![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#7640 closed defect (can't reproduce)
Crash in color button callback
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | UI | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000103097dc0 (most recent call first):
File "/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/widgets/color_button.py", line 147 in
File "/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
File "/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
File "/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in
File "/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [39235]
Path: /opt/sbgrid/*/ChimeraX.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.4.0 (1.4.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [39235]
User ID: 501
Date/Time: 2022-09-20 10:09:00.816 -0700
OS Version: Mac OS X 10.15.7 (19H2026)
Report Version: 12
Anonymous UUID: 287CD31C-8F23-DBFF-A0C9-79D0CEFF88E1
Time Awake Since Boot: 2300000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: EXC_I386_GPFLT
Exception Note: EXC_CORPSE_NOTIFY
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff730e832a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff731a4e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff72fff93e raise + 26
3 ??? 0x00007fff731995fd 0 + 140735124444669
4 libsystem_m.dylib 000000000000000000 0 + 0
5 org.python.python 0x000000010132ff4f method_vectorcall_VARARGS + 303
6 org.python.python 0x00000001013ffe0c call_function + 732
7 org.python.python 0x00000001013fd27e _PyEval_EvalFrameDefault + 25518
8 org.python.python 0x0000000101400b03 _PyEval_EvalCode + 2611
9 org.python.python 0x0000000101327cb1 _PyFunction_Vectorcall + 289
10 QtCore.abi3.so 0x00000001028bd607 PyQtSlot::call(_object*, _object*) const + 39
11 QtCore.abi3.so 0x00000001028bd516 PyQtSlot::invoke(void**, _object*, void*, bool) const + 358
12 QtCore.abi3.so 0x00000001028be445 PyQtSlotProxy::unislot(void**) + 85
13 QtCore.abi3.so 0x00000001028be3ba PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
14 QtCore 0x00000001130d39e7 0x113017000 + 772583
15 QtCore 0x00000001130e84d7 QTimer::timerEvent(QTimerEvent*) + 199
16 QtCore.abi3.so 0x00000001027acbf9 sipQTimer::timerEvent(QTimerEvent*) + 121
17 QtCore 0x00000001130cbbad QObject::event(QEvent*) + 109
18 QtCore.abi3.so 0x00000001027aca7a sipQTimer::event(QEvent*) + 186
19 QtWidgets 0x000000011715f067 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
20 QtWidgets 0x0000000117160023 QApplication::notify(QObject*, QEvent*) + 499
21 QtWidgets.abi3.so 0x0000000116c81829 sipQApplication::notify(QObject*, QEvent*) + 233
22 QtCore 0x0000000113082dca QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
23 QtCore 0x000000011320ea01 QTimerInfoList::activateTimers() + 961
24 libqcocoa.dylib 0x0000000123a27885 0x123a0f000 + 100485
25 com.apple.CoreFoundation 0x00007fff3931bf92 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
26 com.apple.CoreFoundation 0x00007fff3931bf31 __CFRunLoopDoSource0 + 103
27 com.apple.CoreFoundation 0x00007fff3931bda7 __CFRunLoopDoSources0 + 301
28 com.apple.CoreFoundation 0x00007fff3931aa7a __CFRunLoopRun + 927
29 com.apple.CoreFoundation 0x00007fff3931a07e CFRunLoopRunSpecific + 462
30 com.apple.HIToolbox 0x00007fff37f46aad RunCurrentEventLoopInMode + 292
31 com.apple.HIToolbox 0x00007fff37f466e4 ReceiveNextEventCommon + 359
32 com.apple.HIToolbox 0x00007fff37f46569 _BlockUntilNextEventMatchingListInModeWithFilter + 64
33 ??? 0x00007fff3658f3c9 0 + 140734105187273
34 ??? 0x00007fff3658dc10 0 + 140734105181200
35 ??? 0x00007fff3657f91e 0 + 140734105123102
36 libqcocoa.dylib 0x0000000123a2848c 0x123a0f000 + 103564
37 QtCore 0x000000011308c516 QEventLoop::exec(QFlags) + 486
38 QtCore 0x00000001130833e5 QCoreApplication::exec() + 133
39 QtWidgets.abi3.so 0x0000000116d6e90a meth_QApplication_exec(_object*, _object*) + 90
40 org.python.python 0x000000010136671d cfunction_call + 125
41 org.python.python 0x00000001013275b7 _PyObject_MakeTpCall + 359
42 org.python.python 0x00000001013ffe9c call_function + 876
43 org.python.python 0x00000001013fd2a2 _PyEval_EvalFrameDefault + 25554
44 org.python.python 0x0000000101327d28 function_code_fastcall + 104
45 org.python.python 0x0000000101329d6a method_vectorcall + 202
46 org.python.python 0x00000001013ffe0c call_function + 732
47 org.python.python 0x00000001013fd2a2 _PyEval_EvalFrameDefault + 25554
48 org.python.python 0x0000000101400b03 _PyEval_EvalCode + 2611
49 org.python.python 0x0000000101327cb1 _PyFunction_Vectorcall + 289
50 org.python.python 0x00000001013ffe0c call_function + 732
51 org.python.python 0x00000001013fd34b _PyEval_EvalFrameDefault + 25723
52 org.python.python 0x0000000101400b03 _PyEval_EvalCode + 2611
53 org.python.python 0x00000001013f6dab PyEval_EvalCode + 139
54 org.python.python 0x00000001013f3c12 builtin_exec + 626
55 org.python.python 0x0000000101366023 cfunction_vectorcall_FASTCALL + 195
56 org.python.python 0x00000001013ffe0c call_function + 732
57 org.python.python 0x00000001013fd34b _PyEval_EvalFrameDefault + 25723
58 org.python.python 0x0000000101400b03 _PyEval_EvalCode + 2611
59 org.python.python 0x0000000101327cb1 _PyFunction_Vectorcall + 289
60 org.python.python 0x00000001013ffe0c call_function + 732
61 org.python.python 0x00000001013fd34b _PyEval_EvalFrameDefault + 25723
62 org.python.python 0x0000000101400b03 _PyEval_EvalCode + 2611
63 org.python.python 0x0000000101327cb1 _PyFunction_Vectorcall + 289
64 org.python.python 0x0000000101466870 pymain_run_module + 208
65 org.python.python 0x0000000101465f87 Py_RunMain + 1431
66 org.python.python 0x000000010146658f pymain_main + 223
67 org.python.python 0x000000010146649b Py_Main + 43
68 edu.ucsf.cgl.ChimeraX 0x00000001012e1dc8 main + 120
69 libdyld.dylib 0x00007fff72fa0cc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff730e4872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff731a5425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010340349f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff730e4872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff731a5425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010340349f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff730e4872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff731a5425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010340349f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 4:
0 libsystem_kernel.dylib 0x00007fff730e4872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff731a5425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010340349f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 5:
0 libsystem_kernel.dylib 0x00007fff730e4872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff731a5425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010340349f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 6:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff730eab86 kevent64 + 10
1 QtWebEngineCore 0x000000011bef75ca 0x117f95000 + 66463178
