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#7635 closed defect (can't reproduce)

Crash using File→Open on Windows and/or in return statement

Reported by:	chimerax-bug-report@…	Owned by:	Eric Pettersen
Priority:	normal	Milestone:
Component:	Platform	Version:
Keywords:		Cc:	Tom Goddard
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description (last modified by Eric Pettersen)

The following bug report has been submitted:
Platform:        Windows-10-10.0.19043
ChimeraX Version: 1.3rc202111060828 (2021-11-06 08:28:15 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x000052f8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line Windows fatal exception: code 0x8001010e

973 in _bootstrap_innerWindows fatal exception: code 0x8001010e


  File "C:\Windows fatal exception: code 0x8001010e

ProWindows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e

Windows fatal exception: gr

Windows fatal exception: code 0x8001010e

code 0xWindows fatal exception: 8001010ecode 0xam

 8001010eWindows fatal exception: 

code 0xWindows fatal exception: Fcode 0x8001010e

iWindows fatal exception: 8001010ecode 0xle

8001010eWindows fatal exception: 

sWindows fatal exception: code 0x8001010e\Ccode 0x8001010e

hWindows fatal exception: im

code 0xWindows fatal exception: eraX 1code 0x8001010e8001010e



Windows fatal exception: Windows fatal exception: .3code 0x8001010ecode 0x

rc8001010e2

0Windows fatal exception: code 0x28001010e

11Windows fatal exception: code 0x18001010e

06Windows fatal exception: code 0x08001010e

82Windows fatal exception: code 0x8001010e8\

bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f0Windows fatal exception: code 0x (most recent call first):
8001010e

  File "Windows fatal exception: code 0xC:8001010e

\Windows fatal exception: code 0xPr8001010e

oWindows fatal exception: code 0xgr8001010e

aWindows fatal exception: code 0xm 8001010e

FWindows fatal exception: code 0xil8001010e

eWindows fatal exception: code 0xs8001010e

\CWindows fatal exception: code 0xh8001010e

imWindows fatal exception: code 0xe8001010e

rWindows fatal exception: code 0xa8001010e

XWindows fatal exception: code 0x 8001010e

1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py"Windows fatal exception: code 0x, line 9108001010e

 in rWindows fatal exception: code 0xun8001010e


Windows fatal exception: code 0x  File "8001010e

CWindows fatal exception: code 0x:\8001010e

PWindows fatal exception: code 0xro8001010e

gWindows fatal exception: code 0xra8001010e

mWindows fatal exception: code 0x F8001010e

iWindows fatal exception: code 0xle8001010e

sWindows fatal exception: code 0x\C8001010e

hWindows fatal exception: code 0xim8001010e

eWindows fatal exception: code 0xra8001010e

X 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052d8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimWindows fatal exception: code 0xe8001010er

aXWindows fatal exception:  code 0x18001010e.

3rWindows fatal exception: ccode 0x28001010e

0Windows fatal exception: 2code 0x18001010e1

1Windows fatal exception: 0code 0x68001010e0

8Windows fatal exception: 2code 0x88001010e\

bWindows fatal exception: icode 0xn8001010e\

lWindows fatal exception: icode 0xb8001010e\

tWindows fatal exception: hcode 0xr8001010ee

aWindows fatal exception: dcode 0xi8001010en

gWindows fatal exception: .pcode 0x8001010ey"

, line 930 in _bootstrap

Thread 0x000052dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052a4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.pyWindows fatal exception: code 0x", line 114 in worker8001010e


Windows fatal exception: code 0x  File "8001010e

CWindows fatal exception: :\code 0x8001010ePr

oWindows fatal exception: grcode 0x8001010eam

 Windows fatal exception: Ficode 0xle8001010es\

CWindows fatal exception: hcode 0xim8001010eer

aWindows fatal exception: X code 0x1.8001010e3r

cWindows fatal exception: 20code 0x218001010e11

0Windows fatal exception: 6code 0x08001010e8

2Windows fatal exception: 8\code 0x8001010ebi

nWindows fatal exception: \lcode 0x8001010eib

\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000016a8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910Windows fatal exception: code 0x in 8001010e

runWindows fatal exception: 
code 0x  File 8001010e"

C:Windows fatal exception: \code 0xP8001010er

ogWindows fatal exception: rcode 0xa8001010em

 FWindows fatal exception: icode 0xl8001010ee

s\Windows fatal exception: code 0xC8001010eh

imWindows fatal exception: code 0x8001010e

eraXWindows fatal exception: code 0x8001010e 

1.3rWindows fatal exception: code 0xc8001010e2

02Windows fatal exception: 1code 0x18001010e1

06Windows fatal exception: 0code 0x88001010e2

8\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003420 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChiWindows fatal exception: code 0xme8001010e

raWindows fatal exception: code 0xX 8001010e

1.Windows fatal exception: code 0x3r8001010e

c2Windows fatal exception: 0code 0x28001010e1

11Windows fatal exception: 0code 0x68001010e0

8Windows fatal exception: 2code 0x88001010e\

bWindows fatal exception: icode 0xn8001010e\

lWindows fatal exception: icode 0xb8001010e\

tWindows fatal exception: hrecode 0x8001010e

adWindows fatal exception: incode 0xg.8001010epy

", line Windows fatal exception: 930 in code 0x_b8001010eoo

tstrap

Thread 0x0000096c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000048c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\binWindows fatal exception: code 0x\l8001010e

ib\Windows fatal exception: code 0xmu8001010e

ltWindows fatal exception: code 0xip8001010e

roWindows fatal exception: code 0xce8001010e

ssWindows fatal exception: code 0xin8001010e

g\pWindows fatal exception: code 0xoo8001010e

l.Windows fatal exception: code 0xp8001010e

y"Windows fatal exception: code 0x, line 1148001010e

 in wWindows fatal exception: code 0xo8001010e

rkWindows fatal exception: code 0xe8001010e

r
Windows fatal exception: code 0x  File 8001010e

"C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001c70 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program FileWindows fatal exception: code 0xs8001010e\

ChiWindows fatal exception: mcode 0xe8001010er

aXWindows fatal exception:  code 0x18001010e.

3rWindows fatal exception: ccode 0x28001010e0

2Windows fatal exception: 1code 0x18001010e1

0Windows fatal exception: 6code 0x08001010e8

2Windows fatal exception: 8code 0x\8001010eb

iWindows fatal exception: ncode 0x\8001010el

iWindows fatal exception: bcode 0x\8001010et

hWindows fatal exception: rcode 0xe8001010ea

dWindows fatal exception: icode 0xn8001010eg

.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000038e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in initWindows fatal exception: code 0x
  File 8001010e

"C:Windows fatal exception: code 0x\P8001010e

roWindows fatal exception: code 0xgr8001010e

amWindows fatal exception: code 0x F8001010e

ileWindows fatal exception: code 0xs\8001010e

CWindows fatal exception: hicode 0xme8001010era

XWindows fatal exception:  1code 0x.38001010erc

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e20

2Windows fatal exception: code 0x1118001010e

06Windows fatal exception: 08code 0x8001010e28

\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000052f8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Windows fatal exception: code 0xPr8001010e

ogWindows fatal exception: code 0xra8001010e

m Windows fatal exception: code 0xFi8001010e

lWindows fatal exception: code 0xes8001010e

\Windows fatal exception: code 0xCh8001010e

Windows fatal exception: code 0x8001010e

iWindows fatal exception: code 0xm8001010e

erWindows fatal exception: code 0xaX 1.38001010e

rcWindows fatal exception: 20code 0x8001010e

Windows fatal exception: 21code 0x8001010e11

0Windows fatal exception: 60code 0x8001010e82

8\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_taskWindows fatal exception: code 0xs
8001010e

  File "Windows fatal exception: code 0xC:8001010e

\Windows fatal exception: code 0xPr8001010e

ogWindows fatal exception: code 0xra8001010e

mWindows fatal exception: code 0x F8001010e

iWindows fatal exception: code 0xle8001010e

sWindows fatal exception: code 0x\C8001010e

hiWindows fatal exception: code 0xme8001010e

raWindows fatal exception: code 0x8001010e

X Windows fatal exception: code 0x1.8001010e

3Windows fatal exception: code 0xrc8001010e

202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\biWindows fatal exception: code 0xn\8001010e

liWindows fatal exception: code 0xb\8001010e

muWindows fatal exception: code 0xlt8001010e

ipWindows fatal exception: rcode 0xo8001010ec

esWindows fatal exception: scode 0xi8001010en

g\Windows fatal exception: pcode 0xo8001010eo

lWindows fatal exception: .code 0xp8001010ey

"Windows fatal exception: , line code 0x4998001010e in 

_Windows fatal exception: wcode 0xa8001010ei

tWindows fatal exception: _code 0xf8001010eo

r_Windows fatal exception: ucode 0xp8001010edate

s
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052d8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rcWindows fatal exception: code 0x208001010e

