Opened 3 years ago
Closed 3 years ago
#7635 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Windows-10-10.0.19043
ChimeraX Version: 1.3rc202111060828 (2021-11-06 08:28:15 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line Windows fatal exception: code 0x8001010e
973 in _bootstrap_innerWindows fatal exception: code 0x8001010e
File "C:\Windows fatal exception: code 0x8001010e
ProWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e
Windows fatal exception: gr
Windows fatal exception: code 0x8001010e
code 0xWindows fatal exception: 8001010ecode 0xam
8001010eWindows fatal exception:
code 0xWindows fatal exception: Fcode 0x8001010e
iWindows fatal exception: 8001010ecode 0xle
8001010eWindows fatal exception:
sWindows fatal exception: code 0x8001010e\Ccode 0x8001010e
hWindows fatal exception: im
code 0xWindows fatal exception: eraX 1code 0x8001010e8001010e
Windows fatal exception: Windows fatal exception: .3code 0x8001010ecode 0x
rc8001010e2
0Windows fatal exception: code 0x28001010e
11Windows fatal exception: code 0x18001010e
06Windows fatal exception: code 0x08001010e
82Windows fatal exception: code 0x8001010e8\
bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f0Windows fatal exception: code 0x (most recent call first):
8001010e
File "Windows fatal exception: code 0xC:8001010e
\Windows fatal exception: code 0xPr8001010e
oWindows fatal exception: code 0xgr8001010e
aWindows fatal exception: code 0xm 8001010e
FWindows fatal exception: code 0xil8001010e
eWindows fatal exception: code 0xs8001010e
\CWindows fatal exception: code 0xh8001010e
imWindows fatal exception: code 0xe8001010e
rWindows fatal exception: code 0xa8001010e
XWindows fatal exception: code 0x 8001010e
1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py"Windows fatal exception: code 0x, line 9108001010e
in rWindows fatal exception: code 0xun8001010e
Windows fatal exception: code 0x File "8001010e
CWindows fatal exception: code 0x:\8001010e
PWindows fatal exception: code 0xro8001010e
gWindows fatal exception: code 0xra8001010e
mWindows fatal exception: code 0x F8001010e
iWindows fatal exception: code 0xle8001010e
sWindows fatal exception: code 0x\C8001010e
hWindows fatal exception: code 0xim8001010e
eWindows fatal exception: code 0xra8001010e
X 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimWindows fatal exception: code 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3rWindows fatal exception: ccode 0x28001010e
0Windows fatal exception: 2code 0x18001010e1
1Windows fatal exception: 0code 0x68001010e0
8Windows fatal exception: 2code 0x88001010e\
bWindows fatal exception: icode 0xn8001010e\
lWindows fatal exception: icode 0xb8001010e\
tWindows fatal exception: hcode 0xr8001010ee
aWindows fatal exception: dcode 0xi8001010en
gWindows fatal exception: .pcode 0x8001010ey"
, line 930 in _bootstrap
Thread 0x000052dc (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.pyWindows fatal exception: code 0x", line 114 in worker8001010e
Windows fatal exception: code 0x File "8001010e
CWindows fatal exception: :\code 0x8001010ePr
oWindows fatal exception: grcode 0x8001010eam
Windows fatal exception: Ficode 0xle8001010es\
CWindows fatal exception: hcode 0xim8001010eer
aWindows fatal exception: X code 0x1.8001010e3r
cWindows fatal exception: 20code 0x218001010e11
0Windows fatal exception: 6code 0x08001010e8
2Windows fatal exception: 8\code 0x8001010ebi
nWindows fatal exception: \lcode 0x8001010eib
\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000016a8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910Windows fatal exception: code 0x in 8001010e
runWindows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: code 0xC8001010eh
imWindows fatal exception: code 0x8001010e
eraXWindows fatal exception: code 0x8001010e
1.3rWindows fatal exception: code 0xc8001010e2
02Windows fatal exception: 1code 0x18001010e1
06Windows fatal exception: 0code 0x88001010e2
8\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003420 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChiWindows fatal exception: code 0xme8001010e
raWindows fatal exception: code 0xX 8001010e
1.Windows fatal exception: code 0x3r8001010e
c2Windows fatal exception: 0code 0x28001010e1
11Windows fatal exception: 0code 0x68001010e0
8Windows fatal exception: 2code 0x88001010e\
bWindows fatal exception: icode 0xn8001010e\
lWindows fatal exception: icode 0xb8001010e\
tWindows fatal exception: hrecode 0x8001010e
adWindows fatal exception: incode 0xg.8001010epy
", line Windows fatal exception: 930 in code 0x_b8001010eoo
tstrap
Thread 0x0000096c (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000048c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\binWindows fatal exception: code 0x\l8001010e
ib\Windows fatal exception: code 0xmu8001010e
ltWindows fatal exception: code 0xip8001010e
roWindows fatal exception: code 0xce8001010e
ssWindows fatal exception: code 0xin8001010e
g\pWindows fatal exception: code 0xoo8001010e
l.Windows fatal exception: code 0xp8001010e
y"Windows fatal exception: code 0x, line 1148001010e
in wWindows fatal exception: code 0xo8001010e
rkWindows fatal exception: code 0xe8001010e
r
Windows fatal exception: code 0x File 8001010e
"C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001c70 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program FileWindows fatal exception: code 0xs8001010e\
ChiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3rWindows fatal exception: ccode 0x28001010e0
2Windows fatal exception: 1code 0x18001010e1
0Windows fatal exception: 6code 0x08001010e8
2Windows fatal exception: 8code 0x\8001010eb
iWindows fatal exception: ncode 0x\8001010el
iWindows fatal exception: bcode 0x\8001010et
hWindows fatal exception: rcode 0xe8001010ea
dWindows fatal exception: icode 0xn8001010eg
.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000038e8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in initWindows fatal exception: code 0x
File 8001010e
"C:Windows fatal exception: code 0x\P8001010e
roWindows fatal exception: code 0xgr8001010e
amWindows fatal exception: code 0x F8001010e
ileWindows fatal exception: code 0xs\8001010e
CWindows fatal exception: hicode 0xme8001010era
XWindows fatal exception: 1code 0x.38001010erc
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e20
2Windows fatal exception: code 0x1118001010e
06Windows fatal exception: 08code 0x8001010e28
\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Windows fatal exception: code 0xPr8001010e
ogWindows fatal exception: code 0xra8001010e
m Windows fatal exception: code 0xFi8001010e
lWindows fatal exception: code 0xes8001010e
\Windows fatal exception: code 0xCh8001010e
Windows fatal exception: code 0x8001010e
iWindows fatal exception: code 0xm8001010e
erWindows fatal exception: code 0xaX 1.38001010e
rcWindows fatal exception: 20code 0x8001010e
Windows fatal exception: 21code 0x8001010e11
0Windows fatal exception: 60code 0x8001010e82
8\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_taskWindows fatal exception: code 0xs
8001010e
File "Windows fatal exception: code 0xC:8001010e
\Windows fatal exception: code 0xPr8001010e
ogWindows fatal exception: code 0xra8001010e
mWindows fatal exception: code 0x F8001010e
iWindows fatal exception: code 0xle8001010e
sWindows fatal exception: code 0x\C8001010e
hiWindows fatal exception: code 0xme8001010e
raWindows fatal exception: code 0x8001010e
X Windows fatal exception: code 0x1.8001010e
3Windows fatal exception: code 0xrc8001010e
202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\biWindows fatal exception: code 0xn\8001010e
liWindows fatal exception: code 0xb\8001010e
muWindows fatal exception: code 0xlt8001010e
ipWindows fatal exception: rcode 0xo8001010ec
esWindows fatal exception: scode 0xi8001010en
g\Windows fatal exception: pcode 0xo8001010eo
lWindows fatal exception: .code 0xp8001010ey
"Windows fatal exception: , line code 0x4998001010e in
_Windows fatal exception: wcode 0xa8001010ei
tWindows fatal exception: _code 0xf8001010eo
r_Windows fatal exception: ucode 0xp8001010edate
s
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rcWindows fatal exception: code 0x208001010e
211Windows fatal exception: code 0x108001010e
6Windows fatal exception: code 0x088001010e
2Windows fatal exception: code 0x8\8001010e
bWindows fatal exception: code 0xin8001010e
\Windows fatal exception: code 0xli8001010e
bWindows fatal exception: code 0x\th8001010e
rWindows fatal exception: code 0xea8001010e
dWindows fatal exception: code 0xin8001010e
gWindows fatal exception: code 0x.p8001010e
y"Windows fatal exception: code 0x, line 910 in 8001010e
run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052dc (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc2021110Windows fatal exception: code 0x608001010e
82Windows fatal exception: code 0x8\8001010e
biWindows fatal exception: code 0xn\8001010e
lWindows fatal exception: code 0xib8001010e
\Windows fatal exception: code 0xthr8001010e
eWindows fatal exception: code 0xad8001010e
iWindows fatal exception: code 0xng8001010e
.Windows fatal exception: code 0xpy8001010e
"Windows fatal exception: code 0x, line 9738001010e
in Windows fatal exception: code 0x_b8001010e
oWindows fatal exception: code 0xot8001010e
strap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000016a8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003420 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line Windows fatal exception: code 0x8001010e
114Windows fatal exception: in code 0xw8001010eo
