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Opened 3 years ago
Closed 3 years ago
#7634 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement — at Version 1
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Windows-10-10.0.22000
ChimeraX Version: 1.4.dev202203170703 (2022-03-17 07:03:24 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x00004674 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ad4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000c8c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000063c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000264c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003190 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004cdc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052cc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000293c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003544 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000043dc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002510 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000501c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005efc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004354 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052bc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000f5c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000178c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000434 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000056ec (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1286 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004674 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ad4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000c8c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000063c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000264c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003190 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004cdc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052cc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000293c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003544 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000043dc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002510 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000501c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005efc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004354 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052bc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000f5c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000178c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program FilWindows fatal exception: code 0xes\Ch8001010e
imerWindows fatal exception: code 0xWindows fatal exception: code 0x8001010e
aWindows fatal exception: code 0xWindows fatal exception: code 0xWindows fatal exception: code 0x8001010e
8001010eWindows fatal exception: code 0x8001010e
8001010eWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
8001010e
XWindows fatal exception: 1.4.dev202203170703\bin\lcode 0x8001010eWindows fatal exception:
Windows fatal exception: Windows fatal exception: code 0x8001010e
iWindows fatal exception: code 0x8001010e
code 0xWindows fatal exception: code 0x8001010e
bWindows fatal exception: code 0x8001010e
8001010eWindows fatal exception: code 0x8001010e
\Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
tWindows fatal exception: hreWindows fatal exception: code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010e
aWindows fatal exception: code 0x8001010e
code 0x8001010e
code 0xWindows fatal exception: code 0x8001010e
code 0xWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e
8001010eWindows fatal exception: code 0x8001010e8001010e
dWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x
8001010eiWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
ng.py"code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e
code 0xWindows fatal exception: code 0x8001010e
, line Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010ecode 0x8001010ecode 0x8001010e
930Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x in _bootstrap
8001010e
Thread 0x00000434
(most recent call first):
Windows fatal exception: code 0x8001010e
File Windows fatal exception: code 0x8001010e
"Windows fatal exception: code 0x8001010e
C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000056ec (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
File "C:\Program Files\ChimeraX 1.4.dev202203170703Windows fatal exception: code 0x\8001010e
bin\lib\site-packages\chimerax\toolbar\providers.pyWindows fatal exception: code 0xWindows fatal exception: code 0x", line 45 in run_provider
8001010e
8001010eWindows fatal exception: code 0x8001010e File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\__init__
Windows fatal exception: code 0xWindows fatal exception: code 0x.py", line 37 in run8001010e
8001010eWindows fatal exception: code 0x8001010e_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\toolshed\__init__.py"
Windows fatal exception: code 0x, line Windows fatal exception: code 0x8001010e8001010e
1286 in
run_Windows fatal exception: code 0xp8001010e
rWindows fatal exception: code 0xWindows fatal exception: code 0x8001010e
8001010eWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0xWindows fatal exception: code 0xo8001010e8001010e
vi
dWindows fatal exception: Windows fatal exception: code 0xercode 0x8001010e
Windows fatal exception: 8001010e
File Windows fatal exception: code 0x"8001010e
C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chicode 0x8001010e
merax\core\toolsWindows fatal exception: hed\info.py"code 0x, line 381 in run_provider
8001010e File "C:\Program Files\ChimeraX 1.4.dev202203
170703\bin\lib\site-packages\chimerax\toolbar\tool.py"Windows fatal exception: code 0x, line 1658001010e in
callback
Windows fatal exception: File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py"code 0x8001010e
, line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004674 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ad4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000c8c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000063c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000264c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003190 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004cdc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052cc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000293c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003544 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000043dc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002510 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000501c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005efc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004354 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052bc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000f5c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000178c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000434 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000056ec (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1286 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004674 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ad4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000c8c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000063c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000264c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003190 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004cdc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052cc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000293c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003544 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000043dc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002510 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000501c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005efc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004354 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052bc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000f5c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000178c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000434 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000056ec (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1286 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004674 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ad4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000c8c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000063c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000264c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003190 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004cdc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052cc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000293c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
[lots of this deleted]
Thread 0x00003544 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000043dc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002510 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000501c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00005efc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004354 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000052bc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000f5c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000178c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000434 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000056ec (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\mouse_modes\mousemodes.py", line 515 in _cursor_position
Windows fatal exception: access violation
===== Log before crash start =====
UCSF ChimeraX version: 1.4.dev202203170703 (2022-03-17)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "G:\\\My Drive\\\My_Projects\\\b2AR-
> Gs\\\Presentations\\\09072022_Purple\\\Combined\\\3DVA\\\Models\\\Model_Series6_Zoom.cxs"
Log from Mon Sep 12 08:05:39 2022UCSF ChimeraX version: 1.4.dev202203170703
(2022-03-17)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "G:\\\My Drive\\\My_Projects\\\b2AR-
> Gs\\\Presentations\\\09072022_Purple\\\Combined\\\3DVA\\\Models\\\Model_Series4_Zoom.cxs"
Log from Sat Sep 10 06:05:29 2022UCSF ChimeraX version: 1.4.dev202203170703
(2022-03-17)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Model_Series.cxs"
Log from Fri Sep 9 09:36:18 2022 Startup Errors
---
error | Bundle 'ChimeraX-ISOLDE' custom initialization failed
warning | Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 484, in get_module
m = importlib.import_module(self.package_name)
File "C:\Program Files\ChimeraX
1.4.dev202203170703\bin\lib\importlib\\__init__.py", line 127, in
import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "", line 1030, in _gcd_import
File "", line 1007, in _find_and_load
File "", line 986, in _find_and_load_unlocked
File "", line 680, in _load_unlocked
File "", line 850, in exec_module
File "", line 228, in _call_with_frames_removed
File "C:\Users\mpapa\AppData\Local\UCSF\ChimeraX\1.4\site-
packages\chimerax\isolde\\__init__.py", line 51, in
__version__ = _version()
File "C:\Users\mpapa\AppData\Local\UCSF\ChimeraX\1.4\site-
packages\chimerax\isolde\\__init__.py", line 49, in _version
return pkg_resources.require('ChimeraX-ISOLDE')[0].version
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-
packages\pkg_resources\\__init__.py", line 891, in require
needed = self.resolve(parse_requirements(requirements))
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-
packages\pkg_resources\\__init__.py", line 782, in resolve
raise VersionConflict(dist, req).with_context(dependent_req)
pkg_resources.ContextualVersionConflict: (ChimeraX-AtomicLibrary 6.1.1
(c:\program files\chimerax 1.4.dev202203170703\bin\lib\site-packages),
Requirement.parse('ChimeraX-AtomicLibrary~=4.2'), {'ChimeraX-ISOLDE'})
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 359, in initialize
api = self._get_api(session.logger)
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 503, in _get_api
m = self.get_module()
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 486, in get_module
raise ToolshedError("Error importing bundle %s's module: %s" % (self.name,
str(e)))
chimerax.core.toolshed.ToolshedError: Error importing bundle ChimeraX-ISOLDE's
module: (ChimeraX-AtomicLibrary 6.1.1 (c:\program files\chimerax
1.4.dev202203170703\bin\lib\site-packages), Requirement.parse('ChimeraX-
AtomicLibrary~=4.2'), {'ChimeraX-ISOLDE'})
> lighting soft
> set bgColor white
> graphics silhouettes true
UCSF ChimeraX version: 1.4.dev202203170703 (2022-03-17)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/00_frame_HR_J804.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/01_frame_HR_J803.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/02_frame_HR_J802.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/03_frame_HR_J801.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/04_frame_HR_J800.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/05_frame_HR_J799.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/06_frame_HR_J798.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/07_frame_HR_J797.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/08_frame_HR_J796.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/09_frame_HR_J795.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/10_frame_HR_J794.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/11_frame_HR_J793.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/12_frame_HR_J792.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/13_frame_HR_J791.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/14_frame_HR_J790.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/15_frame_HR_J789.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/16_frame_HR_J788.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/17_frame_HR_J787.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/18_frame_HR_J786.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/19_frame_HR_J785.pdb"
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/HighRes_models/All/03_frame_HR_J801.pdb
---
warning | Start residue of secondary structure not found: HELIX 1 1 GLY R 35
LYS R 60 1 26
Chain information for 00_frame_HR_J804.pdb #1
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 01_frame_HR_J803.pdb #2
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 02_frame_HR_J802.pdb #3
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 03_frame_HR_J801.pdb #4
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 04_frame_HR_J800.pdb #5
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 05_frame_HR_J799.pdb #6
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 06_frame_HR_J798.pdb #7
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 07_frame_HR_J797.pdb #8
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 08_frame_HR_J796.pdb #9
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 09_frame_HR_J795.pdb #10
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 10_frame_HR_J794.pdb #11
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 11_frame_HR_J793.pdb #12
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 12_frame_HR_J792.pdb #13
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 13_frame_HR_J791.pdb #14
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 14_frame_HR_J790.pdb #15
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 15_frame_HR_J789.pdb #16
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 16_frame_HR_J788.pdb #17
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 17_frame_HR_J787.pdb #18
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 18_frame_HR_J786.pdb #19
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 19_frame_HR_J785.pdb #20
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
> dssp
> select /R
39848 atoms, 40866 bonds, 35 pseudobonds, 5390 residues, 40 models selected
> color sel #cd5aff
> select /A
38949 atoms, 39671 bonds, 63 pseudobonds, 5208 residues, 40 models selected
> color sel #daa520
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> color sel #ff8c00
> select /B
48778 atoms, 49708 bonds, 10 pseudobonds, 6650 residues, 30 models selected
> color sel #89bdd5
> select /G
6781 atoms, 6899 bonds, 1021 residues, 20 models selected
> color sel #27706a
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color sel #00c85d
> dssp
> cartoon style xsection barbell modeHelix default
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 340 atom styles
> size sel atomRadius 1.1
Changed 340 atom radii
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 640 atom styles
> size sel atomRadius 1.1
Changed 640 atom radii
> lighting soft
> select clear
> show #1 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//00_804.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #1 target m
> show #2 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//01_803.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #2 target m
> show #3 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//02_802.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #3 target m
> show #4 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/03_801.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #4 target m
> show #5 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/04_800.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #5 target m
> show #6 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/05_799.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #6 target m
> show #7 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/06_798.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #7 target m
> show #8 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/07_797.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #8 target m
