Changes between Initial Version and Version 1 of Ticket #7486


Ignore:
Timestamp:
Aug 22, 2022, 11:21:21 AM (3 years ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
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  • Ticket #7486

    • Property Component Unassigned → Documentation
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Crash computing ribbons

  • Ticket #7486 – Description

    initial v1  
    3434  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
    3535  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
     36Windows fatal exception: code 0x800706ba
     37
     38Thread 0x000106c4 (most recent call first):
     39  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
     40  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
     41  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
     42  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
     43  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
     44Windows fatal exception: code 0x800706ba
     45
     46Thread 0x000106c4 (most recent call first):
     47  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
     48  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
     49  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
     50  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
     51  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
     52Windows fatal exception: code 0x800706ba
     53
     54Thread 0x000106c4 (most recent call first):
     55  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
     56  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
     57  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
     58  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
     59  File "D:\ProgramFiles(x86)\chimerax\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
     60===== Log before crash start =====
     61Opened tail_15A_resample.mrc as #3, grid size 480,480,480, pixel 1.05, shown
     62at level 2.14, step 2, values float32 
     63opened ChimeraX session 
     64
     65> show #!7 models
     66
     67> hide #!7 models
     68
     69> show #!7 models
     70
     71> hide #!3 models
     72
     73> show #!3 models
     74
     75> hide #!7 models
     76
     77> show #!7 models
     78
     79> hide #!3 models
     80
     81> ui tool show "Side View"
     82
     83> show #!2 models
     84
     85> hide #!2 models
     86
     87> show #!3 models
     88
     89> hide #!3 models
     90
     91> show #!3 models
     92
     93> hide #!3 models
     94
     95> show #!3 models
     96
     97> hide #!3 models
     98
     99> show #!3 models
     100
     101> hide #!3 models
     102
     103> show #!3 models
     104
     105> hide #!3 models
     106
     107> show #!3 models
     108
     109> close session
     110
     111> open E:/cryo-EM-data/gp1314/coot_model/final_map_pdb/gp14-hexamer-fullcap-
     112> RAO.pdb E:/cryo-EM-data/gp1314/coot_model/final_map_pdb/gp15-hexamer-
     113> fullcap-RAO.pdb
     114
     115Chain information for gp14-hexamer-fullcap-RAO.pdb #1 
     116--- 
     117Chain | Description 
     118A B C D E F | No description available 
     119 
     120Chain information for gp15-hexamer-fullcap-RAO.pdb #2 
     121--- 
     122Chain | Description 
     123A B C D E F | No description available 
     124 
     125
     126> hide atoms
     127
     128> show cartoons
     129
     130> select #1
     131
     13211958 atoms, 12252 bonds, 1464 residues, 1 model selected 
     133
     134> ~select #1
     135
     136Nothing selected 
     137
     138> select #1
     139
     14011958 atoms, 12252 bonds, 1464 residues, 1 model selected 
     141
     142> coulombic sel
     143
     144Using Amber 20 recommended default charges and atom types for standard
     145residues 
     146Coulombic values for gp14-hexamer-fullcap-RAO.pdb_A SES surface #1.1: minimum,
     147-19.72, mean -3.08, maximum 15.01 
     148Coulombic values for gp14-hexamer-fullcap-RAO.pdb_B SES surface #1.2: minimum,
     149-21.45, mean -3.11, maximum 15.14 
     150Coulombic values for gp14-hexamer-fullcap-RAO.pdb_C SES surface #1.3: minimum,
     151-18.92, mean -3.11, maximum 14.99 
     152Coulombic values for gp14-hexamer-fullcap-RAO.pdb_D SES surface #1.4: minimum,
     153-18.53, mean -3.10, maximum 15.12 
     154Coulombic values for gp14-hexamer-fullcap-RAO.pdb_E SES surface #1.5: minimum,
     155-23.35, mean -3.12, maximum 15.17 
     156Coulombic values for gp14-hexamer-fullcap-RAO.pdb_F SES surface #1.6: minimum,
     157-24.84, mean -3.07, maximum 15.18 
     158To also show corresponding color key, enter the above coulombic command and
     159add key true 
     160
     161> select #2
     162
     16313308 atoms, 13668 bonds, 1632 residues, 1 model selected 
     164
     165> coulombic sel
     166
     167Using Amber 20 recommended default charges and atom types for standard
     168residues 
     169Coulombic values for gp15-hexamer-fullcap-RAO.pdb_A SES surface #2.1: minimum,
     170-23.04, mean -1.98, maximum 17.70 
     171Coulombic values for gp15-hexamer-fullcap-RAO.pdb_B SES surface #2.2: minimum,
     172-25.09, mean -1.96, maximum 17.53 
     173Coulombic values for gp15-hexamer-fullcap-RAO.pdb_C SES surface #2.3: minimum,
     174-23.88, mean -1.96, maximum 17.21 
     175Coulombic values for gp15-hexamer-fullcap-RAO.pdb_D SES surface #2.4: minimum,
     176-22.16, mean -2.00, maximum 18.20 
     177Coulombic values for gp15-hexamer-fullcap-RAO.pdb_E SES surface #2.5: minimum,
     178-32.09, mean -1.97, maximum 18.04 
     179Coulombic values for gp15-hexamer-fullcap-RAO.pdb_F SES surface #2.6: minimum,
     180-26.94, mean -1.97, maximum 17.10 
     181To also show corresponding color key, enter the above coulombic command and
     182add key true 
     183
     184> ~select #2
     185
     1866 models selected 
     187
     188> hide #!2 models
     189
     190> show #!2 models
     191
     192> hide #!1 models
     193
     194> show #!1 models
     195
     196> hide #!2 models
     197
     198> hide #!1 models
     199
     200> show #!2 models
     201
     202cxcmd_as_cmd">select clear
     203
     204> hide #!2,6 atoms
     205
     206> show #!2,6 cartoons
     207
     208> hide #!2 models
     209
     210> show #!1 models
     211
     212> show #!2 models
     213
     214> hide #!2 models
     215
     216> show #3 models
     217
     218> hide #3 models
     219
     220> show #5 models
     221
     222> hide #5 models
     223
     224> show #7 models
     225
     226> hide #7 models
     227
     228> hide #!1 models
     229
     230> select #7
     231
     2325154 atoms, 5250 bonds, 660 residues, 1 model selected 
     233
     234> show #!6 cartoons
     235
     236> show #7 models
     237
     238> show sel cartoons
     239
     240> show #!1 models
     241
     242> hide #!6 models
     243
     244> coulombic sel
     245
     246The following heavy (non-hydrogen) atoms are missing, which may result in
     247inaccurate electrostatics: 
     248GTA-stopper-6mer.pdb #7/3B ALA 112 OXT 
     249GTA-stopper-6mer.pdb #7/3C ALA 112 OXT 
     250GTA-stopper-6mer.pdb #7/3E ALA 112 OXT 
     251GTA-stopper-6mer.pdb #7/3F ALA 112 OXT 
     252GTA-stopper-6mer.pdb #7/3D ALA 112 OXT 
     253GTA-stopper-6mer.pdb #7/3A ALA 112 OXT 
     254
     255Using Amber 20 recommended default charges and atom types for standard
     256residues 
     257Coulombic values for GTA-stopper-6mer.pdb_3A SES surface #7.1: minimum,
     258-12.44, mean 0.29, maximum 11.98 
     259Coulombic values for GTA-stopper-6mer.pdb_3B SES surface #7.2: minimum,
     260-12.37, mean 0.30, maximum 10.65 
     261Coulombic values for GTA-stopper-6mer.pdb_3C SES surface #7.3: minimum,
     262-12.24, mean 0.29, maximum 9.73 
     263Coulombic values for GTA-stopper-6mer.pdb_3D SES surface #7.4: minimum,
     264-12.22, mean 0.31, maximum 10.41 
     265Coulombic values for GTA-stopper-6mer.pdb_3E SES surface #7.5: minimum,
     266-12.56, mean 0.30, maximum 10.38 
     267Coulombic values for GTA-stopper-6mer.pdb_3F SES surface #7.6: minimum,
     268-12.58, mean 0.28, maximum 9.65 
     269To also show corresponding color key, enter the above coulombic command and
     270add key true 
     271
     272> show #!2 models
     273
     274> hide #!2 models
     275
     276> show #!2 models
     277
     278> hide #!2 models
     279
     280> hide #!1 models
     281
     282> show #!1 models
     283
     284> hide #!1 models
     285
     286> show #!1 models
     287
     288> show #!2 models
     289
     290> hide #!2 models
     291
     292> show #!2 models
     293
     294> undo
     295
     296> coulombic sel
     297
     298Coulombic values for GTA-stopper-6mer.pdb_3A SES surface #7.1: minimum,
     299-12.44, mean 0.29, maximum 11.98 
     300Coulombic values for GTA-stopper-6mer.pdb_3B SES surface #7.2: minimum,
     301-12.37, mean 0.30, maximum 10.65 
     302Coulombic values for GTA-stopper-6mer.pdb_3C SES surface #7.3: minimum,
     303-12.24, mean 0.29, maximum 9.73 
     304Coulombic values for GTA-stopper-6mer.pdb_3D SES surface #7.4: minimum,
     305-12.22, mean 0.31, maximum 10.41 
     306Coulombic values for GTA-stopper-6mer.pdb_3E SES surface #7.5: minimum,
     307-12.56, mean 0.30, maximum 10.38 
     308Coulombic values for GTA-stopper-6mer.pdb_3F SES surface #7.6: minimum,
     309-12.58, mean 0.28, maximum 9.65 
     310To also show corresponding color key, enter the above coulombic command and
     311add key true 
     312
     313> select clear
     314
     315> show #!2 models
     316
     317> select #2
     318
     3193174 atoms, 3078 bonds, 6 pseudobonds, 528 residues, 2 models selected 
     320
     321> select clear
     322
     323> hide #!7 models
     324
     325> show #!6 models
     326
     327> hide #!1-2,6 surfaces
     328
     329> hide #!2 models
     330
     331> select #1/F:44
     332
     3338 atoms, 7 bonds, 1 residue, 1 model selected 
     334
     335> select up
     336
     337130 atoms, 129 bonds, 17 residues, 1 model selected 
     338
     339> select up
     340
     3411316 atoms, 1348 bonds, 167 residues, 1 model selected 
     342
     343> select add #6/E:40
     344
     3451323 atoms, 1355 bonds, 168 residues, 2 models selected 
     346
     347> select up
     348
     3491588 atoms, 1628 bonds, 200 residues, 3 models selected 
     350
     351> select up
     352
     3532207 atoms, 2259 bonds, 276 residues, 3 models selected 
     354
     355> select ~sel
     356
     35727495 atoms, 27858 bonds, 11 pseudobonds, 3516 residues, 8 models selected 
     358
     359> hide sel & #!1,6 cartoons
     360
     361> show #3 models
     362
     363> hide #3 models
     364
     365> show #3 models
     366
     367> select #3/A:70
     368
     36910 atoms, 10 bonds, 1 residue, 1 model selected 
     370
     371> select up
     372
     373105 atoms, 110 bonds, 12 residues, 1 model selected 
     374
     375> select up
     376
     3771031 atoms, 998 bonds, 177 residues, 1 model selected 
     378
     379> show #!7 models
     380
     381> show #!2 models
     382
     383> hide #!2 models
     384
     385> select #7/3B:51@CZ
     386
     3871 atom, 1 residue, 1 model selected 
     388
     389> select up
     390
     39111 atoms, 11 bonds, 1 residue, 2 models selected 
     392
     393> select up
     394
     39531 atoms, 31 bonds, 4 residues, 2 models selected 
     396
     397> select up
     398
     399859 atoms, 875 bonds, 110 residues, 2 models selected 
     400
     401> select up
     402
     4035154 atoms, 5250 bonds, 660 residues, 2 models selected 
     404
     405> coulombic sel
     406
     407Coulombic values for GTA-stopper-6mer.pdb_3A SES surface #7.1: minimum,
     408-12.44, mean 0.29, maximum 11.98 
     409Coulombic values for GTA-stopper-6mer.pdb_3B SES surface #7.2: minimum,
     410-12.37, mean 0.30, maximum 10.65 
     411Coulombic values for GTA-stopper-6mer.pdb_3C SES surface #7.3: minimum,
     412-12.24, mean 0.29, maximum 9.73 
     413Coulombic values for GTA-stopper-6mer.pdb_3D SES surface #7.4: minimum,
     414-12.22, mean 0.31, maximum 10.41 
     415Coulombic values for GTA-stopper-6mer.pdb_3E SES surface #7.5: minimum,
     416-12.56, mean 0.30, maximum 10.38 
     417Coulombic values for GTA-stopper-6mer.pdb_3F SES surface #7.6: minimum,
     418-12.58, mean 0.28, maximum 9.65 
     419To also show corresponding color key, enter the above coulombic command and
     420add key true 
     421
     422> select clear
     423
     424
     425===== Log before crash end =====
     426
     427Log:
     428UCSF ChimeraX version: 1.3 (2021-12-08) 
     429© 2016-2021 Regents of the University of California. All rights reserved. 
     430
     431> open D:\\\CryoEM\\\KCRI\\\PAPER\\\9_movies\\\CSN\\\CSN_movie_0819.cxs
     432
     433registering illegal selector name "helix bundle " 
     434
     435registering illegal selector name "helix bundle" 
     436
     437registering illegal selector name "helix_bundle" 
     438
     439registering illegal selector name "4HB" 
     440
     441Log from Mon Aug 22 17:28:01 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     442© 2016-2021 Regents of the University of California. All rights reserved. 
     443
     444> open D:\\\CryoEM\\\KCRI\\\PAPER\\\9_movies\\\CSN\\\CSN_movie_0819.cxs
     445
     446registering illegal selector name "helix bundle " 
     447
     448registering illegal selector name "helix bundle" 
     449
     450registering illegal selector name "helix_bundle" 
     451
     452registering illegal selector name "4HB" 
     453
     454Log from Mon Aug 22 13:56:21 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     455© 2016-2021 Regents of the University of California. All rights reserved. 
     456
     457> open /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs format session
     458
     459Log from Sun Aug 21 08:34:05 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     460© 2016-2021 Regents of the University of California. All rights reserved. 
     461
     462> open D:\\\CryoEM\\\KCRI\\\PAPER\\\9_movies\\\CSN\\\CSN_movie_0819.cxs
     463
     464Log from Sun Aug 21 08:18:24 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     465© 2016-2021 Regents of the University of California. All rights reserved. 
     466
     467> open /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs format session
     468
     469Log from Sat Aug 20 21:43:34 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     470© 2016-2021 Regents of the University of California. All rights reserved. 
     471
     472> open D:\\\CryoEM\\\KCRI\\\PAPER\\\9_movies\\\CSN\\\CSN_movie_0819.cxs
     473
     474Log from Sat Aug 20 21:39:26 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     475© 2016-2021 Regents of the University of California. All rights reserved. 
     476
     477> open /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs format session
     478
     479Log from Sat Aug 20 20:55:22 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     480© 2016-2021 Regents of the University of California. All rights reserved. 
     481
     482> open D:\\\CryoEM\\\KCRI\\\PAPER\\\9_movies\\\CSN\\\CSN_movie_0819.cxs
     483
     484Log from Sat Aug 20 20:50:23 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     485© 2016-2021 Regents of the University of California. All rights reserved. 
     486
     487> open CSN_movie_0819.cxs
     488
     489Log from Sat Aug 20 19:05:25 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     490© 2016-2021 Regents of the University of California. All rights reserved. 
     491
     492> open E:\\\cryo-EM\\\KCRI\\\PAPER\\\9_movies\\\CSN\\\CSN_movie_0819.cxs
     493
     494Log from Sat Aug 20 15:34:08 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     495© 2016-2021 Regents of the University of California. All rights reserved. 
     496
     497> open E:\cryo-EM\KCRI\PAPER\9_movies\CSN\CSN_movie_0819.cxs format session
     498
     499Log from Fri Aug 19 20:52:18 2022UCSF ChimeraX version: 1.3 (2021-12-08) 
     500© 2016-2021 Regents of the University of California. All rights reserved. 