rWindows fatal exception: kcode 0xe8001010er
Windows fatal exception: File code 0x"8001010eC
:Windows fatal exception: \code 0xP8001010er
oWindows fatal exception: gcode 0xr8001010ea
mWindows fatal exception: code 0xF8001010ei
lWindows fatal exception: ecode 0xs8001010e\
CWindows fatal exception: hcode 0xi8001010em
eWindows fatal exception: rcode 0xa8001010eX
Windows fatal exception: 1code 0x.8001010e3
rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000096c (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threadiWindows fatal exception: code 0x8001010e
nWindows fatal exception: code 0xg.8001010e
pyWindows fatal exception: code 0x", line 8001010e
910Windows fatal exception: in rcode 0xun8001010e
File
"Windows fatal exception: C:code 0x\P8001010ero
gWindows fatal exception: racode 0xm 8001010eFi
lWindows fatal exception: escode 0x\C8001010ehiWindows fatal exception: code 0x8001010e
mWindows fatal exception: er
code 0x8001010eaXWindows fatal exception: code 0x
8001010e Windows fatal exception: 1
.Windows fatal exception: 3code 0xrcode 0xc8001010e28001010e0
2
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
11Windows fatal exception: code 0x108001010e
6Windows fatal exception: code 0x088001010e
2Windows fatal exception: 8\code 0x8001010ebi
n\Windows fatal exception: code 0xli8001010e
bWindows fatal exception: \tcode 0x8001010ehr
eWindows fatal exception: adcode 0x8001010ein
g.py", line 973 in _bootWindows fatal exception: code 0xs8001010et
raWindows fatal exception: pcode 0x_8001010ei
nnWindows fatal exception: ecode 0xr8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
PWindows fatal exception: rcode 0xo8001010eg
rWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0xC8001010ehWindows fatal exception: code 0x
8001010eim
Windows fatal exception: code 0xe8001010er
aXWindows fatal exception: code 0xWindows fatal exception: code 0x 18001010e
8001010e
.Windows fatal exception: 3code 0xr8001010ec
20Windows fatal exception: code 0x218001010e
11Windows fatal exception: code 0x06Windows fatal exception: code 0x8001010e088001010e
Windows fatal exception: Windows fatal exception: code 0x8001010e
28\Windows fatal exception: code 0x8001010ebicode 0x8001010e
n\liWindows fatal exception: code 0x8001010e
bWindows fatal exception: code 0x8001010e
\Windows fatal exception: code 0x8001010e
tWindows fatal exception: code 0xhr
8001010eWindows fatal exception: code 0x
ea8001010e
dWindows fatal exception: iWindows fatal exception: code 0xngcode 0x8001010e8001010e
.pyWindows fatal exception: code 0x
", line Windows fatal exception: code 0x8001010e
930 in Windows fatal exception: code 0x8001010e_b8001010e
Windows fatal exception: oocode 0x8001010ets
tWindows fatal exception: code 0xra8001010e
pWindows fatal exception: code 0x
8001010e
Thread 0xWindows fatal exception: code 0x000048c8 (most recent call first):
8001010e
File "C:\Program Files\ChimeraX 1.3rc20211106082Windows fatal exception: code 0x8\8001010ebi
n\Windows fatal exception: licode 0xb\8001010emul
tiWindows fatal exception: pcode 0xr8001010eWindows fatal exception: code 0x8001010e
oWindows fatal exception: ce
code 0xWindows fatal exception: 8001010e
ssWindows fatal exception: code 0xcode 0x8001010eing\pool8001010e
Windows fatal exception: .Windows fatal exception: code 0xcode 0x8001010e8001010e
pWindows fatal exception: ycode 0x"8001010e, line
Windows fatal exception: Windows fatal exception: 114code 0x in 8001010ew
code 0xWindows fatal exception: code 0x8001010e8001010eo
Windows fatal exception: rkcode 0xWindows fatal exception: ecode 0xr8001010e
File 8001010e
"CWindows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x:\
8001010eWindows fatal exception: Pr
ocode 0xWindows fatal exception: gr8001010ea
mWindows fatal exception: code 0xFcode 0x8001010e8001010e
iWindows fatal exception: leWindows fatal exception: scode 0x\8001010eC
hcode 0x8001010eim
eraX 1.3rWindows fatal exception: code 0xc28001010e
02Windows fatal exception: code 0x18001010e
11Windows fatal exception: code 0x08001010e
60Windows fatal exception: code 0x88001010e
28Windows fatal exception: code 0x\8001010e
biWindows fatal exception: code 0xn8001010e
\lWindows fatal exception: code 0xib8001010e
\tWindows fatal exception: code 0xhWindows fatal exception: code 0x8001010e
reWindows fatal exception: acode 0xd8001010e
8001010e
Windows fatal exception: ingcode 0x.Windows fatal exception: pcode 0xy8001010e"
, line Windows fatal exception: 9108001010e in
rWindows fatal exception: ucode 0xn8001010e
code 0x File 8001010e"
C
:Windows fatal exception: \code 0xP8001010ero
gWindows fatal exception: Windows fatal exception: code 0xr8001010ea
mWindows fatal exception: code 0x8001010e
code 0x8001010eF
ilWindows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x
8001010eWindows fatal exception:
code 0xes8001010e\Windows fatal exception: Ccode 0x
8001010ehi
mWindows fatal exception: ecode 0xrWindows fatal exception: a8001010eXcode 0x
18001010e.
3Windows fatal exception: rWindows fatal exception: ccode 0x2code 0x08001010e2
18001010e1
1Windows fatal exception: 0Windows fatal exception: 6code 0x08001010e8code 0x2
88001010e\
bWindows fatal exception: iWindows fatal exception: ncode 0x\8001010el
icode 0x8001010eb
\tWindows fatal exception: code 0xhWindows fatal exception: 8001010e
recode 0x8001010eWindows fatal exception:
code 0xWindows fatal exception: ad8001010e
code 0xWindows fatal exception: 8001010ecode 0x
8001010eiWindows fatal exception: ncode 0x
8001010eg
.pWindows fatal exception: ycode 0x"8001010e, line
973 in Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x
8001010eWindows fatal exception:
code 0x_Windows fatal exception: bcode 0x8001010e8001010e
Windows fatal exception: Windows fatal exception: code 0xcode 0xo8001010eo
tWindows fatal exception: scode 0xt8001010er
8001010eWindows fatal exception: acode 0xp8001010e_
iWindows fatal exception: ncode 0xn8001010ee
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010er
File 8001010e
"Windows fatal exception: C:code 0x\P8001010erWindows fatal exception:
code 0xo8001010eg
rWindows fatal exception: acode 0xWindows fatal exception: code 0xm8001010e8001010e
Windows fatal exception: code 0xFWindows fatal exception: code 0x8001010e8001010e
Windows fatal exception: Windows fatal exception: icode 0xl8001010ecode 0x
8001010eWindows fatal exception:
code 0xe8001010eWindows fatal exception:
code 0xWindows fatal exception: 8001010ecode 0xs8001010e\
CWindows fatal exception:
hWindows fatal exception: icode 0xcode 0x8001010e
me8001010e
rWindows fatal exception: code 0x8001010eaX
1Windows fatal exception: code 0x.38001010e
rcWindows fatal exception: code 0x28001010e
02Windows fatal exception: code 0x18001010e1
10Windows fatal exception: code 0x68001010e
0828\bin\lib\threadinWindows fatal exception: code 0xg8001010e
Windows fatal exception: Windows fatal exception: .code 0xcode 0x8001010ep
y"8001010e
Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x
8001010eWindows fatal exception: , line 930
in Windows fatal exception: _code 0xbcode 0xo8001010eo8001010et
sWindows fatal exception: tcode 0xr
a8001010ep
Windows fatal exception: Windows fatal exception:
code 0xThread 0x8001010e00001c70code 0x (most recent call first):
8001010e File
"Windows fatal exception: C
:Windows fatal exception: \code 0xP8001010ercode 0x8001010e
oWindows fatal exception: Windows fatal exception: code 0xgrcode 0xa8001010em8001010e
F
iWindows fatal exception: lcode 0xeWindows fatal exception: s8001010e\
CWindows fatal exception: hcode 0xicode 0xm8001010ee8001010e
Windows fatal exception: Windows fatal exception: code 0xracode 0xX8001010e 8001010e
Windows fatal exception: 1.Windows fatal exception: 3code 0x8001010ecode 0x
rc8001010e2Windows fatal exception: 0
2code 0x18001010e1
1060828\bin\lib\mulWindows fatal exception: tcode 0xi8001010ep
roWindows fatal exception: ccode 0xe8001010es
sWindows fatal exception: icode 0xn8001010eg
\Windows fatal exception: pcode 0xo8001010eo
lWindows fatal exception: .code 0xp8001010ey
Windows fatal exception: Windows fatal exception: "code 0xcode 0x8001010e, line
114 in 8001010e
Windows fatal exception: code 0xWindows fatal exception: code 0xw8001010e8001010e
oWindows fatal exception:
Windows fatal exception: rkcode 0xecode 0x8001010e8001010e
rWindows fatal exception:
code 0x File 8001010e"
CWindows fatal exception: :code 0xWindows fatal exception: code 0x8001010e\P8001010er
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010eog8001010e
Windows fatal exception: racode 0x8001010eWindows fatal exception: code 0xm
8001010eWindows fatal exception: Fi
code 0x8001010el
esWindows fatal exception: \code 0xC8001010eh
iWindows fatal exception: code 0xmeWindows fatal exception: code 0x8001010e8001010e
rWindows fatal exception: Windows fatal exception: code 0xcode 0xaX8001010e
18001010e
.Windows fatal exception: code 0x3r8001010eWindows fatal exception:
c2Windows fatal exception: code 0xcode 0x8001010e8001010e
0Windows fatal exception:
2Windows fatal exception: 11code 0x18001010e0code 0x8001010e
60Windows fatal exception: code 0x
8001010e8Windows fatal exception: 2code 0x88001010e
\bWindows fatal exception: i
code 0x8001010eWindows fatal exception: code 0xn8001010e
\Windows fatal exception: lcode 0x
Windows fatal exception: code 0x8001010e
ib8001010e\
tWindows fatal exception: hcode 0xr8001010ee
aWindows fatal exception: dWindows fatal exception: code 0xcode 0x8001010e8001010e
Windows fatal exception: Windows fatal exception: code 0xincode 0xg8001010e.