2 QtWebEngineCore 0x000000011bef74c7 0x117f95000 + 66462919
3 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
4 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
5 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
6 QtWebEngineCore 0x000000011be7d84d 0x117f95000 + 65964109
7 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
8 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
9 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 7:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011be89d5f 0x117f95000 + 66014559
4 QtWebEngineCore 0x000000011be8a80c 0x117f95000 + 66017292
5 QtWebEngineCore 0x000000011be8a40d 0x117f95000 + 66016269
6 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
7 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 8:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011be89d5f 0x117f95000 + 66014559
4 QtWebEngineCore 0x000000011be8a80c 0x117f95000 + 66017292
5 QtWebEngineCore 0x000000011be8a37d 0x117f95000 + 66016125
6 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
7 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 9:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff730eab86 kevent64 + 10
1 QtWebEngineCore 0x000000011bef75ca 0x117f95000 + 66463178
2 QtWebEngineCore 0x000000011bef74c7 0x117f95000 + 66462919
3 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
4 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
5 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
6 QtWebEngineCore 0x000000011adbce32 0x117f95000 + 48397874
7 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
8 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
9 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011bec578f 0x117f95000 + 66258831
4 QtWebEngineCore 0x000000011bdfb089 0x117f95000 + 65429641
5 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
6 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
7 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
8 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
9 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
10 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 11:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff730e4872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff731a5425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x000000011bebd8bb 0x117f95000 + 66226363
3 QtWebEngineCore 0x000000011df8e55d 0x117f95000 + 100635997
4 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
5 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 12:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011bdfb028 0x117f95000 + 65429544
4 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
5 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
6 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
7 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
8 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
9 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 13:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff730eab86 kevent64 + 10
1 QtWebEngineCore 0x000000011bef75ca 0x117f95000 + 66463178
2 QtWebEngineCore 0x000000011bef74c7 0x117f95000 + 66462919
3 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
4 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
5 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
6 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
7 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
8 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011bec578f 0x117f95000 + 66258831
4 QtWebEngineCore 0x000000011bdfb089 0x117f95000 + 65429641
5 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
6 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
7 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
8 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
9 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
10 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 15:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011bec578f 0x117f95000 + 66258831
4 QtWebEngineCore 0x000000011bdfb089 0x117f95000 + 65429641
5 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
6 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
7 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
8 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
9 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
10 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 16:: NetworkService
0 libsystem_kernel.dylib 0x00007fff730eab86 kevent64 + 10
1 QtWebEngineCore 0x000000011bef75ca 0x117f95000 + 66463178
2 QtWebEngineCore 0x000000011bef74c7 0x117f95000 + 66462919
3 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
4 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
5 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
6 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
7 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
8 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011bec578f 0x117f95000 + 66258831
4 QtWebEngineCore 0x000000011bdfb089 0x117f95000 + 65429641
5 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
6 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
7 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
8 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
9 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
10 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 18:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011be89d5f 0x117f95000 + 66014559
4 QtWebEngineCore 0x000000011be8a80c 0x117f95000 + 66017292
5 QtWebEngineCore 0x000000011be8a46d 0x117f95000 + 66016365
6 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
7 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 19:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011bec578f 0x117f95000 + 66258831
4 QtWebEngineCore 0x000000011bdfb089 0x117f95000 + 65429641
5 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
6 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
7 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
8 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
9 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
10 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 20:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff3931c135 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff3931ac02 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff3931a07e CFRunLoopRunSpecific + 462
5 ??? 0x00007fff36730bf4 0 + 140734106897396
6 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 21:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011bec578f 0x117f95000 + 66258831
4 QtWebEngineCore 0x000000011bdfb089 0x117f95000 + 65429641
5 QtWebEngineCore 0x000000011be7419c 0x117f95000 + 65925532
6 QtWebEngineCore 0x000000011be2bff8 0x117f95000 + 65630200
7 QtWebEngineCore 0x000000011be96458 0x117f95000 + 66065496
8 QtWebEngineCore 0x000000011be965ea 0x117f95000 + 66065898
9 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
