
dist to end: 123.999  
dist to tri: 0.9260464310646057  
old start [329.0, 330.0, 29.001]  
new start: [329.0, 330.0, 143.83083140558003]  
pos: [329. 330. 29.]:  
intersepts: 2  
dist to end: 122.0  
dist to tri: -0.0  
old start [371. 353. 31.]  
new start: [371.0, 353.0, 31.001]  
dist to end: 121.999  
dist to tri: 0.9247797727584839  
old start [371.0, 353.0, 31.001]  
new start: [371.0, 353.0, 143.82420749676228]  
pos: [371. 353. 31.]:  
intersepts: 2  
dist to end: 122.0  
dist to tri: -0.0  
old start [378. 345. 31.]  
new start: [378.0, 345.0, 31.001]  
dist to end: 121.999  
dist to tri: 0.9318444132804871  
old start [378.0, 345.0, 31.001]  
new start: [378.0, 345.0, 144.68608657580614]  
pos: [378. 345. 31.]:  
intersepts: 2  
dist to end: 121.0  
dist to tri: 0.937254011631012  
old start [376. 334. 32.]  
new start: [376.0, 334.0, 145.40873540735245]  
pos: [376. 334. 32.]:  
intersepts: 1  
dist to end: 122.0  
dist to tri: -0.0  
old start [368. 326. 31.]  
new start: [368.0, 326.0, 31.001]  
dist to end: 121.999  
dist to tri: 0.9399415254592896  
old start [368.0, 326.0, 31.001]  
new start: [368.0, 326.0, 145.67392616450786]  
pos: [368. 326. 31.]:  
intersepts: 2  
dist to end: 122.0  
dist to tri: 0.0  
old start [396. 368. 31.]  
new start: [396.0, 368.0, 31.001]  
dist to end: 121.999  
dist to tri: 0.9239646196365356  
old start [396.0, 368.0, 31.001]  
new start: [396.0, 368.0, 143.7247596310377]  
pos: [396. 368. 31.]:  
intersepts: 2  
dist to end: 122.0  
dist to tri: 0.9209763407707214  
old start [352. 349. 31.]  
new start: [352.0, 349.0, 143.36011357402802]  
pos: [352. 349. 31.]:  
intersepts: 1  
dist to end: 123.0  
dist to tri: 0.0  
old start [360. 356. 30.]  
new start: [360.0, 356.0, 30.001]  
dist to end: 122.999  
dist to tri: 0.9200550317764282  
old start [360.0, 356.0, 30.001]  
new start: [360.0, 356.0, 143.16784885346888]  
pos: [360. 356. 30.]:  
intersepts: 2  
dist to end: 123.0  
dist to tri: 0.0  
old start [340. 359. 30.]  
new start: [340.0, 359.0, 30.001]  
dist to end: 122.999  
dist to tri: 0.9118081331253052  
old start [340.0, 359.0, 30.001]  
new start: [340.0, 359.0, 142.1534885662794]  
pos: [340. 359. 30.]:  
intersepts: 2  
dist to end: 124.0  
dist to tri: 0.0  
old start [331. 354. 29.]  
new start: [331.0, 354.0, 29.001]  
dist to end: 123.999  
dist to tri: 0.9125728011131287  
old start [331.0, 354.0, 29.001]  
new start: [331.0, 354.0, 142.16011476522684]  
pos: [331. 354. 29.]:  
intersepts: 2  
dist to end: 124.0  
dist to tri: -0.0  
old start [339. 349. 29.]  
new start: [339.0, 349.0, 29.001]  
dist to end: 123.999  
dist to tri: 0.9180799126625061  
old start [339.0, 349.0, 29.001]  
new start: [339.0, 349.0, 142.8429910902381]  
pos: [339. 349. 29.]:  