     501How to cite UCSF ChimeraX 
     502
     503> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer.pdb
     504
     505Chain information for KCR-8mer.pdb #1 
     506--- 
     507Chain | Description 
     508A B G J N P S U | No description available 
     509C F H I M O T V | No description available 
     510D E K L Q R W X | No description available 
     511 
     512
     513> open E:/cryo-
     514> EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR_dimer_j369_0806.pdb
     515
     516Summary of feedback from opening E:/cryo-
     517EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR_dimer_j369_0806.pdb 
     518--- 
     519warnings | Cannot find LINK/SSBOND residue HIS (77 ) 
     520Cannot find LINK/SSBOND residue CYS (56 ) 
     521Cannot find LINK/SSBOND residue CYS (68 ) 
     522Cannot find LINK/SSBOND residue HIS (82 ) 
     523Cannot find LINK/SSBOND residue HIS (82 ) 
     52417 messages similar to the above omitted 
     525 
     526Chain information for KCR_dimer_j369_0806.pdb #2 
     527--- 
     528Chain | Description 
     529S | No description available 
     530T V | No description available 
     531U | No description available 
     532W X | No description available 
     533 
     534
     535> open E:/cryo-
     536> EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/N8~KCR_dimer_j526_0626_final.pdb
     537
     538Chain information for N8~KCR_dimer_j526_0626_final.pdb #3 
     539--- 
     540Chain | Description 
     541S | No description available 
     542T V | No description available 
     543U | No description available 
     544W X | No description available 
     545 
     546
     547> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/N8-dimer.pdb
     548
     549Chain information for N8-dimer.pdb #4 
     550--- 
     551Chain | Description 
     552N O | No description available 
     553 
     554
     555> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/CSN-4d10.pdb
     556
     557Chain information for CSN-4d10.pdb #5 
     558--- 
     559Chain | Description 
     560A | No description available 
     561B | No description available 
     562C | No description available 
     563D | No description available 
     564E | No description available 
     565F | No description available 
     566G | No description available 
     567H | No description available 
     568 
     569
     570> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/HA-CSN-
     571> KCR~N8_whole_0725.pdb
     572
     573Summary of feedback from opening E:/cryo-
     574EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/HA-CSN-KCR~N8_whole_0725.pdb 
     575--- 
     576warnings | Cannot find LINK/SSBOND residue HIS (80 ) 
     577Cannot find LINK/SSBOND residue CYS (56 ) 
     578Cannot find LINK/SSBOND residue CYS (75 ) 
     579Cannot find LINK/SSBOND residue CYS (68 ) 
     580Cannot find LINK/SSBOND residue HIS (82 ) 
     58117 messages similar to the above omitted 
     582 
     583Chain information for HA-CSN-KCR~N8_whole_0725.pdb #6 
     584--- 
     585Chain | Description 
     586A | No description available 
     587B | No description available 
     588C | No description available 
     589D | No description available 
     590E | No description available 
     591F | No description available 
     592G | No description available 
     593H | No description available 
     594N | No description available 
     595S | No description available 
     596T V | No description available 
     597U | No description available 
     598W X | No description available 
     599 
     600
     601> open E:/cryo-
     602> EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/CSN-N8~KCR_combinemap_0725.pdb
     603
     604Summary of feedback from opening E:/cryo-
     605EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/CSN-N8~KCR_combinemap_0725.pdb 
     606--- 
     607warnings | Cannot find LINK/SSBOND residue CYS (45 ) 
     608Cannot find LINK/SSBOND residue CYS (42 ) 
     609Cannot find LINK/SSBOND residue HIS (77 ) 
     610Cannot find LINK/SSBOND residue HIS (80 ) 
     611Cannot find LINK/SSBOND residue CYS (68 ) 
     6128 messages similar to the above omitted 
     613 
     614Chain information for CSN-N8~KCR_combinemap_0725.pdb #7 
     615--- 
     616Chain | Description 
     617A | No description available 
     618B | No description available 
     619C | No description available 
     620D | No description available 
     621E | No description available 
     622F | No description available 
     623G | No description available 
     624H | No description available 
     625S | No description available 
     626T | No description available 
     627U | No description available 
     628V | No description available 
     629W X | No description available 
     630 
     631
     632> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-
     633> CSN_whole_job489_0725.pdb
     634
     635Summary of feedback from opening E:/cryo-
     636EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-CSN_whole_job489_0725.pdb 
     637--- 
     638warnings | Cannot find LINK/SSBOND residue CYS (42 ) 
     639Cannot find LINK/SSBOND residue CYS (83 ) 
     640Cannot find LINK/SSBOND residue CYS (42 ) 
     641Cannot find LINK/SSBOND residue HIS (77 ) 
     642Cannot find LINK/SSBOND residue HIS (82 ) 
     64313 messages similar to the above omitted 
     644 
     645Chain information for KCR-CSN_whole_job489_0725.pdb #8 
     646--- 
     647Chain | Description 
     648A | No description available 
     649B | No description available 
     650C | No description available 
     651D | No description available 
     652E | No description available 
     653F | No description available 
     654G | No description available 
     655H | No description available 
     656S | No description available 
     657T | No description available 
     658U | No description available 
     659V | No description available 
     660W X | No description available 
     661 
     662
     663> hide atoms
     664
     665> show cartoons
     666
     667> save E:/cryo-EM/KCRI/PAPER/9_movies/CSN/CSN_movie_0819.cxs
     668
     669——— End of log from Fri Aug 19 20:52:18 2022 ———
     670
     671opened ChimeraX session 
     672
     673> ui tool show "Side View"
     674
     675> turn x 90
     676
     677> hide #4#!2-3,5-8 target m
     678
     679> turn x 90
     680
     681> turn y 90
     682
     683[Repeated 3 time(s)]
     684
     685> windowsize 640 480
     686
     687> turn y 90
     688
     689[Repeated 7 time(s)]
     690
     691> roll 1 y 360
     692
     693Expected an axis vector or a keyword 
     694
     695> roll y 1 360
     696
     697> roll y 1 90
     698
     699> roll y 1 45
     700
     701> roll y 1 90
     702
     703[Repeated 1 time(s)]
     704
     705> view name p1
     706
     707> color /V yellow green
     708
     709> color /U light sea green
     710
     711> color /S pale turquoise
     712
     713> color /T wheat
     714
     715> color /W plum
     716
     717> color /A tomato
     718
     719> color /B light sky blue
     720
     721> color /C medium slate blue
     722
     723> color /D medium orchid
     724
     725> color /E orange
     726
     727> color /F pink
     728
     729> color /G cornflower blue
     730
     731> color /H dark sea green
     732
     733> color /N deep pink
     734
     735> color /O gold
     736
     737> color #1/H,K,J,G,I,L chocolate target c
     738
     739> color #1/M,N,O,P,Q,R lime green target c
     740
     741> color #1/A,B,C,D,E,F olive target c
     742
     743> combine #1/A/B/C/D/E/F modelId #9
     744
     745> hide #!1 models
     746
     747> hide #!9 models
     748
     749> show #!9 models
     750
     751> hide #!9 models
     752
     753> show #!9 models
     754
     755> close #9
     756
     757> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-3.pdb
     758> E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-2.pdb E:/cryo-
     759> EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-4.pdb
     760
     761Summary of feedback from opening E:/cryo-
     762EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-3.pdb 
     763--- 
     764warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 14
     765GLU A 26 1 13 
     766Start residue of secondary structure not found: HELIX 2 2 LYS A 46 CYS A 52 1
     7677 
     768Start residue of secondary structure not found: HELIX 3 3 PHE A 56 MET A 61 1
     7696 
     770Start residue of secondary structure not found: HELIX 4 4 ALA A 79 THR A 91 1
     77113 
     772Start residue of secondary structure not found: HELIX 5 5 VAL A 101 LEU A 111
     7731 11 
     774462 messages similar to the above omitted 
     775 
     776Summary of feedback from opening E:/cryo-
     777EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-2.pdb 
     778--- 
     779warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 14
     780GLU A 26 1 13 
     781Start residue of secondary structure not found: HELIX 2 2 LYS A 46 CYS A 52 1
     7827 
     783Start residue of secondary structure not found: HELIX 3 3 PHE A 56 MET A 61 1
     7846 
     785Start residue of secondary structure not found: HELIX 4 4 ALA A 79 THR A 91 1
     78613 
     787Start residue of secondary structure not found: HELIX 5 5 VAL A 101 LEU A 111
     7881 11 
     789471 messages similar to the above omitted 
     790 
     791Summary of feedback from opening E:/cryo-
     792EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-4.pdb 
     793--- 
     794warnings | Start residue of secondary structure not found: HELIX 87 87 ALA J
     79514 GLU J 26 1 13 
     796Start residue of secondary structure not found: HELIX 88 88 LYS J 46 CYS J 52
     7971 7 
     798Start residue of secondary structure not found: HELIX 89 89 PHE J 56 MET J 61
     7991 6 
     800Start residue of secondary structure not found: HELIX 90 90 ALA J 79 THR J 91
     8011 13 
     802Start residue of secondary structure not found: HELIX 91 91 VAL J 101 LEU J
     803111 1 11 
     804463 messages similar to the above omitted 
     805 
     806Chain information for KCR-8mer-3.pdb #9 
     807--- 
     808Chain | Description 
     809M O | No description available 
     810N P | No description available 
     811Q R | No description available 
     812 
     813Chain information for KCR-8mer-2.pdb #10 
     814--- 
     815Chain | Description 
     816H I M | No description available 
     817J | No description available 
     818K L | No description available 
     819 
     820Chain information for KCR-8mer-4.pdb #11 
     821--- 
     822Chain | Description 
     823A B | No description available 
     824C F | No description available 
     825D E | No description available 
     826 
     827
     828> color /V yellow green
     829
     830> color /U light sea green
     831
     832> color /S pale turquoise
     833
     834> color /T wheat
     835
     836> color /W plum
     837
     838> color /A tomato
     839
     840> color /B light sky blue
     841
     842> color /C medium slate blue
     843
     844> color /D medium orchid
     845
     846> color /E orange
     847
     848> color /F pink
     849
     850> color /G cornflower blue
     851
     852> color /H dark sea green
     853
     854> color /N deep pink
     855
     856> color /O gold
     857
     858> color #1,9,10,11/H,K,J,G,I,L chocolate
     859
     860> color #1,9,10,11/M,N,O,P,Q,R lime green
     861
     862> color #1,9,10,11/A,B,C,D,E,F olive
     863
     864> hide #!9-11 atoms
     865
     866> show #!9-11 cartoons
     867
     868> fly p1
     869
     870> select #9
     871
     87222340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     873
     874> ui mousemode right "translate selected atoms"
     875
     876> undo
     877
     878> select clear
     879
     880> hide #!9 models
     881
     882> hide #!10 models
     883
     884> show #!10 models
     885
     886> show #!9 models
     887
     888> hide #!9 models
     889
     890> show #!9 models
     891
     892> hide #!9 models
     893
     894> show #!9 models
     895
     896> close #9-11
     897
     898> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-2.pdb
     899
     900Summary of feedback from opening E:/cryo-
     901EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-2.pdb 
     902--- 
     903warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 14
     904GLU A 26 1 13 
     905Start residue of secondary structure not found: HELIX 2 2 LYS A 46 CYS A 52 1
     9067 
     907Start residue of secondary structure not found: HELIX 3 3 PHE A 56 MET A 61 1
     9086 
     909Start residue of secondary structure not found: HELIX 4 4 ALA A 79 THR A 91 1
     91013 
     911Start residue of secondary structure not found: HELIX 5 5 VAL A 101 LEU A 111
     9121 11 
     913462 messages similar to the above omitted 
     914 
     915Chain information for KCR-8mer-2.pdb #9 
     916--- 
     917Chain | Description 
     918G J | No description available 
     919H I | No description available 
     920K L | No description available 
     921 
     922
     923> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-3.pdb
     924
     925Summary of feedback from opening E:/cryo-
     926EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-3.pdb 
     927--- 
     928warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 14
     929GLU A 26 1 13 
     930Start residue of secondary structure not found: HELIX 2 2 LYS A 46 CYS A 52 1
     9317 
     932Start residue of secondary structure not found: HELIX 3 3 PHE A 56 MET A 61 1
     9336 
     934Start residue of secondary structure not found: HELIX 4 4 ALA A 79 THR A 91 1
     93513 
     936Start residue of secondary structure not found: HELIX 5 5 VAL A 101 LEU A 111
     9371 11 
     938462 messages similar to the above omitted 
     939 
     940Chain information for KCR-8mer-3.pdb #10 
     941--- 
     942Chain | Description 
     943M O | No description available 
     944N P | No description available 
     945Q R | No description available 
     946 
     947
     948> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-4.pdb
     949
     950Summary of feedback from opening E:/cryo-
     951EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-4.pdb 
     952--- 
     953warnings | Start residue of secondary structure not found: HELIX 87 87 ALA J
     95414 GLU J 26 1 13 
     955Start residue of secondary structure not found: HELIX 88 88 LYS J 46 CYS J 52
     9561 7 
     957Start residue of secondary structure not found: HELIX 89 89 PHE J 56 MET J 61
     9581 6 
     959Start residue of secondary structure not found: HELIX 90 90 ALA J 79 THR J 91
     9601 13 
     961Start residue of secondary structure not found: HELIX 91 91 VAL J 101 LEU J
     962111 1 11 
     963463 messages similar to the above omitted 
     964 
     965Chain information for KCR-8mer-4.pdb #11 
     966--- 
     967Chain | Description 
     968A B | No description available 
     969C F | No description available 
     970D E | No description available 
     971 
     972
     973> color #1,9,10,11/H,K,J,G,I,L chocolate
     974
     975> color #1,9,10,11/M,N,O,P,Q,R lime green
     976
     977> color #1,9,10,11/A,B,C,D,E,F olive
     978
     979> hide #!9-11 atoms
     980
     981> show #!9-11 cartoons
     982
     983> fly p1
     984
     985> select #9
     986
     98722340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     988
     989> select #10
     990
     99122340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     992
     993> select #9
     994
     99522340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     996
     997> ~select #9
     998
     999Nothing selected 
     1000
     1001> select #10
     1002
     100322340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1004
     1005> show #!1 models
     1006
     1007> ~select #10
     1008
     1009Nothing selected 
     1010
     1011> select #11
     1012
     101322340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1014
     1015> select #9
     1016
     101722340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1018
     1019> select #10
     1020
     102122340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1022
     1023> select #11
     1024
     102522340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1026
     1027> select #10
     1028
     102922340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1030
     1031> select #9
     1032
     103322340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1034
     1035> fly p1
     1036
     1037> hide #!9 models
     1038
     1039> hide #!10 models
     1040
     1041> hide #!11 models
     1042
     1043> ~select #9
     1044
     1045Nothing selected 
     1046
     1047> show #!9 models
     1048
     1049> hide #!9 models
     1050
     1051> show #!9 models
     1052
     1053> hide #!9 models
     1054
     1055> turn y 90
     1056
     1057> view name p1
     1058
     1059> show #!9 models
     1060
     1061> show #!10 models
     1062
     1063> show #!11 models
     1064
     1065> select #10
     1066
     106722340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1068
     1069> select #11
     1070
     107122340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1072
     1073> fly p1
     1074
     1075[Repeated 2 time(s)]
     1076
     1077> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-2.pdb
     1078
     1079Summary of feedback from opening E:/cryo-
     1080EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-2.pdb 
     1081--- 
     1082warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 14
     1083GLU A 26 1 13 
     1084Start residue of secondary structure not found: HELIX 2 2 LYS A 46 CYS A 52 1
     10857 
     1086Start residue of secondary structure not found: HELIX 3 3 PHE A 56 MET A 61 1
     10876 
     1088Start residue of secondary structure not found: HELIX 4 4 ALA A 79 THR A 91 1
     108913 
     1090Start residue of secondary structure not found: HELIX 5 5 VAL A 101 LEU A 111
     10911 11 
     1092462 messages similar to the above omitted 
     1093 
     1094Chain information for KCR-8mer-2.pdb #12 
     1095--- 
     1096Chain | Description 
     1097G J | No description available 
     1098H I | No description available 
     1099K L | No description available 
     1100 
     1101
     1102> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-3.pdb
     1103
     1104Summary of feedback from opening E:/cryo-