> show #9 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/08_796.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #9 target m
> show #12 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/09_795.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #12 target m
> show #13 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/10_794.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #13 target m
> show #14 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/11_793.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #14 target m
> show #15 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/12_792.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #15 target m
> show #16 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/13_791.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #16 target m
> show #17 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/14_790.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #17 target m
> show #18 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/15_789.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #18 target m
> show #19 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/16_788.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #19 target m
> show #20 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/17_787.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #20 target m
> show #21 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/18_786.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #21 target m
> show #22 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/19_785.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #22 target m
> hide #20 target m
> hide #!10 models
> hide #!11 models
> show #1 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//00_804.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #1 target m
> show #2 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//01_803.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #2 target m
> show #3 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//02_802.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #3 target m
> show #4 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/03_801.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #4 target m
> show #5 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/04_800.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #5 target m
> show #6 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/05_799.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #6 target m
> show #7 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/06_798.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #7 target m
> show #8 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/07_797.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #8 target m
> show #9 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/08_796.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #9 target m
> show #10 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/09_795.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #10 target m
> show #11 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/10_794.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #11 target m
> show #12 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/11_793.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #12 target m
> show #13 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/12_792.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #13 target m
> show #14 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/13_791.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #14 target m
> show #15 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/14_790.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #15 target m
> show #16 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/15_789.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #16 target m
> show #17 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/16_788.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #17 target m
> show #18 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/17_787.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #18 target m
> show #19 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/18_786.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #19 target m
> show #20 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/19_785.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #20 target m
> close #2#1,3-20
> open "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/00_frame_J804_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/01_frame_J803_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/02_frame_J802_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/03_frame_J801_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/04_frame_J800_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/05_frame_J799_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/06_frame_J798_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/07_frame_J797_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/08_frame_J796_Bld_AltA_70percent.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/09_frame_J795_Bld_AltB_45percent.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/10_frame_J794_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/11_frame_J793_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/12_frame_J792_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/13_frame_J791_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/14_frame_J790_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/15_frame_J789_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/16_frame_J788_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/17_frame_J787_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/18_frame_J786_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/19_frame_J785_Bld.pdb"
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/05_frame_J799_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 21 21 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 22 22 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 23 23 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 24 24 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 25 25 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/06_frame_J798_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 26 26 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 27 27 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 28 28 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 29 29 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 30 30 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/07_frame_J797_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 21 21 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 22 22 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 23 23 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 24 24 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 25 25 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/08_frame_J796_Bld_AltA_70percent.pdb
---
warnings | Start residue of secondary structure not found: HELIX 21 21 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 22 22 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 23 23 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 24 24 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 25 25 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/09_frame_J795_Bld_AltB_45percent.pdb
---
warnings | Start residue of secondary structure not found: HELIX 19 19 ARG C
13 ARG C 38 1 26
Start residue of secondary structure not found: HELIX 20 20 LYS C 53 ARG C 61
1 9
Start residue of secondary structure not found: HELIX 21 21 LYS C 233 GLU C
236 1 4
Start residue of secondary structure not found: HELIX 22 22 ARG C 265 TRP C
277 1 13
Start residue of secondary structure not found: HELIX 23 23 GLN C 294 LEU C
302 1 9
10 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/10_frame_J794_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 12 12 SER D
54 LYS D 58 1 5
Start residue of secondary structure not found: HELIX 13 13 ARG D 265 TRP D
277 1 13
Start residue of secondary structure not found: HELIX 14 14 GLN D 294 ALA D
303 1 10
Start residue of secondary structure not found: HELIX 15 15 ILE D 308 TYR D
311 1 4
Start residue of secondary structure not found: HELIX 16 16 PRO D 313 ARG D
317 1 5
8 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/11_frame_J793_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 14 14 ARG C
13 ARG C 38 1 26
Start residue of secondary structure not found: HELIX 15 15 LYS C 53 ARG C 61
1 9
Start residue of secondary structure not found: HELIX 16 16 TRP C 234 GLU C
236 1 3
Start residue of secondary structure not found: HELIX 17 17 ARG C 265 TRP C
277 1 13
Start residue of secondary structure not found: HELIX 18 18 GLN C 294 LEU C
302 1 9
10 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/12_frame_J792_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 12 12 SER D
54 LYS D 58 1 5
Start residue of secondary structure not found: HELIX 13 13 ARG D 265 TRP D
277 1 13
Start residue of secondary structure not found: HELIX 14 14 GLN D 294 ALA D
303 1 10
Start residue of secondary structure not found: HELIX 15 15 ILE D 308 TYR D
311 1 4
Start residue of secondary structure not found: HELIX 16 16 PRO D 313 ARG D
317 1 5
8 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/13_frame_J791_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 30 30 ARG D
13 VAL D 36 1 24
Start residue of secondary structure not found: HELIX 31 31 TYR D 37 ALA D 39
1 3
Start residue of secondary structure not found: HELIX 32 32 LYS D 53 LEU D 63
1 11
Start residue of secondary structure not found: HELIX 33 33 ARG D 265 TRP D
277 1 13
Start residue of secondary structure not found: HELIX 34 34 GLN D 294 LEU D
302 1 9
9 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/14_frame_J790_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 17 17 PRO D
122 SER D 133 1 12
Start residue of secondary structure not found: HELIX 18 18 ALA D 152 GLU D
155 1 4
Start residue of secondary structure not found: HELIX 19 19 GLU D 157 GLY D
158 1 2
Start residue of secondary structure not found: HELIX 20 20 LYS D 181 LYS D
186 1 6
Start residue of secondary structure not found: HELIX 21 21 ASP D 194 GLN D
195 1 2
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/15_frame_J789_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 15 15 LYS E
58 LYS E 58 1 1
Start residue of secondary structure not found: HELIX 16 16 ILE E 62 ILE E 62
1 1
Start residue of secondary structure not found: HELIX 17 17 ASP E 196 ARG E
199 1 4
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/16_frame_J788_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 32 32 PRO D
122 SER D 133 1 12
Start residue of secondary structure not found: HELIX 33 33 ALA D 152 GLU D
155 1 4
Start residue of secondary structure not found: HELIX 34 34 GLU D 157 GLY D
158 1 2
Start residue of secondary structure not found: HELIX 35 35 LYS D 181 LYS D
186 1 6
Start residue of secondary structure not found: HELIX 36 36 ASP D 194 GLN D
195 1 2
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/17_frame_J787_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 29 29 ASP D
79 MET D 82 1 4
Start residue of secondary structure not found: HELIX 30 30 GLN D 142 LEU D
144 1 3
Start residue of secondary structure not found: HELIX 31 31 LEU D 230 ASP D
234 1 5
Start residue of secondary structure not found: HELIX 32 32 PRO E 330 GLU E
338 1 9
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/18_frame_J786_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 29 29 ASP D
79 MET D 82 1 4
Start residue of secondary structure not found: HELIX 30 30 GLN D 142 LEU D
144 1 3
Start residue of secondary structure not found: HELIX 31 31 LEU D 230 ASP D
234 1 5
Start residue of secondary structure not found: HELIX 32 32 PRO E 330 GLU E
338 1 9
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/19_frame_J785_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 30 30 THR D
56 ALA D 59 1 4
Start residue of secondary structure not found: HELIX 31 31 ASP D 79 VAL D 86
1 8
Start residue of secondary structure not found: HELIX 32 32 TYR D 141 LEU D
144 1 4
Start residue of secondary structure not found: HELIX 33 33 LYS D 147 ILE D
154 1 8
Start residue of secondary structure not found: HELIX 34 34 LEU D 230 SER D
236 1 7
1 messages similar to the above omitted
Chain information for 00_frame_J804_Bld.pdb #1
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 01_frame_J803_Bld.pdb #2
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 02_frame_J802_Bld.pdb #3
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 03_frame_J801_Bld.pdb #4
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 04_frame_J800_Bld.pdb #5
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 05_frame_J799_Bld.pdb #6
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 06_frame_J798_Bld.pdb #7
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 07_frame_J797_Bld.pdb #8
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 08_frame_J796_Bld_AltA_70percent.pdb #9
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 09_frame_J795_Bld_AltB_45percent.pdb #10
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 10_frame_J794_Bld.pdb #11
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 11_frame_J793_Bld.pdb #12
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 12_frame_J792_Bld.pdb #13
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 13_frame_J791_Bld.pdb #14
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 14_frame_J790_Bld.pdb #15
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 15_frame_J789_Bld.pdb #16
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 16_frame_J788_Bld.pdb #17
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 17_frame_J787_Bld.pdb #18
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 18_frame_J786_Bld.pdb #19
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 19_frame_J785_Bld.pdb #20
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
> select /R
40589 atoms, 41611 bonds, 25 pseudobonds, 5485 residues, 40 models selected
> color sel #cd5aff
> select /A
53652 atoms, 54723 bonds, 56 pseudobonds, 7063 residues, 40 models selected
> color sel #daa520
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> color sel #ff8c00
> select /B
48812 atoms, 49743 bonds, 9 pseudobonds, 6652 residues, 29 models selected
> color sel #89bdd5
> select /G
6785 atoms, 6905 bonds, 1021 residues, 20 models selected
> color sel #27706a
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color sel #00c85d
> dssp
> cartoon style xsection barbell modeHelix default
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 340 atom styles
> size sel atomRadius 1.1
Changed 340 atom radii
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 640 atom styles
> size sel atomRadius 1.1
Changed 640 atom radii
> lighting soft
> hide target m
> ~select
Nothing selected
> show #!1 models
> show #!20 models
> hide #!20 models
> hide #!1 models
> show #1 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//00_804.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #1 target m
> show #2 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//01_803.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #2 target m
> show #3 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//02_802.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #3 target m
> show #4 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/03_801.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #4 target m
> show #5 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/04_800.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #5 target m
> show #6 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/05_799.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #6 target m
> show #7 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/06_798.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #7 target m
> show #8 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/07_797.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #8 target m
> show #9 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/08_796.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #9 target m
> show #10 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/09_795.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #10 target m
> show #11 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/10_794.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #11 target m
> show #12 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/11_793.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #12 target m
> show #13 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/12_792.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #13 target m
> show #14 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/13_791.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #14 target m
> show #15 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/14_790.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #15 target m
> show #16 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/15_789.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #16 target m
> show #17 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/16_788.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #17 target m
> show #18 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/17_787.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #18 target m
> show #19 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/18_786.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #19 target m
> show #20 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/19_785.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #20 target m
> windowsize width 701 height 811
QWindowsWindow::setGeometry: Unable to set geometry 2090x1009+8+31 (frame:
2106x1048+0+0) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY1".