intersepts: 2  
dist to end: 122.0  
dist to tri: 0.9368988275527954  
old start [322. 306. 31.]  
new start: [322.0, 306.0, 145.30265696144104]  
pos: [322. 306. 31.]:  
intersepts: 1  
dist to end: 124.0  
dist to tri: -0.0  
old start [324. 295. 29.]  
new start: [324.0, 295.0, 29.001]  
dist to end: 123.999  
dist to tri: 0.9450271725654602  
old start [324.0, 295.0, 29.001]  
new start: [324.0, 295.0, 146.1844243709445]  
pos: [324. 295. 29.]:  
intersepts: 2  
dist to end: 121.0  
dist to tri: -0.0  
old start [334. 295. 32.]  
new start: [334.0, 295.0, 32.001]  
dist to end: 120.999  
dist to tri: 0.9469517469406128  
old start [334.0, 295.0, 32.001]  
new start: [334.0, 295.0, 146.5822144280672]  
pos: [334. 295. 32.]:  
intersepts: 2  
dist to end: 122.0  
dist to tri: 0.9506577849388123  
old start [305. 271. 31.]  
new start: [305.0, 271.0, 146.9812497625351]  
pos: [305. 271. 31.]:  
intersepts: 1  
dist to end: 122.0  
dist to tri: -0.0  
old start [314. 261. 31.]  
new start: [314.0, 261.0, 31.001]  
dist to end: 121.999  
dist to tri: 0.9568232893943787  
old start [314.0, 261.0, 31.001]  
new start: [314.0, 261.0, 147.7334844828248]  
pos: [314. 261. 31.]:  
intersepts: 2  
dist to end: 120.0  
dist to tri: 0.953450083732605  
old start [306. 255. 33.]  
new start: [306.0, 255.0, 147.4150100479126]  
pos: [306. 255. 33.]:  
intersepts: 1  
dist to end: 123.0  
dist to tri: 0.0  
old start [299. 277. 30.]  
new start: [299.0, 277.0, 30.001]  
dist to end: 122.999  
dist to tri: 0.9448662400245667  
old start [299.0, 277.0, 30.001]  
new start: [299.0, 277.0, 146.21960265678166]  
pos: [299. 277. 30.]:  
intersepts: 2  
dist to end: 124.0  
dist to tri: -0.0  
old start [313. 289. 29.]  
new start: [313.0, 289.0, 29.001]  
dist to end: 123.999  
dist to tri: 0.9437318444252014  
old start [313.0, 289.0, 29.001]  
new start: [313.0, 289.0, 146.02380497688054]  
pos: [313. 289. 29.]:  
intersepts: 2  
dist to end: 123.0  
dist to tri: 0.939123809337616  
old start [303. 289. 30.]  
new start: [303.0, 289.0, 145.51322854852677]  
pos: [303. 289. 30.]:  
intersepts: 1  
dist to end: 124.0  
dist to tri: 0.0  
old start [301. 302. 29.]  
new start: [301.0, 302.0, 29.001]  
dist to end: 123.999  
dist to tri: 0.9308351278305054  
old start [301.0, 302.0, 29.001]  
new start: [301.0, 302.0, 144.42462501585484]  
pos: [301. 302. 29.]:  
intersepts: 2  
dist to end: 123.0  
dist to tri: 0.9301866292953491  
old start [310. 309. 30.]  
new start: [310.0, 309.0, 144.41395540332795]  
pos: [310. 309. 30.]:  
intersepts: 1  
dist to end: 123.0  
dist to tri: 0.9212701916694641  
old start [308. 323. 30.]  
new start: [308.0, 323.0, 143.3172335753441]  
pos: [308. 323. 30.]:  
intersepts: 1  
dist to end: 123.0  
dist to tri: 0.9280330538749695  