py8001010e
", line Windows fatal exception: code 0x910 in 8001010e
Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e8001010eru
n
Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x
8001010e
[lots of this deleted]
Thread 0x00001c70 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000038e8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052dc (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000016a8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003420 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000096c (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000048c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001c70 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000038e8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052dc (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000016a8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003420 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000096c (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000048c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001c70 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000038e8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052dc (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000016a8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003420 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000096c (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000048c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001c70 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000038e8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052dc (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000016a8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003420 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000096c (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000048c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001c70 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000038e8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052f0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052dc (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000016a8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003420 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000096c (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000048c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001c70 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000038e8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\core\triggerset.py", line 187 in activate
Windows fatal exception: access violation
===== Log before crash start =====
> open D:\Lab_Roh\Dicer\cryosparc_P6_J39_005_volume_map.mrc format mrc
Opened cryosparc_P6_J39_005_volume_map.mrc as #1, grid size 256,256,256, pixel
0.87, shown at level 0.0467, step 1, values float32
> close session
> open D:\Lab_Roh\Dicer\maps\cryosparc_P1_J1383_004_volume_map.mrc format mrc
Opened cryosparc_P1_J1383_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0759, step 1, values float32
> close session
> open D:\Lab_Roh\Dicer\maps\20220908_Dicer_maps.cxs format session
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #1, grid size
300,300,300, pixel 1.1, shown at level 0.12, step 1, values float32
Opened cryosparc_P1_J805_007_volume_map.mrc as #3, grid size 300,300,300,
pixel 1.1, shown at step 1, values float32
Opened cryosparc_P1_J770_004_volume_map_sharp.mrc as #4, grid size
280,280,280, pixel 0.849, shown at level 0.158, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 0 as #6.1, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 1 as #6.2, grid size
300,300,300, pixel 1.1, shown at level 0.0887, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 2 as #6.3, grid size
300,300,300, pixel 1.1, shown at level 0.0823, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 3 as #6.4, grid size
300,300,300, pixel 1.1, shown at level 0.0815, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 4 as #6.5, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 5 as #6.6, grid size
300,300,300, pixel 1.1, shown at level 0.0967, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 6 as #6.7, grid size
300,300,300, pixel 1.1, shown at level 0.127, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 7 as #6.8, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 8 as #6.9, grid size
300,300,300, pixel 1.1, shown at level 0.145, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 9 as #6.10, grid size
300,300,300, pixel 1.1, shown at level 0.0841, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 10 as #6.11, grid size
300,300,300, pixel 1.1, shown at level 0.144, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 11 as #6.12, grid size
300,300,300, pixel 1.1, shown at level 0.132, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 12 as #6.13, grid size
300,300,300, pixel 1.1, shown at level 0.109, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 13 as #6.14, grid size
300,300,300, pixel 1.1, shown at level 0.19, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 14 as #6.15, grid size
300,300,300, pixel 1.1, shown at level 0.0799, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #7, grid size
300,300,300, pixel 1.1, shown at level 0.0923, step 1, values float32
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.101, step 1, values float32
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc z flip as #9, grid size
256,256,256, pixel 1.08, shown at level 0.112, step 1, values float32
Opened cryosparc_P1_J1261_002_volume_map.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0102, step 1, values float32
Opened cryosparc_P1_J1261_002_volume_map_sharp.mrc as #11, grid size
256,256,256, pixel 1.08, shown at level 0.0546, step 1, values float32
Opened cryosparc_P1_J1265_002_volume_map.mrc as #12, grid size 256,256,256,
pixel 1.08, shown at level 0.0884, step 1, values float32
Opened cryosparc_P1_J1299_004_volume_map.mrc as #14, grid size 256,256,256,
pixel 1.08, shown at level 0.0659, step 1, values float32
Opened cryosparc_P1_J805_007_volume_map_sharp.mrc as #15, grid size
300,300,300, pixel 1.1, shown at level 0.107, step 1, values float32
Opened cryosparc_P1_J1321_005_volume_map.mrc as #16, grid size 256,256,256,
pixel 1.08, shown at level 0.0596, step 1, values float32
Opened cryosparc_P1_J1325_006_volume_map.mrc as #17, grid size 256,256,256,
pixel 1.08, shown at level 0.0563, step 1, values float32
Opened cryosparc_P1_J1325_006_volume_map.mrc z flip as #18, grid size
256,256,256, pixel 1.08, shown at level 0.051, step 1, values float32
Opened cryosparc_P1_J1342_004_volume_map.mrc as #19, grid size 256,256,256,
pixel 1.08, shown at level 0.0675, step 1, values float32
Opened cryosparc_P1_J1370_004_volume_map.mrc as #20, grid size 256,256,256,
pixel 1.08, shown at level 0.0426, step 1, values float32
Opened cryosparc_P1_J1370_004_volume_map.mrc z flip as #21, grid size
256,256,256, pixel 1.08, shown at level 0.109, step 1, values float32
Opened cryosparc_P1_J1355_003_volume_map.mrc as #22, grid size 256,256,256,
pixel 1.08, shown at level 0.0603, step 1, values float32
Opened cryosparc_P1_J1383_004_volume_map.mrc as #23, grid size 256,256,256,
pixel 1.08, shown at level 0.0488, step 1, values float32
Opened cryosparc_P1_J1390_004_volume_map.mrc as #24, grid size 256,256,256,
pixel 1.08, shown at level 0.0682, step 1, values float32
opened ChimeraX session
> close session
> open D:\Lab_Roh\Dicer\maps\20220914_Dicer_maps.cxs format session
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #1, grid size
300,300,300, pixel 1.1, shown at level 0.12, step 1, values float32
Opened cryosparc_P1_J805_007_volume_map.mrc as #3, grid size 300,300,300,
pixel 1.1, shown at step 1, values float32
Opened cryosparc_P1_J770_004_volume_map_sharp.mrc as #4, grid size
280,280,280, pixel 0.849, shown at level 0.158, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 0 as #6.1, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 1 as #6.2, grid size
300,300,300, pixel 1.1, shown at level 0.0887, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 2 as #6.3, grid size
300,300,300, pixel 1.1, shown at level 0.0823, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 3 as #6.4, grid size
300,300,300, pixel 1.1, shown at level 0.0815, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 4 as #6.5, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 5 as #6.6, grid size
