Abort during Qt initialization

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
{"app_name":"ChimeraX","timestamp":"2022-09-15 17:28:46.00 +1000","app_version":"1.4.0","slice_uuid":"9596eff5-d2be-396c-9c4e-6177235c3dae","build_version":"1.4.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.4 (21F2081)","incident_id":"456FCBDA-AA08-46FC-89AA-5E5A7CFBE78C","name":"ChimeraX"}
{
  "uptime" : 64000,
  "procLaunch" : "2022-09-15 17:27:25.9390 +1000",
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "Mac14,2",
  "procStartAbsTime" : 1539384112055,
  "coalitionID" : 4545,
  "osVersion" : {
    "train" : "macOS 12.4",
    "build" : "21F2081",
    "releaseType" : "User"
  },
  "captureTime" : "2022-09-15 17:28:33.8539 +1000",
  "incident" : "456FCBDA-AA08-46FC-89AA-5E5A7CFBE78C",
  "bug_type" : "309",
  "pid" : 71438,
  "procExitAbsTime" : 1541013822704,
  "translated" : true,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.4.0","CFBundleVersion":"1.4.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"9A02015A-F505-5B70-BACF-A417C2C88C83","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "ED82E4CB-FF84-8C09-DDEE-97C918092E9C",
  "wakeTime" : 743,
  "sleepWakeUUID" : "0CB70E73-42E7-432C-9B4B-012B97EA9EAC",
  "sip" : "enabled",
  "isCorpse" : 1,
  "exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
  "asi" : {"libsystem_c.dylib":["abort() called"]},
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
  "threads" : [{"triggered":true,"id":691226,"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":6103474212607825538},"r12":{"value":259},"rosetta":{"tmp2":{"value":140703457619972},"tmp1":{"value":140705878518036},"tmp0":{"value":18446744073709551615}},"rbx":{"value":8676492800,"symbolLocation":0,"symbol":"_main_thread"},"r8":{"value":6},"r15":{"value":22},"r10":{"value":8676492800,"symbolLocation":0,"symbol":"_main_thread"},"rdx":{"value":0},"rdi":{"value":6103474212607825538},"r9":{"value":6103474212607825538},"r13":{"value":105553168177688},"rflags":{"value":643},"rax":{"value":0},"rsp":{"value":4518989960},"r11":{"value":140704555811536,"symbolLocation":448,"symbol":"__sFX"},"rcx":{"value":0},"r14":{"value":6},"rsi":{"value":4518989960}},"queue":"com.apple.main-thread","frames":[{"imageOffset":140705878518080,"imageIndex":0},{"imageOffset":32782,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":1},{"imageOffset":25087,"symbol":"pthread_kill","symbolLocation":263,"imageIndex":2},{"imageOffset":279256,"symbol":"raise","symbolLocation":26,"imageIndex":3},{"imageOffset":15869,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":4},{"imageOffset":0,"imageIndex":0},{"imageOffset":531748,"symbol":"abort","symbolLocation":123,"imageIndex":3},{"imageOffset":28361,"symbol":"qAbort()","symbolLocation":9,"imageIndex":5},{"imageOffset":44153,"imageIndex":5},{"imageOffset":3637847,"symbol":"QMessageLogger::fatal(char const*, ...) const","symbolLocation":213,"imageIndex":5},{"imageOffset":600030,"symbol":"QGuiApplicationPrivate::createPlatformIntegration()","symbolLocation":7134,"imageIndex":6},{"imageOffset":600075,"symbol":"QGuiApplicationPrivate::createEventDispatcher()","symbolLocation":27,"imageIndex":6},{"imageOffset":438666,"symbol":"QCoreApplicationPrivate::init()","symbolLocation":1930,"imageIndex":5},{"imageOffset":578937,"symbol":"QGuiApplicationPrivate::init()","symbolLocation":57,"imageIndex":6},{"imageOffset":34930,"symbol":"QApplicationPrivate::init()","symbolLocation":34,"imageIndex":7},{"imageOffset":1301992,"symbol":"init_type_QApplication(_sipSimpleWrapper*, _object*, _object*, _object**, _object**, _object**)","symbolLocation":168,"imageIndex":8},{"imageOffset":32037,"symbol":"sipSimpleWrapper_init","symbolLocation":197,"imageIndex":9},{"imageOffset":629708,"symbol":"wrap_init","symbolLocation":12,"imageIndex":10},{"imageOffset":293561,"symbol":"wrapperdescr_call","symbolLocation":121,"imageIndex":10},{"imageOffset":259511,"symbol":"_PyObject_MakeTpCall","symbolLocation":359,"imageIndex":10},{"imageOffset":1146524,"symbol":"call_function","symbolLocation":876,"imageIndex":10},{"imageOffset":1135266,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25554,"imageIndex":10},{"imageOffset":261416,"symbol":"function_code_fastcall","symbolLocation":104,"imageIndex":10},{"imageOffset":259093,"symbol":"_PyObject_FastCallDictTstate","symbolLocation":293,"imageIndex":10},{"imageOffset":262040,"symbol":"_PyObject_Call_Prepend","symbolLocation":152,"imageIndex":10},{"imageOffset":629509,"symbol":"slot_tp_init","symbolLocation":165,"imageIndex":10},{"imageOffset":610233,"symbol":"type_call","symbolLocation":345,"imageIndex":10},{"imageOffset":259511,"symbol":"_PyObject_MakeTpCall","symbolLocation":359,"imageIndex":10},{"imageOffset":1146524,"symbol":"call_function","symbolLocation":876,"imageIndex":10},{"imageOffset":1135266,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25554,"imageIndex":10},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":10},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":10},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":10},{"imageOffset":1135435