old start [315. 318. 30.]  
new start: [315.0, 318.0, 144.14906562662125]  
pos: [315. 318. 30.]:  
intersepts: 1  
dist to end: 125.0  
dist to tri: -0.0  
old start [314. 336. 28.]  
new start: [314.0, 336.0, 28.001]  
dist to end: 124.999  
dist to tri: 0.9183639883995056  
old start [314.0, 336.0, 28.001]  
new start: [314.0, 336.0, 142.7965801859498]  
pos: [314. 336. 28.]:  
intersepts: 2  
dist to end: 123.0  
dist to tri: -0.0  
old start [332. 310. 30.]  
new start: [332.0, 310.0, 30.001]  
dist to end: 122.999  
dist to tri: 0.9382737874984741  
old start [332.0, 310.0, 30.001]  
new start: [332.0, 310.0, 145.40873758852482]  
pos: [332. 310. 30.]:  
intersepts: 2  
dist to end: 121.0  
dist to tri: 0.9311172962188721  
old start [339. 324. 32.]  
new start: [339.0, 324.0, 144.66619284248353]  
pos: [339. 324. 32.]:  
intersepts: 1  
dist to end: 123.0  
dist to tri: 0.9147734045982361  
old start [318. 342. 30.]  
new start: [318.0, 342.0, 142.51812876558304]  
pos: [318. 342. 30.]:  
intersepts: 1  
dist to end: 121.0  
dist to tri: 0.9292543530464172  
old start [348. 332. 32.]  
new start: [348.0, 332.0, 144.4407767186165]  
pos: [348. 332. 32.]:  
intersepts: 1  
dist to end: 121.0  
dist to tri: 0.9236108064651489  
old start [351. 343. 32.]  
new start: [351.0, 343.0, 143.75790758228302]  
pos: [351. 343. 32.]:  
intersepts: 1  
dist to end: 122.0  
dist to tri: 0.9500818848609924  
old start [317. 280. 31.]  
new start: [317.0, 280.0, 146.91098995304108]  
pos: [317. 280. 31.]:  
intersepts: 1  
dist to end: 124.0  
dist to tri: 0.716045081615448  
old start [213. 396. 29.]  
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old start [513. 440. 136.]  
new start: [513.0, 440.0, 140.9066603908539]  
pos: [513. 440. 136.]:  
intersepts: 1  
dist to end: 17.0  
dist to tri: -0.0  
old start [486. 462. 136.]  
new start: [486.0, 462.0, 136.001]  
pos: [486. 462. 136.]:  
intersepts: 1  
dist to end: 17.0  
dist to tri: -0.0  
old start [495. 462. 136.]  
new start: [495.0, 462.0, 136.001]  
pos: [495. 462. 136.]:  
intersepts: 1  
dist to end: 20.0  
dist to tri: 0.2542452812194824  
old start [488. 452. 133.]  
new start: [488.0, 452.0, 138.08590562438965]  
pos: [488. 452. 133.]:  
intersepts: 1  
dist to end: 18.0  
dist to tri: -0.0  
old start [271. 406. 135.]  
new start: [271.0, 406.0, 135.001]  
pos: [271. 406. 135.]:  
intersepts: 1  
dist to end: 17.0  
dist to tri: -0.0  
old start [299. 421. 136.]  
new start: [299.0, 421.0, 136.001]  
pos: [299. 421. 136.]:  
intersepts: 1  
dist to end: 22.0  
dist to tri: 0.0  
old start [525. 247. 131.]  
new start: [525.0, 247.0, 131.001]  
pos: [525. 247. 131.]:  
intersepts: 1  
pos: [604.00832963 176.14028179 131.44656565]:  
intersepts: 0  