300,300,300, pixel 1.1, shown at level 0.0967, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 6 as #6.7, grid size
300,300,300, pixel 1.1, shown at level 0.127, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 7 as #6.8, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 8 as #6.9, grid size
300,300,300, pixel 1.1, shown at level 0.145, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 9 as #6.10, grid size
300,300,300, pixel 1.1, shown at level 0.0841, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 10 as #6.11, grid size
300,300,300, pixel 1.1, shown at level 0.144, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 11 as #6.12, grid size
300,300,300, pixel 1.1, shown at level 0.132, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 12 as #6.13, grid size
300,300,300, pixel 1.1, shown at level 0.109, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 13 as #6.14, grid size
300,300,300, pixel 1.1, shown at level 0.19, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 14 as #6.15, grid size
300,300,300, pixel 1.1, shown at level 0.0799, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #7, grid size
300,300,300, pixel 1.1, shown at level 0.0923, step 1, values float32
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.101, step 1, values float32
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc z flip as #9, grid size
256,256,256, pixel 1.08, shown at level 0.112, step 1, values float32
Opened cryosparc_P1_J1261_002_volume_map.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0102, step 1, values float32
Opened cryosparc_P1_J1261_002_volume_map_sharp.mrc as #11, grid size
256,256,256, pixel 1.08, shown at level 0.0546, step 1, values float32
Opened cryosparc_P1_J1265_002_volume_map.mrc as #12, grid size 256,256,256,
pixel 1.08, shown at level 0.0884, step 1, values float32
Opened cryosparc_P1_J805_007_volume_map_sharp.mrc as #15, grid size
300,300,300, pixel 1.1, shown at level 0.107, step 1, values float32
Opened cryosparc_P1_J1370_004_volume_map.mrc as #20, grid size 256,256,256,
pixel 1.08, shown at level 0.0914, step 1, values float32
Opened cryosparc_P1_J1383_004_volume_map.mrc as #23, grid size 256,256,256,
pixel 1.08, shown at level 0.0664, step 1, values float32
Opened cryosparc_P1_J1390_004_volume_map.mrc as #24, grid size 256,256,256,
pixel 1.08, shown at level 0.0553, step 1, values float32
Opened cryosparc_P1_J1370_004_volume_map.mrc z flip as #14, grid size
256,256,256, pixel 1.08, shown at level 0.0369, step 1, values float32
Opened cryosparc_P1_J1388_006_volume_map.mrc as #16, grid size 256,256,256,
pixel 1.08, shown at level 0.0636, step 1, values float32
Opened emd_6905(5zal).map as #17, grid size 180,180,180, pixel 1.37, shown at
level 0.0277, step 1, values float32
opened ChimeraX session
> close session
> open D:\Lab_Roh\Dicer\maps\cryosparc_P1_J1383_004_volume_map.mrc format mrc
Opened cryosparc_P1_J1383_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0759, step 1, values float32
> open D:/Lab_Roh/Dicer/maps/emd_6905.map/emd_6905(5zal).map
Opened emd_6905(5zal).map as #2, grid size 180,180,180, pixel 1.37, shown at
level 0.0347, step 1, values float32
> select #2
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,-20.279,0,1,0,-62.494,0,0,1,-3.8524
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.8195,-0.54338,-0.18209,289.82,0.52074,-0.83872,0.15929,71.996,-0.23928,0.035718,0.97029,24.93
> view matrix models
> #2,-0.83565,-0.41301,-0.36209,297.83,0.54443,-0.71013,-0.44645,126.04,-0.072743,-0.57021,0.81827,94.244
> view matrix models
> #2,0.34853,-0.92244,-0.16622,188.93,0.83492,0.38613,-0.39218,-45.941,0.42595,-0.0020975,0.90474,-44.714
> view matrix models
> #2,0.44782,-0.89407,0.0098593,152.36,0.88022,0.44276,0.17082,-125.31,-0.15709,-0.067818,0.98525,25.278
> view matrix models
> #2,-0.23658,-0.87614,-0.42001,285.76,0.8915,-0.36763,0.26472,-41.982,-0.38634,-0.31181,0.86805,96.355
> view matrix models
> #2,-0.26342,-0.79736,-0.54298,294.39,0.96412,-0.23673,-0.12011,-20.562,-0.032767,-0.55514,0.83111,86.008
> view matrix models
> #2,-0.77315,-0.62438,-0.11128,285.26,0.62816,-0.72967,-0.27017,97.036,0.08749,-0.27879,0.95636,23.566
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.77315,-0.62438,-0.11128,313.62,0.62816,-0.72967,-0.27017,189.91,0.08749,-0.27879,0.95636,41.636
> ui tool show "Fit in Map"
Fit map emd_6905(5zal).map in map cryosparc_P1_J1383_004_volume_map.mrc using
58265 points
correlation = 0.9265, correlation about mean = 0.5204, overlap = 414.8
steps = 132, shift = 11.3, angle = 9.04 degrees
Position of emd_6905(5zal).map (#2) relative to
cryosparc_P1_J1383_004_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.67316591 -0.73528989 -0.07871770 321.20553127
0.73111062 -0.64577447 -0.22011957 156.97429129
0.11101781 -0.20572833 0.97229158 26.19016095
Axis 0.00973239 -0.12831286 0.99168598
Axis point 125.24846638 151.71825762 0.00000000
Rotation angle (degrees) 132.32416423
Shift along axis 8.95669368
> open D:/Lab_Roh/Dicer/maps/5zal.cif
5zal.cif title:
Cryo-EM structure of human Dicer and its complexes with a pre-miRNA substrate
[more info...]
Chain information for 5zal.cif #3
---
Chain | Description | UniProt
A | Endoribonuclease Dicer | DICER_HUMAN
B | RISC-loading complex subunit TARBP2 | TRBP2_HUMAN
C | RNA (73-mer) |
Fit molecule 5zal.cif (#3) to map emd_6905(5zal).map (#2) using 12346 atoms
average map value = 0.02464, steps = 252
shifted from previous position = 23.5
rotated from previous position = 48.9 degrees
atoms outside contour = 8455, contour level = 0.03469
Position of 5zal.cif (#3) relative to emd_6905(5zal).map (#2) coordinates:
Matrix rotation and translation
-0.93539423 -0.00961598 0.35347579 187.01661013
-0.09726300 -0.95407477 -0.28333940 290.12675420
0.33996693 -0.29941416 0.89150077 8.56684642
Axis -0.17835666 0.14988686 -0.97248282
Axis point 96.08231239 143.55222800 0.00000000
Rotation angle (degrees) 177.41717524
Shift along axis 1.79941883
> ~select #2
Nothing selected
> select #3
12346 atoms, 12712 bonds, 69 pseudobonds, 1447 residues, 3 models selected
> view matrix models
> #3,0.67443,0.73156,-0.099788,-29.929,-0.6959,0.67499,0.24517,21.133,0.24671,-0.095905,0.96433,-3.1257
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.72666,-0.66924,-0.15517,316.27,0.64742,-0.59155,-0.48053,87.037,0.2298,-0.44964,0.86314,52.402
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.72666,-0.66924,-0.15517,331.68,0.64742,-0.59155,-0.48053,199.27,0.2298,-0.44964,0.86314,62.094
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.77079,-0.59846,-0.21847,336.51,0.61922,-0.62309,-0.47784,206.17,0.14985,-0.5036,0.85085,79.906
> view matrix models
> #3,-0.035566,-0.92959,-0.36687,300.59,0.95618,0.075096,-0.28297,59.032,0.2906,-0.36086,0.88619,41.337
> view matrix models
> #3,-0.3445,-0.93194,-0.11314,309.37,0.87398,-0.27438,-0.40109,124.28,0.34275,-0.23706,0.90902,17.599
> view matrix models
> #3,-0.34232,-0.93459,-0.096736,307.44,0.90856,-0.30301,-0.28759,109.73,0.23947,-0.18634,0.95286,19.411
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.34232,-0.93459,-0.096736,305.58,0.90856,-0.30301,-0.28759,97.384,0.23947,-0.18634,0.95286,11.588
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.77609,-0.62053,-0.11236,325.23,0.61208,-0.69832,-0.37109,190.76,0.1518,-0.35677,0.92178,46.217
> view matrix models
> #3,-0.77621,-0.62431,-0.087937,322.77,0.62772,-0.75228,-0.20011,174.69,0.058779,-0.21053,0.97582,34.364
Fit molecule 5zal.cif (#3) to map emd_6905(5zal).map (#2) using 12346 atoms
average map value = 0.04952, steps = 80
shifted from previous position = 5.63
rotated from previous position = 8.9 degrees
atoms outside contour = 3117, contour level = 0.03469
Position of 5zal.cif (#3) relative to emd_6905(5zal).map (#2) coordinates:
Matrix rotation and translation
0.99999960 -0.00026366 -0.00082285 0.17014790
0.00026352 0.99999992 -0.00017103 -0.02026694
0.00082289 0.00017081 0.99999962 -0.14760788
Axis 0.19404752 -0.93423188 0.29925969
Axis point 182.29409834 0.00000000 204.86343246
Rotation angle (degrees) 0.05046582
Shift along axis 0.00777771
> ~select #3
Nothing selected
> select /C
1234 atoms, 1379 bonds, 61 pseudobonds, 58 residues, 3 models selected
> ui mousemode right "map eraser"
> select #3
12346 atoms, 12712 bonds, 69 pseudobonds, 1447 residues, 3 models selected