     1105EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-3.pdb 
     1106--- 
     1107warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 14
     1108GLU A 26 1 13 
     1109Start residue of secondary structure not found: HELIX 2 2 LYS A 46 CYS A 52 1
     11107 
     1111Start residue of secondary structure not found: HELIX 3 3 PHE A 56 MET A 61 1
     11126 
     1113Start residue of secondary structure not found: HELIX 4 4 ALA A 79 THR A 91 1
     111413 
     1115Start residue of secondary structure not found: HELIX 5 5 VAL A 101 LEU A 111
     11161 11 
     1117462 messages similar to the above omitted 
     1118 
     1119Chain information for KCR-8mer-3.pdb #13 
     1120--- 
     1121Chain | Description 
     1122M O | No description available 
     1123N P | No description available 
     1124Q R | No description available 
     1125 
     1126
     1127> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-4.pdb
     1128
     1129Summary of feedback from opening E:/cryo-
     1130EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-4.pdb 
     1131--- 
     1132warnings | Start residue of secondary structure not found: HELIX 87 87 ALA J
     113314 GLU J 26 1 13 
     1134Start residue of secondary structure not found: HELIX 88 88 LYS J 46 CYS J 52
     11351 7 
     1136Start residue of secondary structure not found: HELIX 89 89 PHE J 56 MET J 61
     11371 6 
     1138Start residue of secondary structure not found: HELIX 90 90 ALA J 79 THR J 91
     11391 13 
     1140Start residue of secondary structure not found: HELIX 91 91 VAL J 101 LEU J
     1141111 1 11 
     1142463 messages similar to the above omitted 
     1143 
     1144Chain information for KCR-8mer-4.pdb #14 
     1145--- 
     1146Chain | Description 
     1147A B | No description available 
     1148C F | No description available 
     1149D E | No description available 
     1150 
     1151
     1152> color #1,9-14/H,K,J,G,I,L chocolate
     1153
     1154> color #1,9-14,11/M,N,O,P,Q,R lime green
     1155
     1156> color #1,9-14,11/A,B,C,D,E,F olive
     1157
     1158> ~select #11
     1159
     1160Nothing selected 
     1161
     1162> morph #9,11 frames 30
     1163
     1164Computed 31 frame morph #15 
     1165
     1166> coordset #15 1,31
     1167
     1168> show #!9 models
     1169
     1170> close #15
     1171
     1172> morph #12,9 frames 30
     1173
     1174Computed 31 frame morph #15 
     1175
     1176> coordset #15 1,31
     1177
     1178> morph #13,10 frames 30
     1179
     1180Computed 31 frame morph #16 
     1181
     1182> coordset #16 1,31
     1183
     1184> morph #14,11 frames 30
     1185
     1186Computed 31 frame morph #17 
     1187
     1188> coordset #17 1,31
     1189
     1190> hide #!1,15-17 atoms
     1191
     1192> show #!1,15-17 cartoons
     1193
     1194> coordset #15,16,17
     1195
     1196> hide #!1 models
     1197
     1198> show #!2 models
     1199
     1200> coordset #15,16,17
     1201
     1202> style #!2,15-17 ball
     1203
     1204Changed 89317 atom styles 
     1205
     1206> set bgColor white
     1207
     1208> set bgColor black
     1209
     1210> show #!12 models
     1211
     1212> show #!13 models
     1213
     1214> hide #!12 models
     1215
     1216> hide #!13 models
     1217
     1218> show #!9 models
     1219
     1220> show #!10 models
     1221
     1222> show #!11 models
     1223
     1224> hide #!15 models
     1225
     1226> hide #!16 models
     1227
     1228> hide #!17 models
     1229
     1230> hide #!9 models
     1231
     1232> hide #!10 models
     1233
     1234> hide #!11 models
     1235
     1236> show #!9 models
     1237
     1238> show #!10 models
     1239
     1240> show #!11 models
     1241
     1242> select #9
     1243
     124422340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1245
     1246> ~select #9
     1247
     1248Nothing selected 
     1249
     1250> select #10
     1251
     125222340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1253
     1254> select #11
     1255
     125622340 atoms, 22778 bonds, 6 pseudobonds, 2748 residues, 2 models selected 
     1257
     1258> fly p1
     1259
     1260> show #!16 models
     1261
     1262> show #!17 models
     1263
     1264> show #!15 models
     1265
     1266> close #15-17
     1267
     1268> morph #12,9 frames 30
     1269
     1270Computed 31 frame morph #15 
     1271
     1272> coordset #15 1,31
     1273
     1274> morph #13,10 frames 30
     1275
     1276Computed 31 frame morph #16 
     1277
     1278> coordset #16 1,31
     1279
     1280> morph #14,11 frames 30
     1281
     1282Computed 31 frame morph #17 
     1283
     1284> coordset #17 1,31
     1285
     1286> hide #!2,15-17 atoms
     1287
     1288> show #!2,15-17 cartoons
     1289
     1290> coordset #15,16,17
     1291
     1292> save E:/cryo-EM/KCRI/PAPER/9_movies/CSN/CSN_movie_0819.cxs
     1293
     1294> undo
     1295
     1296> fly p1
     1297
     1298> turn z 90
     1299
     1300> hide #!15 models
     1301
     1302> hide #!16 models
     1303
     1304> hide #!17 models
     1305
     1306> fly p1
     1307
     1308> turn z 90
     1309
     1310> turn y 180
     1311
     1312[Repeated 9 time(s)]
     1313
     1314> view name p2
     1315
     1316> fly p1
     1317
     1318> ~ribbon # *
     1319
     1320> ribbon #2,15-17
     1321
     1322> coordset #15-17
     1323
     1324> view p2 60
     1325
     1326> wait 60
     1327
     1328> show #!15 models
     1329
     1330> show #!16 models
     1331
     1332> show #!17 models
     1333
     1334> ~ribbon # *
     1335
     1336> ribbon #2,15-17
     1337
     1338> coordset #15-17
     1339
     1340> view p2 60
     1341
     1342> wait 60
     1343
     1344> fly p1
     1345
     1346> ~ribbon # *
     1347
     1348> ribbon #2,15-17
     1349
     1350> coordset #15-17
     1351
     1352> view p2 60
     1353
     1354> wait 60
     1355
     1356> show #4 models
     1357
     1358> ribbone# *
     1359
     1360Unknown command: ribbone# * 
     1361
     1362> ribbon # *
     1363
     1364> hide #!15 models
     1365
     1366> hide #!16 models
     1367
     1368> hide #!17 models
     1369
     1370> hide #4 models
     1371
     1372> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/HA-CSN-
     1373> KCR~N8_whole_0725.pdb
     1374
     1375Summary of feedback from opening E:/cryo-
     1376EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/HA-CSN-KCR~N8_whole_0725.pdb 
     1377--- 
     1378warnings | Cannot find LINK/SSBOND residue HIS (80 ) 
     1379Cannot find LINK/SSBOND residue CYS (56 ) 
     1380Cannot find LINK/SSBOND residue CYS (75 ) 
     1381Cannot find LINK/SSBOND residue CYS (68 ) 
     1382Cannot find LINK/SSBOND residue HIS (82 ) 
     138317 messages similar to the above omitted 
     1384 
     1385Chain information for HA-CSN-KCR~N8_whole_0725.pdb #18 
     1386--- 
     1387Chain | Description 
     1388A | No description available 
     1389B | No description available 
     1390C | No description available 
     1391D | No description available 
     1392E | No description available 
     1393F | No description available 
     1394G | No description available 
     1395H | No description available 
     1396N | No description available 
     1397S | No description available 
     1398T V | No description available 
     1399U | No description available 
     1400W X | No description available 
     1401 
     1402
     1403> close #18
     1404
     1405> close #4
     1406
     1407> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/N8-dimer-before-
     1408> removal.pdb
     1409
     1410Chain information for N8-dimer-before-removal.pdb #4 
     1411--- 
     1412Chain | Description 
     1413N O | No description available 
     1414 
     1415
     1416> select #4/N:40
     1417
     14189 atoms, 8 bonds, 1 residue, 1 model selected 
     1419
     1420> select up
     1421
     142225 atoms, 25 bonds, 3 residues, 1 model selected 
     1423
     1424> select up
     1425
     1426591 atoms, 596 bonds, 76 residues, 1 model selected 
     1427
     1428> preset cartoons/nucleotides licorice/ovals
     1429
     1430Changed 463995 atom styles 
     1431Preset expands to these ChimeraX commands:
     1432
     1433   
     1434   
     1435    show nucleic
     1436    hide protein|solvent|H
     1437    surf hide
     1438    style (protein|nucleic|solvent) & @@draw_mode=0 stick
     1439    cartoon
     1440    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
     1441    cartoon style ~(nucleic|strand) x round
     1442    cartoon style (nucleic|strand) x rect
     1443    cartoon style protein modeh default arrows f x round width 1 thick 1
     1444    cartoon style nucleic x round width 1.6 thick 1.6
     1445    nucleotides tube/slab shape ellipsoid
     1446
     1447 
     1448
     1449> preset cartoons/nucleotides ribbons/slabs
     1450
     1451Changed 0 atom styles 
     1452Preset expands to these ChimeraX commands:
     1453
     1454   
     1455   
     1456    show nucleic
     1457    hide protein|solvent|H
     1458    surf hide
     1459    style (protein|nucleic|solvent) & @@draw_mode=0 stick
     1460    cartoon
     1461    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
     1462    cartoon style ~(nucleic|strand) x round
     1463    cartoon style (nucleic|strand) x rect
     1464    nucleotides tube/slab shape box
     1465
     1466 
     1467
     1468> show sel atoms
     1469
     1470> style sel sphere
     1471
     1472Changed 591 atom styles 
     1473
     1474> show sel surfaces
     1475
     1476> hide sel atoms
     1477
     1478> hide sel cartoons
     1479
     1480> transparency (#!4 & sel) 50
     1481
     1482> select clear
     1483
     1484> select #4/N:71@O
     1485
     14861 atom, 1 residue, 1 model selected 
     1487
     1488> select up
     1489
     14908 atoms, 7 bonds, 1 residue, 2 models selected 
     1491
     1492> select up
     1493
     149440 atoms, 39 bonds, 6 residues, 2 models selected 
     1495
     1496> select up
     1497
     1498591 atoms, 596 bonds, 76 residues, 2 models selected 
     1499
     1500> color (#!4 & sel) white
     1501
     1502> transparency (#!4 & sel) 50
     1503
     1504> select clear
     1505
     1506> select #4/N:39@O
     1507
     15081 atom, 1 residue, 1 model selected 
     1509
     1510> select up
     1511
     15129 atoms, 8 bonds, 1 residue, 2 models selected 
     1513
     1514> select up
     1515
     151625 atoms, 25 bonds, 3 residues, 2 models selected 
     1517
     1518> select up
     1519
     1520591 atoms, 596 bonds, 76 residues, 2 models selected 
     1521
     1522> transparency (#!4 & sel) 80
     1523
     1524> select clear
     1525
     1526> select #4/N:8@CD2
     1527
     15281 atom, 1 residue, 1 model selected 
     1529
     1530> select up
     1531
     15328 atoms, 7 bonds, 1 residue, 2 models selected 
     1533
     1534> select up
     1535
     153635 atoms, 34 bonds, 5 residues, 2 models selected 
     1537
     1538> select up
     1539
     1540591 atoms, 596 bonds, 76 residues, 2 models selected 
     1541
     1542> transparency (#!4 & sel) 50
     1543
     1544> graphics silhouettes true
     1545
     1546> graphics silhouettes false
     1547
     1548> select clear
     1549
     1550> select #4/N:40@CB
     1551
     15521 atom, 1 residue, 1 model selected 
     1553
     1554> select up
     1555
     15569 atoms, 8 bonds, 1 residue, 2 models selected 
     1557
     1558> select up
     1559
     156025 atoms, 25 bonds, 3 residues, 2 models selected 
     1561
     1562> select up
     1563
     1564591 atoms, 596 bonds, 76 residues, 2 models selected 
     1565
     1566> hide sel surfaces
     1567
     1568> show sel cartoons
     1569
     1570> save E:/cryo-EM/KCRI/PAPER/9_movies/CSN/CSN_movie_0819.cxs
     1571
     1572——— End of log from Sat Aug 20 15:34:08 2022 ———
     1573
     1574opened ChimeraX session 
     1575
     1576> surface #4/N resolution 10
     1577
     15781 Gaussian surfaces, threshold level 0.054 
     1579
     1580> hide sel cartoons
     1581
     1582> select clear
     1583
     1584> surface #4/N/O resolution 10
     1585
     15862 Gaussian surfaces, threshold level 0.053 - 0.054 
     1587
     1588> select #4/N:40@CB
     1589
     15901 atom, 1 residue, 1 model selected 
     1591
     1592> select up
     1593
     15949 atoms, 8 bonds, 1 residue, 2 models selected 
     1595
     1596> select up
     1597
     159825 atoms, 25 bonds, 3 residues, 2 models selected 
     1599
     1600> select up
     1601
     1602591 atoms, 596 bonds, 76 residues, 2 models selected 
     1603
     1604> transparency (#!4 & sel) 70
     1605
     1606> select clear
     1607
     1608> transparency #4.2 70
     1609
     1610> hide #!2,4 cartoons
     1611
     1612> undo
     1613
     1614> hide #!2,4 cartoons
     1615
     1616> undo
     1617
     1618> select #4
     1619
     16201182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1621
     1622> hide sel cartoons
     1623
     1624> select clear
     1625
     1626> color #4.2 white
     1627
     1628> transparency #4.2 70
     1629
     1630> select clear
     1631
     1632> hide #4.1 models
     1633
     1634> show #4.1 models
     1635
     1636> hide #4.2 models
     1637
     1638> show #4.2 models
     1639
     1640> select #4/N:70@CG2
     1641
     16421 atom, 1 residue, 1 model selected 
     1643
     1644> select up
     1645
     16467 atoms, 6 bonds, 1 residue, 2 models selected 
     1647
     1648> select up
     1649
     165040 atoms, 40 bonds, 5 residues, 2 models selected 
     1651
     1652> select up
     1653
     1654591 atoms, 596 bonds, 76 residues, 2 models selected 
     1655
     1656> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/N8-dimer-before-
     1657> removal.pdb
     1658
     1659Chain information for N8-dimer-before-removal.pdb #18 
     1660--- 
     1661Chain | Description 
     1662N O | No description available 
     1663 
     1664
     1665> movie record
     1666
     1667> turn y 2 180
     1668
     1669> wait 180
     1670
     1671> movie encode "C:\Users\Plum Thirteen\Desktop\movie1.mp4"
     1672
     1673Movie saved to \C:Users\\...\Desktop\movie1.mp4 
     1674 
     1675
     1676> surface #18/N/O resolution 10
     1677
     16782 Gaussian surfaces, threshold level 0.053 - 0.054 
     1679
     1680> hide #!4 models
     1681
     1682> hide #4.1 models
     1683
     1684> hide #4.2 models
     1685
     1686> ~select #4.1
     1687
     1688596 bonds, 3 models selected 
     1689
     1690> select #4.2
     1691
     1692591 atoms, 76 residues, 1 model selected 
     1693
     1694> select #18
     1695
     16961182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1697
     1698> select #18
     1699
     17001182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1701
     1702> select #18.1
     1703
     1704591 atoms, 76 residues, 1 model selected 
     1705
     1706> select #18.2
     1707
     1708591 atoms, 76 residues, 1 model selected 
     1709
     1710> select #18.1
     1711
     1712591 atoms, 76 residues, 1 model selected 
     1713
     1714> select #18
     1715
     17161182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1717
     1718> color #18.1-2 white
     1719
     1720> transparency #18.1-2 70
     1721
     1722> select clear
     1723
     1724> select #18
     1725
     17261182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1727
     1728> hide sel cartoons
     1729
     1730> select #18
     1731
     17321182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1733
     1734> select #18
     1735
     17361182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1737
     1738> show sel cartoons
     1739
     1740> delete atoms sel
     1741
     1742> delete bonds sel
     1743
     1744> open E:/cryo-EM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/N8-dimer-before-
     1745> removal.pdb
     1746
     1747Chain information for N8-dimer-before-removal.pdb #18 
     1748--- 
     1749Chain | Description 
     1750N O | No description available 
     1751 
     1752
     1753> select #18
     1754
     17551182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1756
     1757> hide sel cartoons
     1758
     1759> surface #18/N/O resolution 10
     1760
     17612 Gaussian surfaces, threshold level 0.053 - 0.054 
     1762
     1763> color #18.1-2 white
     1764
     1765> transparency #18.1-2 70
     1766
     1767> select clear
     1768
     1769> hide #!18 models
     1770
     1771> show #!18 models
     1772
     1773> hide #!18 models
     1774
     1775> show #!18 models
     1776
     1777> hide #18.1 models
     1778
     1779> show #18.1 models
     1780
     1781> hide #18
     1782
     1783> hide #18.1
     1784
     1785> hide #18
     1786
     1787> show #18.1 models
     1788
     1789> select #18
     1790
     17911182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1792
     1793> select #18
     1794
     17951182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1796
     1797> hide #!18 models
     1798
     1799> show #!18 models
     1800
     1801> ui mousemode right "translate selected atoms"
     1802
     1803> select #18
     1804
     18051182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1806
     1807> select #18.1
     1808
     1809591 atoms, 76 residues, 1 model selected 
     1810
     1811> select #18
     1812
     18131182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1814
     1815> select #18
     1816
     18171182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1818
     1819> select #18.1
     1820
     1821591 atoms, 76 residues, 1 model selected 
     1822
     1823> select #18.2
     1824
     1825591 atoms, 76 residues, 1 model selected 
     1826
     1827> hide #18.1 models
     1828
     1829> hide #18.2 models
     1830
     1831> show #18.2 models
     1832
     1833> show #18.1 models
     1834
     1835> select #18
     1836
     18371182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1838
     1839> select #18
     1840
     18411182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1842
     1843> fly p2
     1844
     1845> show #!4 models
     1846
     1847> hide #!4 models
     1848
     1849> show #!4 models
     1850
     1851> hide #!4 models
     1852
     1853> show #!4 models
     1854
     1855> show #4.1 models
     1856
     1857> show #4.2 models
     1858