Resulting geometry: 1924x1009+8+31 (frame: 1940x1048+0+0) margins: 8, 31, 8, 8
minimum size: 422x323 MINMAXINFO maxSize=0,0 maxpos=0,0 mintrack=438,362
maxtrack=0,0)
> show #!1 models
> show #1 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//00_804.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #1 target m
> show #2 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//01_803.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #2 target m
> show #3 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined//02_802.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #3 target m
> show #4 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/03_801.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #4 target m
> show #5 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/04_800.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #5 target m
> show #6 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/05_799.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #6 target m
> show #7 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/06_798.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #7 target m
> show #8 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/07_797.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #8 target m
> show #9 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/08_796.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #9 target m
> show #10 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/09_795.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #10 target m
> show #11 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/10_794.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #11 target m
> show #12 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/11_793.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #12 target m
> show #13 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/12_792.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #13 target m
> show #14 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/13_791.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #14 target m
> show #15 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/14_790.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #15 target m
> show #16 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/15_789.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #16 target m
> show #17 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/16_788.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #17 target m
> show #18 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/17_787.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #18 target m
> show #19 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/18_786.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #19 target m
> show #20 target m
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/19_785.png" width 701 height 811
> supersample 3 transparentBackground true
> hide #20 target m
> show #!1 models
> ui tool show "Side View"
> mseries slider #1-20
> movie record
> movie encode C:\Users\mpapa/Desktop/movie.mp4 framerate 25.0
Error processing trigger "new frame":
Output directory does not exist: C:\Users\mpapa/Desktop
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Model_Series.cxs"
——— End of log from Fri Sep 9 09:36:18 2022 ———
opened ChimeraX session
> mseries #1-20 slider
Expected a keyword
> mseries slider #1-20
> open "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/00_frame_J804_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/01_frame_J803_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/02_frame_J802_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/03_frame_J801_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/04_frame_J800_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/05_frame_J799_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/06_frame_J798_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/07_frame_J797_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/08_frame_J796_Bld_AltA_70percent.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/08_frame_J796_Bld_AltB_30percent.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/09_frame_J795_Bld_AltA_55percent.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/09_frame_J795_Bld_AltB_45percent.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/10_frame_J794_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/11_frame_J793_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/12_frame_J792_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/13_frame_J791_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/14_frame_J790_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/15_frame_J789_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/16_frame_J788_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/17_frame_J787_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/18_frame_J786_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/19_frame_J785_Bld.pdb"
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/05_frame_J799_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 21 21 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 22 22 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 23 23 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 24 24 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 25 25 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/06_frame_J798_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 26 26 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 27 27 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 28 28 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 29 29 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 30 30 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/07_frame_J797_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 21 21 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 22 22 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 23 23 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 24 24 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 25 25 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/08_frame_J796_Bld_AltA_70percent.pdb
---
warnings | Start residue of secondary structure not found: HELIX 21 21 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 22 22 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 23 23 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 24 24 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 25 25 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/08_frame_J796_Bld_AltB_30percent.pdb
---
warnings | Start residue of secondary structure not found: HELIX 21 21 ALA D
89 MET D 110 1 22
Start residue of secondary structure not found: HELIX 22 22 PRO D 122 SER D
133 1 12
Start residue of secondary structure not found: HELIX 23 23 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 24 24 GLU D 157 GLU D
164 1 8
Start residue of secondary structure not found: HELIX 25 25 SER D 166 GLU D
168 1 3
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/09_frame_J795_Bld_AltA_55percent.pdb
---
warnings | Start residue of secondary structure not found: HELIX 19 19 ARG C
13 ARG C 38 1 26
Start residue of secondary structure not found: HELIX 20 20 LYS C 53 ARG C 61
1 9
Start residue of secondary structure not found: HELIX 21 21 LYS C 233 GLU C
236 1 4
Start residue of secondary structure not found: HELIX 22 22 ARG C 265 TRP C
277 1 13
Start residue of secondary structure not found: HELIX 23 23 GLN C 294 LEU C
302 1 9
10 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/09_frame_J795_Bld_AltB_45percent.pdb
---
warnings | Start residue of secondary structure not found: HELIX 19 19 ARG C
13 ARG C 38 1 26
Start residue of secondary structure not found: HELIX 20 20 LYS C 53 ARG C 61
1 9
Start residue of secondary structure not found: HELIX 21 21 LYS C 233 GLU C
236 1 4
Start residue of secondary structure not found: HELIX 22 22 ARG C 265 TRP C
277 1 13
Start residue of secondary structure not found: HELIX 23 23 GLN C 294 LEU C
302 1 9
10 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/10_frame_J794_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 12 12 SER D
54 LYS D 58 1 5
Start residue of secondary structure not found: HELIX 13 13 ARG D 265 TRP D
277 1 13
Start residue of secondary structure not found: HELIX 14 14 GLN D 294 ALA D
303 1 10
Start residue of secondary structure not found: HELIX 15 15 ILE D 308 TYR D
311 1 4
Start residue of secondary structure not found: HELIX 16 16 PRO D 313 ARG D
317 1 5
8 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/11_frame_J793_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 14 14 ARG C
13 ARG C 38 1 26
Start residue of secondary structure not found: HELIX 15 15 LYS C 53 ARG C 61
1 9
Start residue of secondary structure not found: HELIX 16 16 TRP C 234 GLU C
236 1 3
Start residue of secondary structure not found: HELIX 17 17 ARG C 265 TRP C
277 1 13
Start residue of secondary structure not found: HELIX 18 18 GLN C 294 LEU C
302 1 9
10 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/12_frame_J792_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 12 12 SER D
54 LYS D 58 1 5
Start residue of secondary structure not found: HELIX 13 13 ARG D 265 TRP D
277 1 13
Start residue of secondary structure not found: HELIX 14 14 GLN D 294 ALA D
303 1 10
Start residue of secondary structure not found: HELIX 15 15 ILE D 308 TYR D
311 1 4
Start residue of secondary structure not found: HELIX 16 16 PRO D 313 ARG D
317 1 5
8 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/13_frame_J791_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 30 30 ARG D
13 VAL D 36 1 24
Start residue of secondary structure not found: HELIX 31 31 TYR D 37 ALA D 39
1 3
Start residue of secondary structure not found: HELIX 32 32 LYS D 53 LEU D 63
1 11
Start residue of secondary structure not found: HELIX 33 33 ARG D 265 TRP D
277 1 13
Start residue of secondary structure not found: HELIX 34 34 GLN D 294 LEU D
302 1 9
9 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/14_frame_J790_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 17 17 PRO D
122 SER D 133 1 12
Start residue of secondary structure not found: HELIX 18 18 ALA D 152 GLU D
155 1 4
Start residue of secondary structure not found: HELIX 19 19 GLU D 157 GLY D
158 1 2
Start residue of secondary structure not found: HELIX 20 20 LYS D 181 LYS D
186 1 6
Start residue of secondary structure not found: HELIX 21 21 ASP D 194 GLN D
195 1 2
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/15_frame_J789_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 15 15 LYS E
58 LYS E 58 1 1
Start residue of secondary structure not found: HELIX 16 16 ILE E 62 ILE E 62
1 1
Start residue of secondary structure not found: HELIX 17 17 ASP E 196 ARG E
199 1 4
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/16_frame_J788_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 32 32 PRO D
122 SER D 133 1 12
Start residue of secondary structure not found: HELIX 33 33 ALA D 152 GLU D
155 1 4
Start residue of secondary structure not found: HELIX 34 34 GLU D 157 GLY D
158 1 2
Start residue of secondary structure not found: HELIX 35 35 LYS D 181 LYS D
186 1 6
Start residue of secondary structure not found: HELIX 36 36 ASP D 194 GLN D
195 1 2
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/17_frame_J787_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 29 29 ASP D
79 MET D 82 1 4
Start residue of secondary structure not found: HELIX 30 30 GLN D 142 LEU D
144 1 3
Start residue of secondary structure not found: HELIX 31 31 LEU D 230 ASP D
234 1 5
Start residue of secondary structure not found: HELIX 32 32 PRO E 330 GLU E
338 1 9
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/18_frame_J786_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 29 29 ASP D
79 MET D 82 1 4
Start residue of secondary structure not found: HELIX 30 30 GLN D 142 LEU D
144 1 3
Start residue of secondary structure not found: HELIX 31 31 LEU D 230 ASP D
234 1 5
Start residue of secondary structure not found: HELIX 32 32 PRO E 330 GLU E
338 1 9
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/19_frame_J785_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 30 30 THR D
56 ALA D 59 1 4
Start residue of secondary structure not found: HELIX 31 31 ASP D 79 VAL D 86
1 8
Start residue of secondary structure not found: HELIX 32 32 TYR D 141 LEU D
144 1 4
Start residue of secondary structure not found: HELIX 33 33 LYS D 147 ILE D
154 1 8
Start residue of secondary structure not found: HELIX 34 34 LEU D 230 SER D
236 1 7
1 messages similar to the above omitted
Chain information for 00_frame_J804_Bld.pdb #21
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 01_frame_J803_Bld.pdb #22
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 02_frame_J802_Bld.pdb #23
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 03_frame_J801_Bld.pdb #24
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 04_frame_J800_Bld.pdb #25
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 05_frame_J799_Bld.pdb #26
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 06_frame_J798_Bld.pdb #27
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 07_frame_J797_Bld.pdb #28
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 08_frame_J796_Bld_AltA_70percent.pdb #29
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 08_frame_J796_Bld_AltB_30percent.pdb #30
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 09_frame_J795_Bld_AltA_55percent.pdb #31
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 09_frame_J795_Bld_AltB_45percent.pdb #32
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 10_frame_J794_Bld.pdb #33
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 11_frame_J793_Bld.pdb #34
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 12_frame_J792_Bld.pdb #35
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 13_frame_J791_Bld.pdb #36
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 14_frame_J790_Bld.pdb #37
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 15_frame_J789_Bld.pdb #38
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 16_frame_J788_Bld.pdb #39
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 17_frame_J787_Bld.pdb #40
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 18_frame_J786_Bld.pdb #41
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 19_frame_J785_Bld.pdb #42
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
> mseries slider #21-42
> hide #!19 models
> close #1-42
> open "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/New_Dock/00_frame_J804_Bld-
> coot-0.pdb" "G:/My Drive/My_Projects/b2AR-
> Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/New_Dock/01_frame_J803_Bld-
> coot-0.pdb" "G:/My Drive/My_Projects/b2AR-
> Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/New_Dock/02_frame_J802_Bld-
> coot-0.pdb" "G:/My Drive/My_Projects/b2AR-
> Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/New_Dock/03_frame_J801_Bld-
> coot-0.pdb" "G:/My Drive/My_Projects/b2AR-
> Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/New_Dock/04_frame_J800_Bld-
> coot-0.pdb" "G:/My Drive/My_Projects/b2AR-
> Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/New_Dock/05_frame_J799_Bld-
> coot-0.pdb"
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/New_Dock/05_frame_J799_Bld-
coot-0.pdb
---
warnings | Start residue of secondary structure not found: HELIX 21 21 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 22 22 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 23 23 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 24 24 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 25 25 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Chain information for 00_frame_J804_Bld-coot-0.pdb #1
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 01_frame_J803_Bld-coot-0.pdb #2
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 02_frame_J802_Bld-coot-0.pdb #3
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 03_frame_J801_Bld-coot-0.pdb #4
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 04_frame_J800_Bld-coot-0.pdb #5
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 05_frame_J799_Bld-coot-0.pdb #6
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
> hide #!5 models
> hide #!4 models
> hide #!3 models
> hide #!2 models
> dssp