10 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 22:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011be89d5f 0x117f95000 + 66014559
4 QtWebEngineCore 0x000000011be8a53a 0x117f95000 + 66016570
5 QtWebEngineCore 0x000000011be8a3ad 0x117f95000 + 66016173
6 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
7 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 23:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011be89d5f 0x117f95000 + 66014559
4 QtWebEngineCore 0x000000011be8a80c 0x117f95000 + 66017292
5 QtWebEngineCore 0x000000011be8a40d 0x117f95000 + 66016269
6 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
7 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 24:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 QtWebEngineCore 0x000000011bec59c6 0x117f95000 + 66259398
3 QtWebEngineCore 0x000000011be89d5f 0x117f95000 + 66014559
4 QtWebEngineCore 0x000000011be8a80c 0x117f95000 + 66017292
5 QtWebEngineCore 0x000000011be8a37d 0x117f95000 + 66016125
6 QtWebEngineCore 0x000000011bebe4a8 0x117f95000 + 66229416
7 libsystem_pthread.dylib 0x00007fff731a5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff731a0b8b thread_start + 15
Thread 25:: Dispatch queue: com.apple.root.user-interactive-qos
0 libsystem_kernel.dylib 0x00007fff730e1dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff730e2160 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff3931c135 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff3931ac02 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff3931a07e CFRunLoopRunSpecific + 462
5 com.apple.Foundation 0x00007fff3b9b9c48 -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 212
6 ??? 0x00007fff36835690 0 + 140734107965072
7 ??? 0x00007fff3683536d 0 + 140734107964269
8 libdispatch.dylib 0x00007fff72f466c4 _dispatch_call_block_and_release + 12
9 libdispatch.dylib 0x00007fff72f47658 _dispatch_client_callout + 8
10 libdispatch.dylib 0x00007fff72f55aa8 _dispatch_root_queue_drain + 663
11 libdispatch.dylib 0x00007fff72f56097 _dispatch_worker_thread2 + 92
12 libsystem_pthread.dylib 0x00007fff731a19f7 _pthread_wqthread + 220
13 libsystem_pthread.dylib 0x00007fff731a0b77 start_wqthread + 15
Thread 26:: Dispatch queue: NSCGSDisableUpdates
0 libsystem_kernel.dylib 0x00007fff730e1e3e semaphore_timedwait_trap + 10
1 com.apple.SkyLight 0x00007fff68412332 CGSUpdateManager::enable_updates_common() + 302
2 com.apple.SkyLight 0x00007fff684126f6 SLSReenableUpdateToken + 104
3 libdispatch.dylib 0x00007fff72f466c4 _dispatch_call_block_and_release + 12
4 libdispatch.dylib 0x00007fff72f47658 _dispatch_client_callout + 8
5 libdispatch.dylib 0x00007fff72f4cc44 _dispatch_lane_serial_drain + 597
6 libdispatch.dylib 0x00007fff72f4d5d6 _dispatch_lane_invoke + 363
7 libdispatch.dylib 0x00007fff72f56c09 _dispatch_workloop_worker_thread + 596
8 libsystem_pthread.dylib 0x00007fff731a1a3d _pthread_wqthread + 290
9 libsystem_pthread.dylib 0x00007fff731a0b77 start_wqthread + 15
Thread 27:
0 libsystem_pthread.dylib 0x00007fff731a0b68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000103097dc0 rcx: 0x00007fb278047a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fb278047a80 rsp: 0x00007fb278047a58
r8: 0x00007fb278047f48 r9: 0x18810e8e26955d36 r10: 0x0000000103097dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff730e832a rfl: 0x0000000000000246 cr2: 0x00007fb278047f48
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
0 - 0xffffffffffffffff libsystem_m.dylib (???) /usr/lib/system/libsystem_m.dylib
0 - 0xffffffffffffffff libsystem_platform.dylib (???) /usr/lib/system/libsystem_platform.dylib
0 - 0xffffffffffffffff com.apple.framework.IOKit (2.0.2 - ???) /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0 - 0xffffffffffffffff com.apple.AppKit (6.9 - 1894.70.110) /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0 - 0xffffffffffffffff com.apple.CFNetwork (1128.1 - 1128.1) /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
0 - 0xffffffffffffffff libbsm.0.dylib (???) /usr/lib/libbsm.0.dylib
0 - 0xffffffffffffffff libpam.2.dylib (???) /usr/lib/libpam.2.dylib
0 - 0xffffffffffffffff libapple_nghttp2.dylib (???) /usr/lib/libapple_nghttp2.dylib
0 - 0xffffffffffffffff com.apple.LaunchServices (1069.28 - 1069.28) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0 - 0xffffffffffffffff com.apple.coreservices.SharedFileList (131.4 - 131.4) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList
0 - 0xffffffffffffffff com.apple.xpc.ServiceManagement (1.0 - 1) /System/Library/Frameworks/ServiceManagement.framework/Versions/A/ServiceManagement
0 - 0xffffffffffffffff com.apple.dt.XCTTargetBootstrap (1.0 - 16091) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap
0 - 0xffffffffffffffff com.apple.MetalPerformanceShaders.MPSNeuralNetwork (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSNeuralNetwork.framework/Versions/A/MPSNeuralNetwork
0 - 0xffffffffffffffff com.apple.MetalPerformanceShaders.MPSMatrix (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSMatrix.framework/Versions/A/MPSMatrix
0 - 0xffffffffffffffff libhvf.dylib (???) /System/Library/PrivateFrameworks/FontServices.framework/libhvf.dylib
0 - 0xffffffffffffffff com.apple.LangAnalysis (1.7.0 - 1.7.0) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0 - 0xffffffffffffffff com.apple.Kerberos (3.0 - 1) /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0 - 0xffffffffffffffff libHeimdalProxy.dylib (???) /System/Library/Frameworks/Kerberos.framework/Versions/A/Libraries/libHeimdalProxy.dylib
0 - 0xffffffffffffffff com.apple.audio.caulk (1.0 - ???) /System/Library/PrivateFrameworks/caulk.framework/Versions/A/caulk
0 - 0xffffffffffffffff com.apple.Carbon (160 - 162) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0 - 0xffffffffffffffff com.apple.avfoundation (2.0 - 1855.3) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0 - 0xffffffffffffffff com.apple.DebugSymbols (194 - 194) /System/Library/PrivateFrameworks/DebugSymbols.framework/Versions/A/DebugSymbols
0 - 0xffffffffffffffff com.apple.MediaKit (16 - 923) /System/Library/PrivateFrameworks/MediaKit.framework/Versions/A/MediaKit
0 - 0xffffffffffffffff libprotobuf.dylib (???) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib
0 - 0xffffffffffffffff com.apple.InternationalTextSearch (1.0 - 1) /System/Library/PrivateFrameworks/InternationalTextSearch.framework/Versions/A/InternationalTextSearch
0 - 0xffffffffffffffff com.apple.MobileAssets (1.0 - 619.120.1) /System/Library/PrivateFrameworks/MobileAsset.framework/Versions/A/MobileAsset
0 - 0xffffffffffffffff com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip
0x1012e1000 - 0x1012e1ff3 +edu.ucsf.cgl.ChimeraX (1.4.0 - 1.4.0.0) /opt/sbgrid/*/ChimeraX.app/Contents/MacOS/ChimeraX
0x1012e8000 - 0x101550fff +org.python.python (3.9.11, [c] 2001-2021 Python Software Foundation. - 3.9.11) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