     1859> rename #4 name N8-dimer-br-bound
     1860
     1861> rename #18 name N8-dimer-br-far
     1862
     1863> combine #4 name N8-dimer-near
     1864
     1865> select #19
     1866
     18671182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1868
     1869> hide #19 models
     1870
     1871> show #19 models
     1872
     1873> fly p1
     1874
     1875> ~select #19
     1876
     1877Nothing selected 
     1878
     1879> select #19
     1880
     18811182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1882
     1883> ui mousemode right "translate selected atoms"
     1884
     1885[Repeated 3 time(s)]
     1886
     1887> ~select #19
     1888
     1889Nothing selected 
     1890
     1891> select #19
     1892
     18931182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1894
     1895> hide #!2 models
     1896
     1897> show #!2 models
     1898
     1899> hide #!4 models
     1900
     1901> show #!4 models
     1902
     1903> select up
     1904
     19051182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1906
     1907> hide #19 models
     1908
     1909> show #19 models
     1910
     1911> hide #!18 models
     1912
     1913> show #!18 models
     1914
     1915> hide #!18 models
     1916
     1917> hide #!4 models
     1918
     1919> hide #!2 models
     1920
     1921> show #!2 models
     1922
     1923> show #!4 models
     1924
     1925> hide #!4 models
     1926
     1927> show #!4 models
     1928
     1929> show sel cartoons
     1930
     1931> show #!18 models
     1932
     1933> hide #!18 models
     1934
     1935> hide #!4 models
     1936
     1937> show #!4 models
     1938
     1939> hide sel cartoons
     1940
     1941> surface #19/N/O resolution 10
     1942
     19432 Gaussian surfaces, threshold level 0.053 - 0.054 
     1944
     1945> color #19.1-2 white
     1946
     1947> transparency #19.1-2 70
     1948
     1949> ui mousemode right "translate selected atoms"
     1950
     1951[Repeated 1 time(s)]
     1952
     1953> select #19
     1954
     19551182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1956
     1957> fly p1
     1958
     1959> show #!1 models
     1960
     1961> hide #!4 models
     1962
     1963> select #19
     1964
     19651182 atoms, 1192 bonds, 152 residues, 1 model selected 
     1966
     1967> ui mousemode right "translate selected atoms"
     1968
     1969[Repeated 1 time(s)]
     1970
     1971> ~select #19.2
     1972
     1973Nothing selected 
     1974
     1975> select #19.1
     1976
     1977591 atoms, 76 residues, 1 model selected 
     1978
     1979> select #19.1
     1980
     1981591 atoms, 76 residues, 1 model selected 
     1982
     1983> select #19.1
     1984
     1985591 atoms, 76 residues, 1 model selected 
     1986
     1987> select #19.2
     1988
     1989591 atoms, 76 residues, 1 model selected 
     1990
     1991> select #19.2
     1992
     1993591 atoms, 76 residues, 1 model selected 
     1994
     1995> select #19.2
     1996
     1997591 atoms, 76 residues, 1 model selected 
     1998
     1999> select #19
     2000
     20011182 atoms, 1192 bonds, 152 residues, 1 model selected 
     2002
     2003> select #19
     2004
     20051182 atoms, 1192 bonds, 152 residues, 1 model selected 
     2006
     2007> select #19/O
     2008
     2009591 atoms, 596 bonds, 76 residues, 1 model selected 
     2010
     2011> select #19/N
     2012
     2013591 atoms, 596 bonds, 76 residues, 1 model selected 
     2014
     2015> show #!18 models
     2016
     2017> ui mousemode right "translate selected atoms"
     2018
     2019> select #18/O
     2020
     2021591 atoms, 596 bonds, 76 residues, 1 model selected 
     2022
     2023> select #18/N
     2024
     2025591 atoms, 596 bonds, 76 residues, 1 model selected 
     2026
     2027> fly p1
     2028
     2029> select #18/N
     2030
     2031591 atoms, 596 bonds, 76 residues, 1 model selected 
     2032
     2033> select #18/O
     2034
     2035591 atoms, 596 bonds, 76 residues, 1 model selected 
     2036
     2037> fly p1
     2038
     2039> morph #18,19 frames 30
     2040
     2041Computed 31 frame morph #20 
     2042
     2043> coordset #20 1,31
     2044
     2045> surface #20 resolution 10
     2046
     20472 Gaussian surfaces, threshold level 0.053 - 0.054 
     2048
     2049> hide #!1-2,20 cartoons
     2050
     2051> undo
     2052
     2053> transparency #20.1-2 70
     2054
     2055> color #20.1-2 white
     2056
     2057> transparency #20.1-2 70
     2058
     2059> coordset #20
     2060
     2061> morph #19,4 frames 60
     2062
     2063Computed 61 frame morph #21 
     2064
     2065> coordset #21 1,61
     2066
     2067> rename #19 N8-dimer-br-near
     2068
     2069> select #21
     2070
     20711182 atoms, 1192 bonds, 152 residues, 1 model selected 
     2072
     2073> surface #21 resolution 10
     2074
     20752 Gaussian surfaces, threshold level 0.053 - 0.054 
     2076
     2077> hide #!1 models
     2078
     2079> color #21.1-2 white
     2080
     2081> transparency #21.1-2 70
     2082
     2083> select clear
     2084
     2085> coordset #21
     2086
     2087> save E:/cryo-EM/KCRI/PAPER/9_movies/CSN/CSN_movie_0819.cxs
     2088
     2089——— End of log from Sat Aug 20 19:05:25 2022 ———
     2090
     2091opened ChimeraX session 
     2092
     2093> hide # *
     2094
     2095> show #1
     2096
     2097> fly p1
     2098
     2099> wait 40
     2100
     2101> turn y 2 180
     2102
     2103> wait
     2104
     2105> coordset #20
     2106
     2107> wait 10
     2108
     2109> hide # *
     2110
     2111> show #2,15-17,21
     2112
     2113> coordset #15-17,21
     2114
     2115> view p2 60
     2116
     2117> wait 100
     2118
     2119> hide # *
     2120
     2121> hide #!21 models
     2122
     2123> hide #!20 models
     2124
     2125> hide #!2 models
     2126
     2127> show #4 cartoons
     2128
     2129> show #4 ribbons
     2130
     2131> show #!4 models
     2132
     2133> show #4 cartoons
     2134
     2135> hide #4 ribbons
     2136
     2137> hide #!4 models
     2138
     2139> hide #4.1 models
     2140
     2141> hide #4.2 models
     2142
     2143> show #4 ribbons
     2144
     2145> show #4 surfaces
     2146
     2147> show #!4 models
     2148
     2149> hide #4
     2150
     2151> ~ribbon
     2152
     2153> ~ribbon # *
     2154
     2155> show #4.1,4.2
     2156
     2157> hide #4.1,4.2
     2158
     2159> hide #4.1,4.2 surfaces
     2160
     2161> show #4.1 surfaces
     2162
     2163> hide #4.1 surfaces
     2164
     2165> hide #4 surfaces
     2166
     2167> show #4 surfaces
     2168
     2169> hide #4 surfaces
     2170
     2171> hide #!4 models
     2172
     2173> show #!4 models
     2174
     2175> hide #4.1 models
     2176
     2177> show #4.1 models
     2178
     2179> hide #4.2 models
     2180
     2181> show #4.2 models
     2182
     2183> show #4.1 surfaces
     2184
     2185> hide #4 surfaces
     2186
     2187> ~surface #4
     2188
     2189> hide #!4 models
     2190
     2191> show #!4 models
     2192
     2193> surface close #4
     2194
     2195> surface #4 resolution 10
     2196
     21972 Gaussian surfaces, threshold level 0.053 - 0.054 
     2198
     2199> color #4.1-2 white
     2200
     2201> transparency #4.1-2 70
     2202
     2203> hide #4.2 models
     2204
     2205> show #4.2 models
     2206
     2207> hide #4.1 models
     2208
     2209> show #4.1 models
     2210
     2211> surface #4 resolution 10
     2212
     22132 Gaussian surfaces, threshold level 0.053 - 0.054 
     2214
     2215> color #4.1,4.2 white
     2216
     2217> transparency #4.1,4.2 70
     2218
     2219> surface close #4
     2220
     2221> surface #4 resolution 10
     2222
     22232 Gaussian surfaces, threshold level 0.053 - 0.054 
     2224
     2225> color #4.1,4.2 white
     2226
     2227> transparency #4.1,4.2 70
     2228
     2229> hide #!4 models
     2230
     2231> show #!4 models
     2232
     2233> hide #!4 models
     2234
     2235> show #!4 models
     2236
     2237> color #4.1-2 white
     2238
     2239> transparency #4.1-2 70
     2240
     2241> hide #!4 models
     2242
     2243> show #!4 models
     2244
     2245> show #!1 models
     2246
     2247> show #!2 models
     2248
     2249> show #!3 models
     2250
     2251> show #!*
     2252
     2253> hide # !*
     2254
     2255Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
     2256'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword 
     2257
     2258> hide #!*
     2259
     2260> select clear
     2261
     2262> hide #!*
     2263
     2264> hide #!* models
     2265
     2266> ribbon #1
     2267
     2268> show #4#!1-3,5-21 target m
     2269
     2270> ~ribbon # *
     2271
     2272> hide #!4,!20,!21 models; ribbon #1;
     2273
     2274Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
     2275'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword 
     2276
     2277> ~ribbon # *
     2278
     2279> hide #!4,20,21 models
     2280
     2281> ribbon #1
     2282
     2283> ~ribbon # *
     2284
     2285> hide #!4,20,21 models
     2286
     2287> ribbon #1
     2288
     2289> fly p1
     2290
     2291> wait 40
     2292
     2293> turn y 2 180
     2294
     2295> wait
     2296
     2297> coordset #20
     2298
     2299> wait 10
     2300
     2301> ~ribbon # *
     2302
     2303> ribbon #2,15-17
     2304
     2305> show #!20 models
     2306
     2307> coordset #15-17,20
     2308
     2309> view p2 60
     2310
     2311> wait 100
     2312
     2313> show #!4 models
     2314
     2315> show #!21 models
     2316
     2317> hide #!4,#!20,#!21 models;
     2318
     2319Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
     2320'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword 
     2321
     2322> hide #!4,20,21 models
     2323
     2324> ~ribbon # *
     2325
     2326> ribbon #1
     2327
     2328> fly p1
     2329
     2330> hide #!4,18-21 models
     2331
     2332> ~ribbon # *
     2333
     2334> hide #!4,18-21 models
     2335
     2336> ribbon #1
     2337
     2338> fly p1
     2339
     2340> wait 40
     2341
     2342> turn y 2 180
     2343
     2344> wait
     2345
     2346> coordset #20
     2347
     2348> wait 10
     2349
     2350> ~ribbon # *
     2351
     2352> ribbon #2,15-17
     2353
     2354> show #!20 models
     2355
     2356> coordset #15-17,20
     2357
     2358> view p2 60
     2359
     2360> wait 100
     2361
     2362> ~ribbon # *
     2363
     2364> hide #!4,18-21 models
     2365
     2366> ribbon #1
     2367
     2368> fly p1
     2369
     2370> wait 40
     2371
     2372> turn y 2 180
     2373
     2374> wait
     2375
     2376> show #!20 models
     2377
     2378> coordset #20
     2379
     2380> wait 10
     2381
     2382> ~ribbon # *
     2383
     2384> ribbon #2,15-17
     2385
     2386> show #!21 models
     2387
     2388> coordset #15-17,21
     2389
     2390> view p2 60
     2391
     2392> wait 100
     2393
     2394> ui favorite true "Model Panel"
     2395
     2396> ui favorite false "Model Panel"
     2397
     2398> view #20 clip false
     2399
     2400> slider
     2401
     2402Unknown command: slider 
     2403
     2404> morph slider
     2405
     2406Missing or invalid "structures" argument: invalid structures specifier 
     2407
     2408> coordset #20 slider
     2409
     2410Expected a keyword 
     2411
     2412> coordset slider
     2413
     2414Missing or invalid "structures" argument: empty atom specifier 
     2415
     2416> coordset slider #20
     2417
     2418> ui tool show "Model Loops"
     2419
     2420> ui tool show Toolbar
     2421
     2422> close #20
     2423
     2424> morph #18,19 frames 10 #20
     2425
     2426Expected a keyword 
     2427
     2428> morph #18,19 frames 10
     2429
     2430Computed 11 frame morph #20 
     2431
     2432> coordset #20 1,11
     2433
     2434> ~ribbon # *
     2435
     2436> hide #!4,18-21 models
     2437
     2438> ribbon #1
     2439
     2440> view
     2441
     2442> fly p1
     2443
     2444> wait 40
     2445
     2446> turn y 2 180
     2447
     2448> wait
     2449
     2450> show #!20 models
     2451
     2452> coordset #20
     2453
     2454> wait 60
     2455
     2456> ~ribbon # *
     2457
     2458> ribbon #2,15-17
     2459
     2460> show #!21 models
     2461
     2462> coordset #15-17,21
     2463
     2464> view p2 60
     2465
     2466> wait 100
     2467
     2468> hide #20 models
     2469
     2470> show #20 models
     2471
     2472> fly p1
     2473
     2474> coordset #20
     2475
     2476> hide #20 models
     2477
     2478> show #20 models
     2479
     2480> hide #!21 models
     2481
     2482> show #!21 models
     2483
     2484> hide #!21 models
     2485
     2486> show #!21 models
     2487
     2488> coordset #20
     2489
     2490> coordset #21
     2491
     2492> hide #20 models
     2493
     2494> show #20 models
     2495
     2496> hide #20 models
     2497
     2498> show #20 models
     2499
     2500> show #!19 models
     2501
     2502> hide #!19 models
     2503
     2504> show #!18 models
     2505
     2506> hide #!18 models
     2507
     2508> show #!18 models
     2509
     2510> hide #!18 models
     2511
     2512> show #!19 models
     2513
     2514> hide #!19 models
     2515
     2516> show #!19 models
     2517
     2518> hide #!19 models
     2519
     2520> hide #20 models
     2521
     2522> show #20 models
     2523
     2524> hide #20 models
     2525
     2526> show #20 models
     2527
     2528> close #20
     2529
     2530> show #!18 models
     2531
     2532> show #!19 models
     2533
     2534> fly p1
     2535
     2536> hide #!18 models
     2537
     2538> show #!18 models
     2539
     2540> hide #!19 models
     2541
     2542> show #!19 models
     2543
     2544> morph #18,19 frames 10
     2545
     2546Computed 11 frame morph #20 
     2547
     2548> coordset #20 1,11
     2549
     2550> hide #20 models
     2551
     2552> show #20 models
     2553
     2554> show #!18 models
     2555
     2556> hide #!18 models
     2557
     2558> show #!19 models
     2559
     2560> hide #!19 models
     2561
     2562> show #!18 models
     2563
     2564> show #!19 models
     2565
     2566> hide #!19 models
     2567
     2568> hide #!18 models
     2569
     2570> hide #!21 models
     2571
     2572> show #!21 models
     2573
     2574> close #20
     2575
     2576> morph #18,19 frames 20
     2577
     2578Computed 21 frame morph #20 
     2579
     2580> coordset #20 1,21
     2581
     2582> show #!19 models
     2583
     2584> hide #!19 models
     2585
     2586> show #!18 models
     2587
     2588> hide #!18 models
     2589
     2590> show #!18 models
     2591
     2592> show #!19 models
     2593
     2594> ribbon # 18,19
     2595
     2596> morph #18,19 frames 10
     2597
     2598Computed 11 frame morph #22 
     2599
     2600> coordset #22 1,11
     2601
     2602> show #!18 models
     2603
     2604> hide #!18 models
     2605
     2606> hide #20 models
     2607
     2608> show #20 models
     2609
     2610> close #20
     2611
     2612> close #22
     2613
     2614> morph #18,19 frames 10
     2615
     2616Computed 11 frame morph #20 
     2617
     2618> coordset #20 1,11
     2619
     2620> select #20
     2621
     26221182 atoms, 1192 bonds, 152 residues, 1 model selected 
     2623
     2624> surface #20 resolution 10
     2625
     26262 Gaussian surfaces, threshold level 0.053 - 0.054 
     2627
     2628> select #20
     2629
     26301182 atoms, 1192 bonds, 152 residues, 1 model selected 
     2631
     2632> select #20
     2633
     26341182 atoms, 1192 bonds, 152 residues, 1 model selected 
     2635
     2636> color #20.1-2 white
     2637
     2638> transparency #20.1-2 70
     2639
     2640> ~ribbon #20
     2641
     2642> coordset #20
     2643
     2644> fly p1
     2645
     2646> coordset #20
     2647
     2648> show #!18 models
     2649
     2650> show #!19 models
     2651
     2652> show #!4 models
     2653
     2654> ~ribbon # *
     2655
     2656> hide #!4,18-21 models
     2657
     2658> ribbon #1
     2659
     2660> fly p1
     2661
     2662> wait 40
     2663
     2664> turn y 2 180
     2665
     2666> wait
     2667
     2668> show #!20 models
     2669
     2670> coordset #20
     2671
     2672> wait 60
     2673
     2674> hide #!20 models
     2675
     2676> ~ribbon # *
     2677
     2678> ribbon #2,15-17
     2679
     2680> show #!21 models
     2681
     2682> coordset #15-17,21
     2683
     2684> view p2 60
     2685
     2686> wait 100
     2687
     2688> ~ribbon # *
     2689
     2690> hide #!4,18-21 models
     2691
     2692> ribbon #1
     2693
     2694> fly p1
     2695
     2696> wait 40
     2697
     2698> turn y 2 180
     2699
     2700> wait
     2701
     2702> show #!20 models
     2703
     2704> coordset #20
     2705
     2706> wait 60
     2707
     2708> hide #!20 models
     2709
     2710> ~ribbon # *
     2711
     2712> ribbon #2,15-17
     2713
     2714> show #!21 models
     2715
     2716> coordset #15-17,21
     2717
     2718> view p2 30
     2719
     2720> wait 100
     2721
     2722> fly p1
     2723
     2724> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     2725
     2726——— End of log from Sat Aug 20 20:50:23 2022 ———
     2727
     2728opened ChimeraX session 
     2729
     2730> open D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-1.pdb
     2731
     2732Summary of feedback from opening
     2733D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-1.pdb 
     2734--- 
     2735warnings | Start residue of secondary structure not found: HELIX 87 87 ALA J
     273614 GLU J 26 1 13 
     2737Start residue of secondary structure not found: HELIX 88 88 LYS J 46 CYS J 52
     27381 7 
     2739Start residue of secondary structure not found: HELIX 89 89 PHE J 56 MET J 61
     27401 6 
     2741Start residue of secondary structure not found: HELIX 90 90 ALA J 79 THR J 91
     27421 13 
     2743Start residue of secondary structure not found: HELIX 91 91 VAL J 101 LEU J
     2744111 1 11 
     2745463 messages similar to the above omitted 
     2746 
     2747Chain information for KCR-8mer-1.pdb #22 
     2748--- 
     2749Chain | Description 
     2750A B | No description available 
     2751C F | No description available 
     2752D E | No description available 
     2753 
     2754
     2755> close #22
     2756
     2757> open D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-1.pdb