211Windows fatal exception: code 0x108001010e

6Windows fatal exception: code 0x088001010e

2Windows fatal exception: code 0x8\8001010e

bWindows fatal exception: code 0xin8001010e

\Windows fatal exception: code 0xli8001010e

bWindows fatal exception: code 0x\th8001010e

rWindows fatal exception: code 0xea8001010e

dWindows fatal exception: code 0xin8001010e

gWindows fatal exception: code 0x.p8001010e

y"Windows fatal exception: code 0x, line 910 in 8001010e

run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc2021110Windows fatal exception: code 0x608001010e

82Windows fatal exception: code 0x8\8001010e

biWindows fatal exception: code 0xn\8001010e

lWindows fatal exception: code 0xib8001010e

\Windows fatal exception: code 0xthr8001010e

eWindows fatal exception: code 0xad8001010e

iWindows fatal exception: code 0xng8001010e

.Windows fatal exception: code 0xpy8001010e

"Windows fatal exception: code 0x, line 9738001010e

 in Windows fatal exception: code 0x_b8001010e

oWindows fatal exception: code 0xot8001010e

strap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052a4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000016a8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003420 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line Windows fatal exception: code 0x8001010e

114Windows fatal exception:  in code 0xw8001010eo

rWindows fatal exception: kcode 0xe8001010er


Windows fatal exception:   File code 0x"8001010eC

:Windows fatal exception: \code 0xP8001010er

oWindows fatal exception: gcode 0xr8001010ea

mWindows fatal exception:  code 0xF8001010ei

lWindows fatal exception: ecode 0xs8001010e\

CWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010eX

 Windows fatal exception: 1code 0x.8001010e3

rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000096c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threadiWindows fatal exception: code 0x8001010e

nWindows fatal exception: code 0xg.8001010e

pyWindows fatal exception: code 0x", line 8001010e

910Windows fatal exception:  in rcode 0xun8001010e
  File 

"Windows fatal exception: C:code 0x\P8001010ero

gWindows fatal exception: racode 0xm 8001010eFi

lWindows fatal exception: escode 0x\C8001010ehiWindows fatal exception: code 0x8001010e

mWindows fatal exception: er

code 0x8001010eaXWindows fatal exception: code 0x

8001010e Windows fatal exception: 1

.Windows fatal exception: 3code 0xrcode 0xc8001010e28001010e0

2

Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e



Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e



11Windows fatal exception: code 0x108001010e

6Windows fatal exception: code 0x088001010e

2Windows fatal exception: 8\code 0x8001010ebi

n\Windows fatal exception: code 0xli8001010e

bWindows fatal exception: \tcode 0x8001010ehr

eWindows fatal exception: adcode 0x8001010ein

g.py", line 973 in _bootWindows fatal exception: code 0xs8001010et

raWindows fatal exception: pcode 0x_8001010ei

nnWindows fatal exception: ecode 0xr8001010e


  File "Windows fatal exception: Ccode 0x:8001010e\

PWindows fatal exception: rcode 0xo8001010eg

rWindows fatal exception: acode 0xm8001010e 

FWindows fatal exception: icode 0xl8001010ee

sWindows fatal exception: \code 0xC8001010ehWindows fatal exception: code 0x

8001010eim

Windows fatal exception: code 0xe8001010er

aXWindows fatal exception: code 0xWindows fatal exception: code 0x 18001010e

8001010e

.Windows fatal exception: 3code 0xr8001010ec

20Windows fatal exception: code 0x218001010e

11Windows fatal exception: code 0x06Windows fatal exception: code 0x8001010e088001010e



Windows fatal exception: Windows fatal exception: code 0x8001010e

28\Windows fatal exception: code 0x8001010ebicode 0x8001010e

n\liWindows fatal exception: code 0x8001010e

bWindows fatal exception: code 0x8001010e

\Windows fatal exception: code 0x8001010e

tWindows fatal exception: code 0xhr

8001010eWindows fatal exception: code 0x

ea8001010e

dWindows fatal exception: iWindows fatal exception: code 0xngcode 0x8001010e8001010e

.pyWindows fatal exception: code 0x

", line Windows fatal exception: code 0x8001010e

930 in Windows fatal exception: code 0x8001010e_b8001010e



Windows fatal exception: oocode 0x8001010ets

tWindows fatal exception: code 0xra8001010e

pWindows fatal exception: code 0x

8001010e

Thread 0xWindows fatal exception: code 0x000048c8 (most recent call first):
8001010e

  File "C:\Program Files\ChimeraX 1.3rc20211106082Windows fatal exception: code 0x8\8001010ebi

n\Windows fatal exception: licode 0xb\8001010emul

tiWindows fatal exception: pcode 0xr8001010eWindows fatal exception: code 0x8001010e

oWindows fatal exception: ce

code 0xWindows fatal exception: 8001010e

ssWindows fatal exception: code 0xcode 0x8001010eing\pool8001010e



Windows fatal exception: .Windows fatal exception: code 0xcode 0x8001010e8001010e



pWindows fatal exception: ycode 0x"8001010e, line 

Windows fatal exception: Windows fatal exception: 114code 0x in 8001010ew

code 0xWindows fatal exception: code 0x8001010e8001010eo



Windows fatal exception: rkcode 0xWindows fatal exception: ecode 0xr8001010e


  File 8001010e

"CWindows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x:\

8001010eWindows fatal exception: Pr

ocode 0xWindows fatal exception: gr8001010ea

mWindows fatal exception:  code 0xFcode 0x8001010e8001010e



iWindows fatal exception: leWindows fatal exception: scode 0x\8001010eC

hcode 0x8001010eim

eraX 1.3rWindows fatal exception: code 0xc28001010e

02Windows fatal exception: code 0x18001010e

11Windows fatal exception: code 0x08001010e

60Windows fatal exception: code 0x88001010e

28Windows fatal exception: code 0x\8001010e

biWindows fatal exception: code 0xn8001010e

\lWindows fatal exception: code 0xib8001010e

\tWindows fatal exception: code 0xhWindows fatal exception: code 0x8001010e

reWindows fatal exception: acode 0xd8001010e

8001010e

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bWindows fatal exception: iWindows fatal exception: ncode 0x\8001010el

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tWindows fatal exception: scode 0xt8001010er

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code 0xe8001010eWindows fatal exception: 

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rWindows fatal exception: code 0x8001010eaX

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rcWindows fatal exception: code 0x28001010e

02Windows fatal exception: code 0x18001010e1

10Windows fatal exception: code 0x68001010e

0828\bin\lib\threadinWindows fatal exception: code 0xg8001010e

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:Windows fatal exception: \code 0xP8001010ercode 0x8001010e



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CWindows fatal exception: hcode 0xicode 0xm8001010ee8001010e



Windows fatal exception: Windows fatal exception: code 0xracode 0xX8001010e 8001010e



Windows fatal exception: 1.Windows fatal exception: 3code 0x8001010ecode 0x

rc8001010e2Windows fatal exception: 0

2code 0x18001010e1

1060828\bin\lib\mulWindows fatal exception: tcode 0xi8001010ep

roWindows fatal exception: ccode 0xe8001010es

sWindows fatal exception: icode 0xn8001010eg

\Windows fatal exception: pcode 0xo8001010eo

lWindows fatal exception: .code 0xp8001010ey

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Windows fatal exception: rkcode 0xecode 0x8001010e8001010e



rWindows fatal exception: 
code 0x  File 8001010e"

CWindows fatal exception: :code 0xWindows fatal exception: code 0x8001010e\P8001010er



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iWindows fatal exception: code 0xmeWindows fatal exception: code 0x8001010e8001010e



rWindows fatal exception: Windows fatal exception: code 0xcode 0xaX8001010e 

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.Windows fatal exception: code 0x3r8001010eWindows fatal exception: 

c2Windows fatal exception: code 0xcode 0x8001010e8001010e

0Windows fatal exception: 

2Windows fatal exception: 11code 0x18001010e0code 0x8001010e

60Windows fatal exception: code 0x

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\bWindows fatal exception: i

code 0x8001010eWindows fatal exception: code 0xn8001010e

\Windows fatal exception: lcode 0x

Windows fatal exception: code 0x8001010e

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tWindows fatal exception: hcode 0xr8001010ee

aWindows fatal exception: dWindows fatal exception: code 0xcode 0x8001010e8001010e



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py8001010e

", line Windows fatal exception: code 0x910 in 8001010e

Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e8001010eru

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8001010e




[lots of this deleted]

Thread 0x00001c70 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000038e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000052f8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052d8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052a4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000016a8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003420 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000096c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000048c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001c70 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000038e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000052f8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052d8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052a4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000016a8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003420 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000096c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000048c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001c70 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000038e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000052f8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052d8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052a4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000016a8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003420 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000096c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000048c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001c70 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000038e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000052f8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052d8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052a4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000016a8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003420 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000096c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000048c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001c70 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000038e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000052f8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052f0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052d8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052a4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000016a8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003420 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000096c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000048c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001c70 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000038e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202111060828\bin\lib\site-packages\chimerax\core\triggerset.py", line 187 in activate
Windows fatal exception: access violation

===== Log before crash start =====
> open D:\Lab_Roh\Dicer\cryosparc_P6_J39_005_volume_map.mrc format mrc