0x1016c4000 - 0x1016c6fff +_heapq.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x1016d0000 - 0x1016d4ff7 +binascii.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x1016de000 - 0x1016e3fff +zlib.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
0x1016ed000 - 0x1016effff +_bz2.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x1016f9000 - 0x10172afff +_lzma.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
0x10173c000 - 0x10173dfff +grp.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so
0x101747000 - 0x10174cff7 +_struct.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so
0x10175b000 - 0x101763fff +math.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x101771000 - 0x101772ff7 +_bisect.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
0x10177c000 - 0x10177dfff +_random.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
0x101787000 - 0x10178bfff +_sha512.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so
0x101795000 - 0x101795fff +_arrays.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/_arrays.cpython-39-darwin.so
0x10179c000 - 0x10183dff7 +libarrays.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/lib/libarrays.dylib
0x101861000 - 0x101866fff +_json.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x101870000 - 0x101c37ff3 +_multiarray_umath.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x101d7c000 - 0x101e93ff7 +libgfortran.3.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x101f01000 - 0x101f37fff +libquadmath.0.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x101f4b000 - 0x101f60ff7 +libgcc_s.1.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x101f70000 - 0x101f7ffff +_datetime.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so
0x101f93000 - 0x101faafff +_pickle.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so
0x101fbd000 - 0x101fd0ff7 +_multiarray_tests.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
0x101fea000 - 0x101fecfff +_posixsubprocess.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
0x101ff6000 - 0x101ffaff7 +select.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so
0x102004000 - 0x102015ff7 +_ctypes.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so
0x10202e000 - 0x102049fff +_umath_linalg.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so
0x102062000 - 0x102075fff +_pocketfft_internal.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so
0x102081000 - 0x1020f4ff3 +mtrand.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/mtrand.cpython-39-darwin.so
0x102157000 - 0x102176fff +bit_generator.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/bit_generator.cpython-39-darwin.so
0x102199000 - 0x1021ccff3 +_common.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_common.cpython-39-darwin.so
0x1021eb000 - 0x1021f1fff +_hashlib.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_hashlib.cpython-39-darwin.so
0x102200000 - 0x102259ff7 +libssl.1.1.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libssl.1.1.dylib
0x10228b000 - 0x1024a297f +libcrypto.1.1.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libcrypto.1.1.dylib
0x102542000 - 0x102548fff +_blake2.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_blake2.cpython-39-darwin.so
0x102552000 - 0x1025a5ffb +_bounded_integers.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_bounded_integers.cpython-39-darwin.so
0x1025d5000 - 0x1025e4ff3 +_mt19937.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_mt19937.cpython-39-darwin.so
0x1025f7000 - 0x102606ff7 +_philox.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_philox.cpython-39-darwin.so
0x102618000 - 0x102627ff3 +_pcg64.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_pcg64.cpython-39-darwin.so
0x10263b000 - 0x102642ff7 +_sfc64.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_sfc64.cpython-39-darwin.so
0x102653000 - 0x1026e2ffb +_generator.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_generator.cpython-39-darwin.so
0x10274d000 - 0x10274dfff +_opcode.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_opcode.cpython-39-darwin.so
0x102757000 - 0x102775ff3 +_geometry.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/geometry/_geometry.cpython-39-darwin.so
0x10278a000 - 0x10290dff7 +QtCore.abi3.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtCore.abi3.so
0x102b63000 - 0x102b7aff3 +sip.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/sip.cpython-39-darwin.so
0x102b91000 - 0x102c1cff7 +QtDBus (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtDBus.framework/Versions/A/QtDBus
0x102c41000 - 0x102da8ff3 +QtGui.abi3.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtGui.abi3.so
0x102f7c000 - 0x102f8bff3 +QtWebEngineWidgets.abi3.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtWebEngineWidgets.abi3.so
0x102f9f000 - 0x102fb2ffb +QtWebEngineWidgets (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtWebEngineWidgets.framework/Versions/A/QtWebEngineWidgets
0x102fcc000 - 0x10305e267 dyld (750.7) /usr/lib/dyld
0x1030d2000 - 0x106d5bb47 +libopenblas64_.0.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x113017000 - 0x11351215b +QtCore (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore
0x1135c8000 - 0x1135dbfff +QtQuickWidgets (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtQuickWidgets.framework/Versions/A/QtQuickWidgets
0x116b44000 - 0x116df3fff +QtWidgets.abi3.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtWidgets.abi3.so
0x117151000 - 0x117614fff +QtWidgets (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtWidgets.framework/Versions/A/QtWidgets
0x11776f000 - 0x117deefe7 +QtGui (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtGui.framework/Versions/A/QtGui
0x117f1a000 - 0x117f65fff +QtPrintSupport (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtPrintSupport.framework/Versions/A/QtPrintSupport
0x117f95000 - 0x121d00f3f +QtWebEngineCore (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtWebEngineCore.framework/Versions/A/QtWebEngineCore
0x122995000 - 0x122d80ff3 +QtQuick (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtQuick.framework/Versions/A/QtQuick
0x122edf000 - 0x122f4aff3 +QtOpenGL (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtOpenGL.framework/Versions/A/QtOpenGL
0x122f7a000 - 0x123001ff7 +QtQmlModels (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtQmlModels.framework/Versions/A/QtQmlModels
0x12302f000 - 0x123066fff +QtWebChannel (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtWebChannel.framework/Versions/A/QtWebChannel
0x12307c000 - 0x123463ff3 +QtQml (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtQml.framework/Versions/A/QtQml
0x12351e000 - 0x123651fff +QtNetwork (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtNetwork.framework/Versions/A/QtNetwork
0x1236a2000 - 0x123719fff +QtPositioning (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtPositioning.framework/Versions/A/QtPositioning
0x12373a000 - 0x123755ff6 com.apple.SafariServices.framework (15613 - 15613.3.9.1.16) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x12377b000 - 0x123782ffb +QtWebChannel.abi3.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtWebChannel.abi3.so