     2758
     2759Summary of feedback from opening
     2760D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-8mer-1.pdb 
     2761--- 
     2762warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 14
     2763GLU A 26 1 13 
     2764Start residue of secondary structure not found: HELIX 2 2 LYS A 46 CYS A 52 1
     27657 
     2766Start residue of secondary structure not found: HELIX 3 3 PHE A 56 MET A 61 1
     27676 
     2768Start residue of secondary structure not found: HELIX 4 4 ALA A 79 THR A 91 1
     276913 
     2770Start residue of secondary structure not found: HELIX 5 5 VAL A 101 LEU A 111
     27711 11 
     2772462 messages similar to the above omitted 
     2773 
     2774Chain information for KCR-8mer-1.pdb #22 
     2775--- 
     2776Chain | Description 
     2777S U | No description available 
     2778T V | No description available 
     2779W X | No description available 
     2780 
     2781
     2782> hide #!1-3,5-17,21-22 atoms
     2783
     2784> coordset #22,2 frame 10
     2785
     2786Expected a keyword 
     2787
     2788> morph #22,2 frames 10
     2789
     2790Computed 11 frame morph #23 
     2791
     2792> coordset #23 1,11
     2793
     2794> fly p1
     2795
     2796> ~ribbon # *
     2797
     2798> hide #!4,18-21 models
     2799
     2800> ribbon #1
     2801
     2802> ribbon #23
     2803
     2804> save D:/CryoEM/KCRI/PAPER/9_movies/CSN/CSN_movie_0819.cxs
     2805
     2806——— End of log from Sat Aug 20 20:55:22 2022 ———
     2807
     2808opened ChimeraX session 
     2809
     2810> show #!22 models
     2811
     2812> show #!21 models
     2813
     2814> show #!20 models
     2815
     2816> show #!19 models
     2817
     2818> show #!18 models
     2819
     2820> windowsize 640 480
     2821
     2822[Repeated 1 time(s)]
     2823
     2824> ~ribbon # *
     2825
     2826> hide #!4,18-21 models
     2827
     2828> ribbon #1
     2829
     2830> fly p1
     2831
     2832> wait 40
     2833
     2834> turn y 2 180
     2835
     2836> wait
     2837
     2838> show #!20 models
     2839
     2840> coordset #20
     2841
     2842> wait 60
     2843
     2844> hide #!20 models
     2845
     2846> ~ribbon # *
     2847
     2848> ribbon #2,15-17,23
     2849
     2850> show #!21 models
     2851
     2852> coordset #15-17,21,23
     2853
     2854> view p2 30
     2855
     2856> wait 100
     2857
     2858> color /V yellow green
     2859
     2860> color /U light sea green
     2861
     2862> color /S pale turquoise
     2863
     2864> color /T wheat
     2865
     2866> color /W plum
     2867
     2868> color /A tomato
     2869
     2870> color /B light sky blue
     2871
     2872> color /C medium slate blue
     2873
     2874> color /D medium orchid
     2875
     2876> color /E orange
     2877
     2878> color /F pink
     2879
     2880> color /G cornflower blue
     2881
     2882> color /H dark sea green
     2883
     2884> color /N deep pink
     2885
     2886> color /O gold
     2887
     2888> color #1,9-14/H,K,J,G,I,L chocolate
     2889
     2890> color #1,9-14,11/M,N,O,P,Q,R lime green
     2891
     2892> color #1,9-14,11/A,B,C,D,E,F olive
     2893
     2894> show #!4 models
     2895
     2896> ~ribbon # *
     2897
     2898[Repeated 1 time(s)]
     2899
     2900> hide #!21 models
     2901
     2902> hide #!4 models
     2903
     2904> show #!4 models
     2905
     2906> select #4
     2907
     29081182 atoms, 1192 bonds, 152 residues, 1 model selected 
     2909
     2910> select #4
     2911
     29121182 atoms, 1192 bonds, 152 residues, 1 model selected 
     2913
     2914> select #4
     2915
     29161182 atoms, 1192 bonds, 152 residues, 1 model selected 
     2917
     2918> select #4.1
     2919
     2920591 atoms, 76 residues, 1 model selected 
     2921
     2922> select #4.2
     2923
     2924591 atoms, 76 residues, 1 model selected 
     2925
     2926> select #4
     2927
     29281182 atoms, 1192 bonds, 152 residues, 1 model selected 
     2929
     2930> color #4.1-2 white
     2931
     2932> transparency #4.1-2 70
     2933
     2934> color #4 red target c
     2935
     2936> color #4 red
     2937
     2938> undo
     2939
     2940> show #!18 models
     2941
     2942> show #!19 models
     2943
     2944> hide #!19 models
     2945
     2946> select clear
     2947
     2948> color #18.1-2 white
     2949
     2950> transparency #18.1-2 70
     2951
     2952> select clear
     2953
     2954> show #!19 models
     2955
     2956> color #19.1-2 white
     2957
     2958> transparency #19.1-2 70
     2959
     2960> select clear
     2961
     2962> show #!20 models
     2963
     2964> show #!21 models
     2965
     2966> hide #!18 models
     2967
     2968> hide #!19 models
     2969
     2970> hide #!4 models
     2971
     2972> color #20.1-2#21.1-2 white
     2973
     2974> transparency #20.1-2#21.1-2 70
     2975
     2976> select clear
     2977
     2978> show #!19 models
     2979
     2980> show #!18 models
     2981
     2982> show #!2 models
     2983
     2984> hide #!3 models
     2985
     2986> show #!3 models
     2987
     2988> show #!4 models
     2989
     2990> color /V yellow green
     2991
     2992> color /U light sea green
     2993
     2994> color /S pale turquoise
     2995
     2996> color /T wheat
     2997
     2998> color /W plum
     2999
     3000> color /A tomato
     3001
     3002> color /B light sky blue
     3003
     3004> color /C medium slate blue
     3005
     3006> color /D medium orchid
     3007
     3008> color /E orange
     3009
     3010> color /F pink
     3011
     3012> color /G cornflower blue
     3013
     3014> color /H dark sea green
     3015
     3016> color /N deep pink target c
     3017
     3018> color /O gold target c
     3019
     3020> color #1,9-14/H,K,J,G,I,L chocolate
     3021
     3022> color #1,9-14,11/M,N,O,P,Q,R lime green
     3023
     3024> color #1,9-14,11/A,B,C,D,E,F olive
     3025
     3026> windowsize 640 480
     3027
     3028> ~ribbon # *
     3029
     3030> hide #!4,18-21 models
     3031
     3032> ribbon #1
     3033
     3034> fly p1
     3035
     3036> wait 40
     3037
     3038> turn y 2 180
     3039
     3040> wait
     3041
     3042> show #!20 models
     3043
     3044> coordset #20
     3045
     3046> wait 60
     3047
     3048> hide #!20 models
     3049
     3050> ~ribbon # *
     3051
     3052> ribbon #2,15-17,23
     3053
     3054> show #!21 models
     3055
     3056> coordset #15-17,21,23
     3057
     3058> view p2 30
     3059
     3060> ~ribbon #15-17
     3061
     3062> wait 100
     3063
     3064> ~ribbon # *
     3065
     3066> hide #!4,18-21 models
     3067
     3068> ribbon #1
     3069
     3070> fly p1
     3071
     3072> wait 40
     3073
     3074> turn y 2 180
     3075
     3076> wait
     3077
     3078> show #!20 models
     3079
     3080> coordset #20
     3081
     3082> wait 60
     3083
     3084> hide #!20 models
     3085
     3086> ~ribbon # *
     3087
     3088> ribbon #2,15-17,23
     3089
     3090> show #!21 models
     3091
     3092> coordset #15-17,21,23
     3093
     3094> view p2 30
     3095
     3096> wait 30
     3097
     3098> ~ribbon #15-17
     3099
     3100> wait 60
     3101
     3102> ~ribbon # *
     3103
     3104> hide #!4,18-21 models
     3105
     3106> ribbon #1
     3107
     3108> fly p1
     3109
     3110> wait 40
     3111
     3112> turn y 2 180
     3113
     3114> wait
     3115
     3116> show #!20 models
     3117
     3118> coordset #20
     3119
     3120> wait 60
     3121
     3122> hide #!20 models
     3123
     3124> ~ribbon # *
     3125
     3126> hide #!4,18-21 models
     3127
     3128> ribbon #1
     3129
     3130> fly p1
     3131
     3132> wait 40
     3133
     3134> turn y 2 180
     3135
     3136> wait
     3137
     3138> show #!20 models
     3139
     3140> coordset #20
     3141
     3142> wait 60
     3143
     3144> hide #!20 models
     3145
     3146> ~ribbon # *
     3147
     3148> ribbon #2,15-17,23
     3149
     3150> show #!21 models
     3151
     3152> coordset #15-17,21,23
     3153
     3154> view p2 30
     3155
     3156> wait 30
     3157
     3158> ~ribbon #15-17
     3159
     3160> wait 60
     3161
     3162> ribbon #9
     3163
     3164> fly p1
     3165
     3166> ribbon #10
     3167
     3168> ribbon #11
     3169
     3170> ribbon #12
     3171
     3172> ribbon #13
     3173
     3174> ribbon #14
     3175
     3176> show #!18 models
     3177
     3178> show #!19 models
     3179
     3180> show #!20 models
     3181
     3182> show #!4 models
     3183
     3184> color /V yellow green
     3185
     3186> color /U light sea green
     3187
     3188> color /S pale turquoise
     3189
     3190> color /T wheat
     3191
     3192> color /W plum
     3193
     3194> color /A tomato
     3195
     3196> color /B light sky blue
     3197
     3198> color /C medium slate blue
     3199
     3200> color /D medium orchid
     3201
     3202> color /E orange
     3203
     3204> color /F pink
     3205
     3206> color /G cornflower blue
     3207
     3208> color /H dark sea green
     3209
     3210> color /N deep pink target c
     3211
     3212> color /O gold target c
     3213
     3214> color #1,9-17/H,K,J,G,I,L chocolate
     3215
     3216> color #1,9-17/M,N,O,P,Q,R lime green
     3217
     3218> color #1,9-17/A,B,C,D,E,F olive
     3219
     3220> ~ribbon # *
     3221
     3222> hide #!4,18-21 models
     3223
     3224> ribbon #1
     3225
     3226> fly p1
     3227
     3228> wait 40
     3229
     3230> turn y 2 180
     3231
     3232> wait
     3233
     3234> show #!20 models
     3235
     3236> coordset #20
     3237
     3238> wait 60
     3239
     3240> hide #!20 models
     3241
     3242> ~ribbon # *
     3243
     3244> ribbon #2,15-17,23
     3245
     3246> show #!21 models
     3247
     3248> coordset #15-17,21,23
     3249
     3250> view p2 30
     3251
     3252> wait 30
     3253
     3254> ~ribbon #15-17
     3255
     3256> wait 60
     3257
     3258> ribbon #3
     3259
     3260> morph #2,3 frames 60
     3261
     3262Computed 61 frame morph #24 
     3263
     3264> coordset #24 1,61
     3265
     3266> ~ribbon # *
     3267
     3268> ribbon #24
     3269
     3270> coordset #24
     3271
     3272> wait 60
     3273
     3274> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     3275
     3276——— End of log from Sat Aug 20 21:39:26 2022 ———
     3277
     3278opened ChimeraX session 
     3279
     3280> fly p1
     3281
     3282> fly p2
     3283
     3284> color #3/V/T: 381-463 dark slate blue
     3285
     3286> show #!3 models
     3287
     3288> hide #!24 models
     3289
     3290> show #!24 models
     3291
     3292> color #3/V: 381-463 dark slate blue
     3293
     3294> ribbon #3
     3295
     3296> ~ribbon # *
     3297
     3298> ribbon #3
     3299
     3300> redo
     3301
     3302> color /V yellow green
     3303
     3304> color /U light sea green
     3305
     3306> color /S pale turquoise
     3307
     3308> color /T wheat
     3309
     3310> color /W plum
     3311
     3312> color /A tomato
     3313
     3314> color /B light sky blue
     3315
     3316> color /C medium slate blue
     3317
     3318> color /D medium orchid
     3319
     3320> color /E orange
     3321
     3322> color /F pink
     3323
     3324> color /G cornflower blue
     3325
     3326> color /H dark sea green
     3327
     3328> color /N deep pink target c
     3329
     3330> color /O gold target c
     3331
     3332> color #3/V,T: 381-463 dark slate blue
     3333
     3334> ribbon #24
     3335
     3336> color #3,24/V,T: 381-463 dark slate blue
     3337
     3338> hide #!3 models
     3339
     3340> show #!3 models
     3341
     3342> ~ribbon # *
     3343
     3344> ribbon #3
     3345
     3346> color #3,24/V,T: 381-463 dark slate blue
     3347
     3348> color #3,24/V,T: 464-572 dark goldenrod
     3349
     3350> color #3,24/V,T: 573-679 cadet blue
     3351
     3352> color #3,24/V,T: 680-768 dodger blue
     3353
     3354> wait 60
     3355
     3356> ~ribbon #3
     3357
     3358> ribbon #24
     3359
     3360> coordset #24
     3361
     3362> wait 60
     3363
     3364> save D:/CryoEM/KCRI/PAPER/9_movies/CSN/CSN_movie_0819.cxs
     3365
     3366——— End of log from Sat Aug 20 21:43:34 2022 ———
     3367
     3368opened ChimeraX session 
     3369
     3370> color /V yellow green
     3371
     3372> color /U light sea green
     3373
     3374> color /S pale turquoise
     3375
     3376> color /T wheat
     3377
     3378> color /W plum
     3379
     3380> color /A tomato
     3381
     3382> color /B light sky blue
     3383
     3384> color /C medium slate blue
     3385
     3386> color /D medium orchid
     3387
     3388> color /E orange
     3389
     3390> color /F pink
     3391
     3392> color /G cornflower blue
     3393
     3394> color /H dark sea green
     3395
     3396> color /N deep pink target c
     3397
     3398> color /O gold target c
     3399
     3400> ~ribbon # *
     3401
     3402> ribbon #3
     3403
     3404> color #3,24/V,T: 381-463 dark slate blue
     3405
     3406> color #3,24/V,T: 464-572 dark goldenrod
     3407
     3408> color #3,24/V,T: 573-679 cadet blue
     3409
     3410> color #3,24/V,T: 680-768 dodger blue
     3411
     3412> wait 60
     3413
     3414> ~ribbon #3
     3415
     3416> ribbon #24
     3417
     3418> coordset #24
     3419
     3420> wait 60
     3421
     3422> close #24
     3423
     3424> morph #2,3 frames 60 warp true
     3425
     3426Expected a keyword 
     3427
     3428> morph #2,3 frames 60 wrap true
     3429
     3430Computed 121 frame morph #24 
     3431
     3432> coordset #24 1,121
     3433
     3434> ~ribbon # *
     3435
     3436> ribbon #2
     3437
     3438> color #2,3,24/V,T: 381-463 dark slate blue
     3439
     3440> color #2,3,24/V,T: 464-572 dark goldenrod
     3441
     3442> color #2,3,24/V,T: 573-679 cadet blue
     3443
     3444> color #2,3,24/V,T: 680-768 dodger blue
     3445
     3446> wait 60
     3447
     3448> ~ribbon #2
     3449
     3450> ribbon #24
     3451
     3452> coordset #24
     3453
     3454> wait 120
     3455
     3456> coordset #24
     3457
     3458> wait 120
     3459
     3460> close #24
     3461
     3462> morph #2,3 frames 60
     3463
     3464Computed 61 frame morph #24 
     3465
     3466> coordset #24 1,61
     3467
     3468> ~ribbon # *
     3469
     3470> ribbon #2
     3471
     3472> color #2,3,24/V,T: 381-463 dark slate blue
     3473
     3474> color #2,3,24/V,T: 464-572 dark goldenrod
     3475
     3476> color #2,3,24/V,T: 573-679 cadet blue
     3477
     3478> color #2,3,24/V,T: 680-768 dodger blue
     3479
     3480> wait 60
     3481
     3482> ~ribbon #2
     3483
     3484> ribbon #24
     3485
     3486> coordset #24 bounce true
     3487
     3488> wait 120
     3489
     3490> coordset #24
     3491
     3492> wait 60
     3493
     3494> color /V yellow green
     3495
     3496> color /U light sea green
     3497
     3498> color /S pale turquoise
     3499
     3500> color /T wheat
     3501
     3502> color /W plum
     3503
     3504> color /A tomato
     3505
     3506> color /B light sky blue
     3507
     3508> color /C medium slate blue
     3509
     3510> color /D medium orchid
     3511
     3512> color /E orange
     3513
     3514> color /F pink
     3515
     3516> color /G cornflower blue
     3517
     3518> color /H dark sea green
     3519
     3520> color /N deep pink target c
     3521
     3522> color /O gold target c
     3523
     3524> color #1,9-17/H,K,J,G,I,L chocolate
     3525
     3526> color #1,9-17/M,N,O,P,Q,R lime green
     3527
     3528> color #1,9-17/A,B,C,D,E,F olive
     3529
     3530> windowsize 640 480
     3531
     3532> ~ribbon # *
     3533
     3534> hide #!4,18-21 models
     3535
     3536> ribbon #1
     3537
     3538> fly p1
     3539
     3540> wait 40
     3541
     3542> turn y 2 180
     3543
     3544> wait
     3545
     3546> show #!20 models
     3547
     3548> coordset #20
     3549
     3550> wait 60
     3551
     3552> hide #!20 models
     3553
     3554> ~ribbon # *
     3555
     3556> ribbon #2,15-17,23
     3557
     3558> show #!21 models
     3559
     3560> coordset #15-17,21,23
     3561
     3562> view p2 30
     3563
     3564> wait 30
     3565
     3566> ~ribbon #15-17
     3567
     3568> wait 60
     3569
     3570> ~ribbon # *
     3571
     3572> ribbon #2
     3573
     3574> color #2,3,24/V,T: 381-463 dark slate blue
     3575
     3576> color #2,3,24/V,T: 464-572 dark goldenrod
     3577
     3578> color #2,3,24/V,T: 573-679 cadet blue
     3579
     3580> color #2,3,24/V,T: 680-768 dodger blue
     3581
     3582> wait 60
     3583
     3584> ~ribbon #2
     3585
     3586> ribbon #24
     3587
     3588> coordset #24 bounce true
     3589
     3590> wait 120
     3591
     3592> coordset #24
     3593
     3594> wait 60
     3595
     3596> ~ribbon # *
     3597
     3598> hide #!4,18-21 models
     3599
     3600> ribbon #5
     3601
     3602> view name p3
     3603
     3604> roll y 1 360
     3605
     3606> color
     3607
     3608> color # * white
     3609
     3610> ribbon #6
     3611
     3612> view name p4
     3613
     3614> fly p3
     3615
     3616> view p4 60
     3617
     3618> combine #3 name N8~KCR-dimer-out
     3619
     3620> select #25
     3621
     362222404 atoms, 22842 bonds, 6 pseudobonds, 2750 residues, 2 models selected 
     3623
     3624> ribbon #25
     3625
     3626> ui mousemode right "translate selected atoms"
     3627
     3628> fly p4
     3629
     3630> morph #25,3 frames 60
     3631
     3632Computed 61 frame morph #26 
     3633
     3634> coordset #26 1,61
     3635
     3636> fly p3
     3637
     3638> ~ribbon # *
     3639
     3640[Repeated 1 time(s)]
     3641
     3642> hide #!4,18-21 models
     3643
     3644> ribbon #5
     3645
     3646> fly p3
     3647
     3648> roll y 2 180
     3649
     3650> wait
     3651
     3652> wait 60
     3653
     3654> color # * white
     3655
     3656> ribbon #26
     3657
     3658> view p4 60
     3659
     3660> coordset #26
     3661
     3662> wait 60
     3663
     3664> view name p5
     3665
     3666> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     3667
     3668[Repeated 1 time(s)]
     3669
     3670> color /B light sky blue
     3671
     3672> color /D medium orchid
     3673
     3674> color /V: 381-463 dark slate blue