> open "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/06_frame_J798_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/07_frame_J797_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/08_frame_J796_Bld_AltA_70percent.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/09_frame_J795_Bld_AltA_55percent.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/10_frame_J794_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/11_frame_J793_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/12_frame_J792_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/13_frame_J791_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/14_frame_J790_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/15_frame_J789_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/16_frame_J788_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/17_frame_J787_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/18_frame_J786_Bld.pdb"
> "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/19_frame_J785_Bld.pdb"
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/06_frame_J798_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 26 26 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 27 27 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 28 28 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 29 29 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 30 30 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/07_frame_J797_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 21 21 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 22 22 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 23 23 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 24 24 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 25 25 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/08_frame_J796_Bld_AltA_70percent.pdb
---
warnings | Start residue of secondary structure not found: HELIX 21 21 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 22 22 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 23 23 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 24 24 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 25 25 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/09_frame_J795_Bld_AltA_55percent.pdb
---
warnings | Start residue of secondary structure not found: HELIX 19 19 ARG C
13 ARG C 38 1 26
Start residue of secondary structure not found: HELIX 20 20 LYS C 53 ARG C 61
1 9
Start residue of secondary structure not found: HELIX 21 21 LYS C 233 GLU C
236 1 4
Start residue of secondary structure not found: HELIX 22 22 ARG C 265 TRP C
277 1 13
Start residue of secondary structure not found: HELIX 23 23 GLN C 294 LEU C
302 1 9
10 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/10_frame_J794_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 12 12 SER D
54 LYS D 58 1 5
Start residue of secondary structure not found: HELIX 13 13 ARG D 265 TRP D
277 1 13
Start residue of secondary structure not found: HELIX 14 14 GLN D 294 ALA D
303 1 10
Start residue of secondary structure not found: HELIX 15 15 ILE D 308 TYR D
311 1 4
Start residue of secondary structure not found: HELIX 16 16 PRO D 313 ARG D
317 1 5
8 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/11_frame_J793_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 14 14 ARG C
13 ARG C 38 1 26
Start residue of secondary structure not found: HELIX 15 15 LYS C 53 ARG C 61
1 9
Start residue of secondary structure not found: HELIX 16 16 TRP C 234 GLU C
236 1 3
Start residue of secondary structure not found: HELIX 17 17 ARG C 265 TRP C
277 1 13
Start residue of secondary structure not found: HELIX 18 18 GLN C 294 LEU C
302 1 9
10 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/12_frame_J792_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 12 12 SER D
54 LYS D 58 1 5
Start residue of secondary structure not found: HELIX 13 13 ARG D 265 TRP D
277 1 13
Start residue of secondary structure not found: HELIX 14 14 GLN D 294 ALA D
303 1 10
Start residue of secondary structure not found: HELIX 15 15 ILE D 308 TYR D
311 1 4
Start residue of secondary structure not found: HELIX 16 16 PRO D 313 ARG D
317 1 5
8 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/13_frame_J791_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 30 30 ARG D
13 VAL D 36 1 24
Start residue of secondary structure not found: HELIX 31 31 TYR D 37 ALA D 39
1 3
Start residue of secondary structure not found: HELIX 32 32 LYS D 53 LEU D 63
1 11
Start residue of secondary structure not found: HELIX 33 33 ARG D 265 TRP D
277 1 13
Start residue of secondary structure not found: HELIX 34 34 GLN D 294 LEU D
302 1 9
9 messages similar to the above omitted
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/14_frame_J790_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 17 17 PRO D
122 SER D 133 1 12
Start residue of secondary structure not found: HELIX 18 18 ALA D 152 GLU D
155 1 4
Start residue of secondary structure not found: HELIX 19 19 GLU D 157 GLY D
158 1 2
Start residue of secondary structure not found: HELIX 20 20 LYS D 181 LYS D
186 1 6
Start residue of secondary structure not found: HELIX 21 21 ASP D 194 GLN D
195 1 2
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/15_frame_J789_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 15 15 LYS E
58 LYS E 58 1 1
Start residue of secondary structure not found: HELIX 16 16 ILE E 62 ILE E 62
1 1
Start residue of secondary structure not found: HELIX 17 17 ASP E 196 ARG E
199 1 4
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/16_frame_J788_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 32 32 PRO D
122 SER D 133 1 12
Start residue of secondary structure not found: HELIX 33 33 ALA D 152 GLU D
155 1 4
Start residue of secondary structure not found: HELIX 34 34 GLU D 157 GLY D
158 1 2
Start residue of secondary structure not found: HELIX 35 35 LYS D 181 LYS D
186 1 6
Start residue of secondary structure not found: HELIX 36 36 ASP D 194 GLN D
195 1 2
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/17_frame_J787_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 29 29 ASP D
79 MET D 82 1 4
Start residue of secondary structure not found: HELIX 30 30 GLN D 142 LEU D
144 1 3
Start residue of secondary structure not found: HELIX 31 31 LEU D 230 ASP D
234 1 5
Start residue of secondary structure not found: HELIX 32 32 PRO E 330 GLU E
338 1 9
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/18_frame_J786_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 29 29 ASP D
79 MET D 82 1 4
Start residue of secondary structure not found: HELIX 30 30 GLN D 142 LEU D
144 1 3
Start residue of secondary structure not found: HELIX 31 31 LEU D 230 ASP D
234 1 5
Start residue of secondary structure not found: HELIX 32 32 PRO E 330 GLU E
338 1 9
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/19_frame_J785_Bld.pdb
---
warnings | Start residue of secondary structure not found: HELIX 30 30 THR D
56 ALA D 59 1 4
Start residue of secondary structure not found: HELIX 31 31 ASP D 79 VAL D 86
1 8
Start residue of secondary structure not found: HELIX 32 32 TYR D 141 LEU D
144 1 4
Start residue of secondary structure not found: HELIX 33 33 LYS D 147 ILE D
154 1 8
Start residue of secondary structure not found: HELIX 34 34 LEU D 230 SER D
236 1 7
1 messages similar to the above omitted
Chain information for 06_frame_J798_Bld.pdb #7
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 07_frame_J797_Bld.pdb #8
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 08_frame_J796_Bld_AltA_70percent.pdb #9
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 09_frame_J795_Bld_AltA_55percent.pdb #10
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 10_frame_J794_Bld.pdb #11
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 11_frame_J793_Bld.pdb #12
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 12_frame_J792_Bld.pdb #13
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 13_frame_J791_Bld.pdb #14
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 14_frame_J790_Bld.pdb #15
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 15_frame_J789_Bld.pdb #16
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 16_frame_J788_Bld.pdb #17
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 17_frame_J787_Bld.pdb #18
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 18_frame_J786_Bld.pdb #19
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 19_frame_J785_Bld.pdb #20
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
> mseries slider #1-20
> show #!5 models
> show #!6 models
> show #!7 models
> show #!8 models
> close #7
> open "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/New_Dock/06_frame_J798_Bld-
> coot-0.pdb"
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/New_Dock/06_frame_J798_Bld-
coot-0.pdb
---
warnings | Start residue of secondary structure not found: HELIX 26 26 ALA D
89 ALA D 109 1 21
Start residue of secondary structure not found: HELIX 27 27 PRO D 122 VAL D
134 1 13
Start residue of secondary structure not found: HELIX 28 28 PRO D 144 GLU D
155 1 12
Start residue of secondary structure not found: HELIX 29 29 GLU D 157 ARG D
165 1 9
Start residue of secondary structure not found: HELIX 30 30 GLN D 176 ASP D
180 1 5
2 messages similar to the above omitted
Chain information for 06_frame_J798_Bld-coot-0.pdb #7
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
> mseries slider #1-20sel /R; color sel #cd5aff; sel /A; color sel #daa520;
> sel /L; color sel #ff8c00; sel /B; color sel #89bdd5; sel /G; color sel
> #27706a; sel /N; color sel #00c85d;
Missing or invalid "models" argument: only initial part "#1-20" of atom
specifier valid
> dssp
> cartoon style xsection barbell modeHelix default
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 340 atom styles
> size sel atomRadius 1.1
Changed 340 atom radii
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 640 atom styles
> size sel atomRadius 1.1
Changed 640 atom radii
> lighting soft
> select /R
40589 atoms, 41611 bonds, 25 pseudobonds, 5485 residues, 40 models selected
> color sel #cd5aff
> select /A
53558 atoms, 54628 bonds, 57 pseudobonds, 7054 residues, 40 models selected
> color sel #daa520
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> color sel #ff8c00
> select /B
48812 atoms, 49743 bonds, 9 pseudobonds, 6652 residues, 29 models selected
> color sel #89bdd5
> select /G
6785 atoms, 6905 bonds, 1021 residues, 20 models selected
> color sel #27706a
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color sel #00c85d
> dssp
> cartoon style xsection barbell modeHelix default
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 340 atom styles
> size sel atomRadius 1.1
Changed 340 atom radii
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 640 atom styles
> size sel atomRadius 1.1
Changed 640 atom radii
> lighting soft
> show #1-20 target m
> select /R
40589 atoms, 41611 bonds, 25 pseudobonds, 5485 residues, 40 models selected
> color sel #cd5aff
> select /A
53558 atoms, 54628 bonds, 57 pseudobonds, 7054 residues, 40 models selected
> color sel #daa520
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> color sel #ff8c00
> select /B
48812 atoms, 49743 bonds, 9 pseudobonds, 6652 residues, 29 models selected
> color sel #89bdd5
> select /G
6785 atoms, 6905 bonds, 1021 residues, 20 models selected
> color sel #27706a
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color sel #00c85d
> dssp
> cartoon style xsection barbell modeHelix default
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 340 atom styles
> size sel atomRadius 1.1
Changed 340 atom radii
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 640 atom styles
> size sel atomRadius 1.1
Changed 640 atom radii
> lighting soft
> mseries slider #1-20
> select clear
> movie record
> coordset #1-20 loop 8 bounce true
> coordset #1-20
> coordset slider #1-20
> coordset #1-20 frame computeSs true
Expected a keyword
> coordset #1-20 frame 5 computeSs true
Expected a keyword
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20, 19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
[Repeated 1 time(s)]
> mseries #1-20, mseries #19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
Missing or invalid "models" argument: only initial part "#1-20" of atom
specifier valid
> mseries #1-20
> mseries #19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 15 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> movie record
> mseries #1-20
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 30 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> movie record
> mseries #1-20
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 5 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> movie record
> mseries #1-20
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 2 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> movie record
> mseries #1-20
> mseries #20-1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 2 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 2 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 2 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 2 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 3 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> cartoon style (#1 & coil) xsection oval
> cartoon style #1 xsection barbell modeHelix default
> cartoon style #1 modeHelix tube sides 20
> mseries #1-20
> select #1-20
150726 atoms, 153927 bonds, 91 pseudobonds, 20254 residues, 40 models selected
> cartoon style #1 modeHelix tube sides 20
> cartoon style sel modeHelix tube sides 20
> mseries #1-20
> cartoon style (#!20 & sel & coil) xsection oval
> cartoon style (#!20 & sel) xsection barbell modeHelix default
> mseries #1-20
> cartoon style sel xsection barbell modeHelix default
> mseries #1-20
> lighting full
> lighting simple
> lighting flat
> lighting full
> lighting shadows false
> select clear
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 3 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> ui tool show "Side View"
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 3 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> ui tool show "Color Actions"
> color (#!1 & sel) #00ff00ff
> color (#!1 & sel) #1dff19ff
> color (#!1 & sel) #24ff19ff
> color (#!1 & sel) #3eff29ff
> color (#!1 & sel) #41ff2cff
> color (#!1 & sel) #43ff2eff
> color (#!1 & sel) #40ff2bff
> color (#!1 & sel) #38ff22ff
> color (#!1 & sel) #30dc1dff
> color (#!1 & sel) #32e11eff
> color (#!1 & sel) #32e21eff
> color (#!1 & sel) #33e61fff
> color (#!1 & sel) #33e71fff
> color (#!1 & sel) #31de1eff
> color (#!1 & sel) #2fd51cff
> select clear
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> select #1/N:0@C2'
1 atom, 1 residue, 1 model selected
> ui tool show "Selection Inspector"
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color sel #2fd51c
> movie record
Already recording a movie
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> select clear
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 3 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 3 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> mseries #1-20
> silhouettes
Unknown command: silhouettes
> ui tool show "Color Actions"
> ui tool show "Basic Actions"
> graphics silhouettes false
> graphics silhouettes true
> graphics
Background color: 100,100,100
> graphics silhouettes
Current silhouette settings:
enabled: True
width: 1
color: 0,0,0
depth jump: 0.03
> ui tool show "Color Actions"
> color #20 #c2d5c0ff
> color #20 #d5d5bfff
> color #20 #d5d4bfff
> color #20 #d5cfbfff
> color #20 #cfd5caff
> color #20 #d2d5d2ff
> color #20 #cdd1d5ff
> color #20 #d2cdd5ff
> color #20 #d0cfd5ff
> color #20 #d1d0d5ff
> color #20 #d2d2d5ff
> color #20 #d2d3d5ff
> color #20 #d2d4d5ff
> color #20 #cfd5d0ff
> color #20 #d5d4cfff
> color #20 #d5d1cfff
> color #20 #bdb9b8ff
> color #20 #bcb8b7ff
> color #20 #b6b2b1ff
> color #20 #b1adacff
> color #20 #aba7a6ff
> color #20 #a7a4a2ff
> undo
[Repeated 1 time(s)]
> graphics silhouettes color 50,7,173
> graphics silhouettes color 50,7,154
> graphics silhouettes color grey
> select /R
40589 atoms, 41611 bonds, 25 pseudobonds, 5485 residues, 40 models selected
> color sel #cd5aff
> select /A
53558 atoms, 54628 bonds, 57 pseudobonds, 7054 residues, 40 models selected
> color sel #daa520
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> color sel #ff8c00
> select /B
48812 atoms, 49743 bonds, 9 pseudobonds, 6652 residues, 29 models selected
> color sel #89bdd5
> select /G
6785 atoms, 6905 bonds, 1021 residues, 20 models selected
> color sel #27706a
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color sel #00c85d
> select clear
> graphics silhouettes width 2
> graphics silhouettes width 1
> graphics silhouettes width 1.5
> graphics silhouettes width 1
> lighting soft
> lighting full
> graphics silhouettes color dark grey
> graphics silhouettes color black
> graphics silhouettes color darkgray
> redo
> select clear
> graphics silhouettes color black
> colors
Unknown command: colors
> color list
No custom colors.