> select #4
1 model selected
> hide #!1 models
> hide #!3 models
> volume erase #2 center 142.21,102.18,123.94 radius 40.566 outside true
Opened emd_6905(5zal).map copy as #5, grid size 180,180,180, pixel 1.37, shown
at step 1, values float32
> volume erase #5 center 140.76,161.3,134 radius 40.566
> volume erase #5 center 148.32,152.15,175.38 radius 40.566
> volume erase #5 center 147.14,168.7,111.92 radius 40.566
> volume erase #5 center 158.28,55.901,118.28 radius 40.566
> volume erase #5 center 187.98,154.17,107.44 radius 40.566
> volume #5 step 2
> volume #5 level 0.008213
> show #!1 models
> volume #5 level 0.002749
> hide #!5 models
> show #!5 models
> hide #!1 models
> show #4 models
> volume erase #5 center 98.998,163.79,109.34 radius 40.442
> volume erase #5 center 96.449,159.11,109.45 radius 40.442
> volume erase #5 center 156.45,137.17,142.8 radius 16.276
> volume erase #5 center 124.91,123.84,135.62 radius 3.9456
> volume erase #5 center 131.54,135,100.8 radius 3.9456
> volume erase #5 center 151.91,87.244,165.48 radius 3.9456
> volume erase #5 center 150.05,81.79,161.32 radius 3.9456
> volume erase #5 center 163.07,115.54,156.42 radius 3.9456
> volume erase #5 center 162.01,116.64,156.31 radius 3.9456
> save D:/Lab_Roh/Dicer/maps/20220915_J1383_mask_making.cxs
No map chosen to save
> save D:/Lab_Roh/Dicer/maps/20220915_J1383_mask_RNA.mrc models #5
> close session
> open D:/Lab_Roh/Dicer/maps/20220915_J1383_mask_RNA.mrc
Opened 20220915_J1383_mask_RNA.mrc as #1, grid size 180,180,180, pixel 1.37,
shown at level 1.74e-06, step 1, values float32
> close session
> open D:\Lab_Roh\Dicer\maps\20220915_J1383_mask_making.cxs format session
Opened cryosparc_P1_J1383_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0759, step 1, values float32
Opened emd_6905(5zal).map as #2, grid size 180,180,180, pixel 1.37, shown at
level 0.0347, step 1, values float32
Opened emd_6905(5zal).map copy as #5, grid size 180,180,180, pixel 1.37, shown
at level 0.00275, step 2, values float32
opened ChimeraX session
> show #!1 models
> close session
> open D:\Lab_Roh\Dicer\maps\20220914_Dicer_maps.cxs format session
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #1, grid size
300,300,300, pixel 1.1, shown at level 0.12, step 1, values float32
Opened cryosparc_P1_J805_007_volume_map.mrc as #3, grid size 300,300,300,
pixel 1.1, shown at step 1, values float32
Opened cryosparc_P1_J770_004_volume_map_sharp.mrc as #4, grid size
280,280,280, pixel 0.849, shown at level 0.158, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 0 as #6.1, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 1 as #6.2, grid size
300,300,300, pixel 1.1, shown at level 0.0887, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 2 as #6.3, grid size
300,300,300, pixel 1.1, shown at level 0.0823, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 3 as #6.4, grid size
300,300,300, pixel 1.1, shown at level 0.0815, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 4 as #6.5, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 5 as #6.6, grid size
300,300,300, pixel 1.1, shown at level 0.0967, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 6 as #6.7, grid size
300,300,300, pixel 1.1, shown at level 0.127, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 7 as #6.8, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 8 as #6.9, grid size
300,300,300, pixel 1.1, shown at level 0.145, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 9 as #6.10, grid size
300,300,300, pixel 1.1, shown at level 0.0841, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 10 as #6.11, grid size
300,300,300, pixel 1.1, shown at level 0.144, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 11 as #6.12, grid size
300,300,300, pixel 1.1, shown at level 0.132, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 12 as #6.13, grid size
300,300,300, pixel 1.1, shown at level 0.109, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 13 as #6.14, grid size
300,300,300, pixel 1.1, shown at level 0.19, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 14 as #6.15, grid size
300,300,300, pixel 1.1, shown at level 0.0799, step 1, values float32
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #7, grid size
300,300,300, pixel 1.1, shown at level 0.0923, step 1, values float32
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.101, step 1, values float32
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc z flip as #9, grid size
256,256,256, pixel 1.08, shown at level 0.112, step 1, values float32
Opened cryosparc_P1_J1261_002_volume_map.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0102, step 1, values float32
Opened cryosparc_P1_J1261_002_volume_map_sharp.mrc as #11, grid size
256,256,256, pixel 1.08, shown at level 0.0546, step 1, values float32
Opened cryosparc_P1_J1265_002_volume_map.mrc as #12, grid size 256,256,256,
pixel 1.08, shown at level 0.0884, step 1, values float32
Opened cryosparc_P1_J805_007_volume_map_sharp.mrc as #15, grid size
300,300,300, pixel 1.1, shown at level 0.107, step 1, values float32
Opened cryosparc_P1_J1370_004_volume_map.mrc as #20, grid size 256,256,256,
pixel 1.08, shown at level 0.0914, step 1, values float32
Opened cryosparc_P1_J1383_004_volume_map.mrc as #23, grid size 256,256,256,
pixel 1.08, shown at level 0.0664, step 1, values float32
Opened cryosparc_P1_J1390_004_volume_map.mrc as #24, grid size 256,256,256,
pixel 1.08, shown at level 0.0553, step 1, values float32
Opened cryosparc_P1_J1370_004_volume_map.mrc z flip as #14, grid size
256,256,256, pixel 1.08, shown at level 0.0369, step 1, values float32
Opened cryosparc_P1_J1388_006_volume_map.mrc as #16, grid size 256,256,256,
pixel 1.08, shown at level 0.0636, step 1, values float32
Opened emd_6905(5zal).map as #17, grid size 180,180,180, pixel 1.37, shown at
level 0.0277, step 1, values float32
opened ChimeraX session
> close session
> open D:/Lab_Roh/Dicer/maps/cryosparc_P1_J1370_004_volume_map.mrc
Opened cryosparc_P1_J1370_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0576, step 1, values float32
> open
> D:/Lab_Roh/Dicer/maps/D_9100067514/20220502let7aGCm_IBS_J770_real_space_refined.cif
Summary of feedback from opening
D:/Lab_Roh/Dicer/maps/D_9100067514/20220502let7aGCm_IBS_J770_real_space_refined.cif
---
warnings | Skipping chem_comp category: Missing column 'type' near line 424
Missing entity information. Treating each chain as a separate entity.
Missing first residue in struct_conn "C00001"
Missing first residue in struct_conn "C00002"
Missing first residue in struct_conn "C00003"
Missing first residue in struct_conn "C00004"
Missing first residue in struct_conn "C00005"
204 messages similar to the above omitted
Bad residue range for struct_conf "1" near line 96
Bad residue range for struct_conf "2" near line 97
Bad residue range for struct_conf "3" near line 98
Bad residue range for struct_conf "4" near line 99
Bad residue range for struct_conf "5" near line 100
22 messages similar to the above omitted
Invalid sheet range for struct_sheet_range "A 1" near line 391
Invalid sheet range for struct_sheet_range "A 2" near line 392
Invalid sheet range for struct_sheet_range "B 1" near line 393
Invalid sheet range for struct_sheet_range "B 2" near line 394
Invalid sheet range for struct_sheet_range "C 1" near line 395
6 messages similar to the above omitted
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Skipping chem_comp category: Missing column 'type' near line 7574
Skipping chem_comp category: Missing column 'type' near line 7826
Skipping chem_comp category: Missing column 'type' near line 8111
Skipping chem_comp category: Missing column 'type' near line 8390
Skipping chem_comp category: Missing column 'type' near line 8651
Chain information for 20220502let7aGCm_IBS_J770_real_space_refined.cif #2
---
Chain | Description
A | No description available
C | No description available
> open D:/Lab_Roh/Dicer/maps/D_9100067514/cryosparc_P1_J770_004_volume_map.mrc
Opened cryosparc_P1_J770_004_volume_map.mrc as #3, grid size 280,280,280,
pixel 0.849, shown at level 0.047, step 2, values float32
> open D:/Lab_Roh/Dicer/maps/D_9100068025/cryosparc_P1_J805_007_volume_map.mrc
Opened cryosparc_P1_J805_007_volume_map.mrc as #4, grid size 300,300,300,
pixel 1.1, shown at level 0.0362, step 2, values float32
> hide #!2 models
> hide #!3 models
> ui mousemode right "translate selected models"