     3675
     3676> color /V: 464-572 dark goldenrod
     3677
     3678> color /V: 573-679 cadet blue
     3679
     3680> color /V: 680-768 dodger blue
     3681
     3682> select /B/D /V:381-768
     3683
     368480238 atoms, 81712 bonds, 20 pseudobonds, 9903 residues, 30 models selected 
     3685
     3686> ~ribbon ~sel
     3687
     3688> show #!2 models
     3689
     3690> show #!3 models
     3691
     3692> show #!4 models
     3693
     3694> hide #!4 models
     3695
     3696> show #!25 models
     3697
     3698> ~ribbon # *
     3699
     3700> ribbon #3,5
     3701
     3702> select clear
     3703
     3704> select /B/D /V:381-768
     3705
     370680238 atoms, 81712 bonds, 20 pseudobonds, 9903 residues, 30 models selected 
     3707
     3708> ~ribbon ~sel
     3709
     3710> ~select
     3711
     3712Nothing selected 
     3713
     3714> ribbon #3,5
     3715
     3716> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     3717
     3718——— End of log from Sun Aug 21 08:18:24 2022 ———
     3719
     3720opened ChimeraX session 
     3721
     3722> close #6
     3723
     3724> open D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-CSN-removing.pdb
     3725
     3726Chain information for KCR-CSN-removing.pdb #6 
     3727--- 
     3728Chain | Description 
     3729A | No description available 
     3730B | No description available 
     3731C | No description available 
     3732D | No description available 
     3733E | No description available 
     3734F | No description available 
     3735G | No description available 
     3736H | No description available 
     3737S | No description available 
     3738T V | No description available 
     3739U | No description available 
     3740W X | No description available 
     3741 
     3742
     3743> rename #2 KCR-dimer-apo
     3744
     3745> rename #3 N8~KCR-dimer-br
     3746
     3747> rename #3 N8~KCR-dimer-before
     3748
     3749> hide #!1-3,5-17,22-26 atoms
     3750
     3751> show #!1-3,5-17,22-26 cartoons
     3752
     3753> ~ribbon # *
     3754
     3755> ribbon #3,5
     3756
     3757> open D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/N8-1-before-
     3758> removal.pdb
     3759
     3760Summary of feedback from opening
     3761D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/N8-1-before-removal.pdb 
     3762--- 
     3763warnings | Start residue of secondary structure not found: HELIX 1 1 PRO V 686
     3764SER V 713 1 28 
     3765Start residue of secondary structure not found: HELIX 2 2 VAL V 721 GLN V 728
     37661 8 
     3767Start residue of secondary structure not found: HELIX 3 3 PRO V 738 ILE V 745
     37681 8 
     3769Start residue of secondary structure not found: HELIX 4 4 GLY V 747 GLU V 750
     37701 4 
     3771 
     3772Chain information for N8-1-before-removal.pdb #27 
     3773--- 
     3774Chain | Description 
     3775N | No description available 
     3776 
     3777
     3778> color /N deep pink target c
     3779
     3780> open D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/N8-1-removing.pdb
     3781
     3782Summary of feedback from opening
     3783D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/N8-1-removing.pdb 
     3784--- 
     3785warnings | Start residue of secondary structure not found: HELIX 1 1 LEU A 84
     3786SER A 90 1 7 
     3787Start residue of secondary structure not found: HELIX 2 2 LEU A 94 HIS A 106 1
     378813 
     3789Start residue of secondary structure not found: HELIX 3 3 ARG A 111 VAL A 122
     37901 12 
     3791Start residue of secondary structure not found: HELIX 4 4 ASP A 129 GLN A 146
     37921 18 
     3793Start residue of secondary structure not found: HELIX 5 5 THR A 164 ASN A 191
     37941 28 
     3795308 messages similar to the above omitted 
     3796Cannot find LINK/SSBOND residue CYS (94 ) 
     3797Cannot find LINK/SSBOND residue HIS (82 ) 
     3798Cannot find LINK/SSBOND residue CYS (83 ) 
     3799Cannot find LINK/SSBOND residue CYS (68 ) 
     3800Cannot find LINK/SSBOND residue HIS (80 ) 
     380117 messages similar to the above omitted 
     3802 
     3803Chain information for N8-1-removing.pdb #28 
     3804--- 
     3805Chain | Description 
     3806N | No description available 
     3807 
     3808
     3809> color /N deep pink target c
     3810
     3811> open D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-removing.pdb
     3812> D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/CSN-removing.pdb
     3813
     3814Summary of feedback from opening
     3815D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/KCR-removing.pdb 
     3816--- 
     3817warnings | Start residue of secondary structure not found: HELIX 1 1 LEU A 84
     3818SER A 90 1 7 
     3819Start residue of secondary structure not found: HELIX 2 2 LEU A 94 HIS A 106 1
     382013 
     3821Start residue of secondary structure not found: HELIX 3 3 ARG A 111 VAL A 122
     38221 12 
     3823Start residue of secondary structure not found: HELIX 4 4 ASP A 129 GLN A 146
     38241 18 
     3825Start residue of secondary structure not found: HELIX 5 5 THR A 164 ASN A 191
     38261 28 
     3827148 messages similar to the above omitted 
     3828 
     3829Summary of feedback from opening
     3830D:/CryoEM/KCRI/PAPER/9_movies/CSN/movie_models_CSN/CSN-removing.pdb 
     3831--- 
     3832warnings | Start residue of secondary structure not found: HELIX 123 123 ALA S
     383314 GLU S 26 1 13 
     3834Start residue of secondary structure not found: HELIX 124 124 LYS S 46 CYS S
     383552 1 7 
     3836Start residue of secondary structure not found: HELIX 125 125 PHE S 56 MET S
     383759 1 4 
     3838Start residue of secondary structure not found: HELIX 126 126 ALA S 79 THR S
     383991 1 13 
     3840Start residue of secondary structure not found: HELIX 127 127 VAL S 101 LEU S
     3841111 1 11 
     3842155 messages similar to the above omitted 
     3843Cannot find LINK/SSBOND residue HIS (80 ) 
     3844Cannot find LINK/SSBOND residue CYS (56 ) 
     3845Cannot find LINK/SSBOND residue CYS (75 ) 
     3846Cannot find LINK/SSBOND residue CYS (75 ) 
     3847Cannot find LINK/SSBOND residue CYS (68 ) 
     384817 messages similar to the above omitted 
     3849 
     3850Chain information for KCR-removing.pdb #29 
     3851--- 
     3852Chain | Description 
     3853S | No description available 
     3854T V | No description available 
     3855U | No description available 
     3856W X | No description available 
     3857 
     3858Chain information for CSN-removing.pdb #30 
     3859--- 
     3860Chain | Description 
     3861A | No description available 
     3862B | No description available 
     3863C | No description available 
     3864D | No description available 
     3865E | No description available 
     3866F | No description available 
     3867G | No description available 
     3868H | No description available 
     3869 
     3870
     3871> hide #27-28#!1-3,5-17,22-26,29-30 atoms
     3872
     3873> show #27-28#!1-3,5-17,22-26,29-30 cartoons
     3874
     3875> ~ribbon # *
     3876
     3877> ribbon #3,5
     3878
     3879> morph #3,29 frames 30
     3880
     3881Computed 31 frame morph #31 
     3882
     3883> coordset #31 1,31
     3884
     3885> close #31
     3886
     3887> morph #3,29 frames 60
     3888
     3889Computed 61 frame morph #31 
     3890
     3891> coordset #31 1,61
     3892
     3893> morph #5,28 frames 60
     3894
     3895models have different number of chains, 8 (Morph - CSN-4d10.pdb #/A,Morph -
     3896CSN-4d10.pdb #/B,Morph - CSN-4d10.pdb #/C,Morph - CSN-4d10.pdb #/D,Morph -
     3897CSN-4d10.pdb #/E,Morph - CSN-4d10.pdb #/F,Morph - CSN-4d10.pdb #/G,Morph -
     3898CSN-4d10.pdb #/H) and 1 (N8-1-removing.pdb #28/N) 
     3899
     3900> morph #5,30 frames 60
     3901
     3902Computed 61 frame morph #32 
     3903
     3904> coordset #32 1,61
     3905
     3906> morph #27,28 frames 60
     3907
     3908Computed 61 frame morph #33 
     3909
     3910> coordset #33 1,61
     3911
     3912> ~ribbon # *
     3913
     3914> ribbon #31-33
     3915
     3916> save D:/CryoEM/KCRI/PAPER/9_movies/CSN/CSN_movie_0819.cxs
     3917
     3918——— End of log from Sun Aug 21 08:34:05 2022 ———
     3919
     3920opened ChimeraX session 
     3921
     3922> fly p5
     3923
     3924> ~ribbon # *
     3925
     3926> ribbon #3,5
     3927
     3928> show #!3 models
     3929
     3930> show #!5 models
     3931
     3932> view name p5
     3933
     3934> ~ribbon # *
     3935
     3936> ribbon #31-33
     3937
     3938> color /B light sky blue
     3939
     3940> color /D medium orchid
     3941
     3942> color /V: 381-463 dark slate blue
     3943
     3944> color /V: 464-572 dark goldenrod
     3945
     3946> color /V: 573-679 cadet blue
     3947
     3948> color /V: 680-768 dodger blue
     3949
     3950> select /B/D /V:381-768
     3951
     395299374 atoms, 101164 bonds, 23 pseudobonds, 12266 residues, 37 models selected 
     3953
     3954> ~ribbon ~sel
     3955
     3956> ~select
     3957
     3958Nothing selected 
     3959
     3960> wait 60
     3961
     3962> coordset #31,33 bounce true
     3963
     3964> wait 120
     3965
     3966> coordset #31,33 wait 60;
     3967
     3968Expected a keyword 
     3969
     3970> ~ribbon # *
     3971
     3972> ribbon #31-33
     3973
     3974> view p5 60
     3975
     3976> color /B light sky blue
     3977
     3978> color /D medium orchid
     3979
     3980> color /V: 381-463 dark slate blue
     3981
     3982> color /V: 464-572 dark goldenrod
     3983
     3984> color /V: 573-679 cadet blue
     3985
     3986> color /V: 680-768 dodger blue
     3987
     3988> select /B/D/N /V:381-768
     3989
     3990122358 atoms, 124616 bonds, 31 pseudobonds, 15122 residues, 51 models selected 
     3991
     3992> ~ribbon ~sel
     3993
     3994> ~select
     3995
     3996Nothing selected 
     3997
     3998> wait 60
     3999
     4000> coordset #31-33 bounce true
     4001
     4002> wait 120
     4003
     4004> coordset #31,33
     4005
     4006> wait 60
     4007
     4008> color /N red
     4009
     4010> color /N deep pink target c
     4011
     4012> show #!4 models
     4013
     4014> hide #!4 models
     4015
     4016> show #!4 models
     4017
     4018> hide #!4 models
     4019
     4020> ~ribbon # *
     4021
     4022> ribbon #31-33
     4023
     4024> view p5 60
     4025
     4026> color /B light sky blue
     4027
     4028> color /D medium orchid
     4029
     4030> color /V: 381-463 dark slate blue
     4031
     4032> color /V: 464-572 dark goldenrod
     4033
     4034> color /V: 573-679 cadet blue
     4035
     4036> color /V: 680-768 dodger blue
     4037
     4038> select /B/D/N /V:381-768
     4039
     4040122358 atoms, 124616 bonds, 31 pseudobonds, 15122 residues, 51 models selected 
     4041
     4042> ~ribbon ~sel
     4043
     4044> ~select
     4045
     4046Nothing selected 
     4047
     4048> wait 60
     4049
     4050> coordset #31-33 bounce true
     4051
     4052> wait 120
     4053
     4054> coordset #31,33
     4055
     4056> wait 60
     4057
     4058> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     4059
     4060> open /home/zgchen/data/KCRI/movie/CSN/N8_script.cxc
     4061
     4062> color /V yellow green
     4063
     4064> color /U light sea green
     4065
     4066> color /S pale turquoise
     4067
     4068> color /T wheat
     4069
     4070> color /W plum
     4071
     4072> color /A tomato
     4073
     4074> color /B light sky blue
     4075
     4076> color /C medium slate blue
     4077
     4078> color /D medium orchid
     4079
     4080> color /E orange
     4081
     4082> color /F pink
     4083
     4084> color /G cornflower blue
     4085
     4086> color /H dark sea green
     4087
     4088> color /N deep pink target c
     4089
     4090> color /O gold target c
     4091
     4092> color #1,9-17/H,K,J,G,I,L chocolate
     4093
     4094> color #1,9-17/M,N,O,P,Q,R lime green
     4095
     4096> color #1,9-17/A,B,C,D,E,F olive
     4097
     4098> windowsize 640 480
     4099
     4100> ~ribbon # *
     4101
     4102> hide #!4,18-21 models
     4103
     4104> ribbon #1
     4105
     4106> fly p1
     4107
     4108> wait 40
     4109
     4110> turn y 2 180
     4111
     4112> wait
     4113
     4114> show #!20 models
     4115
     4116> coordset #20
     4117
     4118> wait 60
     4119
     4120> hide #!20 models
     4121
     4122> ~ribbon # *
     4123
     4124> ribbon #2,15-17,23
     4125
     4126> show #!21 models
     4127
     4128> coordset #15-17,21,23
     4129
     4130> view p2 30
     4131
     4132> wait 30
     4133
     4134> ~ribbon #15-17
     4135
     4136> wait 60
     4137
     4138> ~ribbon # *
     4139
     4140> ribbon #2
     4141
     4142> wait 30
     4143
     4144> color #2,3,24/V,T: 381-463 dark slate blue
     4145
     4146> color #2,3,24/V,T: 464-572 dark goldenrod
     4147
     4148> color #2,3,24/V,T: 573-679 cadet blue
     4149
     4150> color #2,3,24/V,T: 680-768 dodger blue
     4151
     4152> wait 60
     4153
     4154> ~ribbon #2
     4155
     4156> ribbon #24
     4157
     4158> coordset #24 bounce true
     4159
     4160> wait 120
     4161
     4162> coordset #24
     4163
     4164> wait 60
     4165
     4166executed N8_script.cxc 
     4167
     4168> close #23
     4169
     4170> morph #22,2 frames 30
     4171
     4172Computed 31 frame morph #23 
     4173
     4174> coordset #23 1,31
     4175
     4176> open /home/zgchen/data/KCRI/movie/CSN/N8_script.cxc
     4177
     4178> color /V yellow green
     4179
     4180> color /U light sea green
     4181
     4182> color /S pale turquoise
     4183
     4184> color /T wheat
     4185
     4186> color /W plum
     4187
     4188> color /A tomato
     4189
     4190> color /B light sky blue
     4191
     4192> color /C medium slate blue
     4193
     4194> color /D medium orchid
     4195
     4196> color /E orange
     4197
     4198> color /F pink
     4199
     4200> color /G cornflower blue
     4201
     4202> color /H dark sea green
     4203
     4204> color /N deep pink target c
     4205
     4206> color /O gold target c
     4207
     4208> color #1,9-17/H,K,J,G,I,L chocolate
     4209
     4210> color #1,9-17/M,N,O,P,Q,R lime green
     4211
     4212> color #1,9-17/A,B,C,D,E,F olive
     4213
     4214> windowsize 640 480
     4215
     4216> ~ribbon # *
     4217
     4218> hide #!4,18-21 models
     4219
     4220> ribbon #1
     4221
     4222> fly p1
     4223
     4224> wait 40
     4225
     4226> turn y 2 180
     4227
     4228> wait
     4229
     4230> show #!20 models
     4231
     4232> coordset #20
     4233
     4234> wait 60
     4235
     4236> hide #!20 models
     4237
     4238> ~ribbon # *
     4239
     4240> ribbon #2,15-17,23
     4241
     4242> show #!21 models
     4243
     4244> coordset #15-17,21,23
     4245
     4246> view p2 30
     4247
     4248> wait 30
     4249
     4250> ~ribbon #15-17
     4251
     4252> wait 60
     4253
     4254> ~ribbon # *
     4255
     4256> ribbon #2
     4257
     4258> wait 30
     4259
     4260> color #2,3,24/V,T: 381-463 dark slate blue
     4261
     4262> color #2,3,24/V,T: 464-572 dark goldenrod
     4263
     4264> color #2,3,24/V,T: 573-679 cadet blue
     4265
     4266> color #2,3,24/V,T: 680-768 dodger blue
     4267
     4268> wait 60
     4269
     4270> ~ribbon #2
     4271
     4272> ribbon #24
     4273
     4274> coordset #24 bounce true
     4275
     4276> wait 120
     4277
     4278> coordset #24
     4279
     4280> wait 60
     4281
     4282executed N8_script.cxc 
     4283
     4284> show #!2 models
     4285
     4286> select surface
     4287
     4288Expected an objects specifier or a keyword 
     4289
     4290> show #!4 models
     4291
     4292> transparency #4.1-2 70
     4293
     4294> hide #!4 models
     4295
     4296> transparency #21.1-2 70
     4297
     4298> select clear
     4299
     4300> show #!20 models
     4301
     4302> hide #!21 models
     4303
     4304> show #!21 models
     4305
     4306> transparency #20.1-2 70
     4307
     4308> select clear
     4309
     4310> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     4311
     4312> open /home/zgchen/data/KCRI/movie/CSN/N8_script.cxc
     4313
     4314> color /V yellow green
     4315
     4316> color /U light sea green
     4317
     4318> color /S pale turquoise
     4319
     4320> color /T wheat
     4321
     4322> color /W plum
     4323
     4324> color /A tomato
     4325
     4326> color /B light sky blue
     4327
     4328> color /C medium slate blue
     4329
     4330> color /D medium orchid
     4331
     4332> color /E orange
     4333
     4334> color /F pink
     4335
     4336> color /G cornflower blue
     4337
     4338> color /H dark sea green
     4339
     4340> color /N deep pink target c
     4341
     4342> color /O gold target c
     4343
     4344> color #1,9-17/H,K,J,G,I,L chocolate
     4345
     4346> color #1,9-17/M,N,O,P,Q,R lime green
     4347
     4348> color #1,9-17/A,B,C,D,E,F olive
     4349
     4350> windowsize 640 480
     4351
     4352> ~ribbon # *
     4353
     4354> hide #!4,18-21 models
     4355
     4356> ribbon #1
     4357
     4358> fly p1
     4359
     4360> wait 40
     4361
     4362> turn y 2 180
     4363
     4364> wait
     4365
     4366> show #!20 models
     4367
     4368> coordset #20
     4369
     4370> wait 60
     4371
     4372> hide #!20 models
     4373
     4374> ~ribbon # *
     4375
     4376> ribbon #2,15-17,23
     4377
     4378> show #!21 models
     4379
     4380> coordset #15-17,21,23
     4381
     4382> view p2 30
     4383
     4384> wait 30
     4385
     4386> ~ribbon #15-17
     4387
     4388> wait 60
     4389
     4390> ~ribbon # *
     4391
     4392> ribbon #2
     4393
     4394> wait 30
     4395
     4396> color #2,3,24/V,T: 381-463 dark slate blue
     4397
     4398> color #2,3,24/V,T: 464-572 dark goldenrod
     4399
     4400> color #2,3,24/V,T: 573-679 cadet blue
     4401
     4402> color #2,3,24/V,T: 680-768 dodger blue
     4403
     4404> wait 60
     4405
     4406> ~ribbon #2
     4407
     4408> ribbon #24
     4409
     4410> coordset #24 bounce true
     4411
     4412> wait 120
     4413
     4414> coordset #24
     4415
     4416> wait 60
     4417
     4418executed N8_script.cxc 
     4419
     4420> coordset #23
     4421
     4422> open /home/zgchen/data/KCRI/movie/CSN/N8_script.cxc
     4423