Opened cryosparc_P6_J39_005_volume_map.mrc as #1, grid size 256,256,256, pixel
0.87, shown at level 0.0467, step 1, values float32  

> close session

> open D:\Lab_Roh\Dicer\maps\cryosparc_P1_J1383_004_volume_map.mrc format mrc

Opened cryosparc_P1_J1383_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0759, step 1, values float32  

> close session

> open D:\Lab_Roh\Dicer\maps\20220908_Dicer_maps.cxs format session

Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #1, grid size
300,300,300, pixel 1.1, shown at level 0.12, step 1, values float32  
Opened cryosparc_P1_J805_007_volume_map.mrc as #3, grid size 300,300,300,
pixel 1.1, shown at step 1, values float32  
Opened cryosparc_P1_J770_004_volume_map_sharp.mrc as #4, grid size
280,280,280, pixel 0.849, shown at level 0.158, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 0 as #6.1, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 1 as #6.2, grid size
300,300,300, pixel 1.1, shown at level 0.0887, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 2 as #6.3, grid size
300,300,300, pixel 1.1, shown at level 0.0823, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 3 as #6.4, grid size
300,300,300, pixel 1.1, shown at level 0.0815, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 4 as #6.5, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 5 as #6.6, grid size
300,300,300, pixel 1.1, shown at level 0.0967, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 6 as #6.7, grid size
300,300,300, pixel 1.1, shown at level 0.127, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 7 as #6.8, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 8 as #6.9, grid size
300,300,300, pixel 1.1, shown at level 0.145, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 9 as #6.10, grid size
300,300,300, pixel 1.1, shown at level 0.0841, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 10 as #6.11, grid size
300,300,300, pixel 1.1, shown at level 0.144, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 11 as #6.12, grid size
300,300,300, pixel 1.1, shown at level 0.132, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 12 as #6.13, grid size
300,300,300, pixel 1.1, shown at level 0.109, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 13 as #6.14, grid size
300,300,300, pixel 1.1, shown at level 0.19, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 14 as #6.15, grid size
300,300,300, pixel 1.1, shown at level 0.0799, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #7, grid size
300,300,300, pixel 1.1, shown at level 0.0923, step 1, values float32  
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.101, step 1, values float32  
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc z flip as #9, grid size
256,256,256, pixel 1.08, shown at level 0.112, step 1, values float32  
Opened cryosparc_P1_J1261_002_volume_map.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0102, step 1, values float32  
Opened cryosparc_P1_J1261_002_volume_map_sharp.mrc as #11, grid size
256,256,256, pixel 1.08, shown at level 0.0546, step 1, values float32  
Opened cryosparc_P1_J1265_002_volume_map.mrc as #12, grid size 256,256,256,
pixel 1.08, shown at level 0.0884, step 1, values float32  
Opened cryosparc_P1_J1299_004_volume_map.mrc as #14, grid size 256,256,256,
pixel 1.08, shown at level 0.0659, step 1, values float32  
Opened cryosparc_P1_J805_007_volume_map_sharp.mrc as #15, grid size
300,300,300, pixel 1.1, shown at level 0.107, step 1, values float32  
Opened cryosparc_P1_J1321_005_volume_map.mrc as #16, grid size 256,256,256,
pixel 1.08, shown at level 0.0596, step 1, values float32  
Opened cryosparc_P1_J1325_006_volume_map.mrc as #17, grid size 256,256,256,
pixel 1.08, shown at level 0.0563, step 1, values float32  
Opened cryosparc_P1_J1325_006_volume_map.mrc z flip as #18, grid size
256,256,256, pixel 1.08, shown at level 0.051, step 1, values float32  
Opened cryosparc_P1_J1342_004_volume_map.mrc as #19, grid size 256,256,256,
pixel 1.08, shown at level 0.0675, step 1, values float32  
Opened cryosparc_P1_J1370_004_volume_map.mrc as #20, grid size 256,256,256,
pixel 1.08, shown at level 0.0426, step 1, values float32  
Opened cryosparc_P1_J1370_004_volume_map.mrc z flip as #21, grid size
256,256,256, pixel 1.08, shown at level 0.109, step 1, values float32  
Opened cryosparc_P1_J1355_003_volume_map.mrc as #22, grid size 256,256,256,
pixel 1.08, shown at level 0.0603, step 1, values float32  
Opened cryosparc_P1_J1383_004_volume_map.mrc as #23, grid size 256,256,256,
pixel 1.08, shown at level 0.0488, step 1, values float32  
Opened cryosparc_P1_J1390_004_volume_map.mrc as #24, grid size 256,256,256,
pixel 1.08, shown at level 0.0682, step 1, values float32  
opened ChimeraX session  

> close session

> open D:\Lab_Roh\Dicer\maps\20220914_Dicer_maps.cxs format session

Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #1, grid size
300,300,300, pixel 1.1, shown at level 0.12, step 1, values float32  
Opened cryosparc_P1_J805_007_volume_map.mrc as #3, grid size 300,300,300,
pixel 1.1, shown at step 1, values float32  
Opened cryosparc_P1_J770_004_volume_map_sharp.mrc as #4, grid size
280,280,280, pixel 0.849, shown at level 0.158, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 0 as #6.1, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 1 as #6.2, grid size
300,300,300, pixel 1.1, shown at level 0.0887, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 2 as #6.3, grid size
300,300,300, pixel 1.1, shown at level 0.0823, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 3 as #6.4, grid size
300,300,300, pixel 1.1, shown at level 0.0815, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 4 as #6.5, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 5 as #6.6, grid size
300,300,300, pixel 1.1, shown at level 0.0967, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 6 as #6.7, grid size
300,300,300, pixel 1.1, shown at level 0.127, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 7 as #6.8, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 8 as #6.9, grid size
300,300,300, pixel 1.1, shown at level 0.145, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 9 as #6.10, grid size
300,300,300, pixel 1.1, shown at level 0.0841, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 10 as #6.11, grid size
300,300,300, pixel 1.1, shown at level 0.144, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 11 as #6.12, grid size
300,300,300, pixel 1.1, shown at level 0.132, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 12 as #6.13, grid size
300,300,300, pixel 1.1, shown at level 0.109, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 13 as #6.14, grid size
300,300,300, pixel 1.1, shown at level 0.19, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 14 as #6.15, grid size
300,300,300, pixel 1.1, shown at level 0.0799, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #7, grid size
300,300,300, pixel 1.1, shown at level 0.0923, step 1, values float32  
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.101, step 1, values float32  
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc z flip as #9, grid size
256,256,256, pixel 1.08, shown at level 0.112, step 1, values float32  
Opened cryosparc_P1_J1261_002_volume_map.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0102, step 1, values float32  
Opened cryosparc_P1_J1261_002_volume_map_sharp.mrc as #11, grid size
256,256,256, pixel 1.08, shown at level 0.0546, step 1, values float32  
Opened cryosparc_P1_J1265_002_volume_map.mrc as #12, grid size 256,256,256,
pixel 1.08, shown at level 0.0884, step 1, values float32  
Opened cryosparc_P1_J805_007_volume_map_sharp.mrc as #15, grid size
300,300,300, pixel 1.1, shown at level 0.107, step 1, values float32  
Opened cryosparc_P1_J1370_004_volume_map.mrc as #20, grid size 256,256,256,
pixel 1.08, shown at level 0.0914, step 1, values float32  
Opened cryosparc_P1_J1383_004_volume_map.mrc as #23, grid size 256,256,256,
pixel 1.08, shown at level 0.0664, step 1, values float32  
Opened cryosparc_P1_J1390_004_volume_map.mrc as #24, grid size 256,256,256,
pixel 1.08, shown at level 0.0553, step 1, values float32  
Opened cryosparc_P1_J1370_004_volume_map.mrc z flip as #14, grid size
256,256,256, pixel 1.08, shown at level 0.0369, step 1, values float32  
Opened cryosparc_P1_J1388_006_volume_map.mrc as #16, grid size 256,256,256,
pixel 1.08, shown at level 0.0636, step 1, values float32  
Opened emd_6905(5zal).map as #17, grid size 180,180,180, pixel 1.37, shown at
level 0.0277, step 1, values float32  
opened ChimeraX session  

> close session

> open D:\Lab_Roh\Dicer\maps\cryosparc_P1_J1383_004_volume_map.mrc format mrc

Opened cryosparc_P1_J1383_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0759, step 1, values float32  

> open D:/Lab_Roh/Dicer/maps/emd_6905.map/emd_6905(5zal).map

Opened emd_6905(5zal).map as #2, grid size 180,180,180, pixel 1.37, shown at
level 0.0347, step 1, values float32  

> select #2

2 models selected  

> ui mousemode right "translate selected models"

> view matrix models #2,1,0,0,-20.279,0,1,0,-62.494,0,0,1,-3.8524

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.8195,-0.54338,-0.18209,289.82,0.52074,-0.83872,0.15929,71.996,-0.23928,0.035718,0.97029,24.93

> view matrix models
> #2,-0.83565,-0.41301,-0.36209,297.83,0.54443,-0.71013,-0.44645,126.04,-0.072743,-0.57021,0.81827,94.244

