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Opened 3 years ago
Last modified 3 years ago
#7621 feedback defect
Crash in event loop
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-12.6-arm64-arm-64bit
ChimeraX Version: 1.5.dev202209180803 (2022-09-18 08:03:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x000000028a073000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000289067000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000028805b000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000028704f000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000286043000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000285037000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000028402b000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000028301f000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000282013000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000281007000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000017fd0b000 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x000000010031c580 (most recent call first):
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 881 in init
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1032 in
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2022-09-19 13:35:45.00 +0800","app_version":"1.5.0","slice_uuid":"a5992708-d5b4-36ec-ac0a-e525f6105b56","build_version":"1.5.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.6 (21G115)","incident_id":"62927451-A5D9-4687-BCED-525241D4B89F","name":"ChimeraX"}
{
"uptime" : 5500,
"procLaunch" : "2022-09-19 13:34:38.8224 +0800",
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac14,7",
"procStartAbsTime" : 132893978242,
"coalitionID" : 2903,
"osVersion" : {
"train" : "macOS 12.6",
"build" : "21G115",
"releaseType" : "User"
},
"captureTime" : "2022-09-19 13:35:38.4018 +0800",
"incident" : "62927451-A5D9-4687-BCED-525241D4B89F",
"bug_type" : "309",
"pid" : 10303,
"procExitAbsTime" : 134323405914,
"translated" : false,
"cpuType" : "ARM-64",
"procName" : "ChimeraX",
"procPath" : "\/private\/var\/folders\/*\/ChimeraX_techpreview.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.5.0","CFBundleVersion":"1.5.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"3897993C-E526-5C4D-B94B-9699391E79D5","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "AB28EFDE-2A8E-E4EC-B247-610ACEC910F8",
"wakeTime" : 130,
"sleepWakeUUID" : "14AFFF11-EC7C-4EAB-8B95-C9F7E0BE169E",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"ktriageinfo" : "VM - pmap_enter failed with resource shortage\nVM - pmap_enter failed with resource shortage\n",
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.5.dev202209180803 (2022-09-18)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5.dev202209180803 (2022-09-18)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M2
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.1
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,7
Chip: Apple M2
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 7459.141.1
OS Loader Version: 7459.141.1
Software:
System Software Overview:
System Version: macOS 12.6 (21G115)
Kernel Version: Darwin 21.6.0
Time since boot: 3:41
Graphics/Displays:
Apple M2:
Chipset Model: Apple M2
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Installed Packages:
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blockdiag: 3.0.0
build: 0.8.0
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charset-normalizer: 2.1.1
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ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0
ChimeraX-CheckWaters: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.2
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5.dev202209180803
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.7
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.7
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.1
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.3
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.0.0
filelock: 3.7.1
fonttools: 4.37.2
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 4.12.0
ipykernel: 6.15.1
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 4.11.1
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.5
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.3
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
prompt-toolkit: 3.0.31
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.1
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.1
python-dateutil: 2.8.2
pytz: 2022.2.1
pyzmq: 24.0.0
qtconsole: 5.3.1
QtPy: 2.2.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.5.0
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
urllib3: 1.26.12
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.8.1
Change History (3)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in event loop |
comment:2 by , 3 years ago
| Status: | accepted → feedback |
|---|
comment:3 by , 3 years ago
I'm wondering if ChimeraX has ever worked on your MacBook Pro machine -- I see it has an Apple M2 processor and is running macOS 12.6 which came out just a week ago. We don't have an M2 Mac to test on, only M1 Macs. Thanks for trying the native Mac ARM techpreview ChimeraX -- we do expecting it to work on M2 Mac machines like yours.
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Hi,
--Eric