     4424> color /V yellow green
     4425
     4426> color /U light sea green
     4427
     4428> color /S pale turquoise
     4429
     4430> color /T wheat
     4431
     4432> color /W plum
     4433
     4434> color /A tomato
     4435
     4436> color /B light sky blue
     4437
     4438> color /C medium slate blue
     4439
     4440> color /D medium orchid
     4441
     4442> color /E orange
     4443
     4444> color /F pink
     4445
     4446> color /G cornflower blue
     4447
     4448> color /H dark sea green
     4449
     4450> color /N deep pink target c
     4451
     4452> color /O gold target c
     4453
     4454> color #1,9-17/H,K,J,G,I,L chocolate
     4455
     4456> color #1,9-17/M,N,O,P,Q,R lime green
     4457
     4458> color #1,9-17/A,B,C,D,E,F olive
     4459
     4460> windowsize 640 480
     4461
     4462> ~ribbon # *
     4463
     4464> hide #!4,18-21 models
     4465
     4466> ribbon #1
     4467
     4468> fly p1
     4469
     4470> wait 40
     4471
     4472> turn y 2 180
     4473
     4474> wait
     4475
     4476> show #!20 models
     4477
     4478> coordset #20
     4479
     4480> wait 60
     4481
     4482> hide #!20 models
     4483
     4484> ~ribbon # *
     4485
     4486> ribbon #15-17,23
     4487
     4488> show #!21 models
     4489
     4490> coordset #15-17,21,23
     4491
     4492> view p2 30
     4493
     4494> wait 30
     4495
     4496> ~ribbon #15-17
     4497
     4498> wait 60
     4499
     4500> ~ribbon # *
     4501
     4502> ribbon #2
     4503
     4504> wait 30
     4505
     4506> color #2,3,24/V,T: 381-463 dark slate blue
     4507
     4508> color #2,3,24/V,T: 464-572 dark goldenrod
     4509
     4510> color #2,3,24/V,T: 573-679 cadet blue
     4511
     4512> color #2,3,24/V,T: 680-768 dodger blue
     4513
     4514> wait 60
     4515
     4516> ~ribbon #2
     4517
     4518> ribbon #24
     4519
     4520> coordset #24 bounce true
     4521
     4522> wait 120
     4523
     4524> coordset #24
     4525
     4526> wait 60
     4527
     4528executed N8_script.cxc 
     4529
     4530> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     4531
     4532> fly p5
     4533
     4534> ~ribbon # *
     4535
     4536> hide #!4,18-21 models
     4537
     4538> ribbon #5
     4539
     4540> fly p3
     4541
     4542> roll y 2 180
     4543
     4544> wait
     4545
     4546> wait 60
     4547
     4548> color # * white
     4549
     4550> ribbon #26
     4551
     4552> view p4 60
     4553
     4554> coordset #26
     4555
     4556> wait 60
     4557
     4558> ~ribbon # *
     4559
     4560> ribbon #31-33
     4561
     4562> view p5 60
     4563
     4564> color /B light sky blue
     4565
     4566> color /D medium orchid
     4567
     4568> color /V: 381-463 dark slate blue
     4569
     4570> color /V: 464-572 dark goldenrod
     4571
     4572> color /V: 573-679 cadet blue
     4573
     4574> color /V: 680-768 dodger blue
     4575
     4576> select /B/D/N /V:381-768
     4577
     4578122358 atoms, 124616 bonds, 31 pseudobonds, 15122 residues, 51 models selected 
     4579
     4580> ~ribbon ~sel
     4581
     4582> ~select
     4583
     4584Nothing selected 
     4585
     4586> wait 60
     4587
     4588> coordset #31-33 bounce true
     4589
     4590> wait 120
     4591
     4592> coordset #31-33
     4593
     4594> wait 60
     4595
     4596> ~ribbon # *
     4597
     4598> hide #!4,18-21 models
     4599
     4600> ribbon #5
     4601
     4602> fly p3
     4603
     4604> wait 60
     4605
     4606> roll y 2 180
     4607
     4608> wait
     4609
     4610> wait 60
     4611
     4612> color # * white
     4613
     4614> ribbon #26
     4615
     4616> view p4 60
     4617
     4618> coordset #26
     4619
     4620> wait 60
     4621
     4622> ~ribbon # *
     4623
     4624> ribbon #31-33
     4625
     4626> view p5 60
     4627
     4628> wait 60
     4629
     4630> color /B:415-443 light sky blue
     4631
     4632> color /D:363-406 medium orchid
     4633
     4634> color /V: 381-463 dark slate blue
     4635
     4636> color /V: 464-572 dark goldenrod
     4637
     4638> color /V: 573-679 cadet blue
     4639
     4640> color /V: 680-768 dodger blue
     4641
     4642> color /N deep pink target c
     4643
     4644> select /N /B:415-443 /D:363-406 /V:381-768
     4645
     464665738 atoms, 66914 bonds, 21 pseudobonds, 8138 residues, 46 models selected 
     4647
     4648> ~ribbon ~sel
     4649
     4650> ~select
     4651
     4652Nothing selected 
     4653
     4654> wait 60
     4655
     4656> coordset #31-33 bounce true
     4657
     4658> wait 120
     4659
     4660> coordset #31-33
     4661
     4662> wait 60
     4663
     4664> ~ribbon # *
     4665
     4666> hide #!4,18-21 models
     4667
     4668> ribbon #5
     4669
     4670> fly p3
     4671
     4672> wait 60
     4673
     4674> roll y 2 180
     4675
     4676> wait
     4677
     4678> wait 60
     4679
     4680> color # * white
     4681
     4682> ribbon #26
     4683
     4684> view p4 60
     4685
     4686> coordset #26
     4687
     4688> wait 60
     4689
     4690> ~ribbon # *
     4691
     4692> ribbon #31-33
     4693
     4694> view p5 60
     4695
     4696> wait 60
     4697
     4698> color /B:1-414 light sky blue
     4699
     4700> color /D:1-362 medium orchid
     4701
     4702> color /V: 381-463 dark slate blue
     4703
     4704> color /V: 464-572 dark goldenrod
     4705
     4706> color /V: 573-679 cadet blue
     4707
     4708> color /V: 680-768 dodger blue
     4709
     4710> color /N deep pink target c
     4711
     4712> select /N /B:1-414 /D:1-362 /V:381-768
     4713
     4714113428 atoms, 115482 bonds, 27 pseudobonds, 14008 residues, 51 models selected 
     4715
     4716> ~ribbon ~sel
     4717
     4718> ~select
     4719
     4720Nothing selected 
     4721
     4722> wait 60
     4723
     4724> coordset #31-33 bounce true
     4725
     4726> wait 120
     4727
     4728> coordset #31-33
     4729
     4730> wait 60
     4731
     4732> show #27 models
     4733
     4734> show #28 models
     4735
     4736> show #!29 models
     4737
     4738> show #!30 models
     4739
     4740> ~ribbon # *
     4741
     4742> hide #!4,18-21 models
     4743
     4744> ribbon #5
     4745
     4746> fly p3
     4747
     4748> wait 60
     4749
     4750> roll y 2 180
     4751
     4752> wait
     4753
     4754> wait 60
     4755
     4756> color # * white
     4757
     4758> ribbon #26
     4759
     4760> view p4 60
     4761
     4762> coordset #26
     4763
     4764> wait 60
     4765
     4766> ~ribbon # *
     4767
     4768> ribbon #3,5,27
     4769
     4770> view p5 60
     4771
     4772> wait 60
     4773
     4774> color /B:1-414 light sky blue
     4775
     4776> color /D:1-362 medium orchid
     4777
     4778> color /V: 381-463 dark slate blue
     4779
     4780> color /V: 464-572 dark goldenrod
     4781
     4782> color /V: 573-679 cadet blue
     4783
     4784> color /V: 680-768 dodger blue
     4785
     4786> color /N deep pink target c
     4787
     4788> select /N /B:1-414 /D:1-362 /V:381-768
     4789
     4790113428 atoms, 115482 bonds, 27 pseudobonds, 14008 residues, 51 models selected 
     4791
     4792> ~ribbon ~sel
     4793
     4794> ~select
     4795
     4796Nothing selected 
     4797
     4798> wait 60
     4799
     4800> ~ribbon # *
     4801
     4802> ribbon #31-33
     4803
     4804> coordset #31-33 bounce true
     4805
     4806> wait 120
     4807
     4808> coordset #31-33
     4809
     4810> wait 60
     4811
     4812> ~ribbon # *
     4813
     4814> hide #!4,18-21 models
     4815
     4816> ribbon #5
     4817
     4818> fly p3
     4819
     4820> wait 60
     4821
     4822> roll y 2 180
     4823
     4824> wait
     4825
     4826> wait 60
     4827
     4828> color # * white
     4829
     4830> ribbon #26
     4831
     4832> view p4 60
     4833
     4834> coordset #26
     4835
     4836> wait 60
     4837
     4838> ~ribbon # *
     4839
     4840> ribbon #3,5,27
     4841
     4842> view p5 60
     4843
     4844> wait 60
     4845
     4846> color /B:1-414 light sky blue
     4847
     4848> color /D:1-362 medium orchid
     4849
     4850> color /V: 381-463 dark slate blue
     4851
     4852> color /V: 464-572 dark goldenrod
     4853
     4854> color /V: 573-679 cadet blue
     4855
     4856> color /V: 680-768 dodger blue
     4857
     4858> color /N deep pink target c
     4859
     4860> select /N /B:1-414 /D:1-362 /V:381-768
     4861
     4862113428 atoms, 115482 bonds, 27 pseudobonds, 14008 residues, 51 models selected 
     4863
     4864> ~ribbon ~sel
     4865
     4866> ~select
     4867
     4868Nothing selected 
     4869
     4870> wait 60
     4871
     4872> ~ribbon # *
     4873
     4874> ribbon #31-33
     4875
     4876> select /N /B:1-414 /D:1-362 /V:381-768
     4877
     4878113428 atoms, 115482 bonds, 27 pseudobonds, 14008 residues, 51 models selected 
     4879
     4880> ~ribbon ~sel
     4881
     4882> ~select
     4883
     4884Nothing selected 
     4885
     4886> coordset #31-33 bounce true
     4887
     4888> wait 120
     4889
     4890> coordset #31-33
     4891
     4892> wait 60
     4893
     4894> ~ribbon # *
     4895
     4896> hide #!4,18-21 models
     4897
     4898> ribbon #5
     4899
     4900> fly p3
     4901
     4902> wait 60
     4903
     4904> roll y 2 180
     4905
     4906> wait
     4907
     4908> wait 60
     4909
     4910> color # * white
     4911
     4912> ribbon #26
     4913
     4914> view p4 60
     4915
     4916> coordset #26
     4917
     4918> wait 60
     4919
     4920> ~ribbon # *
     4921
     4922> ribbon #3,5,27
     4923
     4924> view p5 60
     4925
     4926> wait 60
     4927
     4928> color /B:1-414 light sky blue
     4929
     4930> color /D:1-362 medium orchid
     4931
     4932> color /V: 381-463 dark slate blue
     4933
     4934> color /V: 464-572 dark goldenrod
     4935
     4936> color /V: 573-679 cadet blue
     4937
     4938> color /V: 680-768 dodger blue
     4939
     4940> color /W plum
     4941
     4942> color /N deep pink target c
     4943
     4944> select /N/W /B:1-414 /D:1-362 /V:381-768
     4945
     4946123039 atoms, 125349 bonds, 82 pseudobonds, 15195 residues, 56 models selected 
     4947
     4948> ~ribbon ~sel
     4949
     4950> ~select
     4951
     4952Nothing selected 
     4953
     4954> wait 60
     4955
     4956> ~ribbon # *
     4957
     4958> ribbon #31-33
     4959
     4960> select /N /B:1-414 /D:1-362 /V:381-768
     4961
     4962113428 atoms, 115482 bonds, 27 pseudobonds, 14008 residues, 51 models selected 
     4963
     4964> ~ribbon ~sel
     4965
     4966> ~select
     4967
     4968Nothing selected 
     4969
     4970> coordset #31-33 bounce true
     4971
     4972> wait 120
     4973
     4974> coordset #31-33
     4975
     4976> wait 60
     4977
     4978> ~ribbon # *
     4979
     4980> ribbon #31-33
     4981
     4982> ~ribbon # *
     4983
     4984> hide #!4,18-21 models
     4985
     4986> ribbon #5
     4987
     4988> fly p3
     4989
     4990> wait 60
     4991
     4992> roll y 2 180
     4993
     4994> wait
     4995
     4996> wait 60
     4997
     4998> color # * white
     4999
     5000> ribbon #26
     5001
     5002> view p4 60
     5003
     5004> coordset #26
     5005
     5006> wait 60
     5007
     5008> ~ribbon # *
     5009
     5010> ribbon #3,5,27
     5011
     5012> view p5 60
     5013
     5014> wait 60
     5015
     5016> color /B:1-414 light sky blue
     5017
     5018> color /D:1-362 medium orchid
     5019
     5020> color /V: 381-463 dark slate blue
     5021
     5022> color /V: 464-572 dark goldenrod
     5023
     5024> color /V: 573-679 cadet blue
     5025
     5026> color /V: 680-768 dodger blue
     5027
     5028> color /X plum
     5029
     5030> color /N deep pink target c
     5031
     5032> select /N/X /B:1-414 /D:1-362 /V:381-768
     5033
     5034123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5035
     5036> ~ribbon ~sel
     5037
     5038> ~select
     5039
     5040Nothing selected 
     5041
     5042> wait 60
     5043
     5044> ~ribbon # *
     5045
     5046> ribbon #31-33
     5047
     5048> select /N/X /B:1-414 /D:1-362 /V:381-768
     5049
     5050123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5051
     5052> ~ribbon ~sel
     5053
     5054> ~select
     5055
     5056Nothing selected 
     5057
     5058> coordset #31-33 bounce true
     5059
     5060> wait 120
     5061
     5062> coordset #31-33
     5063
     5064> wait 60
     5065
     5066> coordset #31-33 bounce true
     5067
     5068> wait 120
     5069
     5070> coordset #31-33
     5071
     5072> wait 60
     5073
     5074> FLY P5
     5075
     5076Unknown command: FLY P5 
     5077
     5078> fly p5
     5079
     5080> turn y 70
     5081
     5082> turn y -70
     5083
     5084> turn y -60
     5085
     5086> turn y -50
     5087
     5088> coordset #31-33 bounce true
     5089
     5090> wait 120
     5091
     5092> coordset #31-33
     5093
     5094> wait 60
     5095
     5096> view name p6
     5097
     5098> fly p5
     5099
     5100> coordset #31-33 bounce true
     5101
     5102> wait 120
     5103
     5104> view p6 60
     5105
     5106> wait 60
     5107
     5108> coordset #31-33 bounce true
     5109
     5110> wait 120
     5111
     5112> coordset #31-33
     5113
     5114> wait 60
     5115
     5116> fly p2
     5117
     5118> ~ribbon # *
     5119
     5120> ribbon #23
     5121
     5122> ribbon #23,2
     5123
     5124> coordset #23 computeSs
     5125
     5126Missing "computeSs" keyword's argument 
     5127
     5128> coordset #23 computeSs ture
     5129
     5130Invalid "computeSs" argument: Expected true or false (or 1 or 0) 
     5131
     5132> coordset #23 computeSs true
     5133
     5134> movie record
     5135
     5136> movie encode /home/zgchen/Desktop/movie.mp4 framerate 25.0
     5137
     5138Movie saved to /home/zgchen/Desktop/movie.mp4 
     5139 
     5140
     5141> movie record
     5142
     5143> movie encode /home/zgchen/Desktop/movie.mp4 framerate 25.0
     5144
     5145Error processing trigger "new frame": 
     5146Movie encoding failed because no images were recorded. 
     5147
     5148> hide #!2 models
     5149
     5150> show #!2 models
     5151
     5152> hide #!2 models
     5153
     5154> show #!2 models
     5155
     5156> hide #!23 models
     5157
     5158> show #!23 models
     5159
     5160> coordset #23 computeSs true
     5161
     5162> hide #!2 models
     5163
     5164> coordset #23 computeSs true
     5165
     5166> show #!2 models
     5167
     5168> hide #!2 models
     5169
     5170> show #!2 models
     5171
     5172> hide #!2 models
     5173
     5174> show #!2 models
     5175
     5176> hide #!2 models
     5177
     5178> show #!2 models
     5179
     5180> hide #!2 models
     5181
     5182> show #!2 models
     5183
     5184> hide #!2 models
     5185
     5186> show #!2 models
     5187
     5188> fly p6
     5189
     5190> fly p5
     5191
     5192> fly p6
     5193
     5194> select /N/X /B:1-414 /D:1-362 /V:381-768
     5195
     5196123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5197
     5198> ~ribbon ~sel
     5199
     5200> ~select
     5201
     5202Nothing selected 
     5203
     5204> fly p4
     5205
     5206> select /N/X /B:1-414 /D:1-362 /V:381-768
     5207
     5208123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5209
     5210> ribbon #3,5 ~sel
     5211
     5212> cartoon #3,5 ~sel
     5213
     5214Expected a keyword 
     5215
     5216> select ~sel
     5217
     5218568228 atoms, 579203 bonds, 205 pseudobonds, 70164 residues, 61 models
     5219selected 
     5220
     5221> select /N/X /B:1-414 /D:1-362 /V:381-768
     5222
     5223123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5224
     5225> ~ribbon sel
     5226
     5227> ribbon #3,5
     5228
     5229> select /N/X /B:1-414 /D:1-362 /V:381-768
     5230
     5231123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5232
     5233> ~ribbon sel
     5234
     5235> ribbon #3,5
     5236
     5237> ~select
     5238
     5239Nothing selected 
     5240
     5241> ~ribbon # *
     5242
     5243> ribbon #31-33
     5244
     5245> select /N/X /B:1-414 /D:1-362 /V:381-768
     5246
     5247123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5248
     5249> ~ribbon ~sel
     5250
     5251> ~select
     5252
     5253Nothing selected 
     5254
     5255> ribbon #3,5
     5256
     5257> select #3,5 /N/X /B:1-414 /D:1-362 /V:381-768
     5258
     52599666 atoms, 9832 bonds, 2 pseudobonds, 1192 residues, 4 models selected 
     5260
     5261> ~ribbon sel
     5262
     5263> ~select
     5264
     5265Nothing selected 
     5266
     5267> hide #!3 models
     5268
     5269> show #!3 models
     5270
     5271> ~ribbon # *
     5272
     5273> ribbon #3,5,27
     5274
     5275> view p5 60
     5276
     5277> wait 60
     5278
     5279> color /B:1-414 light sky blue
     5280
     5281> color /D:1-362 medium orchid
     5282
     5283> color /V: 381-463 dark slate blue
     5284
     5285> color /V: 464-572 dark goldenrod
     5286
     5287> color /V: 573-679 cadet blue
     5288
     5289> color /V: 680-768 dodger blue
     5290
     5291> color /X plum
     5292
     5293> color /N deep pink target c
     5294
     5295> select /N/X /B:1-414 /D:1-362 /V:381-768
     5296
     5297123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5298
     5299> ~ribbon ~sel
     5300
     5301> ~select
     5302
     5303Nothing selected 
     5304
     5305> wait 60
     5306
     5307> ~ribbon # *
     5308
     5309> ribbon #31-33
     5310
     5311> select /N/X /B:1-414 /D:1-362 /V:381-768
     5312
     5313123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5314
     5315> ~ribbon ~sel
     5316
     5317> ~select
     5318
     5319Nothing selected 
     5320
     5321> coordset #31-33 bounce true
     5322
     5323> wait 120
     5324
     5325> view p6 60
     5326
     5327> wait 60
     5328
     5329> coordset #31-33 bounce true
     5330
     5331> wait 120
     5332
     5333> coordset #31-33
     5334
     5335> wait 60
     5336
     5337> ribbon #3,5
     5338
     5339> select #3,5 /N/X /B:1-414 /D:1-362 /V:381-768
     5340
     53419666 atoms, 9832 bonds, 2 pseudobonds, 1192 residues, 4 models selected 
     5342
     5343> ~ribbon sel
     5344
     5345> ~select
     5346
     5347Nothing selected 