> view matrix models
> #2,0.34853,-0.92244,-0.16622,188.93,0.83492,0.38613,-0.39218,-45.941,0.42595,-0.0020975,0.90474,-44.714

> view matrix models
> #2,0.44782,-0.89407,0.0098593,152.36,0.88022,0.44276,0.17082,-125.31,-0.15709,-0.067818,0.98525,25.278

> view matrix models
> #2,-0.23658,-0.87614,-0.42001,285.76,0.8915,-0.36763,0.26472,-41.982,-0.38634,-0.31181,0.86805,96.355

> view matrix models
> #2,-0.26342,-0.79736,-0.54298,294.39,0.96412,-0.23673,-0.12011,-20.562,-0.032767,-0.55514,0.83111,86.008

> view matrix models
> #2,-0.77315,-0.62438,-0.11128,285.26,0.62816,-0.72967,-0.27017,97.036,0.08749,-0.27879,0.95636,23.566

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.77315,-0.62438,-0.11128,313.62,0.62816,-0.72967,-0.27017,189.91,0.08749,-0.27879,0.95636,41.636

> ui tool show "Fit in Map"

Fit map emd_6905(5zal).map in map cryosparc_P1_J1383_004_volume_map.mrc using
58265 points  
correlation = 0.9265, correlation about mean = 0.5204, overlap = 414.8  
steps = 132, shift = 11.3, angle = 9.04 degrees  
  
Position of emd_6905(5zal).map (#2) relative to
cryosparc_P1_J1383_004_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.67316591 -0.73528989 -0.07871770 321.20553127  
0.73111062 -0.64577447 -0.22011957 156.97429129  
0.11101781 -0.20572833 0.97229158 26.19016095  
Axis 0.00973239 -0.12831286 0.99168598  
Axis point 125.24846638 151.71825762 0.00000000  
Rotation angle (degrees) 132.32416423  
Shift along axis 8.95669368  
  

> open D:/Lab_Roh/Dicer/maps/5zal.cif

5zal.cif title:  
Cryo-EM structure of human Dicer and its complexes with a pre-miRNA substrate
[more info...]  
  
Chain information for 5zal.cif #3  
---  
Chain | Description | UniProt  
A | Endoribonuclease Dicer | DICER_HUMAN  
B | RISC-loading complex subunit TARBP2 | TRBP2_HUMAN  
C | RNA (73-mer) |  
  
Fit molecule 5zal.cif (#3) to map emd_6905(5zal).map (#2) using 12346 atoms  
average map value = 0.02464, steps = 252  
shifted from previous position = 23.5  
rotated from previous position = 48.9 degrees  
atoms outside contour = 8455, contour level = 0.03469  
  
Position of 5zal.cif (#3) relative to emd_6905(5zal).map (#2) coordinates:  
Matrix rotation and translation  
-0.93539423 -0.00961598 0.35347579 187.01661013  
-0.09726300 -0.95407477 -0.28333940 290.12675420  
0.33996693 -0.29941416 0.89150077 8.56684642  
Axis -0.17835666 0.14988686 -0.97248282  
Axis point 96.08231239 143.55222800 0.00000000  
Rotation angle (degrees) 177.41717524  
Shift along axis 1.79941883  
  

> ~select #2

Nothing selected  

> select #3

12346 atoms, 12712 bonds, 69 pseudobonds, 1447 residues, 3 models selected  

> view matrix models
> #3,0.67443,0.73156,-0.099788,-29.929,-0.6959,0.67499,0.24517,21.133,0.24671,-0.095905,0.96433,-3.1257

> ui mousemode right "rotate selected models"

> view matrix models
> #3,-0.72666,-0.66924,-0.15517,316.27,0.64742,-0.59155,-0.48053,87.037,0.2298,-0.44964,0.86314,52.402

> ui mousemode right "translate selected models"

> view matrix models
> #3,-0.72666,-0.66924,-0.15517,331.68,0.64742,-0.59155,-0.48053,199.27,0.2298,-0.44964,0.86314,62.094

> ui mousemode right "rotate selected models"

> view matrix models
> #3,-0.77079,-0.59846,-0.21847,336.51,0.61922,-0.62309,-0.47784,206.17,0.14985,-0.5036,0.85085,79.906

> view matrix models
> #3,-0.035566,-0.92959,-0.36687,300.59,0.95618,0.075096,-0.28297,59.032,0.2906,-0.36086,0.88619,41.337

> view matrix models
> #3,-0.3445,-0.93194,-0.11314,309.37,0.87398,-0.27438,-0.40109,124.28,0.34275,-0.23706,0.90902,17.599

> view matrix models
> #3,-0.34232,-0.93459,-0.096736,307.44,0.90856,-0.30301,-0.28759,109.73,0.23947,-0.18634,0.95286,19.411

> ui mousemode right "translate selected models"

> view matrix models
> #3,-0.34232,-0.93459,-0.096736,305.58,0.90856,-0.30301,-0.28759,97.384,0.23947,-0.18634,0.95286,11.588

> ui mousemode right "rotate selected models"

> view matrix models
> #3,-0.77609,-0.62053,-0.11236,325.23,0.61208,-0.69832,-0.37109,190.76,0.1518,-0.35677,0.92178,46.217

> view matrix models
> #3,-0.77621,-0.62431,-0.087937,322.77,0.62772,-0.75228,-0.20011,174.69,0.058779,-0.21053,0.97582,34.364

Fit molecule 5zal.cif (#3) to map emd_6905(5zal).map (#2) using 12346 atoms  
average map value = 0.04952, steps = 80  
shifted from previous position = 5.63  
rotated from previous position = 8.9 degrees  
atoms outside contour = 3117, contour level = 0.03469  
  
Position of 5zal.cif (#3) relative to emd_6905(5zal).map (#2) coordinates:  
Matrix rotation and translation  
0.99999960 -0.00026366 -0.00082285 0.17014790  
0.00026352 0.99999992 -0.00017103 -0.02026694  
0.00082289 0.00017081 0.99999962 -0.14760788  
Axis 0.19404752 -0.93423188 0.29925969  
Axis point 182.29409834 0.00000000 204.86343246  
Rotation angle (degrees) 0.05046582  
Shift along axis 0.00777771  
  

> ~select #3

Nothing selected  

> select /C

1234 atoms, 1379 bonds, 61 pseudobonds, 58 residues, 3 models selected  

> ui mousemode right "map eraser"

> select #3

12346 atoms, 12712 bonds, 69 pseudobonds, 1447 residues, 3 models selected  

> select #4

1 model selected  

> hide #!1 models

> hide #!3 models

> volume erase #2 center 142.21,102.18,123.94 radius 40.566 outside true

Opened emd_6905(5zal).map copy as #5, grid size 180,180,180, pixel 1.37, shown
at step 1, values float32  

> volume erase #5 center 140.76,161.3,134 radius 40.566

> volume erase #5 center 148.32,152.15,175.38 radius 40.566

> volume erase #5 center 147.14,168.7,111.92 radius 40.566

> volume erase #5 center 158.28,55.901,118.28 radius 40.566

> volume erase #5 center 187.98,154.17,107.44 radius 40.566

> volume #5 step 2

> volume #5 level 0.008213

> show #!1 models

> volume #5 level 0.002749

> hide #!5 models

> show #!5 models

> hide #!1 models

> show #4 models

> volume erase #5 center 98.998,163.79,109.34 radius 40.442

> volume erase #5 center 96.449,159.11,109.45 radius 40.442

> volume erase #5 center 156.45,137.17,142.8 radius 16.276

> volume erase #5 center 124.91,123.84,135.62 radius 3.9456

> volume erase #5 center 131.54,135,100.8 radius 3.9456

> volume erase #5 center 151.91,87.244,165.48 radius 3.9456

> volume erase #5 center 150.05,81.79,161.32 radius 3.9456

> volume erase #5 center 163.07,115.54,156.42 radius 3.9456

> volume erase #5 center 162.01,116.64,156.31 radius 3.9456

> save D:/Lab_Roh/Dicer/maps/20220915_J1383_mask_making.cxs

No map chosen to save  

> save D:/Lab_Roh/Dicer/maps/20220915_J1383_mask_RNA.mrc models #5

> close session

> open D:/Lab_Roh/Dicer/maps/20220915_J1383_mask_RNA.mrc

Opened 20220915_J1383_mask_RNA.mrc as #1, grid size 180,180,180, pixel 1.37,
shown at level 1.74e-06, step 1, values float32  

> close session

> open D:\Lab_Roh\Dicer\maps\20220915_J1383_mask_making.cxs format session

Opened cryosparc_P1_J1383_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0759, step 1, values float32  
Opened emd_6905(5zal).map as #2, grid size 180,180,180, pixel 1.37, shown at
level 0.0347, step 1, values float32  
Opened emd_6905(5zal).map copy as #5, grid size 180,180,180, pixel 1.37, shown
at level 0.00275, step 2, values float32  
opened ChimeraX session  