> select #4
2 models selected
> view matrix models #4,1,0,0,41.877,0,1,0,48.126,0,0,1,-14.228
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.11087,-0.9935,-0.025606,342.11,-0.98318,-0.11341,0.14313,356.08,-0.14511,0.0093061,-0.98937,313.16
> view matrix models
> #4,-0.91746,0.38809,-0.087466,306.78,0.39468,0.91553,-0.07773,8.9952,0.049912,-0.10584,-0.99313,299.75
> view matrix models
> #4,-0.90802,0.2648,0.32463,260.89,0.38959,0.81863,0.42197,-52.027,-0.15402,0.50963,-0.8465,216.07
> view matrix models
> #4,-0.30854,0.76404,0.56661,50.101,0.92784,0.37296,0.0023402,-6.659,-0.20953,0.52645,-0.82398,219.04
> view matrix models
> #4,-0.78876,0.55049,-0.27353,289.59,0.33477,0.011488,-0.94223,289.81,-0.51555,-0.83476,-0.19335,380.33
> view matrix models
> #4,-0.37001,0.86621,0.33582,79.839,0.84014,0.46628,-0.27704,36.146,-0.39656,0.17963,-0.90026,314.18
> view matrix models
> #4,-0.73794,-0.30641,0.60129,278.32,-0.17579,0.9475,0.26709,43.68,-0.65156,0.0914,-0.75307,346.45
> view matrix models
> #4,-0.91932,-0.30684,0.24636,362.27,-0.35254,0.92036,-0.16926,143.46,-0.1748,-0.24246,-0.95428,351.15
> view matrix models
> #4,-0.73816,-0.62014,0.26559,377.92,-0.65695,0.7503,-0.073952,204.23,-0.15341,-0.22907,-0.96125,346.7
> view matrix models
> #4,-0.75204,-0.6466,0.12783,405.36,-0.65621,0.71632,-0.23722,234.37,0.061823,-0.26228,-0.96301,317.16
> ui mousemode right "translate selected models"
> view matrix models
> #4,-0.75204,-0.6466,0.12783,371.91,-0.65621,0.71632,-0.23722,163.31,0.061823,-0.26228,-0.96301,338.8
> view matrix models
> #4,-0.75204,-0.6466,0.12783,352.64,-0.65621,0.71632,-0.23722,157.84,0.061823,-0.26228,-0.96301,316.17
> view matrix models
> #4,-0.75204,-0.6466,0.12783,350.98,-0.65621,0.71632,-0.23722,165.23,0.061823,-0.26228,-0.96301,315.88
> view matrix models
> #4,-0.75204,-0.6466,0.12783,351.67,-0.65621,0.71632,-0.23722,160.44,0.061823,-0.26228,-0.96301,320.16
> hide #!4 models
> show #!3 models
> view matrix models
> #4,-0.75204,-0.6466,0.12783,365.79,-0.65621,0.71632,-0.23722,259.54,0.061823,-0.26228,-0.96301,325
> show #!4 models
> view matrix models
> #4,-0.75204,-0.6466,0.12783,352,-0.65621,0.71632,-0.23722,160.76,0.061823,-0.26228,-0.96301,318.37
> ~select #4
Nothing selected
> hide #!4 models
> select #3
2 models selected
> view matrix models #3,1,0,0,11.498,0,1,0,86.239,0,0,1,9.2543
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.21334,0.13549,0.96754,-27.742,-0.80009,-0.54411,0.25261,331.76,0.56067,-0.828,-0.0076709,161.35
> view matrix models
> #3,0.5009,-0.35794,-0.78802,204.83,0.46362,-0.65787,0.59351,158.47,-0.73086,-0.66264,-0.16358,309.88
> view matrix models
> #3,0.35682,-0.73248,-0.57979,241.22,-0.73881,-0.60109,0.30471,325.24,-0.5717,0.31963,-0.75564,245.23
> view matrix models
> #3,0.92269,-0.24639,0.29653,14.551,-0.14749,-0.93621,-0.319,370.09,0.35621,0.2506,-0.90017,162.95
> view matrix models
> #3,-0.93073,-0.36568,-0.0053412,279.13,-0.36549,0.92955,0.048564,131.19,-0.012794,0.047152,-0.99881,241.44
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.93073,-0.36568,-0.0053412,274.24,-0.36549,0.92955,0.048564,66.152,-0.012794,0.047152,-0.99881,264.73
> view matrix models
> #3,-0.93073,-0.36568,-0.0053412,283.36,-0.36549,0.92955,0.048564,67.273,-0.012794,0.047152,-0.99881,265.19
> ui tool show "Fit in Map"
Fit map cryosparc_P1_J770_004_volume_map.mrc in map
cryosparc_P1_J1370_004_volume_map.mrc using 27425 points
correlation = 0.8901, correlation about mean = 0.5536, overlap = 440.2
steps = 104, shift = 9.32, angle = 11.6 degrees
Position of cryosparc_P1_J770_004_volume_map.mrc (#3) relative to
cryosparc_P1_J1370_004_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.96995001 -0.21363702 0.11643121 262.74724804
-0.21422188 0.97675535 0.00761470 45.95040252
-0.11535159 -0.01755623 -0.99316957 287.86924295
Axis -0.10796198 0.99415186 -0.00250855
Axis point 142.33756004 0.00000000 136.21119244
Rotation angle (degrees) 173.30563071
Shift along axis 16.59282924
> hide #!1 models
> show #!1 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!1 models
> show #!3 models
> ui mousemode right "map eraser"
> ~select #3
Nothing selected
> select #5
1 model selected
> volume erase #3 center 145.52,157.51,177.23 radius 21.026
Opened cryosparc_P1_J770_004_volume_map.mrc copy as #6, grid size 280,280,280,
pixel 0.849, shown at step 1, values float32
> hide #5 models
> show #5 models
> volume erase #6 center 145.6,157.08,154.08 radius 20.919
> volume erase #6 center 142.41,159.69,126.73 radius 20.919
> volume erase #6 center 142.03,152.51,99.669 radius 20.919
> volume erase #6 center 117.11,157.78,107.45 radius 20.919
> volume erase #6 center 178.89,147.12,111.38 radius 20.919
> volume erase #6 center 131.08,98.246,124.95 radius 20.919
> volume erase #6 center 101.12,112.16,123.03 radius 20.919
> volume erase #6 center 105.37,123.05,123.6 radius 20.919
> volume erase #6 center 106.39,135.8,129.56 radius 20.919
> volume erase #6 center 112.31,147.94,127.99 radius 20.919
> volume erase #6 center 120.8,142.82,131.84 radius 20.919
> volume erase #6 center 112.11,145.38,152.61 radius 20.919
> volume erase #6 center 109.5,163.65,159.3 radius 20.919
> volume erase #6 center 117.7,163.92,157.85 radius 20.919
> volume erase #6 center 113.43,164.15,180.47 radius 20.919
> volume erase #6 center 120.21,176.62,183.58 radius 20.919
> volume erase #6 center 172.3,156.09,176.99 radius 20.919
> volume erase #6 center 170.16,146.37,162.77 radius 20.919
> volume erase #6 center 173.27,150.15,142.56 radius 20.919
> volume erase #6 center 176.07,144.38,122.64 radius 20.919
> volume erase #6 center 172.12,146.5,114.11 radius 20.919
> volume erase #6 center 114,120.8,114.25 radius 20.919
> volume erase #6 center 121.42,127.6,106.92 radius 20.919
> volume erase #6 center 141.1,125.61,85.772 radius 20.919
> volume erase #6 center 155.57,121.88,90.605 radius 20.919
> volume erase #6 center 166.94,118.73,97.03 radius 20.919
> volume erase #6 center 143.53,99.892,100.42 radius 20.919
> volume erase #6 center 142.63,143.64,86.275 radius 20.919
> volume erase #6 center 162.86,138.95,88.396 radius 20.919
> volume erase #6 center 186.31,126.97,119.1 radius 20.919
> volume erase #6 center 111.4,118.62,130.59 radius 20.919
> volume erase #6 center 101.5,124.98,163.15 radius 20.919
> volume erase #6 center 95.838,130.52,173.49 radius 20.919
> volume erase #6 center 130.22,171.57,208.36 radius 20.919
> volume erase #6 center 125.35,159.14,206.53 radius 20.919
> volume erase #6 center 134.99,156.43,208.73 radius 20.919
> volume erase #6 center 125.22,144.96,229.08 radius 20.919
> volume erase #6 center 125.06,144.02,225.56 radius 20.919
> volume erase #6 center 115.37,161.53,197.75 radius 20.919
> volume erase #6 center 148.97,157.74,213.04 radius 20.919
> volume erase #6 center 151.12,153.76,200.71 radius 20.919
> volume erase #6 center 156.84,153.14,186.74 radius 20.919
> volume erase #6 center 152.6,134.2,96.628 radius 20.919
> volume erase #6 center 113.89,154.67,174.83 radius 20.919
> volume erase #6 center 114.25,152.85,178.41 radius 20.919
> volume erase #6 center 115.48,152.14,173.26 radius 20.919
> volume erase #6 center 106.64,125.68,151.18 radius 20.919
> volume erase #6 center 105.53,124.52,164.37 radius 20.919
> volume erase #6 center 100.08,123.28,179.19 radius 20.919
> volume erase #6 center 101.92,119.2,203.46 radius 20.919
> volume erase #6 center 121,134.55,98.465 radius 20.919
> volume erase #6 center 130.46,134.31,97.281 radius 20.919
> volume erase #6 center 138.34,114.7,105.17 radius 10.697
> volume #6 step 2
> volume #6 step 4
> volume #6 level 0.01249
> volume erase #6 center 134.86,173.8,108.73 radius 10.697
> volume erase #6 center 165.76,168.76,132.96 radius 10.697
> show #!1 models
> hide #!1 models
> show #!1 models
> save D:/Lab_Roh/Dicer/maps/20220915_J1370_mask_RNA.mrc models #6
> hide #!6 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!1 models
> volume erase #4 center 127.78,135.51,158.43 radius 59.343
Opened cryosparc_P1_J805_007_volume_map.mrc copy as #7, grid size 300,300,300,
pixel 1.1, shown at step 1, values float32
> volume #4 step 4
> volume #6 step 2
> show #!6 models
> volume #6 step 4
> hide #!6 models
> volume #7 step 2
> volume #7 step 4
> volume erase #7 center 200.43,159.63,66.36 radius 25.787
> volume erase #7 center 198.95,159.12,67.956 radius 25.787
> show #!1 models