> artiax flip x

Drag select of axes, 2 of 653 instances, 2 atoms  

> artiax flip x

> artiax flip y

> artiax flip z

Drag select of axes, 1 of 653 instances, 1 atoms  

> artiax flip x

> artiax flip y

> artiax flip z

> artiax flip y

> ui mousemode right "mark maximum"

> ui mousemode right "mark plane"

> ui mousemode right "mark surface"

> ui mousemode right "mark center"

> ui mousemode right "mark point"

> artiax flip x

> artiax flip y

> artiax flip z

> marker #1.2.1.3 position 584.3,296.7,260.1 color #f0a3ff radius 4

> marker #1.2.1.3 position 600.6,261,204.6 color #f0a3ff radius 4

> artiax view xy

> artiax view xz

> artiax view yz

> hide #!1.2.1 models

> open "C:\Users\gunna\PycharmProjects\test data\curved_line.em" format motl

Opened Particle list curved_line.em with 7 particles.  

> hide #!1.3.4 models

> artiax view xy

> ui mousemode right select

Drag select of axes, 5 of 7 instances, 6 atoms  

> select clear

Drag select of axes, 7 atoms  

> artiax fit line

Created a Curved line through 7 particles.  

> artiax geomodel color #1.3.5 94,64,100,100

> artiax geomodel color #1.3.5 30,0,36,100

> artiax geomodel color #1.3.5 100,80,60,100

> hide #!1.2.2 models

> hide #!1.3.5 models

> ui mousemode right "mark point"

> marker #1.2.2.3 position -111.4,-42.32,209.2 color #0075dc radius 4

> marker #1.2.3.3 position -118,-39.54,205.4 color #993f00 radius 4

> marker #1.2.3.3 position -87.85,-57.25,189.2 color #993f00 radius 4

> marker #1.2.3.3 position -148.8,-4.288,268.4 color #993f00 radius 4

> marker #1.2.3.3 position -167.6,-25.8,268.6 color #993f00 radius 4

> marker #1.2.3.3 position -166.7,-56.56,228.1 color #993f00 radius 4

> marker #1.2.3.3 position -150,-86.9,186.8 color #993f00 radius 4

> marker #1.2.3.3 position -216.2,-67.42,212.3 color #993f00 radius 4

> marker #1.2.3.3 position -228.4,-55.54,245.9 color #993f00 radius 4

> marker #1.2.3.3 position -107.2,-55.56,271.4 color #993f00 radius 4

> marker #1.2.3.3 position -172.4,-118.4,194.8 color #993f00 radius 4

> ui mousemode right select

Drag select of axes, 1 of 10 instances  
Drag select of axes, 10 atoms  

> artiax view xy

> artiax fit surface

Created a Surface through 10 particles with normal (0.17, -0.74, 0.65).  

> hide #!1.3.6 models

> artiax fit line

Created a Curved line through 10 particles.  

> hide #!1.2.3 models

> hide #!1.3.7 models

> show #!1.3.7 models

> hide #!1.2.4 models

> lighting flat

> lighting full

> lighting soft

> lighting simple

> lighting full

> lighting simple

> lighting soft

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> graphics silhouettes false

> graphics silhouettes true

> ui tool show "Side View"

> view

> view orient

> lighting simple

> volume appearance airways

No volumes specified  

> ui mousemode right "move planes"