,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25723,"imageIndex":10},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":10},{"imageOffset":1109419,"symbol":"PyEval_EvalCode","symbolLocation":139,"imageIndex":10},{"imageOffset":1096722,"symbol":"builtin_exec","symbolLocation":626,"imageIndex":10},{"imageOffset":516131,"symbol":"cfunction_vectorcall_FASTCALL","symbolLocation":195,"imageIndex":10},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":10},{"imageOffset":1135435,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25723,"imageIndex":10},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":10},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":10},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":10},{"imageOffset":1135435,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25723,"imageIndex":10},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":10},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":10},{"imageOffset":1566832,"symbol":"pymain_run_module","symbolLocation":208,"imageIndex":10},{"imageOffset":1564551,"symbol":"Py_RunMain","symbolLocation":1431,"imageIndex":10},{"imageOffset":1566095,"symbol":"pymain_main","symbolLocation":223,"imageIndex":10},{"imageOffset":1565851,"symbol":"Py_Main","symbolLocation":43,"imageIndex":10},{"imageOffset":3528,"symbol":"main","symbolLocation":120,"imageIndex":11},{"imageOffset":21790,"symbol":"start","symbolLocation":462,"imageIndex":12}]},{"id":691404,"name":"com.apple.rosetta.exceptionserver","frames":[{"imageOffset":18884,"imageIndex":13},{"imageOffset":74848,"imageIndex":13},{"imageOffset":81624,"imageIndex":13}]},{"id":691557,"frames":[{"imageOffset":140705878518080,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":14},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":691558,"frames":[{"imageOffset":140705878518080,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":14},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":691559,"frames":[{"imageOffset":140705878518080,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":14},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":691560,"frames":[{"imageOffset":140705878518080,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":14},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":691561,"frames":[{"imageOffset":140705878518080,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":14},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":691562,"frames":[{"imageOffset":140705878518080,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":14},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":691563,"frames":[{"imageOffset":140705878518080,"imageIndex":0},{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":1},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":2},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":14},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":2},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":2}]},{"id":691761,"frames":[{"imageOffset":141332,"imageIndex":13}]}],
  "usedImages" : [
  {
    "size" : 0,
    "source" : "A",
    "base" : 0,
    "uuid" : "00000000-0000-0000-0000-000000000000"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703457587200,
    "size" : 229376,
    "uuid" : "cb093f93-d621-3b01-be31-19e24b93233d",
    "path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
    "name" : "libsystem_kernel.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703457816576,
    "size" : 49152,
    "uuid" : "a0a4bbc4-8410-35d1-8921-70d455efafb3",
    "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    "name" : "libsystem_pthread.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703456571392,
    "size" : 561152,
    "uuid" : "93b896dd-d7ac-3d8a-bd72-285acb2feb7f",
    "path" : "\/usr\/lib\/system\/libsystem_c.dylib",
    "name" : "libsystem_c.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703457914880,
    "size" : 40960,
    "uuid" : "f7a9806c-58ce-3ff1-a7c4-d5d99c8316a3",
    "path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
    "name" : "libsystem_platform.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4952027136,
    "size" : 5226496,
    "uuid" : "97d356c9-7652-3ff7-be10-198e30670243",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
    "name" : "QtCore"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 5037404160,
    "size" : 6815744,
    "uuid" : "1d3e67c7-22f9-33ac-a03a-446da81fdc43",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
    "name" : "QtGui"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 5022093312,
    "size" : 4997120,
    "uuid" : "4969d1ff-28d9-3632-9358-784c5dec38c8",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
    "name" : "QtWidgets"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 5008310272,
    "size" : 2818048,
    "uuid" : "0a164d84-8b44-3f10-9065-1d0486c25a4b",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWidgets.abi3.so",
    "name" : "QtWidgets.abi3.so"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4599263232,
    "size" : 98304,