248 builtin colors: alice blue
, aliceblue
, antique white
, antiquewhite
, aqua
, aquamarine
, azure
, beige
, bisque
, black
, blanched almond
, blanchedalmond
, blue
, blue violet
, blueviolet
, brown
, burly wood
, burlywood
, cadet blue
, cadetblue
, chartreuse
, chocolate
, coral
, cornflower blue
, cornflowerblue
, cornsilk
, crimson
, cyan
, dark blue
, dark cyan
, dark goldenrod
, dark gray
, dark green
, dark grey
, dark khaki
, dark magenta
, dark olive green
, dark orange
, dark orchid
, dark red
, dark salmon
, dark sea green
, dark seagreen
, dark slate blue
, dark slate gray
, dark slate grey
, dark turquoise
, dark violet
, darkblue
, darkcyan
, darkgoldenrod
, darkgray
, darkgreen
, darkgrey
, darkkhaki
, darkmagenta
, darkolivegreen
, darkorange
, darkorchid
, darkred
, darksalmon
, darkseagreen
, darkslateblue
, darkslategray
, darkslategrey
, darkturquoise
, darkviolet
, deep pink
, deep sky blue
, deep skyblue
, deeppink
, deepskyblue
, dim gray
, dim grey
, dimgray
, dimgrey
, dodger blue
, dodgerblue
, fire brick
, firebrick
, floral white
, floralwhite
, forest green
, forestgreen
, fuchsia
, gainsboro
, ghost white
, ghostwhite
, gold
, goldenrod
, gray
, green
, green yellow
, greenyellow
, grey
, honeydew
, hot pink
, hotpink
, indian red
, indianred
, indigo
, ivory
, khaki
, lavender
, lavender blush
, lavenderblush
, lawn green
, lawngreen
, lemon chiffon
, lemonchiffon
, light blue
, light coral
, light cyan
, light goldenrod yellow
, light gray
, light green
, light grey
, light pink
, light salmon
, light sea green
, light seagreen
, light sky blue
, light skyblue
, light slate gray
, light slate grey
, light steel blue
, light yellow
, lightblue
, lightcoral
, lightcyan
, lightgoldenrodyellow
, lightgray
, lightgreen
, lightgrey
, lightpink
, lightsalmon
, lightseagreen
, lightskyblue
, lightslategray
, lightslategrey
, lightsteelblue
, lightyellow
, lime
, lime green
, limegreen
, linen
, magenta
, maroon
, medium aquamarine
, medium blue
, medium orchid
, medium purple
, medium sea green
, medium seagreen
, medium slate blue
, medium spring green
, medium turquoise
, medium violet red
, mediumaquamarine
, mediumblue
, mediumorchid
, mediumpurple
, mediumseagreen
, mediumslateblue
, mediumspringgreen
, mediumturquoise
, mediumvioletred
, midnight blue
, midnightblue
, mint cream
, mintcream
, misty rose
, mistyrose
, moccasin
, navajo white
, navajowhite
, navy
, old lace
, oldlace
, olive
, olive drab
, olivedrab
, orange
, orange red
, orangered
, orchid
, pale goldenrod
, pale green
, pale turquoise
, pale violet red
, palegoldenrod
, palegreen
, paleturquoise
, palevioletred
, papaya whip
, papayawhip
, peach puff
, peachpuff
, peru
, pink
, plum
, powder blue
, powderblue
, purple
, rebecca purple
, rebeccapurple
, red
, rosy brown
, rosybrown
, royal blue
, royalblue
, saddle brown
, saddlebrown
, salmon
, sandy brown
, sandybrown
, sea green
, seagreen
, seashell
, sienna
, silver
, sky blue
, skyblue
, slate blue
, slate gray
, slate grey
, slateblue
, slategray
, slategrey
, snow
, spring green
, springgreen
, steel blue
, steelblue
, tan
, teal
, thistle
, tomato
, transparent
, turquoise
, violet
, wheat
, white
, white smoke
, whitesmoke
, yellow
, yellow green
, and yellowgreen
.
> graphics silhouettes color darkslategray
> graphics silhouettes color navy
> graphics silhouettes color darkslategray
> lighting shadows false
> movie record
> mseries #1-20
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 3 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color sel #2fd51c
> select clear
> graphics silhouettes color black
> lighting soft
> lighting full
> lighting shadows false
> lighting simple
> lighting full
> lighting shadows false
> graphics silhouettes width 1.5
> select clear
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 3 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> graphics silhouettes width 1
> graphics silhouettes width 0.5
> graphics silhouettes width 0.8
> graphics silhouettes width 1
> show #!9 models
> show #!10 models
> hide #!10 models
> show #!8 models
> hide #!9 models
> hide #!8 models
> show #!9 models
> show #!10 models
> hide #!10 models
> hide #!1 models
> show #!10 models
> hide #!10 models
> close #10
> open "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/Built_out_models/Build_Out_08242022/09_frame_J795_Bld_AltB_45percent.pdb"
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/Built_out_models/Build_Out_08242022/09_frame_J795_Bld_AltB_45percent.pdb
---
warnings | Start residue of secondary structure not found: HELIX 19 19 ARG C
13 ARG C 38 1 26
Start residue of secondary structure not found: HELIX 20 20 LYS C 53 ARG C 61
1 9
Start residue of secondary structure not found: HELIX 21 21 LYS C 233 GLU C
236 1 4
Start residue of secondary structure not found: HELIX 22 22 ARG C 265 TRP C
277 1 13
Start residue of secondary structure not found: HELIX 23 23 GLN C 294 LEU C
302 1 9
10 messages similar to the above omitted
Chain information for 09_frame_J795_Bld_AltB_45percent.pdb #10
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
> show #!11 models
> hide #!11 models
> select /R
40589 atoms, 41611 bonds, 25 pseudobonds, 5485 residues, 40 models selected
> color sel #cd5aff
> select /A
53613 atoms, 54684 bonds, 56 pseudobonds, 7057 residues, 40 models selected
> color sel #daa520
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> color sel #ff8c00
> select /B
48812 atoms, 49743 bonds, 9 pseudobonds, 6652 residues, 29 models selected
> color sel #89bdd5
> select /G
6785 atoms, 6905 bonds, 1021 residues, 20 models selected
> color sel #27706a
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color sel #00c85d
> select #1-20
150781 atoms, 153983 bonds, 90 pseudobonds, 20257 residues, 40 models selected
> hise sel
Unknown command: hise sel
> hide sel
> select /N, sel /L
980 atoms, 1040 bonds, 40 residues, 20 models selected
> show sel
> select clear
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 3 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> lighting soft
> select /R
40589 atoms, 41611 bonds, 25 pseudobonds, 5485 residues, 40 models selected
> color sel #cd5aff
> select /A
53613 atoms, 54684 bonds, 56 pseudobonds, 7057 residues, 40 models selected
> color sel #daa520
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> color sel #ff8c00
> select /B
48812 atoms, 49743 bonds, 9 pseudobonds, 6652 residues, 29 models selected
> color sel #89bdd5
> select /G
6785 atoms, 6905 bonds, 1021 residues, 20 models selected
> color sel #27706a
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color sel #00c85d
> dssp
> cartoon style xsection barbell modeHelix default
> select /L
340 atoms, 360 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 340 atom styles
> size sel atomRadius 1.1
Changed 340 atom radii
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> style sel sphere
Changed 640 atom styles
> size sel atomRadius 1.1
Changed 640 atom radii
> lighting soft
> select clear
> mseries #1-20
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> ui tool show "Color Actions"
> color sel lime
> select clear
> mseries #1-20
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color (#!20 & sel) #40a73aff
> color (#!20 & sel) #3aa73eff
> color (#!20 & sel) #3aa74cff
> color (#!20 & sel) #3ba748ff
> color (#!20 & sel) #3ca745ff
> color (#!20 & sel) #4ba73dff
> color (#!20 & sel) #4da73dff
> color (#!20 & sel) #53a739ff
> color (#!20 & sel) #76ef52ff
> color (#!20 & sel) #7bf855ff
> color (#!20 & sel) #7bf955ff
> color (#!20 & sel) #7dfc56ff
> color (#!20 & sel) #7dfd56ff
> color (#!20 & sel) #7cfa55ff
> color (#!20 & sel) #76ee51ff
> color (#!20 & sel) #72e64eff
> color (#!20 & sel) #6ddc4bff
> color (#!20 & sel) #6ddd4bff
> color (#!20 & sel) #6edf4cff
> color (#!20 & sel) #6fe14dff
> color (#!20 & sel) #3fe15fff
> color (#!20 & sel) #36e158ff
> color (#!20 & sel) #35e157ff
> color (#!20 & sel) #31e140ff
> color (#!20 & sel) #5ae131ff
> color (#!20 & sel) #6fe131ff
> color (#!20 & sel) #24e12aff
> color (#!20 & sel) #24e131ff
> color (#!20 & sel) #22e15fff
> color (#!20 & sel) #22e152ff
> color (#!20 & sel) #22e142ff
> color (#!20 & sel) #22e13fff
> color (#!20 & sel) #27e14cff
> color (#!20 & sel) #27e152ff
> color (#!20 & sel) #27e15cff
> color (#!20 & sel) #3ae13aff
> color (#!20 & sel) #3be180ff
> color (#!20 & sel) #29e157ff
> color (#!20 & sel) #15e145ff
> color (#!20 & sel) #15e137ff
> color (#!20 & sel) #13cf33ff
> color (#!20 & sel) #14d334ff
> color (#!20 & sel) #11d32eff
> color (#!20 & sel) #07d318ff
> color (#!20 & sel) #06d317ff
> color (#!20 & sel) #0ed304ff
> color (#!20 & sel) #12d304ff
> color (#!20 & sel) #2ad304ff
> color (#!20 & sel) #30ef05ff
> color (#!20 & sel) #2de204ff
> color (#!20 & sel) #22e214ff
> color (#!20 & sel) #32e21eff
> color (#!20 & sel) #3ae22eff
> color (#!20 & sel) #2de279ff
> color (#!20 & sel) #29e245ff
> color (#!20 & sel) #63e22dff
> color (#!20 & sel) #66e22dff
> color (#!20 & sel) #9de22fff
> color (#!20 & sel) #2fe23bff
> color (#!20 & sel) #2fe26bff
> color (#!20 & sel) #23e22fff
> select clear
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> select /N
640 atoms, 680 bonds, 20 residues, 20 models selected
> color sel #23e22f
> select clear
> mseries #1-20
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 3 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
> lighting full
> lighting shadows false
> lighting simple
> lighting full
> lighting shadows false
> movie record
> mseries #1-20
> mseries #20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2,1
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4"
> framerate 3 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Combined_Build_out.mp4
QAccessibleTable::child: Invalid index at: 1 0
QAccessibleTable::child: Invalid index at: 1 1
QAccessibleTable::child: Invalid index at: 1 2
QAccessibleTable::child: Invalid index at: 1 3
QAccessibleTable::child: Invalid index at: 2 0
QAccessibleTable::child: Invalid index at: 2 1
QAccessibleTable::child: Invalid index at: 2 2
QAccessibleTable::child: Invalid index at: 2 3
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Model_Series2.cxs"
> open "G:/My Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/00_frame_HR_J804.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/01_frame_HR_J803.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/02_frame_HR_J802.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/03_frame_HR_J801.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/04_frame_HR_J800.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/05_frame_HR_J799.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/06_frame_HR_J798.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/07_frame_HR_J797.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/08_frame_HR_J796.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/09_frame_HR_J795.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/10_frame_HR_J794.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/11_frame_HR_J793.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/12_frame_HR_J792.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/13_frame_HR_J791.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/14_frame_HR_J790.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/15_frame_HR_J789.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/16_frame_HR_J788.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/17_frame_HR_J787.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/18_frame_HR_J786.pdb" "G:/My
> Drive/My_Projects/b2AR-Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-
> Cleaned/All_PCData/GTP_All_Pre-
> cleaned/Models/HighRes_models/All/19_frame_HR_J785.pdb"
Summary of feedback from opening G:/My Drive/My_Projects/b2AR-
Gs/Combined_Data/GTP/3DVA/All_GTP_Pre-Cleaned/All_PCData/GTP_All_Pre-
cleaned/Models/HighRes_models/All/03_frame_HR_J801.pdb
---
warning | Start residue of secondary structure not found: HELIX 1 1 GLY R 35
LYS R 60 1 26
Chain information for 00_frame_HR_J804.pdb #21
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 01_frame_HR_J803.pdb #22
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 02_frame_HR_J802.pdb #23
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 03_frame_HR_J801.pdb #24
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 04_frame_HR_J800.pdb #25
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 05_frame_HR_J799.pdb #26