> volume appearance chest

No volumes specified  

> volume appearance airways

No volumes specified  

> volume appearance brain

No volumes specified  

> volume appearance brain

No volumes specified  

> undo

> hide #!1.2.6 models

> show #!1.2.6 models

> hide #!1.2.6 models

> show #!1.2.6 models

> artiax geomodel color #1.3.7 94,64,100,100

> artiax geomodel color #1.3.7 17,81,28,100

> artiax geomodel color #1.3.7 0,46,86,100

> artiax geomodel color #1.3.7 0,47,89,100

> artiax geomodel color #1.3.7 0,48,90,100

> artiax geomodel color #1.3.7 0,49,93,100

> artiax geomodel color #1.3.7 0,50,93,100

> artiax geomodel color #1.3.7 0,50,94,100

> artiax geomodel color #1.3.7 0,51,95,100

> artiax geomodel color #1.3.7 0,51,96,100

> artiax geomodel color #1.3.7 0,52,97,100

> artiax geomodel color #1.3.7 0,52,98,100

> artiax geomodel color #1.3.7 0,53,99,100

> artiax geomodel color #1.3.7 0,53,100,100

> artiax geomodel color #1.3.7 100,93,18,100

> artiax geomodel color #1.3.7 100,94,19,100

> artiax geomodel color #1.3.7 100,97,21,100

> artiax geomodel color #1.3.7 100,100,22,100

> artiax geomodel color #1.3.7 98,100,22,100

> artiax geomodel color #1.3.7 96,100,23,100

> artiax geomodel color #1.3.7 96,100,24,100

> artiax geomodel color #1.3.7 96,100,25,100

> artiax geomodel color #1.3.7 96,100,26,100

> artiax geomodel color #1.3.7 96,100,27,100

> artiax geomodel color #1.3.7 96,100,28,100

> artiax geomodel color #1.3.7 96,100,29,100

> artiax geomodel color #1.3.7 96,100,30,100

> artiax geomodel color #1.3.7 96,100,31,100

> artiax geomodel color #1.3.7 96,100,32,100

> artiax geomodel color #1.3.7 96,100,33,100

> artiax geomodel color #1.3.7 96,100,32,100

> artiax geomodel color #1.3.7 96,100,28,100

> artiax geomodel color #1.3.7 93,100,26,100

> artiax geomodel color #1.3.7 92,100,24,100

> artiax geomodel color #1.3.7 89,100,22,100

> artiax geomodel color #1.3.7 86,100,20,100

> artiax geomodel color #1.3.7 86,100,19,100

> artiax geomodel color #1.3.7 86,100,18,100

> artiax geomodel color #1.3.7 86,100,17,100

> artiax geomodel color #1.3.7 85,100,16,100

> artiax geomodel color #1.3.7 85,100,15,100

> artiax geomodel color #1.3.7 85,100,14,100

> artiax geomodel color #1.3.7 85,100,13,100

> artiax geomodel color #1.3.7 85,100,12,100

> artiax geomodel color #1.3.7 85,100,11,100

> artiax geomodel color #1.3.7 85,100,10,100

> artiax geomodel color #1.3.7 87,100,10,100

> artiax geomodel color #1.3.7 91,100,9,100

> artiax geomodel color #1.3.7 92,100,8,100

> artiax geomodel color #1.3.7 92,100,7,100

> artiax geomodel color #1.3.7 95,100,6,100

> artiax geomodel color #1.3.7 95,100,5,100

> artiax geomodel color #1.3.7 95,100,5,39

> artiax geomodel color #1.3.7 95,100,5,29

> show #!1.2.4 models

> hide #!1.3.7 models

> artiax boundary

Created a boundary with 22 vertices.  

> hide #!1.3.8 models

> show #!1.3.7 models

> hide #!1.2.4 models

> artiax geomodel color #1.3.8 0,46,86,100

> artiax geomodel color #1.3.8 17,81,28,100

> artiax geomodel color #1.3.7 0,46,86,29

> artiax geomodel color #1.3.7 0,46,86,100

> artiax geomodel color #1.3.7 95,100,5,100

> artiax geomodel color #1.3.7 95,100,5,97

> artiax geomodel color #1.3.7 95,100,5,77

> show #!1.2.4 models

> hide #!1.2.4 models

> show #!1.2.4 models

> hide #!1.2.4 models

> hide #!1.3.7 models

> show #!1.2.1 models

> hide #!1.2.1 models

> show #!1.3.3 models

> hide #!1.3.3 models

> show #!1.3.4 models

> artiax view xy

> artiax mask

> volume onesmask #1.3.6

Opened mask masked as #2, grid size 101,78,72, pixel 1.32, shown at step 1,
values int8  

> hide #!1.3.4 models

> show #!1.2.1 models

> ui mousemode right "mark point"

> marker #1.2.1.3 position 313.7,486.2,302.9 color #f0a3ff radius 4

> marker #1.2.1.3 position 344.4,475.4,338.5 color #f0a3ff radius 4

> marker #1.2.1.3 position 376.9,445.1,360.7 color #f0a3ff radius 4

> marker #1.2.1.3 position 416.4,413,376.2 color #f0a3ff radius 4

> ui mousemode right select

Drag select of axes, 4 of 659 instances, 3 atoms  
Drag select of axes, 3 of 655 instances, 3 atoms  
Drag select of axes, 1 of 652 instances, 1 atoms  

> artiax view xy

> select clear

Drag select of 2 mask masked  

> select clear

Drag select of axes, 651 atoms  

> artiax boundary

Created a boundary with 651 vertices.  