> show #!1 models

> close session

> open D:\Lab_Roh\Dicer\maps\20220914_Dicer_maps.cxs format session

Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #1, grid size
300,300,300, pixel 1.1, shown at level 0.12, step 1, values float32  
Opened cryosparc_P1_J805_007_volume_map.mrc as #3, grid size 300,300,300,
pixel 1.1, shown at step 1, values float32  
Opened cryosparc_P1_J770_004_volume_map_sharp.mrc as #4, grid size
280,280,280, pixel 0.849, shown at level 0.158, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 0 as #6.1, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 1 as #6.2, grid size
300,300,300, pixel 1.1, shown at level 0.0887, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 2 as #6.3, grid size
300,300,300, pixel 1.1, shown at level 0.0823, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 3 as #6.4, grid size
300,300,300, pixel 1.1, shown at level 0.0815, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 4 as #6.5, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 5 as #6.6, grid size
300,300,300, pixel 1.1, shown at level 0.0967, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 6 as #6.7, grid size
300,300,300, pixel 1.1, shown at level 0.127, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 7 as #6.8, grid size
300,300,300, pixel 1.1, shown at level 0.103, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 8 as #6.9, grid size
300,300,300, pixel 1.1, shown at level 0.145, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 9 as #6.10, grid size
300,300,300, pixel 1.1, shown at level 0.0841, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 10 as #6.11, grid size
300,300,300, pixel 1.1, shown at level 0.144, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 11 as #6.12, grid size
300,300,300, pixel 1.1, shown at level 0.132, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 12 as #6.13, grid size
300,300,300, pixel 1.1, shown at level 0.109, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 13 as #6.14, grid size
300,300,300, pixel 1.1, shown at level 0.19, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc 14 as #6.15, grid size
300,300,300, pixel 1.1, shown at level 0.0799, step 1, values float32  
Opened cryosparc_P63_J215_005_volume_map_sharp.mrc as #7, grid size
300,300,300, pixel 1.1, shown at level 0.0923, step 1, values float32  
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc as #8, grid size
256,256,256, pixel 1.08, shown at level 0.101, step 1, values float32  
Opened cryosparc_P1_J1251_003_volume_map_sharp.mrc z flip as #9, grid size
256,256,256, pixel 1.08, shown at level 0.112, step 1, values float32  
Opened cryosparc_P1_J1261_002_volume_map.mrc as #10, grid size 256,256,256,
pixel 1.08, shown at level 0.0102, step 1, values float32  
Opened cryosparc_P1_J1261_002_volume_map_sharp.mrc as #11, grid size
256,256,256, pixel 1.08, shown at level 0.0546, step 1, values float32  
Opened cryosparc_P1_J1265_002_volume_map.mrc as #12, grid size 256,256,256,
pixel 1.08, shown at level 0.0884, step 1, values float32  
Opened cryosparc_P1_J805_007_volume_map_sharp.mrc as #15, grid size
300,300,300, pixel 1.1, shown at level 0.107, step 1, values float32  
Opened cryosparc_P1_J1370_004_volume_map.mrc as #20, grid size 256,256,256,
pixel 1.08, shown at level 0.0914, step 1, values float32  
Opened cryosparc_P1_J1383_004_volume_map.mrc as #23, grid size 256,256,256,
pixel 1.08, shown at level 0.0664, step 1, values float32  
Opened cryosparc_P1_J1390_004_volume_map.mrc as #24, grid size 256,256,256,
pixel 1.08, shown at level 0.0553, step 1, values float32  
Opened cryosparc_P1_J1370_004_volume_map.mrc z flip as #14, grid size
256,256,256, pixel 1.08, shown at level 0.0369, step 1, values float32  
Opened cryosparc_P1_J1388_006_volume_map.mrc as #16, grid size 256,256,256,
pixel 1.08, shown at level 0.0636, step 1, values float32  
Opened emd_6905(5zal).map as #17, grid size 180,180,180, pixel 1.37, shown at
level 0.0277, step 1, values float32  
opened ChimeraX session  

> close session

> open D:/Lab_Roh/Dicer/maps/cryosparc_P1_J1370_004_volume_map.mrc

Opened cryosparc_P1_J1370_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0576, step 1, values float32  

> open
> D:/Lab_Roh/Dicer/maps/D_9100067514/20220502let7aGCm_IBS_J770_real_space_refined.cif

Summary of feedback from opening
D:/Lab_Roh/Dicer/maps/D_9100067514/20220502let7aGCm_IBS_J770_real_space_refined.cif  
---  
warnings | Skipping chem_comp category: Missing column 'type' near line 424  
Missing entity information. Treating each chain as a separate entity.  
Missing first residue in struct_conn "C00001"  
Missing first residue in struct_conn "C00002"  
Missing first residue in struct_conn "C00003"  
Missing first residue in struct_conn "C00004"  
Missing first residue in struct_conn "C00005"  
204 messages similar to the above omitted  
Bad residue range for struct_conf "1" near line 96  
Bad residue range for struct_conf "2" near line 97  
Bad residue range for struct_conf "3" near line 98  
Bad residue range for struct_conf "4" near line 99  
Bad residue range for struct_conf "5" near line 100  
22 messages similar to the above omitted  
Invalid sheet range for struct_sheet_range "A 1" near line 391  
Invalid sheet range for struct_sheet_range "A 2" near line 392  
Invalid sheet range for struct_sheet_range "B 1" near line 393  
Invalid sheet range for struct_sheet_range "B 2" near line 394  
Invalid sheet range for struct_sheet_range "C 1" near line 395  
6 messages similar to the above omitted  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
Skipping chem_comp category: Missing column 'type' near line 7574  
Skipping chem_comp category: Missing column 'type' near line 7826  
Skipping chem_comp category: Missing column 'type' near line 8111  
Skipping chem_comp category: Missing column 'type' near line 8390  
Skipping chem_comp category: Missing column 'type' near line 8651  
  
Chain information for 20220502let7aGCm_IBS_J770_real_space_refined.cif #2  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open D:/Lab_Roh/Dicer/maps/D_9100067514/cryosparc_P1_J770_004_volume_map.mrc

Opened cryosparc_P1_J770_004_volume_map.mrc as #3, grid size 280,280,280,
pixel 0.849, shown at level 0.047, step 2, values float32  

> open D:/Lab_Roh/Dicer/maps/D_9100068025/cryosparc_P1_J805_007_volume_map.mrc

Opened cryosparc_P1_J805_007_volume_map.mrc as #4, grid size 300,300,300,
pixel 1.1, shown at level 0.0362, step 2, values float32  

> hide #!2 models

> hide #!3 models

> ui mousemode right "translate selected models"

> select #4

2 models selected  

> view matrix models #4,1,0,0,41.877,0,1,0,48.126,0,0,1,-14.228

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.11087,-0.9935,-0.025606,342.11,-0.98318,-0.11341,0.14313,356.08,-0.14511,0.0093061,-0.98937,313.16

> view matrix models
> #4,-0.91746,0.38809,-0.087466,306.78,0.39468,0.91553,-0.07773,8.9952,0.049912,-0.10584,-0.99313,299.75

> view matrix models
> #4,-0.90802,0.2648,0.32463,260.89,0.38959,0.81863,0.42197,-52.027,-0.15402,0.50963,-0.8465,216.07

> view matrix models
> #4,-0.30854,0.76404,0.56661,50.101,0.92784,0.37296,0.0023402,-6.659,-0.20953,0.52645,-0.82398,219.04

> view matrix models
> #4,-0.78876,0.55049,-0.27353,289.59,0.33477,0.011488,-0.94223,289.81,-0.51555,-0.83476,-0.19335,380.33

> view matrix models
> #4,-0.37001,0.86621,0.33582,79.839,0.84014,0.46628,-0.27704,36.146,-0.39656,0.17963,-0.90026,314.18

> view matrix models
> #4,-0.73794,-0.30641,0.60129,278.32,-0.17579,0.9475,0.26709,43.68,-0.65156,0.0914,-0.75307,346.45

> view matrix models
> #4,-0.91932,-0.30684,0.24636,362.27,-0.35254,0.92036,-0.16926,143.46,-0.1748,-0.24246,-0.95428,351.15

> view matrix models
> #4,-0.73816,-0.62014,0.26559,377.92,-0.65695,0.7503,-0.073952,204.23,-0.15341,-0.22907,-0.96125,346.7

> view matrix models
> #4,-0.75204,-0.6466,0.12783,405.36,-0.65621,0.71632,-0.23722,234.37,0.061823,-0.26228,-0.96301,317.16

> ui mousemode right "translate selected models"

> view matrix models
> #4,-0.75204,-0.6466,0.12783,371.91,-0.65621,0.71632,-0.23722,163.31,0.061823,-0.26228,-0.96301,338.8

> view matrix models
> #4,-0.75204,-0.6466,0.12783,352.64,-0.65621,0.71632,-0.23722,157.84,0.061823,-0.26228,-0.96301,316.17

> view matrix models
> #4,-0.75204,-0.6466,0.12783,350.98,-0.65621,0.71632,-0.23722,165.23,0.061823,-0.26228,-0.96301,315.88

> view matrix models
> #4,-0.75204,-0.6466,0.12783,351.67,-0.65621,0.71632,-0.23722,160.44,0.061823,-0.26228,-0.96301,320.16