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 06_frame_HR_J798.pdb #27
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 07_frame_HR_J797.pdb #28
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 08_frame_HR_J796.pdb #29
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 09_frame_HR_J795.pdb #30
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 10_frame_HR_J794.pdb #31
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 11_frame_HR_J793.pdb #32
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 12_frame_HR_J792.pdb #33
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 13_frame_HR_J791.pdb #34
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 14_frame_HR_J790.pdb #35
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 15_frame_HR_J789.pdb #36
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 16_frame_HR_J788.pdb #37
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 17_frame_HR_J787.pdb #38
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 18_frame_HR_J786.pdb #39
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
Chain information for 19_frame_HR_J785.pdb #40
---
Chain | Description
A | No description available
B | No description available
G | No description available
R | No description available
> dssp
> hide #!1 models
> select /R
80437 atoms, 82477 bonds, 60 pseudobonds, 10875 residues, 80 models selected
> color sel #cd5aff
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> color sel #daa520
> select /L
680 atoms, 720 bonds, 40 residues, 40 models selected
> color sel #ff8c00
> select /B
97590 atoms, 99451 bonds, 19 pseudobonds, 13302 residues, 59 models selected
> color sel #89bdd5
> select /G
13566 atoms, 13804 bonds, 2042 residues, 40 models selected
> color sel #27706a
> select /N
1280 atoms, 1360 bonds, 40 residues, 40 models selected
> color sel #00c85d
> dssp
> cartoon style xsection barbell modeHelix default
> select /L
680 atoms, 720 bonds, 40 residues, 40 models selected
> style sel sphere
Changed 680 atom styles
> size sel atomRadius 1.1
Changed 680 atom radii
> select /N
1280 atoms, 1360 bonds, 40 residues, 40 models selected
> style sel sphere
Changed 1280 atom styles
> size sel atomRadius 1.1
Changed 1280 atom radii
> lighting soft
> mseries #21-40
[Repeated 1 time(s)]
> select clear
> select /N
1280 atoms, 1360 bonds, 40 residues, 40 models selected
> select /N
1280 atoms, 1360 bonds, 40 residues, 40 models selected
> color sel #23e22f
> select clear
> select #21-40
135340 atoms, 138184 bonds, 108 pseudobonds, 18313 residues, 40 models
selected
> color sel byhetero
> select /N
1280 atoms, 1360 bonds, 40 residues, 40 models selected
> color sel #23e22f
> show #!27 models
> hide #!27 models
> mseries slider #21-40
> select clear
> select #21/A:215
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #21/A:373
11 atoms, 10 bonds, 1 residue, 1 model selected
> select A/215,373
Expected an objects specifier or a keyword
> select /A:215,373
747 atoms, 667 bonds, 80 residues, 40 models selected
> show sel
> select clear
> select #21-40
135340 atoms, 138184 bonds, 108 pseudobonds, 18313 residues, 40 models
selected
> transparency sel 70
> transparency sel 70 atoms
> transparency sel 70 cartoons
> transparency sel 40 cartoons
> select /A:215,373
747 atoms, 667 bonds, 80 residues, 40 models selected
> show sel
> select #21-40
135340 atoms, 138184 bonds, 108 pseudobonds, 18313 residues, 40 models
selected
> transparency sel 0 cartoons
> transparency sel 0 atoms
> select #21/R:228
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /R
80437 atoms, 82477 bonds, 60 pseudobonds, 10875 residues, 80 models selected
> ui tool show "Color Actions"
> color (#!21 & sel) #23e230ff
> color (#!21 & sel) #24e231ff
> color (#!21 & sel) #25e232ff
> color (#!21 & sel) #26e233ff
> color (#!21 & sel) #cd5affff
> color (#!21 & sel) #cb5bffff
> color (#!21 & sel) #cb5cffff
> color (#!21 & sel) #cc5dffff
> color (#!21 & sel) #fdfaffff
> color (#!21 & sel) #efcdffff
> color (#!21 & sel) #fdfaffff
> color (#!21 & sel) #fdf8ffff
> color (#!21 & sel) #e9b9ffff
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> color (#!21 & sel) #daa520ff
> color (#!21 & sel) #dad8d4ff
> color (#!21 & sel) #dac89eff
> color (#!21 & sel) #dad8d2ff
> color (#!21 & sel) #dac38dff
> color (#!21 & sel) #dad8d2ff
> color (#!21 & sel) #dad8d4ff
> color (#!21 & sel) #dac89eff
> select clear
> select /R
80437 atoms, 82477 bonds, 60 pseudobonds, 10875 residues, 80 models selected
> color sel #cd5aff
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> color sel #daa520
> select clear
> color #21 byhetero
> select /N
1280 atoms, 1360 bonds, 40 residues, 40 models selected
> color sel #23e22f
> select clear
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> color (#!28 & sel) byhetero
> color sel byhetero
> select clear
> select ::name="MG"
6 atoms, 6 residues, 6 models selected
> color (#!37 & sel) #a2da8dff
> color (#!37 & sel) #9fda8dff
> color (#!37 & sel) #98da8cff
> color (#!37 & sel) #98da7bff
> color (#!37 & sel) #86da62ff
> color (#!37 & sel) #50da31ff
> color (#!37 & sel) #b9daafff
> color (#!37 & sel) #c8dab0ff
> color (#!37 & sel) #c8da9cff
> color (#!37 & sel) #c7da9aff
> color (#!37 & sel) #9bda79ff
> color (#!37 & sel) #b5da93ff
> color (#!37 & sel) #cdda8aff
> color (#!37 & sel) #a6da76ff
> color (#!37 & sel) #c0da78ff
> color (#!37 & sel) #c3da78ff
> color (#!37 & sel) #be7edaff
> color (#!37 & sel) #90a4daff
> color (#!37 & sel) #91a8daff
> color (#!37 & sel) #dac5bcff
> color (#!37 & sel) #dac6bcff
> color (#!37 & sel) #dad5cfff
> color (#!37 & sel) #dad6d2ff
> color (#!37 & sel) #d4dad2ff
> color (#!37 & sel) #dadadaff
> color (#!37 & sel) #dad6a5ff
> color (#!37 & sel) #c2dab4ff
> select clear
> lighting full
> lighting shadows false
> select #37/A:377
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
148 atoms, 149 bonds, 17 residues, 1 model selected
> transparency sel 70 cartoons
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> transparency sel 70 cartoons
> transparency sel 60 cartoons
> transparency sel 50 cartoons
> select clear
> select #37/A:63
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #37/A:223
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #37/A:225
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #21/A:59
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:59
324 atoms, 284 bonds, 40 residues, 40 models selected
> select clear
> select /A:59
324 atoms, 284 bonds, 40 residues, 40 models selected
> select up
2298 atoms, 2249 bonds, 303 residues, 40 models selected
> transparency sel 0 cartoons
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> transparency sel 65 cartoons
> select /A:59
324 atoms, 284 bonds, 40 residues, 40 models selected
> select up
2298 atoms, 2249 bonds, 303 residues, 40 models selected
> transparency sel 0 cartoons
> select clear
> select #23/A:56
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:56
320 atoms, 280 bonds, 40 residues, 40 models selected
> select up
2575 atoms, 2539 bonds, 341 residues, 40 models selected
> transparency sel 0 cartoons
> select clear
> select /A:371-394
8346 atoms, 8419 bonds, 960 residues, 40 models selected
> transparency sel 0 cartoons
> select /A:56
320 atoms, 280 bonds, 40 residues, 40 models selected
> select up
2575 atoms, 2539 bonds, 341 residues, 40 models selected
> color sel yellow
> select clear
> select #21/A:368
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #21/A:367
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:367
246 atoms, 206 bonds, 40 residues, 40 models selected
> select up
2224 atoms, 2209 bonds, 326 residues, 40 models selected
> color sel purple
> transparency sel 0 cartoons
> select clear
> select #21/A:229
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
70 atoms, 69 bonds, 10 residues, 1 model selected
> select /A:229
200 atoms, 160 bonds, 40 residues, 40 models selected
> select up
2812 atoms, 2784 bonds, 398 residues, 40 models selected
> color sel magenta
> transparency sel 0 cartoons
> select clear
> select add #21/A:213
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add #21/A:218
17 atoms, 15 bonds, 2 residues, 1 model selected
> select add #21/A:215
25 atoms, 22 bonds, 3 residues, 1 model selected
> select up
129 atoms, 132 bonds, 16 residues, 1 model selected
> select #21/A:210
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #21/A:208
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #21/A:209
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #21/A:208
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:208-223
5299 atoms, 5439 bonds, 640 residues, 40 models selected
> color sel blue
> transparency sel 0 cartoons
> select #21/A:265
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #21/A:264
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #21/A:251
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:251-264
3155 atoms, 3131 bonds, 24 pseudobonds, 430 residues, 64 models selected
> transparency sel 0 cartoons
> color sel skyblue
> color sel lightblue
> transparency sel 0 cartoons
> color sel slateblue
> select clear
> select /A:251-264
3155 atoms, 3131 bonds, 24 pseudobonds, 430 residues, 64 models selected
> color list
No custom colors.
248 builtin colors: alice blue
, aliceblue
, antique white
, antiquewhite
, aqua
, aquamarine
, azure
, beige
, bisque
, black
, blanched almond
, blanchedalmond
, blue
, blue violet
, blueviolet
, brown
, burly wood
, burlywood
, cadet blue
, cadetblue
, chartreuse
, chocolate
, coral
, cornflower blue
, cornflowerblue
, cornsilk
, crimson
, cyan
, dark blue
, dark cyan
, dark goldenrod
, dark gray
, dark green
, dark grey
, dark khaki
, dark magenta
, dark olive green
, dark orange
, dark orchid
, dark red
, dark salmon
, dark sea green
, dark seagreen
, dark slate blue
, dark slate gray
, dark slate grey
, dark turquoise
, dark violet
, darkblue
, darkcyan
, darkgoldenrod
, darkgray
, darkgreen
, darkgrey
, darkkhaki
, darkmagenta
, darkolivegreen
, darkorange
, darkorchid
, darkred
, darksalmon
, darkseagreen
, darkslateblue
, darkslategray
, darkslategrey
, darkturquoise
, darkviolet
, deep pink
, deep sky blue
, deep skyblue
, deeppink
, deepskyblue
, dim gray
, dim grey
, dimgray
, dimgrey
, dodger blue
, dodgerblue
, fire brick
, firebrick
, floral white
, floralwhite
, forest green
, forestgreen
, fuchsia
, gainsboro
, ghost white
, ghostwhite
, gold
, goldenrod
, gray
, green
, green yellow
, greenyellow
, grey
, honeydew
, hot pink
, hotpink
, indian red
, indianred
, indigo
, ivory
, khaki
, lavender
, lavender blush
, lavenderblush
, lawn green
, lawngreen
, lemon chiffon
, lemonchiffon
, light blue
, light coral
, light cyan
, light goldenrod yellow
, light gray
, light green
, light grey
, light pink
, light salmon
, light sea green
, light seagreen
, light sky blue
, light skyblue
, light slate gray
, light slate grey
, light steel blue
, light yellow
, lightblue
, lightcoral
, lightcyan
, lightgoldenrodyellow
, lightgray
, lightgreen
, lightgrey
, lightpink
, lightsalmon
, lightseagreen
, lightskyblue
, lightslategray
, lightslategrey
, lightsteelblue
, lightyellow
, lime
, lime green
, limegreen
, linen
, magenta
, maroon
, medium aquamarine
, medium blue
, medium orchid
, medium purple
, medium sea green
, medium seagreen
, medium slate blue
, medium spring green
, medium turquoise
, medium violet red
, mediumaquamarine
, mediumblue
, mediumorchid
, mediumpurple
, mediumseagreen
, mediumslateblue
, mediumspringgreen
, mediumturquoise
, mediumvioletred
, midnight blue
, midnightblue
, mint cream
, mintcream
, misty rose
, mistyrose
, moccasin
, navajo white
, navajowhite
, navy
, old lace
, oldlace
, olive
, olive drab
, olivedrab
, orange
, orange red
, orangered
, orchid
, pale goldenrod
, pale green
, pale turquoise
, pale violet red
, palegoldenrod
, palegreen
, paleturquoise
, palevioletred
, papaya whip
, papayawhip
, peach puff
, peachpuff
, peru
, pink
, plum
, powder blue
, powderblue
, purple
, rebecca purple
, rebeccapurple
, red
, rosy brown
, rosybrown
, royal blue
, royalblue
, saddle brown
, saddlebrown
, salmon
, sandy brown
, sandybrown
, sea green
, seagreen
, seashell
, sienna
, silver
, sky blue
, skyblue
, slate blue
, slate gray
, slate grey
, slateblue
, slategray
, slategrey
, snow
, spring green
, springgreen
, steel blue
, steelblue
, tan
, teal
, thistle
, tomato
, transparent
, turquoise
, violet
, wheat
, white
, white smoke
, whitesmoke
, yellow
, yellow green
, and yellowgreen
.