> hide #!1.3.9 models

> artiax fit sphere

Created sphere with center: (422.72, 301.89, 91.13) and radius: 228.66.  

> hide #!1.3.10 models

> ui mousemode right "mark point"

> marker #1.2.1.3 position 138.4,164.8,-252.5 color #f0a3ff radius 4

> marker #1.2.1.3 position 205.5,192.8,-302.9 color #f0a3ff radius 4

> marker #1.2.1.3 position 293.1,228.5,-315 color #f0a3ff radius 4

> marker #1.2.1.3 position 361.6,256.4,-307 color #f0a3ff radius 4

> marker #1.2.1.3 position 451.3,293.1,-289 color #f0a3ff radius 4

> marker #1.2.1.3 position 545.3,331.6,-244.4 color #f0a3ff radius 4

> marker #1.2.1.3 position 645.4,372.8,-183.4 color #f0a3ff radius 4

> marker #1.2.1.3 position 709.4,398.7,-199.6 color #f0a3ff radius 4

> ui mousemode right select

Drag select of axes, 8 of 659 instances, 8 atoms  

> artiax fit line

Created a Curved line through 8 particles.  

> hide #!1.3.11 models

> hide #!1.2.5 models

> show #!1.2.5 models

> hide #!1.2.1 models

Drag select of axes, 26 atoms  

> select clear

Drag select of axes, 26 atoms  

> artiax fit surface

Created a Surface through 26 particles with normal (0.38, -0.93, 0.00).  

> hide #!1.3.12 models

> artiax boundary

Created a boundary with 26 vertices.  

> ui mousemode right "delete tetra from boundary"

> hide #!1.3.13 models

> show #!1.3.9 models

> undo

> show #!1.3.9 models

> undo

> redo

> show #!1.2.4 models

> hide #!1.2.4 models

> show #!1.2.1 models

> ui mousemode right "mark point"

> marker #1.2.1.3 position 314.2,263.7,-19.88 color #f0a3ff radius 4

> ui mousemode right select

Drag select of axes, 185 of 660 instances, boundary, 332 of 940 triangles, 202
atoms  
Drag select of axes, 226 of 660 instances, boundary, 280 of 940 triangles, 210
atoms  

> hide #!1.3.12 models

> hide #!1.3.13 models

> hide #!1.2.5 models

> volume #2 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 230.3 tiltedSlabSpacing 1.319 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

Errors may have occurred when running pip:  

pip standard error:  
\---  
WARNING: Value for scheme.platlib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\gunna\AppData\Local\UCSF\ChimeraX\1.3\site-packages  
sysconfig: C:\Users\gunna\AppData\Roaming\Python\Python39\site-packages  
WARNING: Value for scheme.purelib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\gunna\AppData\Local\UCSF\ChimeraX\1.3\site-packages  
sysconfig: C:\Users\gunna\AppData\Roaming\Python\Python39\site-packages  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils:
C:\Users\gunna\AppData\Local\UCSF\ChimeraX\Python39\Include\ChimeraX-ArtiaX  
sysconfig: C:\Users\gunna\AppData\Roaming\Python\Python39\Include\ChimeraX-
ArtiaX  
WARNING: Value for scheme.scripts does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\gunna\AppData\Local\UCSF\ChimeraX\Python39\Scripts  
sysconfig: C:\Users\gunna\AppData\Roaming\Python\Python39\Scripts  
WARNING: Value for scheme.data does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\gunna\AppData\Local\UCSF\ChimeraX  
sysconfig: C:\Users\gunna\AppData\Roaming\Python  
WARNING: Additional context:  
user = True  
home = None  
root = None  
prefix = None  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\gunna\AppData\Local\UCSF\ChimeraX\Python39\Include\UNKNOWN  
sysconfig: C:\Users\gunna\AppData\Roaming\Python\Python39\Include\UNKNOWN  
WARNING: You are using pip version 21.2.4; however, version 22.2.2 is
available.  
You should consider upgrading via the 'C:\Program Files\ChimeraX
1.3\bin\ChimeraX.exe -m pip install --upgrade pip' command.  
\---  

pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Collecting ChimeraX-ArtiaX==0.2  
Downloading
https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxartiax/releases/0.2/ChimeraX_ArtiaX-0.2-py3-none-
any.whl (1.2 MB)  
Installing collected packages: ChimeraX-ArtiaX  
Attempting uninstall: ChimeraX-ArtiaX  
Found existing installation: ChimeraX-ArtiaX 0.2a1  
Uninstalling ChimeraX-ArtiaX-0.2a1:  
Successfully uninstalled ChimeraX-ArtiaX-0.2a1  
Successfully installed ChimeraX-ArtiaX-0.2  
\---  

Successfully installed ChimeraX-ArtiaX-0.2  
Installed ChimeraX-ArtiaX (0.2)  
Replacing data format 'Artiatomi Motivelist' as defined by ChimeraX-ArtiaX
with definition from ChimeraX-ArtiaX  
Replacing data format 'Generic Particle List' as defined by ChimeraX-ArtiaX
with definition from ChimeraX-ArtiaX  
Replacing data format 'Dynamo Table' as defined by ChimeraX-ArtiaX with
definition from ChimeraX-ArtiaX  
Replacing data format 'RELION STAR file' as defined by ChimeraX-ArtiaX with
definition from ChimeraX-ArtiaX  
Replacing data format 'Coords file' as defined by ChimeraX-ArtiaX with
definition from ChimeraX-ArtiaX  
Replacing data format 'PEET mod/csv' as defined by ChimeraX-ArtiaX with
definition from ChimeraX-ArtiaX  
Replacing data format 'ArtiaX geometric model' as defined by ChimeraX-ArtiaX
with definition from ChimeraX-ArtiaX  

Overriding existing toolbar provider for toolbar provider 'Launch' in bundle
'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'Help' in bundle
'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'XY' in bundle
'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'XZ' in bundle
'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'YZ' in bundle
'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'Invert Selection'
in bundle 'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'Sphere' in bundle
'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'Line' in bundle
'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'Surface' in bundle
'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'Boundary' in bundle
'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'Triangles From
Links' in bundle 'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'Triangulate' in
bundle 'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'Remove Selected' in
bundle 'ChimeraX-ArtiaX'  

Overriding existing toolbar provider for toolbar provider 'Create Mask' in
bundle 'ChimeraX-ArtiaX'  




OpenGL version: 3.3.0 NVIDIA 512.59
OpenGL renderer: NVIDIA GeForce GTX 1060 with Max-Q Design/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: LENOVO
Model: 80YY
OS: Microsoft Windows 10 Home (Build 19044)
Memory: 8,476,856,320
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-7700HQ CPU @ 2.80GHz
OSLanguage: en-US
Locale: ('en_SE', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-ArtiaX: 0.2a1
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    geomdl: 5.3.1
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    pandas: 1.4.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    starfile: 0.4.11
    suds-jurko: 0.6
    superqt: 0.3.2
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    typing-extensions: 4.2.0
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (3)

comment:1 by pett, 3 years ago

Cc: Tom Goddard added
Component: UnassignedGraphics
Owner: set to Greg Couch
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionCrash drawing side view

comment:2 by Tom Goddard, 3 years ago

The crash was in OpenGL swap buffers, almost surely a graphics driver crash. The user could do is update their driver.

I suggest closing this ticket.

comment:3 by Greg Couch, 3 years ago

Resolution: can't reproduce
Status: assignedclosed
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