> hide #!4 models

> show #!3 models

> view matrix models
> #4,-0.75204,-0.6466,0.12783,365.79,-0.65621,0.71632,-0.23722,259.54,0.061823,-0.26228,-0.96301,325

> show #!4 models

> view matrix models
> #4,-0.75204,-0.6466,0.12783,352,-0.65621,0.71632,-0.23722,160.76,0.061823,-0.26228,-0.96301,318.37

> ~select #4

Nothing selected  

> hide #!4 models

> select #3

2 models selected  

> view matrix models #3,1,0,0,11.498,0,1,0,86.239,0,0,1,9.2543

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.21334,0.13549,0.96754,-27.742,-0.80009,-0.54411,0.25261,331.76,0.56067,-0.828,-0.0076709,161.35

> view matrix models
> #3,0.5009,-0.35794,-0.78802,204.83,0.46362,-0.65787,0.59351,158.47,-0.73086,-0.66264,-0.16358,309.88

> view matrix models
> #3,0.35682,-0.73248,-0.57979,241.22,-0.73881,-0.60109,0.30471,325.24,-0.5717,0.31963,-0.75564,245.23

> view matrix models
> #3,0.92269,-0.24639,0.29653,14.551,-0.14749,-0.93621,-0.319,370.09,0.35621,0.2506,-0.90017,162.95

> view matrix models
> #3,-0.93073,-0.36568,-0.0053412,279.13,-0.36549,0.92955,0.048564,131.19,-0.012794,0.047152,-0.99881,241.44

> ui mousemode right "translate selected models"

> view matrix models
> #3,-0.93073,-0.36568,-0.0053412,274.24,-0.36549,0.92955,0.048564,66.152,-0.012794,0.047152,-0.99881,264.73

> view matrix models
> #3,-0.93073,-0.36568,-0.0053412,283.36,-0.36549,0.92955,0.048564,67.273,-0.012794,0.047152,-0.99881,265.19

> ui tool show "Fit in Map"

Fit map cryosparc_P1_J770_004_volume_map.mrc in map
cryosparc_P1_J1370_004_volume_map.mrc using 27425 points  
correlation = 0.8901, correlation about mean = 0.5536, overlap = 440.2  
steps = 104, shift = 9.32, angle = 11.6 degrees  
  
Position of cryosparc_P1_J770_004_volume_map.mrc (#3) relative to
cryosparc_P1_J1370_004_volume_map.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.96995001 -0.21363702 0.11643121 262.74724804  
-0.21422188 0.97675535 0.00761470 45.95040252  
-0.11535159 -0.01755623 -0.99316957 287.86924295  
Axis -0.10796198 0.99415186 -0.00250855  
Axis point 142.33756004 0.00000000 136.21119244  
Rotation angle (degrees) 173.30563071  
Shift along axis 16.59282924  
  

> hide #!1 models

> show #!1 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> hide #!1 models

> show #!3 models

> ui mousemode right "map eraser"

> ~select #3

Nothing selected  

> select #5

1 model selected  

> volume erase #3 center 145.52,157.51,177.23 radius 21.026

Opened cryosparc_P1_J770_004_volume_map.mrc copy as #6, grid size 280,280,280,
pixel 0.849, shown at step 1, values float32  

> hide #5 models

> show #5 models

> volume erase #6 center 145.6,157.08,154.08 radius 20.919

> volume erase #6 center 142.41,159.69,126.73 radius 20.919

> volume erase #6 center 142.03,152.51,99.669 radius 20.919

> volume erase #6 center 117.11,157.78,107.45 radius 20.919

> volume erase #6 center 178.89,147.12,111.38 radius 20.919

> volume erase #6 center 131.08,98.246,124.95 radius 20.919

> volume erase #6 center 101.12,112.16,123.03 radius 20.919

> volume erase #6 center 105.37,123.05,123.6 radius 20.919

> volume erase #6 center 106.39,135.8,129.56 radius 20.919

> volume erase #6 center 112.31,147.94,127.99 radius 20.919

> volume erase #6 center 120.8,142.82,131.84 radius 20.919

> volume erase #6 center 112.11,145.38,152.61 radius 20.919

> volume erase #6 center 109.5,163.65,159.3 radius 20.919

> volume erase #6 center 117.7,163.92,157.85 radius 20.919

> volume erase #6 center 113.43,164.15,180.47 radius 20.919

> volume erase #6 center 120.21,176.62,183.58 radius 20.919

> volume erase #6 center 172.3,156.09,176.99 radius 20.919

> volume erase #6 center 170.16,146.37,162.77 radius 20.919

> volume erase #6 center 173.27,150.15,142.56 radius 20.919

> volume erase #6 center 176.07,144.38,122.64 radius 20.919

> volume erase #6 center 172.12,146.5,114.11 radius 20.919

> volume erase #6 center 114,120.8,114.25 radius 20.919

> volume erase #6 center 121.42,127.6,106.92 radius 20.919

> volume erase #6 center 141.1,125.61,85.772 radius 20.919

> volume erase #6 center 155.57,121.88,90.605 radius 20.919

> volume erase #6 center 166.94,118.73,97.03 radius 20.919

> volume erase #6 center 143.53,99.892,100.42 radius 20.919

> volume erase #6 center 142.63,143.64,86.275 radius 20.919

> volume erase #6 center 162.86,138.95,88.396 radius 20.919

> volume erase #6 center 186.31,126.97,119.1 radius 20.919

> volume erase #6 center 111.4,118.62,130.59 radius 20.919

> volume erase #6 center 101.5,124.98,163.15 radius 20.919

> volume erase #6 center 95.838,130.52,173.49 radius 20.919

> volume erase #6 center 130.22,171.57,208.36 radius 20.919

> volume erase #6 center 125.35,159.14,206.53 radius 20.919

> volume erase #6 center 134.99,156.43,208.73 radius 20.919

> volume erase #6 center 125.22,144.96,229.08 radius 20.919

> volume erase #6 center 125.06,144.02,225.56 radius 20.919

> volume erase #6 center 115.37,161.53,197.75 radius 20.919

> volume erase #6 center 148.97,157.74,213.04 radius 20.919

> volume erase #6 center 151.12,153.76,200.71 radius 20.919

> volume erase #6 center 156.84,153.14,186.74 radius 20.919

> volume erase #6 center 152.6,134.2,96.628 radius 20.919

> volume erase #6 center 113.89,154.67,174.83 radius 20.919

> volume erase #6 center 114.25,152.85,178.41 radius 20.919

> volume erase #6 center 115.48,152.14,173.26 radius 20.919

> volume erase #6 center 106.64,125.68,151.18 radius 20.919

> volume erase #6 center 105.53,124.52,164.37 radius 20.919

> volume erase #6 center 100.08,123.28,179.19 radius 20.919

> volume erase #6 center 101.92,119.2,203.46 radius 20.919

> volume erase #6 center 121,134.55,98.465 radius 20.919

> volume erase #6 center 130.46,134.31,97.281 radius 20.919

> volume erase #6 center 138.34,114.7,105.17 radius 10.697

> volume #6 step 2

> volume #6 step 4

> volume #6 level 0.01249

> volume erase #6 center 134.86,173.8,108.73 radius 10.697

> volume erase #6 center 165.76,168.76,132.96 radius 10.697

> show #!1 models

> hide #!1 models

> show #!1 models

> save D:/Lab_Roh/Dicer/maps/20220915_J1370_mask_RNA.mrc models #6

> hide #!6 models

> show #!2 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #!4 models

> hide #!1 models

> volume erase #4 center 127.78,135.51,158.43 radius 59.343

Opened cryosparc_P1_J805_007_volume_map.mrc copy as #7, grid size 300,300,300,
pixel 1.1, shown at step 1, values float32  

> volume #4 step 4

> volume #6 step 2

> show #!6 models

> volume #6 step 4

> hide #!6 models

> volume #7 step 2

> volume #7 step 4

> volume erase #7 center 200.43,159.63,66.36 radius 25.787

> volume erase #7 center 198.95,159.12,67.956 radius 25.787

> show #!1 models

> volume #7 level 0.018

> volume #7 level 0.01145

> hide #!1 models

> volume erase #7 center 184.6,108.23,211.36 radius 25.79

> volume erase #7 center 163.44,143.41,196.29 radius 25.79

> volume erase #7 center 150.85,132.74,210.76 radius 25.79

> volume erase #7 center 182.19,151.37,153.79 radius 25.79

> volume erase #7 center 184.51,176.09,141.53 radius 25.79

> volume erase #7 center 203.33,159.87,137.02 radius 25.79

> volume erase #7 center 127.12,191.59,119.85 radius 25.79

> volume erase #7 center 120,182.01,119.48 radius 25.79

> volume erase #7 center 116.3,187.02,92.966 radius 25.79

> volume erase #7 center 111.39,194.08,133.36 radius 25.79

> volume erase #7 center 149.79,191.65,77.503 radius 25.79

> volume erase #7 center 105.37,81.926,137.99 radius 25.79

> volume erase #7 center 98.085,84.663,128.7 radius 25.79

> volume erase #7 center 102.71,83.594,132.38 radius 25.79

> volume erase #7 center 154.17,194.4,98.788 radius 25.79

> volume erase #7 center 145.82,175.17,130.4 radius 25.79

> volume erase #7 center 169.02,90.874,164.3 radius 25.79

> volume erase #7 center 116.99,78.944,143.05 radius 25.79

> volume erase #7 center 159.77,179.82,128.93 radius 25.79

> volume erase #7 center 183.57,167.93,137 radius 25.79

> volume erase #7 center 184.3,167.04,133.43 radius 25.79

> save D:/Lab_Roh/Dicer/maps/20220915_J1370_mask_Helicase.mrc models #7

> save D:/Lab_Roh/Dicer/maps/20220915_J1370_mask_making.cxs

> hide #!7 models

> show #!1 models

> show #!2 models

> show #!3 models

> hide #!3 models

> show #!4 models

> show #!6 models

> hide #5 models

> hide #!4 models

> hide #!2 models

> hide #!1 models

> show #!1 models

> show #!3 models

> hide #!3 models

> vop subtract #1 #6 minrms True

Opened volume difference as #8, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32  
Minimum RMS scale factor for "20220915_J1370_mask_RNA.mrc #6" above level
0.01249 is 1.3834  
  