> color sel firebrick
> select clear
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> color sel byhetero
> select clear
> movie record
> movie stop
> clear
Unknown command: movie clear
> movie encode
Movie encoding failed because no images were recorded.
> movie record
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_Rock.mp4"
> framerate 15 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_Rock.mp4
> turn y 1 20
> turn y 1 -20
Missing or invalid "frames" argument: Must be greater than or equal to 1
> turn y -1 20
[Repeated 1 time(s)]
> turn y 1 20
> movie record
> turn y -1 20
> turn y 1 40
> turn y -1 40
> turn y 1 20
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_Rock.mp4"
> framerate 15 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_Rock.mp4
QAccessibleTable::child: Invalid index at: 2 0
QAccessibleTable::child: Invalid index at: 2 1
QAccessibleTable::child: Invalid index at: 2 2
QAccessibleTable::child: Invalid index at: 2 3
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Model_Series3_Zoom.cxs"
> select /A:215,373
747 atoms, 667 bonds, 80 residues, 40 models selected
> select /A:251-264
3155 atoms, 3131 bonds, 24 pseudobonds, 430 residues, 64 models selected
> select /A:208-223
5299 atoms, 5439 bonds, 640 residues, 40 models selected
> select /A:251-264
3155 atoms, 3131 bonds, 24 pseudobonds, 430 residues, 64 models selected
> select /A:367
246 atoms, 206 bonds, 40 residues, 40 models selected
> select up
2224 atoms, 2209 bonds, 326 residues, 40 models selected
> select /A:229
200 atoms, 160 bonds, 40 residues, 40 models selected
> select up
2812 atoms, 2784 bonds, 398 residues, 40 models selected
> select /A:56
320 atoms, 280 bonds, 40 residues, 40 models selected
> select up
2575 atoms, 2539 bonds, 341 residues, 40 models selected
> select /A:59
324 atoms, 284 bonds, 40 residues, 40 models selected
> select up
2298 atoms, 2249 bonds, 303 residues, 40 models selected
> select /A:251-264
3155 atoms, 3131 bonds, 24 pseudobonds, 430 residues, 64 models selected
> select /B
97590 atoms, 99451 bonds, 19 pseudobonds, 13302 residues, 59 models selected
> transparency sel 65
> transparency sel 65 cartoons
> select /G
13566 atoms, 13804 bonds, 2042 residues, 40 models selected
> transparency sel 65 cartoons
> select /R
80437 atoms, 82477 bonds, 60 pseudobonds, 10875 residues, 80 models selected
> transparency sel 65 cartoons
> select #21/A:50
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:50
232 atoms, 192 bonds, 40 residues, 40 models selected
> select up
1081 atoms, 1041 bonds, 214 residues, 40 models selected
> transparency sel 0 cartoons
> color sel yellow
> select clear
> select #21/A:254
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
51 atoms, 50 bonds, 7 residues, 1 model selected
> select down
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> ~select /A:251-264
89407 atoms, 91144 bonds, 95 pseudobonds, 11835 residues, 80 models selected
> ~select /A:208-223
84108 atoms, 85625 bonds, 95 pseudobonds, 11195 residues, 80 models selected
> select clear
> select #38/A:364
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:365
240 atoms, 200 bonds, 40 residues, 40 models selected
> select up
2224 atoms, 2209 bonds, 326 residues, 40 models selected
> color sel goldenrod
> transparency sel 65 cartoons
> select /A:364-369
1558 atoms, 1518 bonds, 240 residues, 40 models selected
> color sel purple
> transparency sel 0 cartoons
> color sel byhetero
> select clear
> select #35/A:264
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #35/A:251
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #33/A:233
9 atoms, 8 bonds, 1 residue, 1 model selected
> select clear
> select /A:224-233
2792 atoms, 2751 bonds, 1 pseudobond, 397 residues, 41 models selected
> select up
4660 atoms, 4715 bonds, 1 pseudobond, 601 residues, 41 models selected
> ~select /A:224-233
1868 atoms, 1917 bonds, 204 residues, 33 models selected
> color sel goldenrod
> transparency sel 65 cartoons
> select clear
> select #40/A:53
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #40/A:370
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #40/A:394
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> ~select /A:251-264
89407 atoms, 91144 bonds, 95 pseudobonds, 11835 residues, 80 models selected
> ~select /A:208-223
84108 atoms, 85625 bonds, 95 pseudobonds, 11195 residues, 80 models selected
> ~select /A:364-369
82550 atoms, 84027 bonds, 95 pseudobonds, 10955 residues, 80 models selected
> ~select /A:224-233
79758 atoms, 81236 bonds, 94 pseudobonds, 10558 residues, 80 models selected
> ~select /A:53-64
76838 atoms, 78296 bonds, 67 pseudobonds, 10163 residues, 66 models selected
> ~select /A:65-48
76838 atoms, 78296 bonds, 67 pseudobonds, 10163 residues, 66 models selected
> ~select /A:370-394
68224 atoms, 69609 bonds, 67 pseudobonds, 9163 residues, 66 models selected
> select color goldenrod
Expected an objects specifier or a keyword
> color sel goldenrod
> transparency sel 65 cartoons
> select /A:48-65
4001 atoms, 3968 bonds, 608 residues, 40 models selected
> color sel yellow
> transparency sel 0 cartoons
> select #40/A:262
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> ~select /A:251-264
89407 atoms, 91144 bonds, 95 pseudobonds, 11835 residues, 80 models selected
> ~select /A:208-223
84108 atoms, 85625 bonds, 95 pseudobonds, 11195 residues, 80 models selected
> ~select /A:364-369
82550 atoms, 84027 bonds, 95 pseudobonds, 10955 residues, 80 models selected
> ~select /A:224-233
79758 atoms, 81236 bonds, 94 pseudobonds, 10558 residues, 80 models selected
> ~select /A:53-64
76838 atoms, 78296 bonds, 67 pseudobonds, 10163 residues, 66 models selected
> ~select /A:48-65
75757 atoms, 77217 bonds, 65 pseudobonds, 9950 residues, 65 models selected
> ~select /A:370-394
67143 atoms, 68530 bonds, 65 pseudobonds, 8950 residues, 65 models selected
> transparency sel 55 cartoons
> transparency sel 75 cartoons
> select clear
> select /A
92562 atoms, 94355 bonds, 119 pseudobonds, 12265 residues, 80 models selected
> ~select /A:251-264
89407 atoms, 91144 bonds, 95 pseudobonds, 11835 residues, 80 models selected
> ~select /A:208-223
84108 atoms, 85625 bonds, 95 pseudobonds, 11195 residues, 80 models selected
> ~select /A:364-369
82550 atoms, 84027 bonds, 95 pseudobonds, 10955 residues, 80 models selected
> ~select /A:224-233
79758 atoms, 81236 bonds, 94 pseudobonds, 10558 residues, 80 models selected
> ~select /A:53-64
76838 atoms, 78296 bonds, 67 pseudobonds, 10163 residues, 66 models selected
> ~select /A:48-65
75757 atoms, 77217 bonds, 65 pseudobonds, 9950 residues, 65 models selected
> ~select /A:370-394
67143 atoms, 68530 bonds, 65 pseudobonds, 8950 residues, 65 models selected
> color sel byhetero
> select clear
> select #40/R:139
11 atoms, 11 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> select #40/R:139
11 atoms, 11 bonds, 1 residue, 1 model selected
> select /R:139
434 atoms, 433 bonds, 40 residues, 40 models selected
> show sel
> select clear
> select #28/A:223
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #28/A:223
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
70 atoms, 72 bonds, 8 residues, 1 model selected
> color sel blue
> transparency sel 0 cartoons
> select clear
> select /A:208-223
5299 atoms, 5439 bonds, 640 residues, 40 models selected
> color sel blue
> transparency sel 0 cartoons
> select clear
> select /A:208-223
5299 atoms, 5439 bonds, 640 residues, 40 models selected
> color sel byhetero
> select clear
> select /A:251-264,208-223,364-369,224-233,53-64,48-65,370-394
25419 atoms, 25574 bonds, 25 pseudobonds, 3315 residues, 64 models selected
> color sel byhetero
> select clear
[Repeated 1 time(s)]
> movie record
> turn y -1 20
> turn y 1 40
> turn y -1 40
> turn y 1 20
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_Rock.mp4"
> framerate 15 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_Rock.mp4
> movie record
> turn y -1 20
> turn y 1 40
> turn y -1 40
> turn y 1 20
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_Rock.mp4"
> framerate 15 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_Rock.mp4
> movie record
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom.mp4" framerate 15
> quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom.mp4
> movie record
[Repeated 1 time(s)]Already recording a movie
> mseries #20-41
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom.mp4" framerate 15
> quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom.mp4
> show #!21 models
> hide #!40 models
> movie record
> mseries #21-40
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom.mp4" framerate 15
> quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom.mp4
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Model_Series4_Zoom.cxs"
——— End of log from Sat Sep 10 06:05:29 2022 ———
opened ChimeraX session
> select /A:88-202
20637 atoms, 21032 bonds, 24 pseudobonds, 2746 residues, 37 models selected
> select /A:208-223
5299 atoms, 5439 bonds, 640 residues, 40 models selected
> color sel cyan
> mseries slider #21-40
> close #1-20
> color sel byhetero
> select clear
[Repeated 1 time(s)]
> select #22/A:376
11 atoms, 11 bonds, 1 residue, 1 model selected
> show sel atoms
> select /A:376
214 atoms, 213 bonds, 20 residues, 20 models selected
> show sel & #!21 atoms
> sehow sel
Unknown command: sehow sel
> show sel
> select clear
> show #!40 models
> hide #!38 models
> show #!21 models
> hide #!21 models
> show #!22 models
> show #!21 models
> hide #!22 models
> hide #!21 models
> show #!21 models
> hide #!21 models
> select #40/A:245
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
51 atoms, 51 bonds, 7 residues, 1 model selected
> show sel atoms
> hide sel atoms
> select clear
> select #28/A:224
7 atoms, 6 bonds, 1 residue, 1 model selected
> color sel goldenrod
> transparency sel 70
> transparency sel 70 target m
> transparency sel 70 target c
> select clear
> windowsize
window size 864 743
> pixelsize
Unknown command: pixelsize
> pixel
Unknown command: pixel
> size
> pixelSize
Unknown command: pixelSize
> zom
Unknown command: zom
> zoom
Pixel size at center of rotation is 0.0671
> windowsize
window size 864 743
> zoom
Pixel size at center of rotation is 0.0671
> select #33/A:215@CA
1 atom, 1 residue, 1 model selected
> select clear
> show #!22 models
> hide #!22 models
> show #!23 models
> hide #!23 models
> show #!24 models
> hide #!24 models
> show #!25 models
> hide #!25 models
> show #!26 models
> hide #!26 models
> show #!27 models
> hide #!27 models
> show #!28 models
> hide #!28 models
> show #!29 models
> hide #!29 models
> show #!30 models
> hide #!30 models
> show #!31 models
> hide #!31 models
> show #!31 models
> hide #!31 models
> show #!31 models
> hide #!31 models
> show #!31 models
> hide #!31 models
> show #!31 models
> hide #!31 models
> movie record
> turn y -1 20
> turn y 1 40
> turn y -1 40