    "uuid" : "34b1db54-21e7-38de-825b-bf145e2aae42",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/sip.cpython-39-darwin.so",
    "name" : "sip.cpython-39-darwin.so"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4522385408,
    "size" : 2527232,
    "uuid" : "ef9cc1f4-5991-3213-9a9e-e68c578b6c1b",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python",
    "name" : "Python"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4377853952,
    "size" : 4096,
    "uuid" : "9596eff5-d2be-396c-9c4e-6177235c3dae",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
    "name" : "ChimeraX"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 8675966976,
    "size" : 442368,
    "uuid" : "84ab8218-af1e-3c1a-864b-527a79e38362",
    "path" : "\/usr\/lib\/dyld",
    "name" : "dyld"
  },
  {
    "source" : "P",
    "arch" : "arm64",
    "base" : 140703126392832,
    "size" : 196608,
    "uuid" : "0ed8985d-88b6-3901-be7c-19b93888c3bc",
    "path" : "\/usr\/libexec\/rosetta\/runtime",
    "name" : "runtime"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4615397376,
    "size" : 63488000,
    "uuid" : "10431d8f-5e3b-3bbc-abd5-81f6a73a5269",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
    "name" : "libopenblas64_.0.dylib"
  }
],
  "sharedCache" : {
  "base" : 140703454560256,
  "size" : 19328679936,
  "uuid" : "d066fe42-6363-3d89-b401-fd5290fa3658"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)\nWritable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nActivity Tracing                   256K        1 \nKernel Alloc Once                    8K        1 \nMALLOC                           190.1M       22 \nMALLOC guard page                   96K        4 \nMALLOC_MEDIUM (reserved)         232.0M        2         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)\nRosetta Arena                     4096K        2 \nRosetta Generic                   1040K      257 \nRosetta IndirectBranch             384K        2 \nRosetta JIT                      128.0M        1 \nRosetta Return Stack               200K       20 \nRosetta Thread Context             200K       20 \nSTACK GUARD                          4K        1 \nStack                             12.1M        9 \nStack Guard                       56.0M        8 \nVM_ALLOCATE                      107.3M       57 \nVM_ALLOCATE (reserved)           160.0M        5         reserved VM address space (unallocated)\n__DATA                            18.5M      305 \n__DATA_CONST                      11.0M      150 \n__DATA_DIRTY                       485K       85 \n__FONT_DATA                          4K        1 \n__LINKEDIT                       722.8M       62 \n__OBJC_RO                         82.7M        1 \n__OBJC_RW                         3200K        2 \n__TEXT                           283.0M      313 \n__UNICODE                          592K        1 \ndyld private memory               1088K        3 \nmapped file                        5.5G      477 \nshared memory                       64K        4 \nunshared pmap                     2880K        2 \n===========                     =======  ======= \nTOTAL                              7.8G     1819 \nTOTAL, minus reserved VM space     7.1G     1819 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "607844aa04477260f58a8077",
      "factorPackIds" : {
        "SIRI_MORPHUN_ASSETS" : "6103050cbfe6dc472e1c982a"
      },
      "deploymentId" : 240000066
    },
    {
      "rolloutId" : "5ffde50ce2aacd000d47a95f",
      "factorPackIds" : {

      },
      "deploymentId" : 240000198
    }
  ],
  "experiments" : [

  ]
}
}


Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M2
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac
      Model Identifier: Mac14,2
      Processor Name: Unknown
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache: 8 MB
      Memory: 8 GB

Software:

    System Software Overview:

      System Version: macOS 12.4 (21F2081)
      Kernel Version: Darwin 21.5.0
      Time since boot: 2 days 23:38

Graphics/Displays:

    Apple M2:

      Chipset Model: Apple M2
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina Display
          Resolution: 2560 x 1664 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.0
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

[pett]

This happens so early that I'm wondering if we actually expect to get the QMessageLogger message in the latest version of ChimeraX?

[Tom Goddard]

It appears this crash (on Mac M2 processor!) is in the QApplication.init() call from our UI class (in ui/gui.py) just a few lines before self.redirect_qt_messages() which would attempt to log the Qt fatal error message. It looks like qInstallMessageHandler() can be called before the QApplication is created (​https://doc.qt.io/qt-6/qtglobal.html#qInstallMessageHandler). But our logging code will write it to stderr and it will be lost because the logging file is not setup until our bug_reporter bundle is initiialized which is after UI is created. So we would need to set up a log file to receive such an early fatal error message in order to capture the message and report it in the crash report.