0x123790000 - 0x1237fffff +QtNetwork.abi3.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtNetwork.abi3.so
0x1238a4000 - 0x1238d3ff3 +QtWebEngineCore.abi3.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtWebEngineCore.abi3.so
0x123937000 - 0x12395aff7 +QtPrintSupport.abi3.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtPrintSupport.abi3.so
0x123a0f000 - 0x123aaeffb +libqcocoa.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/platforms/libqcocoa.dylib
0x1246a8000 - 0x12476efff com.apple.AMDRadeonX4000GLDriver (3.10.23 - 3.1.0) /System/Library/Extensions/AMDRadeonX4000GLDriver.bundle/Contents/MacOS/AMDRadeonX4000GLDriver
0x1247c5000 - 0x1247c7fff +fcntl.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/fcntl.cpython-39-darwin.so
0x1247d1000 - 0x1247defff +_socket.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_socket.cpython-39-darwin.so
0x124e0d000 - 0x124e34ff3 +libqmacstyle.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/styles/libqmacstyle.dylib
0x124e4b000 - 0x124e76ff7 +pyexpat.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/pyexpat.cpython-39-darwin.so
0x124e8f000 - 0x124e96fff +array.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/array.cpython-39-darwin.so
0x124ea4000 - 0x124ea4fff +_load_libs.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic_lib/_load_libs.cpython-39-darwin.so
0x124eac000 - 0x124fdcffb +libatomstruct.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic_lib/lib/libatomstruct.dylib
0x12507b000 - 0x125080fff +libelement.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic_lib/lib/libelement.dylib
0x125090000 - 0x125090ffb +libpyinstance.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic_lib/lib/libpyinstance.dylib
0x125098000 - 0x1250cbff3 +libmolc.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/libmolc.dylib
0x12510d000 - 0x125166fff +cymol.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/cymol.cpython-39-darwin.so
0x1251a8000 - 0x1251c1ff3 +tinyarray.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/tinyarray.cpython-39-darwin.so
0x1251de000 - 0x1251e5ff3 +cytmpl.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/cytmpl.cpython-39-darwin.so
0x1251f5000 - 0x125219ffb +_surface.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/surface/_surface.cpython-39-darwin.so
0x12522e000 - 0x12522effb +_load_libs.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/pdb_lib/_load_libs.cpython-39-darwin.so
0x125236000 - 0x12523bfff +libpdbconnect.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/pdb_lib/lib/libpdbconnect.dylib
0x125247000 - 0x12525bfff +_ssl.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ssl.cpython-39-darwin.so
0x125278000 - 0x125278ff7 +_scproxy.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_scproxy.cpython-39-darwin.so
0x125282000 - 0x125304ff3 +_map.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/_map.cpython-39-darwin.so
0x125332000 - 0x125333fff +_queue.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_queue.cpython-39-darwin.so
0x12533d000 - 0x125447ff7 +unicodedata.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/unicodedata.cpython-39-darwin.so
0x125456000 - 0x12545aff7 +_multibytecodec.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_multibytecodec.cpython-39-darwin.so
0x125469000 - 0x125469fff +_uuid.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_uuid.cpython-39-darwin.so
0x125473000 - 0x12553affb +_imaging.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/_imaging.cpython-39-darwin.so
0x125573000 - 0x1255f2fff +libopenjp2.2.4.0.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libopenjp2.2.4.0.dylib
0x125607000 - 0x125622ffb +libz.1.2.11.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libz.1.2.11.dylib
0x12562f000 - 0x125732ff7 +libtiff.5.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libtiff.5.dylib
0x125757000 - 0x12576aff7 +libxcb.1.1.0.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libxcb.1.1.0.dylib
0x125787000 - 0x1257b6fff +liblzma.5.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/liblzma.5.dylib
0x1257c7000 - 0x1257cafff +libXau.6.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libXau.6.dylib
0x1257db000 - 0x1257defff +libXdmcp.6.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libXdmcp.6.dylib
0x1257ef000 - 0x125839ff7 +_decimal.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_decimal.cpython-39-darwin.so
0x125859000 - 0x12585cfff +lib_geometry.dylib (0) /Users/USER/Library/Application Support/ChimeraX/*/lib_geometry.dylib
0x125865000 - 0x125a61ff3 +_openmm.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/openmm/_openmm.cpython-39-darwin.so
0x125b23000 - 0x125d4bff3 +libOpenMM.7.7.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/libOpenMM.7.7.dylib
0x125e4a000 - 0x125e78ff3 +libOpenMMAmoeba.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/libOpenMMAmoeba.dylib
0x125e9d000 - 0x125ea5fff +libOpenMMRPMD.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/libOpenMMRPMD.dylib
0x125eb2000 - 0x125ebfff7 +libOpenMMDrude.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/libOpenMMDrude.dylib
0x125ed0000 - 0x125f2affb +libOpenMMCPU.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/plugins/libOpenMMCPU.dylib
0x125f61000 - 0x12613afff +libOpenMMOpenCL.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/plugins/libOpenMMOpenCL.dylib
0x12619c000 - 0x1261affff +libOpenMMRPMDOpenCL.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/plugins/libOpenMMRPMDOpenCL.dylib
0x1261bd000 - 0x1261ccfff +libOpenMMDrudeOpenCL.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/plugins/libOpenMMDrudeOpenCL.dylib
0x1261d9000 - 0x1262adff7 +libOpenMMAmoebaOpenCL.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/plugins/libOpenMMAmoebaOpenCL.dylib
0x1262c9000 - 0x1262d1fff +libOpenMMRPMDReference.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/plugins/libOpenMMRPMDReference.dylib
0x1262db000 - 0x1262e3ffb +libOpenMMDrudeReference.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/plugins/libOpenMMDrudeReference.dylib
0x1262ee000 - 0x12634afff +libOpenMMAmoebaReference.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/lib/plugins/libOpenMMAmoebaReference.dylib
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0x12638b000 - 0x1263a3ffb +compiled.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/openmm/app/internal/compiled.cpython-39-darwin.so
0x1263b5000 - 0x126438fff +libmolc.dylib (0) /Users/USER/Library/Application Support/ChimeraX/*/libmolc.dylib
0x1264e1000 - 0x1264e9ff7 +errorchecker.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/errorchecker.cpython-39-darwin.so
0x1264f8000 - 0x126522ff7 +arraydatatype.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/arraydatatype.cpython-39-darwin.so
0x126546000 - 0x126578ff3 +wrapper.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/wrapper.cpython-39-darwin.so