> turn y 1 40
> turn y -1 20
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_Rock_2.mp4"
> framerate 15 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_Rock_2.mp4
> movie record
> mseries #21-40
> movie encode "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_rate2.mp4"
> framerate 2 quality highest
Movie saved to G:/My Drive/My_Projects/b2AR-
Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Zoom_rate2.mp4
> show #!21 models
> hide #!21 models
> windowsize
window size 864 743
> zoom
Pixel size at center of rotation is 0.0667
> windowsize
window size 864 743
> zoom
Pixel size at center of rotation is 0.0668
> show #!21 models
> hide #!32 models
> show #!22 models
> hide #!22 models
> show #!29 models
> hide #!29 models
> show #!30 models
> hide #!30 models
> show #!31 models
> hide #!31 models
> show #!31 models
> hide #!31 models
> show #!32 models
> hide #!32 models
> show #!33 models
> hide #!21 models
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Model_Series5_Zoom.cxs"
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/frame12.png" width 864
> height 743 supersample 3 transparentBackground true
> hide #!33 models
> show #!34 models
> show #!33 models
> hide #!34 models
> show #!35 models
> hide #!35 models
> show #!35 models
> hide #!35 models
> show #!35 models
> show #!21 models
> hide #!21 models
> show #!36 models
> hide #!35 models
> hide #!33 models
> show #!35 models
> hide #!35 models
> hide #!36 models
> show #!37 models
> show #!36 models
> hide #!36 models
> show #!36 models
> hide #!37 models
> show #!34 models
> hide #!36 models
> show #!35 models
> hide #!34 models
> show #!36 models
> hide #!35 models
QAccessibleTable::child: Invalid index at: 1 0
QAccessibleTable::child: Invalid index at: 1 1
QAccessibleTable::child: Invalid index at: 1 2
QAccessibleTable::child: Invalid index at: 1 3
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/frame15.png" width 864
> height 743 supersample 3 transparentBackground true
> hide #!36 models
> show #!36 models
> show #!37 models
> hide #!37 models
> show #!38 models
> hide #!36 models
> show #!37 models
> hide #!37 models
> show #!34 models
> hide #!34 models
> show #!30 models
> hide #!30 models
> show #!32 models
> hide #!32 models
> show #!34 models
> hide #!34 models
> show #!33 models
> hide #!33 models
> show #!37 models
> select #38/X:0@MG
1 atom, 1 residue, 1 model selected
> select #37/X:0@MG
1 atom, 1 residue, 1 model selected
> ui tool show "Selection Inspector"
> select #38/X:0@MG
1 atom, 1 residue, 1 model selected
> color sel #c2dab4 atoms
> select clear
> hide #!37 models
> show #!37 models
> hide #!37 models
> show #!37 models
> hide #!37 models
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/frame17.png" width 864
> height 743 supersample 3 transparentBackground true
> show #!40 models
> show #!39 models
> hide #!38 models
> hide #!39 models
> show #!39 models
> hide #!39 models
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/frame19.png" width 864
> height 743 supersample 3 transparentBackground true
> show #!37 models
> hide #!40 models
> show #!38 models
> hide #!38 models
> show #!38 models
> hide #!38 models
> show #!22 models
> hide #!22 models
> hide #!21 models
> show #!21 models
> show #!22 models
> hide #!22 models
> show #!23 models
> hide #!23 models
> show #!24 models
> hide #!24 models
> show #!25 models
> hide #!25 models
> show #!26 models
> hide #!26 models
> show #!28 models
> hide #!28 models
> show #!28 models
> hide #!28 models
> show #!29 models
> hide #!29 models
> show #!22 models
> hide #!22 models
> hide #!21 models
> show #!21 models
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Presentations/09072022_Purple/Combined/3DVA/Models/Model_Series6_Zoom.cxs"
——— End of log from Mon Sep 12 08:05:39 2022 ———
opened ChimeraX session
> select #21
6676 atoms, 6822 bonds, 4 pseudobonds, 894 residues, 2 models selected
> transparency sel 0 target a
> transparency sel 0 target m
> transparency sel 0 target r
> select clear
> show #21-40 target m
> select #21-40
135340 atoms, 138184 bonds, 108 pseudobonds, 18313 residues, 40 models
selected
> transparency sel 0 target r
> transparency sel 0 target a
> select #21
6676 atoms, 6822 bonds, 4 pseudobonds, 894 residues, 2 models selected
> ui tool show "Color Actions"
> color sel dark orange
> select #21
6676 atoms, 6822 bonds, 4 pseudobonds, 894 residues, 2 models selected
> color sel #ffb300
> select #21
6676 atoms, 6822 bonds, 4 pseudobonds, 894 residues, 2 models selected
> color sel #ffb300
> select #22
6752 atoms, 6900 bonds, 3 pseudobonds, 902 residues, 2 models selected
> color sel #f59c1d
> select #23
6738 atoms, 6887 bonds, 4 pseudobonds, 898 residues, 2 models selected
> color sel #ef8d2f
> select #24
6664 atoms, 6809 bonds, 5 pseudobonds, 893 residues, 2 models selected
> color sel #ea823d
> select #25
6745 atoms, 6889 bonds, 5 pseudobonds, 893 residues, 2 models selected
> color sel #e5774a
> select #26
6744 atoms, 6889 bonds, 4 pseudobonds, 899 residues, 2 models selected
> color sel #e16e55
> select #27
6751 atoms, 6896 bonds, 4 pseudobonds, 900 residues, 2 models selected
> color sel #dc6264
> select #28
6786 atoms, 6931 bonds, 5 pseudobonds, 898 residues, 2 models selected
> color sel #d75871
> select #29
6750 atoms, 6895 bonds, 5 pseudobonds, 896 residues, 2 models selected
> color sel #d34f7c
> select #30
6763 atoms, 6909 bonds, 4 pseudobonds, 898 residues, 2 models selected
> color sel #cd428d
> select #31
6792 atoms, 6941 bonds, 3 pseudobonds, 906 residues, 2 models selected
> color sel #cd428e
> select #32
6729 atoms, 6875 bonds, 3 pseudobonds, 906 residues, 2 models selected
> color sel #ca3c95
> select #33
6653 atoms, 6797 bonds, 4 pseudobonds, 899 residues, 2 models selected
> color sel #c7349f
> select #34
6636 atoms, 6777 bonds, 4 pseudobonds, 902 residues, 2 models selected
> color sel #c52fa6
> select #35
7099 atoms, 7239 bonds, 7 pseudobonds, 972 residues, 2 models selected
> color sel #c32aad
> select #36
6915 atoms, 7052 bonds, 7 pseudobonds, 955 residues, 2 models selected
> color sel #c023b5
> select #37
6883 atoms, 7018 bonds, 7 pseudobonds, 951 residues, 2 models selected
> color sel #bc1ac1
> select #38
6577 atoms, 6707 bonds, 8 pseudobonds, 920 residues, 2 models selected
> color sel #b912ca
> select #39
7009 atoms, 7149 bonds, 9 pseudobonds, 980 residues, 2 models selected
> color sel #b60ad3
> select #40
6678 atoms, 6802 bonds, 13 pseudobonds, 951 residues, 2 models selected
> color sel #b100e0
> select clear
> hide #!22 models
> hide #!23 models
> hide #!24 models
> hide #!26 models
> hide #!27 models
> hide #!28 models
> show #!28 models
> hide #!28 models
> hide #!30 models
> hide #!31 models
> hide #!32 models
> hide #!34 models
> hide #!35 models
> hide #!36 models
> hide #!38 models
> hide #!39 models
> hide #!37 models
> show #!36 models
> hide #!33 models
> show #!31 models
> hide #!29 models
> show #!26 models
> hide #!25 models
> select clear
> select #21
6676 atoms, 6822 bonds, 4 pseudobonds, 894 residues, 2 models selected
> select add #40
13354 atoms, 13624 bonds, 17 pseudobonds, 1845 residues, 4 models selected
> select #22-39
121986 atoms, 124560 bonds, 91 pseudobonds, 16468 residues, 36 models selected
> transparency sel 60 target r
> select clear
> show #!22 models
> show #!23 models
> show #!24 models
> select #22-39
121986 atoms, 124560 bonds, 91 pseudobonds, 16468 residues, 36 models selected
> show sel target r
> select clear
> show #!25 models
> show #!27 models
> show #!28 models
> show #!29 models
> show #!30 models
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> show #!37 models
> show #!38 models
> show #!39 models
> hide #!22 models
> hide #!23 models
> hide #!25 models
> hide #!24 models
> hide #!27 models
> hide #!29 models
> hide #!28 models
> hide #!30 models
> hide #!32 models
> hide #!33 models
> hide #!34 models
> hide #!35 models
> hide #!37 models
> hide #!38 models
> hide #!39 models
> show #!25 models
> hide #!26 models
> show #!30 models
> hide #!31 models
> show #!35 models
> hide #!36 models
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Manuscripts/01_GTP_Dissociation/Figures/Figure_2/Gradient_Whole_Model.cxs"
QAccessibleTable::child: Invalid index at: 1 0
QAccessibleTable::child: Invalid index at: 1 1
QAccessibleTable::child: Invalid index at: 1 2
QAccessibleTable::child: Invalid index at: 1 3
QAccessibleTable::child: Invalid index at: 2 0
QAccessibleTable::child: Invalid index at: 2 1
QAccessibleTable::child: Invalid index at: 2 2
QAccessibleTable::child: Invalid index at: 2 3
> save "G:/My Drive/My_Projects/b2AR-
> Gs/Manuscripts/01_GTP_Dissociation/Figures/Figure_2/Gradient_Whole_Model.png"
> width 502 height 721 supersample 3 transparentBackground true
===== Log before crash end =====
OpenGL version: 3.3.14761 Core Profile Forward-Compatible Context 21.30.14 30.0.13014.8
OpenGL renderer: AMD Radeon(TM) Graphics
OpenGL vendor: ATI Technologies Inc.
Locale: en_US.cp1252
Qt version: PyQt6 6.2.3, Qt 6.2.3
Qt platform: windows
Manufacturer: Dell Inc.
Model: Inspiron 7415 2-in-1
OS: Microsoft Windows 11 Home (Build 22000)
Memory: 16,483,872,768
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 5700U with Radeon Graphics
OSLanguage: en-US
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.36.2
ChimeraX-AtomicLibrary: 6.1.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.1
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4.dev202203170703
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.3
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.8
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBImages: 1.1
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-Phenix: 0.3
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.9
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.1
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.5.1
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.30.0
funcparserlib: 1.0.0a0
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.9.2
kiwisolver: 1.4.0
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
MolecularDynamicsViewer: 1.4
msgpack: 1.0.3
nest-asyncio: 1.5.4
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.28
psutil: 5.9.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.7
PyQt6-commercial: 6.2.3
PyQt6-sip: 13.2.0
PyQt6-WebEngine-commercial: 6.2.1
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 303
pyzmq: 22.3.0
qtconsole: 5.2.2
QtPy: 2.0.1
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (1)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Description: | modified (diff) |
| Platform: | → all |
| Project: | → ChimeraX |
| Resolution: | → can't reproduce |
| Status: | new → closed |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
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1.4, but before going to Python 3..9.11