> volume #7 level 0.018
> volume #7 level 0.01145
> hide #!1 models
> volume erase #7 center 184.6,108.23,211.36 radius 25.79
> volume erase #7 center 163.44,143.41,196.29 radius 25.79
> volume erase #7 center 150.85,132.74,210.76 radius 25.79
> volume erase #7 center 182.19,151.37,153.79 radius 25.79
> volume erase #7 center 184.51,176.09,141.53 radius 25.79
> volume erase #7 center 203.33,159.87,137.02 radius 25.79
> volume erase #7 center 127.12,191.59,119.85 radius 25.79
> volume erase #7 center 120,182.01,119.48 radius 25.79
> volume erase #7 center 116.3,187.02,92.966 radius 25.79
> volume erase #7 center 111.39,194.08,133.36 radius 25.79
> volume erase #7 center 149.79,191.65,77.503 radius 25.79
> volume erase #7 center 105.37,81.926,137.99 radius 25.79
> volume erase #7 center 98.085,84.663,128.7 radius 25.79
> volume erase #7 center 102.71,83.594,132.38 radius 25.79
> volume erase #7 center 154.17,194.4,98.788 radius 25.79
> volume erase #7 center 145.82,175.17,130.4 radius 25.79
> volume erase #7 center 169.02,90.874,164.3 radius 25.79
> volume erase #7 center 116.99,78.944,143.05 radius 25.79
> volume erase #7 center 159.77,179.82,128.93 radius 25.79
> volume erase #7 center 183.57,167.93,137 radius 25.79
> volume erase #7 center 184.3,167.04,133.43 radius 25.79
> save D:/Lab_Roh/Dicer/maps/20220915_J1370_mask_Helicase.mrc models #7
> save D:/Lab_Roh/Dicer/maps/20220915_J1370_mask_making.cxs
> hide #!7 models
> show #!1 models
> show #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> show #!6 models
> hide #5 models
> hide #!4 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> show #!3 models
> hide #!3 models
> vop subtract #1 #6 minrms True
Opened volume difference as #8, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32
Minimum RMS scale factor for "20220915_J1370_mask_RNA.mrc #6" above level
0.01249 is 1.3834
> show #!1 models
> vop subtract #1 #8 minrms True
Opened volume difference as #9, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32
Minimum RMS scale factor for "volume difference #8" above level 0.05758 is
1.058
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> volume #9 level 0.01118
> volume #9 level 0.02305
> show #5 models
> volume erase #9 center 138.17,189.71,166.29 radius 25.574
> volume erase #9 center 108.83,179.57,132.31 radius 25.574
> save D:/Lab_Roh/Dicer/maps/20220919_J1370_mask_making.cxs
No map chosen to save
> save D:/Lab_Roh/Dicer/maps/20220919_J1370_mask_RNA.mrc models #9
> volume #1 level 0.02989
> hide #5 models
> vop subtract #1 #3 minrms True
Opened volume difference as #10, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32
Minimum RMS scale factor for "cryosparc_P1_J770_004_volume_map.mrc #3" above
level 0.047007 is 1.1816
> hide #!10 models
> show #!10 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!10 models
> show #!10 models
> hide #!3 models
> show #!8 models
> hide #!8 models
> show #5 models
> hide #5 models
> close #10
> show #!1 models
> show #!3 models
> volume #3 level 0.01181
> volume #3 level 0.01696
> vop subtract #1 #3 minrms True
Opened volume difference as #10, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32
Minimum RMS scale factor for "cryosparc_P1_J770_004_volume_map.mrc #3" above
level 0.016963 is 1.2054
> show #!8 models
> hide #!8 models
> show #5 models
> volume erase #10 center 135.58,134.65,165.73 radius 64.696
> volume erase #10 center 161.06,79.331,143.87 radius 64.696
> volume erase #10 center 194.11,163.13,178.72 radius 64.696
> volume erase #10 center 175.91,142.39,129.74 radius 20.183
> volume erase #10 center 120.02,162.27,122.25 radius 20.183
> volume erase #10 center 108.98,146.77,124.06 radius 20.183
> volume #4 level 0.03261
> volume #10 level 0.01924
> volume erase #10 center 121.79,121.38,228.6 radius 20.183
> volume erase #10 center 116.73,101.95,227.59 radius 20.183
> volume erase #10 center 76.613,102.03,147.65 radius 20.183
> volume erase #10 center 144.35,87.356,74.779 radius 20.183
> volume erase #10 center 167.45,97.281,77.585 radius 20.183
> volume erase #10 center 178.45,108.73,80.882 radius 20.183
> volume erase #10 center 194.99,116.47,103.26 radius 20.183
> volume erase #10 center 209.55,131.36,114.93 radius 20.183
> volume erase #10 center 197.05,148.1,120.88 radius 20.183
> volume erase #10 center 197.11,147.12,117.73 radius 20.183
> volume erase #10 center 210.34,122.97,71.524 radius 20.183
> volume erase #10 center 166.61,216.72,132.48 radius 20.183
> volume erase #10 center 164.12,227.67,98.326 radius 20.183
> volume erase #10 center 135.32,226.85,96.618 radius 20.183
> volume erase #10 center 197.97,170.34,116.62 radius 20.183
> volume erase #10 center 121.02,193.26,134.3 radius 20.183
> volume erase #10 center 122.05,197.88,119.55 radius 20.183
> volume erase #10 center 118.21,208.05,106.25 radius 20.183
> volume erase #10 center 146.05,211.32,68.465 radius 20.183
> volume erase #10 center 153.39,202.12,65.533 radius 20.183
> volume erase #10 center 126.99,90.413,94.915 radius 20.183
> volume erase #10 center 137.63,86.955,88.523 radius 20.183
> volume erase #10 center 137.52,90.248,85.314 radius 15.898
> volume erase #10 center 103.73,90.915,76.452 radius 15.898
> volume erase #10 center 101.91,97.923,80.915 radius 15.898
> volume erase #10 center 172.25,115.45,69.818 radius 15.898
> volume erase #10 center 167.46,121.84,72.277 radius 6.6355
> volume erase #10 center 165.38,128.63,65.349 radius 6.6355
> volume erase #10 center 168.09,129.72,64.606 radius 6.6355
> volume erase #10 center 167.17,132.22,63.208 radius 6.6355
> volume erase #10 center 156.34,177.84,122.85 radius 6.6355
> volume erase #10 center 154.87,188.96,121.59 radius 6.6355
> volume erase #10 center 153.64,207.17,123.24 radius 6.6355
> volume erase #10 center 156.66,207.56,118.21 radius 6.6355
> volume erase #10 center 161,207.74,104.08 radius 6.6355
> volume erase #10 center 155.41,208.67,105.27 radius 6.6355
> volume erase #10 center 183.98,176.21,87.798 radius 6.6355
> volume erase #10 center 149.59,174.98,125.12 radius 6.6355
> volume erase #10 center 152.2,183.7,120.66 radius 6.6355
> volume erase #10 center 140.91,190.26,122.23 radius 6.6355
> volume erase #10 center 123.28,170.14,101.82 radius 6.6355
> volume erase #10 center 130.62,161.18,105.45 radius 6.6355
> volume erase #10 center 127.02,179.19,99.696 radius 6.6355
> volume erase #10 center 165.44,178.86,118.95 radius 6.6355
> volume erase #10 center 166.02,184.54,116.96 radius 6.6355
> volume erase #10 center 140.63,185.19,119.43 radius 6.6355
> volume erase #10 center 111.55,150,106.41 radius 6.6355
> volume erase #10 center 129.69,188.05,112.27 radius 6.6355
> volume erase #10 center 150.1,180.91,121.04 radius 6.6355
> volume erase #10 center 167.48,170.2,121.96 radius 6.6355
> volume erase #10 center 185.22,177.71,92.633 radius 6.6355
> volume erase #10 center 170,179.34,70.511 radius 6.6355
> volume erase #10 center 176.8,160.19,120.04 radius 6.6355
> volume erase #10 center 134.99,193.49,76.338 radius 6.6355
> volume erase #10 center 161.58,119.52,70.314 radius 6.6355
> hide #5 models
> save D:/Lab_Roh/Dicer/maps/20220919_J1370_mask_Helicase.mrc models #10
> save D:/Lab_Roh/Dicer/maps/20220919_J1370_mask_making.cxs
> close session
> open D:\Lab_Roh\Dicer\maps\20220915_J1383_mask_making.cxs format session
Opened cryosparc_P1_J1383_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0759, step 1, values float32
Opened emd_6905(5zal).map as #2, grid size 180,180,180, pixel 1.37, shown at
level 0.0347, step 1, values float32
Opened emd_6905(5zal).map copy as #5, grid size 180,180,180, pixel 1.37, shown
at level 0.00275, step 2, values float32
opened ChimeraX session
> hide #!5 models
> show #!1 models
> show #!2 models
> hide #!2 models
> volume #1 level 0.04027
> show #!2 models
> vop subtract #1 #2 minrms True
Opened volume difference as #4, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32
Minimum RMS scale factor for "emd_6905(5zal).map #2" above level 0.03469 is
2.3221
> hide #!4 models
> show #!4 models
> show #!1 models
> vop subtract #1 #4 minrms True
Opened volume difference as #6, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32
Minimum RMS scale factor for "volume difference #4" above level 0.040272 is
1.5201
> show #!1 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> hide #!2 models
> show #!2 models
> show #!3 models
> hide #!2 models