0x1265a1000 - 0x1265aaff7 +formathandler.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/formathandler.cpython-39-darwin.so
0x1265ba000 - 0x1265c1ffb +latebind.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/latebind.cpython-39-darwin.so
0x1265d0000 - 0x1265e9ff3 +vbo.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/vbo.cpython-39-darwin.so
0x127b31000 - 0x127b38fff +libqgif.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqgif.dylib
0x127b4e000 - 0x129405ff7 com.apple.AppleIntelKBLGraphicsVADriver (14.7.28 - 14.0.7) /System/Library/Extensions/AppleIntelKBLGraphicsVADriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsVADriver
0x1294e3000 - 0x129574ff7 com.apple. AMDRadeonVADriver2 (3.10.23 - 3.1.0) /System/Library/Extensions/AMDRadeonVADriver2.bundle/Contents/MacOS/AMDRadeonVADriver2
0x129655000 - 0x12965cff3 +libqicns.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqicns.dylib
0x129669000 - 0x129670ffb +libqico.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqico.dylib
0x12967c000 - 0x129683ff7 +libqtga.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqtga.dylib
0x12968f000 - 0x129691ff3 com.apple.AppleIntelCFLGraphicsVAME (14.7.28 - 14.0.7) /System/Library/Extensions/AppleIntelCFLGraphicsVAME.bundle/Contents/MacOS/AppleIntelCFLGraphicsVAME
0x1297ba000 - 0x129829ff3 +libqjpeg.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqjpeg.dylib
0x129838000 - 0x12983fff7 +libqmacheif.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqmacheif.dylib
0x12984c000 - 0x129853ff3 +libqmacjp2.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqmacjp2.dylib
0x129860000 - 0x129867ff3 +libqsvg.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqsvg.dylib
0x129874000 - 0x12987bfff +libqwbmp.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqwbmp.dylib
0x129887000 - 0x12988a047 libobjc-trampolines.dylib (787.1) /usr/lib/libobjc-trampolines.dylib
0x129893000 - 0x129893fff +_mac_util.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/_mac_util.so
0x12a085000 - 0x12a0c0ff7 +QtSvg (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtSvg.framework/Versions/A/QtSvg
0x12a0df000 - 0x12a146fff +libqtiff.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqtiff.dylib
0x12a154000 - 0x12a1dfffb +libqwebp.dylib (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/plugins/imageformats/libqwebp.dylib
0x12abbc000 - 0x12abd2ff7 com.apple.security.csparser (3.0 - 59306.140.11) /System/Library/Frameworks/Security.framework/PlugIns/csparser.bundle/Contents/MacOS/csparser
0x12ae8b000 - 0x12ae9bffb +numpy_formathandler.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/numpy_formathandler.cpython-39-darwin.so
0x12b137000 - 0x12b13cffb +nones_formathandler.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/nones_formathandler.cpython-39-darwin.so
0x12b28c000 - 0x12b28fff7 +_psutil_posix.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/psutil/_psutil_posix.cpython-39-darwin.so
0x12b4ae000 - 0x12b4b5fff +_psutil_osx.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/psutil/_psutil_osx.cpython-39-darwin.so
0x12d057000 - 0x12d05bff3 +_graphics.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/_graphics.cpython-39-darwin.so
0x12d560000 - 0x12d572ffb +_ribbons.cpython-39-darwin.so (0) /opt/sbgrid/*/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/_ribbons.cpython-39-darwin.so
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0x7fff60ef2000 - 0x7fff60ef4ffe com.apple.OAuth (25 - 25) /System/Library/PrivateFrameworks/OAuth.framework/Versions/A/OAuth
0x7fff6119d000 - 0x7fff611e8ffb com.apple.OTSVG (1.0 - 643.1.5.8) /System/Library/PrivateFrameworks/OTSVG.framework/Versions/A/OTSVG
0x7fff62405000 - 0x7fff62410ff2 com.apple.PerformanceAnalysis (1.243.3 - 243.3) /System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Versions/A/PerformanceAnalysis
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0x7fff625f2000 - 0x7fff625f2ffa com.apple.PhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/PhoneNumbers.framework/Versions/A/PhoneNumbers
0x7fff63eb4000 - 0x7fff63ee4ff7 com.apple.pluginkit.framework (1.0 - 1) /System/Library/PrivateFrameworks/PlugInKit.framework/Versions/A/PlugInKit
0x7fff63f0f000 - 0x7fff63f22ffc com.apple.PowerLog (1.0 - 1) /System/Library/PrivateFrameworks/PowerLog.framework/Versions/A/PowerLog
0x7fff64ba8000 - 0x7fff64bc8ff1 com.apple.proactive.support.ProactiveEventTracker (1.0 - 258.5) /System/Library/PrivateFrameworks/ProactiveEventTracker.framework/Versions/A/ProactiveEventTracker
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0x7fff64d9e000 - 0x7fff64df8ff6 com.apple.ProtectedCloudStorage (1.0 - 1) /System/Library/PrivateFrameworks/ProtectedCloudStorage.framework/Versions/A/ProtectedCloudStorage
0x7fff64df9000 - 0x7fff64e12ffb com.apple.ProtocolBuffer (1 - 274.24.9.16.3) /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff64e4c000 - 0x7fff64ec9fff com.apple.Quagga (1.0 - 1) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff64f24000 - 0x7fff64f27ff4 com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff64f28000 - 0x7fff64f4bff0 com.apple.quicklook.QuickLookSupport (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff64f92000 - 0x7fff6500bff3 com.apple.Rapport (1.9.5 - 195.2) /System/Library/PrivateFrameworks/Rapport.framework/Versions/A/Rapport
0x7fff65272000 - 0x7fff6529bff1 com.apple.RemoteViewServices (2.0 - 148) /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices
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0x7fff66e92000 - 0x7fff66fb9fff com.apple.Sharing (1526.37 - 1526.37) /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing
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0x7fff69f48000 - 0x7fff6a00eff0 com.apple.TextureIO (3.10.9 - 3.10.9) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO
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0x7fff6a4cd000 - 0x7fff6a4d3ffe com.apple.URLFormatting (119 - 119.18) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff6ae65000 - 0x7fff6ae85ffc com.apple.UserManagement (1.0 - 1) /System/Library/PrivateFrameworks/UserManagement.framework/Versions/A/UserManagement
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0x7fff6fa17000 - 0x7fff6fa21fff libChineseTokenizer.dylib (34) /usr/lib/libChineseTokenizer.dylib
0x7fff6fa22000 - 0x7fff6faaafff libCoreStorage.dylib (551.0.1) /usr/lib/libCoreStorage.dylib
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0x7fff6faf5000 - 0x7fff6fcacffb libFosl_dynamic.dylib (100.4) /usr/lib/libFosl_dynamic.dylib
0x7fff6fcd3000 - 0x7fff6fcd9ff3 libIOReport.dylib (54) /usr/lib/libIOReport.dylib
0x7fff6fdbb000 - 0x7fff6fdc2fff libMatch.1.dylib (36) /usr/lib/libMatch.1.dylib
0x7fff6fdf1000 - 0x7fff6fe11ff7 libMobileGestalt.dylib (826.140.5) /usr/lib/libMobileGestalt.dylib
0x7fff6fe91000 - 0x7fff6ff6eff7 libSMC.dylib (20) /usr/lib/libSMC.dylib
0x7fff6ff83000 - 0x7fff6ff84fff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib
0x7fff6ff85000 - 0x7fff70010ff7 libTelephonyUtilDynamic.dylib (5017.1) /usr/lib/libTelephonyUtilDynamic.dylib
0x7fff70011000 - 0x7fff70012fff libThaiTokenizer.dylib (3) /usr/lib/libThaiTokenizer.dylib
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0x7fff70185000 - 0x7fff70185ff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff70186000 - 0x7fff7024affe libboringssl.dylib (283.120.1) /usr/lib/libboringssl.dylib
0x7fff7025c000 - 0x7fff70268fff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib
0x7fff70269000 - 0x7fff702bbfff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib
0x7fff702bc000 - 0x7fff702d1ffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib
0x7fff702d2000 - 0x7fff702d2fff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib
0x7fff702d3000 - 0x7fff702e4fff libcmph.dylib (8) /usr/lib/libcmph.dylib
0x7fff702e5000 - 0x7fff702fcfd7 libcompression.dylib (87.1) /usr/lib/libcompression.dylib
0x7fff705d6000 - 0x7fff705ecff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib
0x7fff705ed000 - 0x7fff705eefff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff70b98000 - 0x7fff70ba3fff libcsfde.dylib (551.0.1) /usr/lib/libcsfde.dylib
0x7fff70bab000 - 0x7fff70c0aff7 libcups.2.dylib (483.9) /usr/lib/libcups.2.dylib
0x7fff70d14000 - 0x7fff70d14fff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib
0x7fff70d15000 - 0x7fff70d2fff7 libexpat.1.dylib (19.60.3) /usr/lib/libexpat.1.dylib
0x7fff70d3d000 - 0x7fff70d3ffff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib
0x7fff70d40000 - 0x7fff70d45f57 libffi.dylib (26) /usr/lib/libffi.dylib
0x7fff70d4e000 - 0x7fff70d53fff libgermantok.dylib (24) /usr/lib/libgermantok.dylib
0x7fff70d54000 - 0x7fff70d5dff7 libheimdal-asn1.dylib (564.140.8) /usr/lib/libheimdal-asn1.dylib
0x7fff70d5e000 - 0x7fff70e4efff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib
0x7fff70e4f000 - 0x7fff710a6fff libicucore.A.dylib (64261.1.1) /usr/lib/libicucore.A.dylib
0x7fff710c0000 - 0x7fff710c1fff liblangid.dylib (133) /usr/lib/liblangid.dylib
0x7fff710c2000 - 0x7fff710daff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff710f2000 - 0x7fff71199ff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib
0x7fff7119a000 - 0x7fff713fcff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff71769000 - 0x7fff71798fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff718c8000 - 0x7fff71d44ff5 libnetwork.dylib (1880.120.5) /usr/lib/libnetwork.dylib
0x7fff71d45000 - 0x7fff71d5cfff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib
0x7fff71de5000 - 0x7fff71e18fde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff71e32000 - 0x7fff71e68fff libpcap.A.dylib (89.120.2) /usr/lib/libpcap.A.dylib
0x7fff71ea8000 - 0x7fff71eb6ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff71eb7000 - 0x7fff71ebaff3 libpmenergy.dylib (214.120.2) /usr/lib/libpmenergy.dylib
0x7fff71ebb000 - 0x7fff71ebdfff libpmsample.dylib (214.120.2) /usr/lib/libpmsample.dylib
0x7fff71eec000 - 0x7fff71f04fff libresolv.9.dylib (67.40.3) /usr/lib/libresolv.9.dylib
0x7fff71f06000 - 0x7fff71f4aff7 libsandbox.1.dylib (1217.141.9) /usr/lib/libsandbox.1.dylib
0x7fff71f5e000 - 0x7fff71f5fff7 libspindump.dylib (281.4) /usr/lib/libspindump.dylib
0x7fff71f60000 - 0x7fff7214aff7 libsqlite3.dylib (308.6) /usr/lib/libsqlite3.dylib
0x7fff722ed000 - 0x7fff7231eff7 libtidy.A.dylib (17.3) /usr/lib/libtidy.A.dylib
0x7fff72340000 - 0x7fff7239aff8 libusrtcp.dylib (1880.120.5) /usr/lib/libusrtcp.dylib
0x7fff7239b000 - 0x7fff7239effb libutil.dylib (57.140.1) /usr/lib/libutil.dylib
0x7fff7239f000 - 0x7fff723acfff libxar.1.dylib (425.7) /usr/lib/libxar.1.dylib
0x7fff723b2000 - 0x7fff72494ff7 libxml2.2.dylib (33.14) /usr/lib/libxml2.2.dylib
0x7fff72498000 - 0x7fff724c0fff libxslt.1.dylib (16.12) /usr/lib/libxslt.1.dylib
0x7fff724c1000 - 0x7fff724d3ff3 libz.1.dylib (76.0.1) /usr/lib/libz.1.dylib
0x7fff72d82000 - 0x7fff72d87ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff72d88000 - 0x7fff72d93fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff72d94000 - 0x7fff72d9bfff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff72d9c000 - 0x7fff72da5ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff72da6000 - 0x7fff72e38fdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib
0x7fff72f45000 - 0x7fff72f85ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff72f86000 - 0x7fff72fbcfff libdyld.dylib (750.7) /usr/lib/system/libdyld.dylib
0x7fff72fbd000 - 0x7fff72fbdffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff72fbe000 - 0x7fff72fcaff3 libkxld.dylib (6153.141.66) /usr/lib/system/libkxld.dylib
0x7fff72fcb000 - 0x7fff72fcbff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib
0x7fff72fcc000 - 0x7fff72fd1ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff72fd2000 - 0x7fff72fd4ff3 libquarantine.dylib (110.40.6) /usr/lib/system/libquarantine.dylib
0x7fff72fd5000 - 0x7fff72fd6ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff72fd7000 - 0x7fff72feeff3 libsystem_asl.dylib (377.60.4) /usr/lib/system/libsystem_asl.dylib
0x7fff72fef000 - 0x7fff72fefff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff72ff0000 - 0x7fff73077fff libsystem_c.dylib (1353.100.4) /usr/lib/system/libsystem_c.dylib
0x7fff73078000 - 0x7fff7307bffb libsystem_configuration.dylib (1061.141.2) /usr/lib/system/libsystem_configuration.dylib
0x7fff7307c000 - 0x7fff7307ffff libsystem_coreservices.dylib (114.1) /usr/lib/system/libsystem_coreservices.dylib
0x7fff73080000 - 0x7fff73088fff libsystem_darwin.dylib (1353.100.4) /usr/lib/system/libsystem_darwin.dylib
0x7fff73089000 - 0x7fff73090fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff73091000 - 0x7fff73092ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff73093000 - 0x7fff730e0ff7 libsystem_info.dylib (538.1) /usr/lib/system/libsystem_info.dylib
0x7fff730e1000 - 0x7fff7310dff7 libsystem_kernel.dylib (6153.141.66) /usr/lib/system/libsystem_kernel.dylib
0x7fff73156000 - 0x7fff7317dfff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff7317e000 - 0x7fff7318bffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff7318c000 - 0x7fff73195ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff7319f000 - 0x7fff731a9fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff731aa000 - 0x7fff731aeff3 libsystem_sandbox.dylib (1217.141.9) /usr/lib/system/libsystem_sandbox.dylib
0x7fff731af000 - 0x7fff731b1fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff731b2000 - 0x7fff731b9ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff731ba000 - 0x7fff731d0ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff731d2000 - 0x7fff731d7ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff731d8000 - 0x7fff7320dffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 3
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 21770826
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=2.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.9G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 1408K 2