> show #!1 models

> vop subtract #1 #8 minrms True

Opened volume difference as #9, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32  
Minimum RMS scale factor for "volume difference #8" above level 0.05758 is
1.058  
  

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> volume #9 level 0.01118

> volume #9 level 0.02305

> show #5 models

> volume erase #9 center 138.17,189.71,166.29 radius 25.574

> volume erase #9 center 108.83,179.57,132.31 radius 25.574

> save D:/Lab_Roh/Dicer/maps/20220919_J1370_mask_making.cxs

No map chosen to save  

> save D:/Lab_Roh/Dicer/maps/20220919_J1370_mask_RNA.mrc models #9

> volume #1 level 0.02989

> hide #5 models

> vop subtract #1 #3 minrms True

Opened volume difference as #10, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32  
Minimum RMS scale factor for "cryosparc_P1_J770_004_volume_map.mrc #3" above
level 0.047007 is 1.1816  
  

> hide #!10 models

> show #!10 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!10 models

> show #!10 models

> hide #!3 models

> show #!8 models

> hide #!8 models

> show #5 models

> hide #5 models

> close #10

> show #!1 models

> show #!3 models

> volume #3 level 0.01181

> volume #3 level 0.01696

> vop subtract #1 #3 minrms True

Opened volume difference as #10, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32  
Minimum RMS scale factor for "cryosparc_P1_J770_004_volume_map.mrc #3" above
level 0.016963 is 1.2054  
  

> show #!8 models

> hide #!8 models

> show #5 models

> volume erase #10 center 135.58,134.65,165.73 radius 64.696

> volume erase #10 center 161.06,79.331,143.87 radius 64.696

> volume erase #10 center 194.11,163.13,178.72 radius 64.696

> volume erase #10 center 175.91,142.39,129.74 radius 20.183

> volume erase #10 center 120.02,162.27,122.25 radius 20.183

> volume erase #10 center 108.98,146.77,124.06 radius 20.183

> volume #4 level 0.03261

> volume #10 level 0.01924

> volume erase #10 center 121.79,121.38,228.6 radius 20.183

> volume erase #10 center 116.73,101.95,227.59 radius 20.183

> volume erase #10 center 76.613,102.03,147.65 radius 20.183

> volume erase #10 center 144.35,87.356,74.779 radius 20.183

> volume erase #10 center 167.45,97.281,77.585 radius 20.183

> volume erase #10 center 178.45,108.73,80.882 radius 20.183

> volume erase #10 center 194.99,116.47,103.26 radius 20.183

> volume erase #10 center 209.55,131.36,114.93 radius 20.183

> volume erase #10 center 197.05,148.1,120.88 radius 20.183

> volume erase #10 center 197.11,147.12,117.73 radius 20.183

> volume erase #10 center 210.34,122.97,71.524 radius 20.183

> volume erase #10 center 166.61,216.72,132.48 radius 20.183

> volume erase #10 center 164.12,227.67,98.326 radius 20.183

> volume erase #10 center 135.32,226.85,96.618 radius 20.183

> volume erase #10 center 197.97,170.34,116.62 radius 20.183

> volume erase #10 center 121.02,193.26,134.3 radius 20.183

> volume erase #10 center 122.05,197.88,119.55 radius 20.183

> volume erase #10 center 118.21,208.05,106.25 radius 20.183

> volume erase #10 center 146.05,211.32,68.465 radius 20.183

> volume erase #10 center 153.39,202.12,65.533 radius 20.183

> volume erase #10 center 126.99,90.413,94.915 radius 20.183

> volume erase #10 center 137.63,86.955,88.523 radius 20.183

> volume erase #10 center 137.52,90.248,85.314 radius 15.898

> volume erase #10 center 103.73,90.915,76.452 radius 15.898

> volume erase #10 center 101.91,97.923,80.915 radius 15.898

> volume erase #10 center 172.25,115.45,69.818 radius 15.898

> volume erase #10 center 167.46,121.84,72.277 radius 6.6355

> volume erase #10 center 165.38,128.63,65.349 radius 6.6355

> volume erase #10 center 168.09,129.72,64.606 radius 6.6355

> volume erase #10 center 167.17,132.22,63.208 radius 6.6355

> volume erase #10 center 156.34,177.84,122.85 radius 6.6355

> volume erase #10 center 154.87,188.96,121.59 radius 6.6355

> volume erase #10 center 153.64,207.17,123.24 radius 6.6355

> volume erase #10 center 156.66,207.56,118.21 radius 6.6355

> volume erase #10 center 161,207.74,104.08 radius 6.6355

> volume erase #10 center 155.41,208.67,105.27 radius 6.6355

> volume erase #10 center 183.98,176.21,87.798 radius 6.6355

> volume erase #10 center 149.59,174.98,125.12 radius 6.6355

> volume erase #10 center 152.2,183.7,120.66 radius 6.6355

> volume erase #10 center 140.91,190.26,122.23 radius 6.6355

> volume erase #10 center 123.28,170.14,101.82 radius 6.6355

> volume erase #10 center 130.62,161.18,105.45 radius 6.6355

> volume erase #10 center 127.02,179.19,99.696 radius 6.6355

> volume erase #10 center 165.44,178.86,118.95 radius 6.6355

> volume erase #10 center 166.02,184.54,116.96 radius 6.6355

> volume erase #10 center 140.63,185.19,119.43 radius 6.6355

> volume erase #10 center 111.55,150,106.41 radius 6.6355

> volume erase #10 center 129.69,188.05,112.27 radius 6.6355

> volume erase #10 center 150.1,180.91,121.04 radius 6.6355

> volume erase #10 center 167.48,170.2,121.96 radius 6.6355

> volume erase #10 center 185.22,177.71,92.633 radius 6.6355

> volume erase #10 center 170,179.34,70.511 radius 6.6355

> volume erase #10 center 176.8,160.19,120.04 radius 6.6355

> volume erase #10 center 134.99,193.49,76.338 radius 6.6355

> volume erase #10 center 161.58,119.52,70.314 radius 6.6355

> hide #5 models

> save D:/Lab_Roh/Dicer/maps/20220919_J1370_mask_Helicase.mrc models #10

> save D:/Lab_Roh/Dicer/maps/20220919_J1370_mask_making.cxs

> close session

> open D:\Lab_Roh\Dicer\maps\20220915_J1383_mask_making.cxs format session

Opened cryosparc_P1_J1383_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0759, step 1, values float32  
Opened emd_6905(5zal).map as #2, grid size 180,180,180, pixel 1.37, shown at
level 0.0347, step 1, values float32  
Opened emd_6905(5zal).map copy as #5, grid size 180,180,180, pixel 1.37, shown
at level 0.00275, step 2, values float32  
opened ChimeraX session  

> hide #!5 models

> show #!1 models

> show #!2 models

> hide #!2 models

> volume #1 level 0.04027

> show #!2 models

> vop subtract #1 #2 minrms True

Opened volume difference as #4, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32  
Minimum RMS scale factor for "emd_6905(5zal).map #2" above level 0.03469 is
2.3221  
  

> hide #!4 models

> show #!4 models

> show #!1 models

> vop subtract #1 #4 minrms True

Opened volume difference as #6, grid size 256,256,256, pixel 1.08, shown at
step 1, values float32  
Minimum RMS scale factor for "volume difference #4" above level 0.040272 is
1.5201  
  

> show #!1 models

> hide #!1 models

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> hide #!2 models

> show #!2 models

> show #!3 models

> hide #!2 models

> select ::name="A"::name="C"::name="G"::name="U"

1234 atoms, 1379 bonds, 61 pseudobonds, 58 residues, 3 models selected  

> color (#!3 & sel) red

> show #!6 models

> ui tool show "Color Zone"

> color zone #6 near sel distance 6.48

> color zone #6 near sel distance 7.63

> volume splitbyzone #6

Opened volume difference 0 as #7.1, grid size 256,256,256, pixel 1.08, shown
at level 0.0403, step 1, values float32  
Opened volume difference 1 as #7.2, grid size 256,256,256, pixel 1.08, shown
at level 0.0403, step 1, values float32  