> select ::name="A"::name="C"::name="G"::name="U"
1234 atoms, 1379 bonds, 61 pseudobonds, 58 residues, 3 models selected
> color (#!3 & sel) red
> show #!6 models
> ui tool show "Color Zone"
> color zone #6 near sel distance 6.48
> color zone #6 near sel distance 7.63
> volume splitbyzone #6
Opened volume difference 0 as #7.1, grid size 256,256,256, pixel 1.08, shown
at level 0.0403, step 1, values float32
Opened volume difference 1 as #7.2, grid size 256,256,256, pixel 1.08, shown
at level 0.0403, step 1, values float32
> hide #!7 models
> hide #!7.1 models
> hide #!7.2 models
> hide #!3 models
> show #!7.2 models
> volume #7.2 level 0.005421
> save D:/Lab_Roh/Dicer/maps/20220919_J1383_mask_making.cxs
> save D:/Lab_Roh/Dicer/maps/20220919_J1383_mask_RNA.mrc models #7.2
> close session
> open D:\Lab_Roh\Dicer\maps\20220915_J1370_mask_making.cxs format session
Opened cryosparc_P1_J1370_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0576, step 1, values float32
Opened cryosparc_P1_J770_004_volume_map.mrc as #3, grid size 280,280,280,
pixel 0.849, shown at level 0.047, step 2, values float32
Opened cryosparc_P1_J805_007_volume_map.mrc as #4, grid size 300,300,300,
pixel 1.1, shown at level 0.0362, step 4, values float32
Opened 20220915_J1370_mask_RNA.mrc as #6, grid size 280,280,280, pixel 0.849,
shown at level 0.0125, step 4, values float32
Opened 20220915_J1370_mask_Helicase.mrc as #7, grid size 300,300,300, pixel
1.1, shown at level 0.0114, step 4, values float32
opened ChimeraX session
> hide #!7 models
> show #!6 models
> show #!1 models
> hide #!1 models
> close session
> open D:\Lab_Roh\Dicer\maps\20220919_J1370_mask_making.cxs format session
Opened cryosparc_P1_J1370_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0299, step 1, values float32
Opened cryosparc_P1_J770_004_volume_map.mrc as #3, grid size 280,280,280,
pixel 0.849, shown at level 0.017, step 2, values float32
Opened cryosparc_P1_J805_007_volume_map.mrc as #4, grid size 300,300,300,
pixel 1.1, shown at level 0.0326, step 4, values float32
Opened 20220915_J1370_mask_RNA.mrc as #6, grid size 280,280,280, pixel 0.849,
shown at level 0.0125, step 4, values float32
Opened 20220915_J1370_mask_Helicase.mrc as #7, grid size 300,300,300, pixel
1.1, shown at level 0.0114, step 4, values float32
Opened volume difference as #8, grid size 256,256,256, pixel 1.08, shown at
level 0.0576, step 1, values float32
Opened 20220919_J1370_mask_RNA.mrc as #9, grid size 256,256,256, pixel 1.08,
shown at level 0.023, step 1, values float32
Opened 20220919_J1370_mask_Helicase.mrc as #10, grid size 256,256,256, pixel
1.08, shown at level 0.0192, step 1, values float32
opened ChimeraX session
> hide #!10 models
> show #!9 models
> close session
> open D:/Lab_Roh/Dicer/maps/cryosparc_P1_J1447_class_00_00102_volume.mrc
Opened cryosparc_P1_J1447_class_00_00102_volume.mrc as #1, grid size
128,128,128, pixel 2.16, shown at level 0.193, step 1, values float32
> open D:/Lab_Roh/Dicer/maps/cryosparc_P1_J1447_class_01_00102_volume.mrc
Opened cryosparc_P1_J1447_class_01_00102_volume.mrc as #2, grid size
128,128,128, pixel 2.16, shown at level 0.183, step 1, values float32
> open D:/Lab_Roh/Dicer/maps/cryosparc_P1_J1447_class_02_00102_volume.mrc
Opened cryosparc_P1_J1447_class_02_00102_volume.mrc as #3, grid size
128,128,128, pixel 2.16, shown at level 0.165, step 1, values float32
> open D:/Lab_Roh/Dicer/maps/cryosparc_P1_J1447_class_03_00102_volume.mrc
Opened cryosparc_P1_J1447_class_03_00102_volume.mrc as #4, grid size
128,128,128, pixel 2.16, shown at level 0.162, step 1, values float32
> hide #!2 models
> hide #!3 models
> hide #!4 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> show #!3 models
> show #!1 models
> hide #!1 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!3 models
> show #!1 models
> hide #!3 models
> show #!3 models
> hide #!1 models
> hide #!3 models
> show #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> save D:/Lab_Roh/Dicer/maps/20220919_J1447.cxs
> close session
> ui tool show "Volume Viewer"
> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_000.mrc
Opened frame_000.mrc as #1, grid size 256,256,256, pixel 1.08, shown at level
0.0809, step 1, values float32
> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_001.mrc
Opened frame_001.mrc as #2, grid size 256,256,256, pixel 1.08, shown at level
0.0802, step 1, values float32
> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_002.mrc
Opened frame_002.mrc as #3, grid size 256,256,256, pixel 1.08, shown at level
0.0794, step 1, values float32
> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_003.mrc
Opened frame_003.mrc as #4, grid size 256,256,256, pixel 1.08, shown at level
0.0784, step 1, values float32
> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_004.mrc
Opened frame_004.mrc as #5, grid size 256,256,256, pixel 1.08, shown at level
0.0775, step 1, values float32
> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_005.mrc
Opened frame_005.mrc as #6, grid size 256,256,256, pixel 1.08, shown at level
0.0777, step 1, values float32
> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_006.mrc
Opened frame_006.mrc as #7, grid size 256,256,256, pixel 1.08, shown at level
0.0782, step 1, values float32
> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_007.mrc
Opened frame_007.mrc as #8, grid size 256,256,256, pixel 1.08, shown at level
0.0789, step 1, values float32
> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_008.mrc
Opened frame_008.mrc as #9, grid size 256,256,256, pixel 1.08, shown at level
0.0796, step 1, values float32
> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_009.mrc
Opened frame_009.mrc as #10, grid size 256,256,256, pixel 1.08, shown at level
0.08, step 1, values float32
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!3 models
> show #!3 models
> show #!2 models
> hide #!1-10 target m
> show #!1 models
> show #!2 models
> hide #!1 models
> show #!3 models
> hide #!2 models
> show #!4 models
> hide #!3 models
> show #!5 models
> hide #!4 models
> show #!6 models
> hide #!5 models
> show #!7 models
> hide #!6 models
> show #!8 models
> hide #!7 models
> show #!9 models
> hide #!8 models
> show #!10 models
> hide #!9 models
> hide #!10 models
> show #!2 models
> show #!3 models
> hide #!2 models
> show #!5 models
> hide #!3 models
> show #!6 models
> hide #!5 models
> show #!10 models
> hide #!6 models
> close session
> open
> D:\Lab_Roh\Dicer\maps\20220920\cryosparc_P1_J1461_component_000\cryosparc_P1_J1461_component_000\frame_009.mrc
> format mrc
Opened frame_009.mrc as #1, grid size 256,256,256, pixel 1.08, shown at level
0.08, step 1, values float32
> close session
> open
> D:\Lab_Roh\Dicer\maps\20220920\cryosparc_P1_J1461_component_000\cryosparc_P1_J1461_component_000\frame_009.mrc
> format mrc
Opened frame_009.mrc as #1, grid size 256,256,256, pixel 1.08, shown at level
0.08, step 1, values float32
> close session
> open
> D:\Lab_Roh\Dicer\maps\20220920\cryosparc_P1_J1461_component_000\cryosparc_P1_J1461_component_000\frame_000.mrc
> format mrc
Opened frame_000.mrc as #1, grid size 256,256,256, pixel 1.08, shown at level
0.0809, step 1, values float32
> close session
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3rc202111060828 (2021-11-06)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 NVIDIA 451.67
OpenGL renderer: GeForce GTX 1650 with Max-Q Design/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: SAMSUNG ELECTRONICS CO., LTD.
Model: 760XBE
OS: Microsoft Windows 10 Pro (Build 19043)
Memory: 17,065,771,008
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-8565U CPU @ 1.80GHz
OSLanguage: ko-KR
Locale: ('ko_KR', 'cp949')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.7
ChimeraX-AddCharge: 1.1.5
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.30.2
ChimeraX-AtomicLibrary: 4.1.5
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3rc202111060828
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.2
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.5.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.2.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.2
ParmEd: 3.2.0
parso: 0.8.2
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.22
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.1.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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