CG image 364K 16
CoreAnimation 8336K 102
CoreGraphics 8K 1
CoreImage 24K 1
CoreUI image data 3148K 28
Dispatch continuations 24.0M 1
Foundation 24K 2
Kernel Alloc Once 8K 1
MALLOC 1.2G 155
MALLOC guard page 48K 10
MALLOC_MEDIUM (reserved) 1.2G 12 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 108K 27
Stack 156.7M 28
Stack Guard 56.0M 1
VM_ALLOCATE 200.2M 170
VM_ALLOCATE (reserved) 96.0M 1 reserved VM address space (unallocated)
__DATA 73.7M 607
__DATA_CONST 176K 9
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 422.3M 194
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 629.1M 573
__UNICODE 564K 1
mapped file 116.9M 50
shared memory 2836K 22
=========== ======= =======
TOTAL 4.2G 2029
TOTAL, minus reserved VM space 2.9G 2029
===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/meghnagupta/Downloads/cryosparc_P20_J1179_class_00_00042_volume_sharp.mrc
Opened cryosparc_P20_J1179_class_00_00042_volume_sharp.mrc as #1, grid size
128,128,128, pixel 2.55, shown at level 0.759, step 1, values float32
> volume #1 level 1.322
> open
> /Users/meghnagupta/Dropbox/AQP4_manuscript_personal/Modeling/AQP4_with_Fab186/Model_building/AQP4_tetramer_alone_in_AQP4-Fab186_Gaussian.pdb
Chain information for AQP4_tetramer_alone_in_AQP4-Fab186_Gaussian.pdb #2
---
Chain | Description
A | No description available
> open
> /Users/meghnagupta/Dropbox/AQP4_manuscript_personal/Modeling/AQP4_with_Fab186/Model_building/Fab186_placed_in_gaussian.pdb
Summary of feedback from opening
/Users/meghnagupta/Dropbox/AQP4_manuscript_personal/Modeling/AQP4_with_Fab186/Model_building/Fab186_placed_in_gaussian.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 33
LEU A 53 1 21
Start residue of secondary structure not found: HELIX 2 2 GLY A 54 THR A 56 1
3
Start residue of secondary structure not found: HELIX 3 3 MET A 70 SER A 92 1
23
Start residue of secondary structure not found: HELIX 4 4 PRO A 98 CYS A 106 1
9
Start residue of secondary structure not found: HELIX 5 5 ILE A 112 VAL A 136
1 25
End residue of secondary structure not found: HELIX 6 6 PRO A 139 VAL A 142 1
4
Start residue of secondary structure not found: HELIX 7 7 ALA A 156 SER A 177
1 22
Start residue of secondary structure not found: HELIX 8 8 ILE A 189 THR A 208
1 20
Start residue of secondary structure not found: HELIX 9 9 PRO A 214 MET A 224
1 11
Start residue of secondary structure not found: HELIX 10 10 HIS A 230 TYR A
233 1 4
Start residue of secondary structure not found: HELIX 11 11 TRP A 234 PHE A
252 1 19
5 messages similar to the above omitted
End residue of secondary structure not found: HELIX 17 17 PRO A 139 VAL A 142
1 4
Start residue of secondary structure not found: HELIX 18 18 ALA A 156 SER A
177 1 22
Start residue of secondary structure not found: HELIX 19 19 ILE A 189 THR A
208 1 20
Start residue of secondary structure not found: HELIX 20 20 PRO A 214 MET A
224 1 11
Start residue of secondary structure not found: HELIX 21 21 HIS A 230 TYR A
233 1 4
Start residue of secondary structure not found: HELIX 22 22 TRP A 234 PHE A
252 1 19
5 messages similar to the above omitted
End residue of secondary structure not found: HELIX 28 28 PRO A 139 VAL A 142
1 4
Start residue of secondary structure not found: HELIX 29 29 ALA A 156 SER A
177 1 22
Start residue of secondary structure not found: HELIX 30 30 ILE A 189 THR A
208 1 20
Start residue of secondary structure not found: HELIX 31 31 PRO A 214 MET A
224 1 11
Start residue of secondary structure not found: HELIX 32 32 HIS A 230 TYR A
233 1 4
Start residue of secondary structure not found: HELIX 33 33 TRP A 234 PHE A
252 1 19
5 messages similar to the above omitted
End residue of secondary structure not found: HELIX 39 39 PRO A 139 VAL A 142
1 4
Start residue of secondary structure not found: HELIX 40 40 ALA A 156 SER A
177 1 22
Start residue of secondary structure not found: HELIX 41 41 ILE A 189 THR A
208 1 20
Start residue of secondary structure not found: HELIX 42 42 PRO A 214 MET A
224 1 11
Start residue of secondary structure not found: HELIX 43 43 HIS A 230 TYR A
233 1 4
Start residue of secondary structure not found: HELIX 44 44 TRP A 234 PHE A
252 1 19
44 messages similar to the above omitted
Chain information for Fab186_placed_in_gaussian.pdb
---
Chain | Description
3.1/A | No description available
3.2/A | No description available
> open
> /Users/meghnagupta/Dropbox/AQP4_manuscript_personal/Modeling/AQP4_with_Fab186/Model_building/cryosparc_P20_J1200_009_volume_map.mrc
Opened cryosparc_P20_J1200_009_volume_map.mrc as #4, grid size 440,440,440,
pixel 0.834, shown at level 0.0942, step 2, values float32
> close #1
> volume #4 step 1
> volume #4 level 0.281
> lighting soft
> volume #4 color silver
> set bgColor white
> vop gaussian #4 sdev 2.5
Opened cryosparc_P20_J1200_009_volume_map.mrc gaussian as #1, grid size
440,440,440, pixel 0.834, shown at step 1, values float32
> volume #1 color #b2ffff2c
> close #1
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/meghnagupta/Dropbox/AQP4_manuscript_personal/Modeling/AQP4_with_Fab186/Model_building/AQP4_tetramer_alone_in_AQP4-Fab186_Gaussian.pdb
Chain information for AQP4_tetramer_alone_in_AQP4-Fab186_Gaussian.pdb #1
---
Chain | Description
A | No description available
> open
> /Users/meghnagupta/Dropbox/AQP4_manuscript_personal/Modeling/AQP4_with_Fab186/Model_building/Fab186_placed_in_gaussian.pdb
Chain information for Fab186_placed_in_gaussian.pdb
---
Chain | Description
2.1/A | No description available
2.2/A | No description available
> open
> /Users/meghnagupta/Dropbox/AQP4_manuscript_personal/Modeling/AQP4_with_Fab186/Model_building/cryosparc_P20_J1200_009_volume_map.mrc
Opened cryosparc_P20_J1200_009_volume_map.mrc as #3, grid size 440,440,440,
pixel 0.834, shown at level 0.0942, step 2, values float32
OpenGL version: 4.1 ATI-3.10.23
OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac19,2
Processor Name: 6-Core Intel Core i7
Processor Speed: 3.2 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 12 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
Boot ROM Version: 1731.140.1.0.0
SMC Version (system): 2.47f3
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H2026)
Kernel Version: Darwin 19.6.0
Time since boot: 27 days 10:28
Graphics/Displays:
Radeon Pro 560X:
Chipset Model: Radeon Pro 560X
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x67ef
Revision ID: 0x00c2
ROM Revision: 113-C981AA-042
VBIOS Version: 113-C9819A1X-009
EFI Driver Version: 01.B1.042
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: 4096 x 2304 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.18.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.4
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → UI |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in color button callback |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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Code was made more robust on 7/12/22, so may be fixed.