> hide #!7 models

> hide #!7.1 models

> hide #!7.2 models

> hide #!3 models

> show #!7.2 models

> volume #7.2 level 0.005421

> save D:/Lab_Roh/Dicer/maps/20220919_J1383_mask_making.cxs

> save D:/Lab_Roh/Dicer/maps/20220919_J1383_mask_RNA.mrc models #7.2

> close session

> open D:\Lab_Roh\Dicer\maps\20220915_J1370_mask_making.cxs format session

Opened cryosparc_P1_J1370_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0576, step 1, values float32  
Opened cryosparc_P1_J770_004_volume_map.mrc as #3, grid size 280,280,280,
pixel 0.849, shown at level 0.047, step 2, values float32  
Opened cryosparc_P1_J805_007_volume_map.mrc as #4, grid size 300,300,300,
pixel 1.1, shown at level 0.0362, step 4, values float32  
Opened 20220915_J1370_mask_RNA.mrc as #6, grid size 280,280,280, pixel 0.849,
shown at level 0.0125, step 4, values float32  
Opened 20220915_J1370_mask_Helicase.mrc as #7, grid size 300,300,300, pixel
1.1, shown at level 0.0114, step 4, values float32  
opened ChimeraX session  

> hide #!7 models

> show #!6 models

> show #!1 models

> hide #!1 models

> close session

> open D:\Lab_Roh\Dicer\maps\20220919_J1370_mask_making.cxs format session

Opened cryosparc_P1_J1370_004_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.08, shown at level 0.0299, step 1, values float32  
Opened cryosparc_P1_J770_004_volume_map.mrc as #3, grid size 280,280,280,
pixel 0.849, shown at level 0.017, step 2, values float32  
Opened cryosparc_P1_J805_007_volume_map.mrc as #4, grid size 300,300,300,
pixel 1.1, shown at level 0.0326, step 4, values float32  
Opened 20220915_J1370_mask_RNA.mrc as #6, grid size 280,280,280, pixel 0.849,
shown at level 0.0125, step 4, values float32  
Opened 20220915_J1370_mask_Helicase.mrc as #7, grid size 300,300,300, pixel
1.1, shown at level 0.0114, step 4, values float32  
Opened volume difference as #8, grid size 256,256,256, pixel 1.08, shown at
level 0.0576, step 1, values float32  
Opened 20220919_J1370_mask_RNA.mrc as #9, grid size 256,256,256, pixel 1.08,
shown at level 0.023, step 1, values float32  
Opened 20220919_J1370_mask_Helicase.mrc as #10, grid size 256,256,256, pixel
1.08, shown at level 0.0192, step 1, values float32  
opened ChimeraX session  

> hide #!10 models

> show #!9 models

> close session

> open D:/Lab_Roh/Dicer/maps/cryosparc_P1_J1447_class_00_00102_volume.mrc

Opened cryosparc_P1_J1447_class_00_00102_volume.mrc as #1, grid size
128,128,128, pixel 2.16, shown at level 0.193, step 1, values float32  

> open D:/Lab_Roh/Dicer/maps/cryosparc_P1_J1447_class_01_00102_volume.mrc

Opened cryosparc_P1_J1447_class_01_00102_volume.mrc as #2, grid size
128,128,128, pixel 2.16, shown at level 0.183, step 1, values float32  

> open D:/Lab_Roh/Dicer/maps/cryosparc_P1_J1447_class_02_00102_volume.mrc

Opened cryosparc_P1_J1447_class_02_00102_volume.mrc as #3, grid size
128,128,128, pixel 2.16, shown at level 0.165, step 1, values float32  

> open D:/Lab_Roh/Dicer/maps/cryosparc_P1_J1447_class_03_00102_volume.mrc

Opened cryosparc_P1_J1447_class_03_00102_volume.mrc as #4, grid size
128,128,128, pixel 2.16, shown at level 0.162, step 1, values float32  

> hide #!2 models

> hide #!3 models

> hide #!4 models

> show #!2 models

> hide #!1 models

> hide #!2 models

> show #!3 models

> show #!1 models

> hide #!1 models

> hide #!3 models

> show #!4 models

> hide #!4 models

> show #!3 models

> show #!1 models

> hide #!3 models

> show #!3 models

> hide #!1 models

> hide #!3 models

> show #!1 models

> show #!2 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #!4 models

> hide #!4 models

> save D:/Lab_Roh/Dicer/maps/20220919_J1447.cxs

> close session

> ui tool show "Volume Viewer"

> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_000.mrc

Opened frame_000.mrc as #1, grid size 256,256,256, pixel 1.08, shown at level
0.0809, step 1, values float32  

> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_001.mrc

Opened frame_001.mrc as #2, grid size 256,256,256, pixel 1.08, shown at level
0.0802, step 1, values float32  

> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_002.mrc

Opened frame_002.mrc as #3, grid size 256,256,256, pixel 1.08, shown at level
0.0794, step 1, values float32  

> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_003.mrc

Opened frame_003.mrc as #4, grid size 256,256,256, pixel 1.08, shown at level
0.0784, step 1, values float32  

> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_004.mrc

Opened frame_004.mrc as #5, grid size 256,256,256, pixel 1.08, shown at level
0.0775, step 1, values float32  

> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_005.mrc

Opened frame_005.mrc as #6, grid size 256,256,256, pixel 1.08, shown at level
0.0777, step 1, values float32  

> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_006.mrc

Opened frame_006.mrc as #7, grid size 256,256,256, pixel 1.08, shown at level
0.0782, step 1, values float32  

> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_007.mrc

Opened frame_007.mrc as #8, grid size 256,256,256, pixel 1.08, shown at level
0.0789, step 1, values float32  

> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_008.mrc

Opened frame_008.mrc as #9, grid size 256,256,256, pixel 1.08, shown at level
0.0796, step 1, values float32  

> open
> D:/Lab_Roh/Dicer/maps/20220920/cryosparc_P1_J1461_component_000/cryosparc_P1_J1461_component_000/frame_009.mrc

Opened frame_009.mrc as #10, grid size 256,256,256, pixel 1.08, shown at level
0.08, step 1, values float32  

> hide #!2 models

> show #!2 models

> hide #!2 models

> hide #!3 models

> show #!3 models

> show #!2 models

> hide #!1-10 target m

> show #!1 models

> show #!2 models

> hide #!1 models

> show #!3 models

> hide #!2 models

> show #!4 models

> hide #!3 models

> show #!5 models

> hide #!4 models

> show #!6 models

> hide #!5 models

> show #!7 models

> hide #!6 models

> show #!8 models

> hide #!7 models

> show #!9 models

> hide #!8 models

> show #!10 models

> hide #!9 models

> hide #!10 models

> show #!2 models

> show #!3 models

> hide #!2 models

> show #!5 models

> hide #!3 models

> show #!6 models

> hide #!5 models

> show #!10 models

> hide #!6 models

> close session

> open
> D:\Lab_Roh\Dicer\maps\20220920\cryosparc_P1_J1461_component_000\cryosparc_P1_J1461_component_000\frame_009.mrc
> format mrc

Opened frame_009.mrc as #1, grid size 256,256,256, pixel 1.08, shown at level
0.08, step 1, values float32  

> close session

> open
> D:\Lab_Roh\Dicer\maps\20220920\cryosparc_P1_J1461_component_000\cryosparc_P1_J1461_component_000\frame_009.mrc
> format mrc

Opened frame_009.mrc as #1, grid size 256,256,256, pixel 1.08, shown at level
0.08, step 1, values float32  

> close session

> open
> D:\Lab_Roh\Dicer\maps\20220920\cryosparc_P1_J1461_component_000\cryosparc_P1_J1461_component_000\frame_000.mrc
> format mrc

Opened frame_000.mrc as #1, grid size 256,256,256, pixel 1.08, shown at level
0.0809, step 1, values float32  

> close session


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3rc202111060828 (2021-11-06)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 451.67
OpenGL renderer: GeForce GTX 1650 with Max-Q Design/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: SAMSUNG ELECTRONICS CO., LTD.
Model: 760XBE
OS: Microsoft Windows 10 Pro (Build 19043)
Memory: 17,065,771,008
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-8565U CPU @ 1.80GHz
OSLanguage: ko-KR
Locale: ('ko_KR', 'cp949')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.7
    ChimeraX-AddCharge: 1.1.5
    ChimeraX-AddH: 2.1.10
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.30.2
    ChimeraX-AtomicLibrary: 4.1.5
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3rc202111060828
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.2
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.5.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.2.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.7.3
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.2
    ParmEd: 3.2.0
    parso: 0.8.2
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.22
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.2
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Cc:	Tom Goddard added
Component:	Unassigned → Platform
Description:	modified (diff)
Owner:	set to Eric Pettersen
Platform:	→ all
Project:	→ ChimeraX
Status:	new → accepted
Summary:	ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement

comment:2 by Eric Pettersen, 3 years ago

Resolution:	→ can't reproduce
Status:	accepted → closed

1.3

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