     5348
     5349> wait 60
     5350
     5351> view p4 60
     5352
     5353> view name p7
     5354
     5355> view p7 60
     5356
     5357> wait 60
     5358
     5359> ~ribbon # *
     5360
     5361> ribbon #31-33
     5362
     5363> select /N/X /E:1-252 /F:1-214 /V:381-768
     5364
     536599881 atoms, 101875 bonds, 63 pseudobonds, 12367 residues, 51 models selected 
     5366
     5367> ~ribbon ~sel
     5368
     5369> ~select
     5370
     5371Nothing selected 
     5372
     5373> wait 60
     5374
     5375> coordset #31-33 bounce true
     5376
     5377> wait 120
     5378
     5379> coordset #31-33
     5380
     5381> wait 60
     5382
     5383> ribbon #3,5
     5384
     5385> select #3,5 /N/X /B:1-414 /D:1-362 /V:381-768
     5386
     53879666 atoms, 9832 bonds, 2 pseudobonds, 1192 residues, 4 models selected 
     5388
     5389> ~ribbon sel
     5390
     5391> ~select
     5392
     5393Nothing selected 
     5394
     5395> wait 60
     5396
     5397> view p4 60
     5398
     5399> color /E:1-252 orange
     5400
     5401> color /F:1-214 pink
     5402
     5403> view p7 60
     5404
     5405> wait 60
     5406
     5407> ~ribbon # *
     5408
     5409> ribbon #31-33
     5410
     5411> select /N/X /E:1-252 /F:1-214 /V:381-768
     5412
     541399881 atoms, 101875 bonds, 63 pseudobonds, 12367 residues, 51 models selected 
     5414
     5415> ~ribbon ~sel
     5416
     5417> ~select
     5418
     5419Nothing selected 
     5420
     5421> wait 60
     5422
     5423> coordset #31-33 bounce true
     5424
     5425> wait 120
     5426
     5427> coordset #31-33
     5428
     5429> wait 60
     5430
     5431> ribbon #3,5
     5432
     5433> select #3,5 /N/X /B:1-414 /D:1-362 /V:381-768
     5434
     54359666 atoms, 9832 bonds, 2 pseudobonds, 1192 residues, 4 models selected 
     5436
     5437> ~ribbon sel
     5438
     5439> ~select
     5440
     5441Nothing selected 
     5442
     5443> wait 60
     5444
     5445> view p4 60
     5446
     5447> view p7 60
     5448
     5449> wait 60
     5450
     5451> color /E:1-252 orange
     5452
     5453> color /F:1-214 pink
     5454
     5455> ~ribbon # *
     5456
     5457> ribbon #31-33
     5458
     5459> select /X /E:1-252 /F:1-214 /V:381-768
     5460
     546176897 atoms, 78423 bonds, 55 pseudobonds, 9511 residues, 37 models selected 
     5462
     5463> ~ribbon ~sel
     5464
     5465> ~select
     5466
     5467Nothing selected 
     5468
     5469> wait 60
     5470
     5471> coordset #31-33 bounce true
     5472
     5473> wait 120
     5474
     5475> coordset #31-33
     5476
     5477> wait 60
     5478
     5479> ribbon #3,5
     5480
     5481> select #3,5 /N/X /B:1-414 /D:1-362 /V:381-768
     5482
     54839666 atoms, 9832 bonds, 2 pseudobonds, 1192 residues, 4 models selected 
     5484
     5485> ~ribbon sel
     5486
     5487> ~select
     5488
     5489Nothing selected 
     5490
     5491> wait 60
     5492
     5493> view p4 60
     5494
     5495> view p7 60
     5496
     5497> wait 60
     5498
     5499> color /E:1-252 orange
     5500
     5501> color /F:1-214 pink
     5502
     5503> ~ribbon # *
     5504
     5505> ribbon #31-33
     5506
     5507> select /X /E:1-252 /F:1-214 /V:381-768
     5508
     550976897 atoms, 78423 bonds, 55 pseudobonds, 9511 residues, 37 models selected 
     5510
     5511> ~ribbon ~sel
     5512
     5513> ~select
     5514
     5515Nothing selected 
     5516
     5517> wait 60
     5518
     5519> coordset #31-33 bounce true
     5520
     5521> wait 120
     5522
     5523> coordset #31-33
     5524
     5525> wait 60
     5526
     5527> ribbon #3,5,28
     5528
     5529> select #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     5530
     553112921 atoms, 13165 bonds, 2 pseudobonds, 1600 residues, 4 models selected 
     5532
     5533> ~ribbon sel
     5534
     5535> ~select
     5536
     5537Nothing selected 
     5538
     5539> wait 60
     5540
     5541> view p4 60
     5542
     5543> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     5544
     5545> ~ribbon # *
     5546
     5547> hide #!4,18-21 models
     5548
     5549> ribbon #5
     5550
     5551> fly p3
     5552
     5553> wait 60
     5554
     5555> roll y 2 180
     5556
     5557> wait
     5558
     5559> wait 60
     5560
     5561> color # * white
     5562
     5563> ribbon #26
     5564
     5565> view p4 60
     5566
     5567> coordset #26
     5568
     5569> wait 60
     5570
     5571> ~ribbon # *
     5572
     5573> ribbon #3,5,27
     5574
     5575> view p5 60
     5576
     5577> wait 60
     5578
     5579> color /B:1-414 light sky blue
     5580
     5581> color /D:1-362 medium orchid
     5582
     5583> color /V: 381-463 dark slate blue
     5584
     5585> color /V: 464-572 dark goldenrod
     5586
     5587> color /V: 573-679 cadet blue
     5588
     5589> color /V: 680-768 dodger blue
     5590
     5591> color /X plum
     5592
     5593> color /N deep pink target c
     5594
     5595> select /N/X /B:1-414 /D:1-362 /V:381-768
     5596
     5597123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5598
     5599> ~ribbon ~sel
     5600
     5601> ~select
     5602
     5603Nothing selected 
     5604
     5605> wait 60
     5606
     5607> ~ribbon # *
     5608
     5609> ribbon #31-33
     5610
     5611> select /N/X /B:1-414 /D:1-362 /V:381-768
     5612
     5613123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5614
     5615> ~ribbon ~sel
     5616
     5617> ~select
     5618
     5619Nothing selected 
     5620
     5621> coordset #31-33 bounce true
     5622
     5623> wait 120
     5624
     5625> view p6 60
     5626
     5627> wait 60
     5628
     5629> coordset #31-33 bounce true
     5630
     5631> wait 120
     5632
     5633> coordset #31-33
     5634
     5635> wait 60
     5636
     5637> ribbon #3,5,28
     5638
     5639> select #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     5640
     564110257 atoms, 10428 bonds, 2 pseudobonds, 1268 residues, 5 models selected 
     5642
     5643> ~ribbon sel
     5644
     5645> ~select
     5646
     5647Nothing selected 
     5648
     5649> wait 60
     5650
     5651> view p4 60
     5652
     5653> view p7 60
     5654
     5655> wait 60
     5656
     5657> color /E:1-252 orange
     5658
     5659> color /F:1-214 pink
     5660
     5661> ~ribbon # *
     5662
     5663> ribbon #31-33
     5664
     5665> select /X /E:1-252 /F:1-214 /V:381-768
     5666
     566776897 atoms, 78423 bonds, 55 pseudobonds, 9511 residues, 37 models selected 
     5668
     5669> ~ribbon ~sel
     5670
     5671> ~select
     5672
     5673Nothing selected 
     5674
     5675> wait 60
     5676
     5677> coordset #31-33 bounce true
     5678
     5679> wait 120
     5680
     5681> coordset #31-33
     5682
     5683> wait 60
     5684
     5685> ribbon #3,5,28
     5686
     5687> select #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     5688
     568912921 atoms, 13165 bonds, 2 pseudobonds, 1600 residues, 4 models selected 
     5690
     5691> ~ribbon sel
     5692
     5693> ~select
     5694
     5695Nothing selected 
     5696
     5697> wait 60
     5698
     5699> view p4 60
     5700
     5701> ribbon #31
     5702
     5703> coordset #31 slidebar on
     5704
     5705Expected a keyword 
     5706
     5707> coordset slider #31
     5708
     5709> coordset slider #32
     5710
     5711> coordset slider #30
     5712
     5713> ribbon #30
     5714
     5715> ~ribbon #30
     5716
     5717> ribbon #5
     5718
     5719> ~ribbon # *
     5720
     5721> ribbon #31-33
     5722
     5723> select /N/X /B:1-414 /D:1-362 /V:381-768
     5724
     5725123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     5726
     5727> ~ribbon ~sel
     5728
     5729> ~select
     5730
     5731Nothing selected 
     5732
     5733> coordset #31-33 bounce true
     5734
     5735> wait 120
     5736
     5737> view p6 60
     5738
     5739> wait 60
     5740
     5741> coordset #31-33 bounce true
     5742
     5743> wait 120
     5744
     5745> coordset #31-33
     5746
     5747> wait 60
     5748
     5749> ribbon #3,5,28
     5750
     5751> select #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     5752
     575310257 atoms, 10428 bonds, 2 pseudobonds, 1268 residues, 5 models selected 
     5754
     5755> ~ribbon sel
     5756
     5757> ~select
     5758
     5759Nothing selected 
     5760
     5761> wait 60
     5762
     5763> view p4 60
     5764
     5765> view p7 60
     5766
     5767> wait 60
     5768
     5769> color /E:1-252 orange
     5770
     5771> color /F:1-214 pink
     5772
     5773> ~ribbon # *
     5774
     5775> ribbon #30 /V:381-768 /X
     5776
     5777> ribbon #31-33 /E:1-252 /F:1-214
     5778
     5779> wait 60
     5780
     5781> coordset #31-33 bounce true
     5782
     5783> wait 120
     5784
     5785> coordset #31-33
     5786
     5787> wait 60
     5788
     5789> ribbon #3,5,28
     5790
     5791> select #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     5792
     579310257 atoms, 10428 bonds, 2 pseudobonds, 1268 residues, 5 models selected 
     5794
     5795> ~ribbon sel
     5796
     5797> ~select
     5798
     5799Nothing selected 
     5800
     5801> wait 60
     5802
     5803> view p4 60
     5804
     5805> view p7 60
     5806
     5807> wait 60
     5808
     5809> color /E:1-252 orange
     5810
     5811> color /F:1-214 pink
     5812
     5813> ~ribbon # *
     5814
     5815> ribbon #29 /V:381-768 /X
     5816
     5817> ribbon #31-33 /E:1-252 /F:1-214
     5818
     5819> wait 60
     5820
     5821> coordset #31-33 bounce true
     5822
     5823> wait 120
     5824
     5825> coordset #31-33
     5826
     5827> wait 60
     5828
     5829> fly p5
     5830
     5831> ~ribbon # *
     5832
     5833> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     5834
     5835> wait 60
     5836
     5837> ~ribbon # *
     5838
     5839> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     5840
     5841> coordset #31-33 bounce true
     5842
     5843> wait 120
     5844
     5845> view p6 60
     5846
     5847> wait 60
     5848
     5849> coordset #31-33 bounce true
     5850
     5851> wait 120
     5852
     5853> coordset #31-33
     5854
     5855> wait 60
     5856
     5857> ribbon #3,5,28
     5858
     5859> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     5860
     5861> wait 60
     5862
     5863> view p4 60
     5864
     5865> view p7 60
     5866
     5867> wait 60
     5868
     5869> color /E:1-252 orange
     5870
     5871> color /F:1-214 pink
     5872
     5873> ~ribbon # *
     5874
     5875> ribbon #29 /V:381-768 /X
     5876
     5877> ribbon #31-33 /E:1-252 /F:1-214
     5878
     5879> wait 60
     5880
     5881> coordset #31-33 bounce true
     5882
     5883> wait 120
     5884
     5885> coordset #31-33
     5886
     5887> wait 60
     5888
     5889> coordset #31-33 bounce true
     5890
     5891> wait 120
     5892
     5893> coordset #31-33
     5894
     5895> wait 60
     5896
     5897> fly p4
     5898
     5899> view p7 60
     5900
     5901> wait 60
     5902
     5903> color /E:1-252 orange
     5904
     5905> color /F:1-214 pink
     5906
     5907> ~ribbon # *
     5908
     5909> ribbon #29 /V:381-768 /X
     5910
     5911> ribbon #31-33 /E:1-252 /F:1-214
     5912
     5913> wait 60
     5914
     5915> coordset #31-33 bounce true
     5916
     5917> wait 120
     5918
     5919> coordset #31-33
     5920
     5921> wait 60
     5922
     5923> ribbon #3,5,28
     5924
     5925> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     5926
     5927> wait 60
     5928
     5929> view p4 60
     5930
     5931> wait 60
     5932
     5933> view p7 60
     5934
     5935> wait 60
     5936
     5937> color /E:1-252 orange
     5938
     5939> color /F:1-214 pink
     5940
     5941> ~ribbon # *
     5942
     5943> ribbon #29 /V:381-768 /X
     5944
     5945> ribbon #31-33 /E:1-252 /F:1-214
     5946
     5947> wait 60
     5948
     5949> coordset #31-33 bounce true
     5950
     5951> wait 120
     5952
     5953> coordset #31-33
     5954
     5955> wait 60
     5956
     5957> ribbon #30
     5958
     5959> hide #!30 models
     5960
     5961> show #!30 models
     5962
     5963> ribbon #5
     5964
     5965> ribbon #3,5,28
     5966
     5967> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     5968
     5969> wait 60
     5970
     5971> view p4 60
     5972
     5973> wait 60
     5974
     5975> view p7 60
     5976
     5977> wait 60
     5978
     5979> color /E:1-252 orange
     5980
     5981> color /F:1-214 pink
     5982
     5983> ~ribbon # *
     5984
     5985> ribbon #29 /V:381-768 /X
     5986
     5987> ribbon #31-33 /E:1-252 /F:1-214
     5988
     5989> wait 60
     5990
     5991> coordset #31-33 bounce true
     5992
     5993> wait 120
     5994
     5995> coordset #31-33
     5996
     5997> wait 60
     5998
     5999> ribbon #32
     6000
     6001> view p7 60
     6002
     6003> wait 60
     6004
     6005> color /E:1-252 orange
     6006
     6007> color /F:1-214 pink
     6008
     6009> ~ribbon # *
     6010
     6011> ribbon #29 /V:381-768 /X
     6012
     6013> ribbon #5 /E:1-252 /F:1-214
     6014
     6015> wait 60
     6016
     6017> ~ribbon #5
     6018
     6019> ribbon #31-33 /E:1-252 /F:1-214
     6020
     6021> coordset #31-33 bounce true
     6022
     6023> wait 120
     6024
     6025> coordset #31-33
     6026
     6027> wait 60
     6028
     6029> ribbon #3,5,28
     6030
     6031> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     6032
     6033> wait 60
     6034
     6035> view p4 60
     6036
     6037> view p7 60
     6038
     6039> wait 60
     6040
     6041> color /E:1-252 orange
     6042
     6043> color /F:1-214 pink
     6044
     6045> ~ribbon # *
     6046
     6047> ribbon #29 /V:381-768 /X
     6048
     6049> ribbon #5 /E:1-252 /F:1-214
     6050
     6051> wait 60
     6052
     6053> ~ribbon #5
     6054
     6055> ribbon #31-33 /E:1-252 /F:1-214
     6056
     6057> coordset #31-33 bounce true
     6058
     6059> wait 120
     6060
     6061> coordset #31-33
     6062
     6063> wait 60
     6064
     6065> ribbon #3,5,28
     6066
     6067> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     6068
     6069> ribbon #30 /B:1-414 /D:1-362
     6070
     6071> wait 60
     6072
     6073> view p4 60
     6074
     6075> ~ribbon # *
     6076
     6077> ribbon #3,5,27
     6078
     6079> view p5 60
     6080
     6081> wait 60
     6082
     6083> color /B:1-414 light sky blue
     6084
     6085> color /D:1-362 medium orchid
     6086
     6087> color /V: 381-463 dark slate blue
     6088
     6089> color /V: 464-572 dark goldenrod
     6090
     6091> color /V: 573-679 cadet blue
     6092
     6093> color /V: 680-768 dodger blue
     6094
     6095> color /X plum
     6096
     6097> color /N deep pink target c
     6098
     6099> ~ribbon # *
     6100
     6101> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     6102
     6103> wait 60
     6104
     6105> ~ribbon # *
     6106
     6107> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     6108
     6109> coordset #31-33 bounce true
     6110
     6111> wait 120
     6112
     6113> view p6 60
     6114
     6115> wait 60
     6116
     6117> coordset #31-33 bounce true
     6118
     6119> wait 120
     6120
     6121> coordset #31-33
     6122
     6123> wait 60
     6124
     6125> ribbon #3,5,28
     6126
     6127> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     6128
     6129> wait 60
     6130
     6131> view p4 60
     6132
     6133> wait 60
     6134
     6135> view p7 60
     6136
     6137> wait 60
     6138
     6139> color /E:1-252 orange
     6140
     6141> color /F:1-214 pink
     6142
     6143> ~ribbon # *
     6144
     6145> ribbon #29 /V:381-768 /X
     6146
     6147> ribbon #5 /E:1-252 /F:1-214
     6148
     6149> wait 60
     6150
     6151> ~ribbon #5
     6152
     6153> ribbon #31-33 /E:1-252 /F:1-214
     6154
     6155> coordset #31-33 bounce true
     6156
     6157> wait 120
     6158
     6159> coordset #31-33
     6160
     6161> wait 60
     6162
     6163> ribbon #3,5,28
     6164
     6165> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     6166
     6167> ribbon #30 /B:1-414 /D:1-362
     6168
     6169> wait 60
     6170
     6171> view p4 60
     6172
     6173> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     6174
     6175> view name p7
     6176
     6177> ~ribbon # *
     6178
     6179> ribbon #31-33
     6180
     6181> coordset #31-33
     6182
     6183> ~ribbon # *
     6184
     6185> ribbon #31-33
     6186
     6187> coordset #31-33
     6188
     6189> ~ribbon # *
     6190
     6191> ribbon #31-33
     6192
     6193> coordset #31-33
     6194
     6195> view name p8
     6196
     6197> view p8 60
     6198
     6199> wait 60
     6200
     6201> color /U light sea green
     6202
     6203> color /S pale turquoise
     6204
     6205> ~ribbon # *
     6206
     6207> ribbon #3 /U/S:264-605
     6208
     6209> ribbon #5 /A:1-463
     6210
     6211> name CSN1 /A:1-463
     6212
     6213> select CSN1
     6214
     621532211 atoms, 32854 bonds, 15 pseudobonds, 4012 residues, 20 models selected 
     6216
     6217> ~ribbon # *
     6218
     6219> ribbon #5
     6220
     6221> ~ribbon # *
     6222
     6223> ribbon #30
     6224
     6225> name CSN2 /B:1-414
     6226
     6227> name CSN4 /D:1-362
     6228
     6229> name CSN3 /C:1-364
     6230
     6231> name CSN5 /E:1-252
     6232
     6233> name CSN6 /F:1-214
     6234
     6235> name CSN7 /G:1-162
     6236
     6237> name CSN8 /H:1-193
     6238
     6239> name "helix bundle "
     6240> /A:464-505/B:415-443/C:365-403/D:363-406/E:253-333/F:215-316/G:163-215/H:194-209
     6241
     6242registering illegal selector name "helix bundle " 
     6243
     6244> name "lsit\\\"
     6245
     6246"lsit\" is not defined 
     6247
     6248> name list
     6249
     6250CSN1 /A:1-463 
     6251CSN2 /B:1-414 
     6252CSN3 /C:1-364 
     6253CSN4 /D:1-362 
     6254CSN5 /E:1-252 
     6255CSN6 /F:1-214 
     6256CSN7 /G:1-162 
     6257CSN8 /H:1-193 
     6258
     6259> name helix bundle
     6260> /A:464-505/B:415-443/C:365-403/D:363-406/E:253-333/F:215-316/G:163-215/H:194-209
     6261
     6262"helix" is reserved and cannot be redefined 
     6263
     6264> name "helix bundle"
     6265> /A:464-505/B:415-443/C:365-403/D:363-406/E:253-333/F:215-316/G:163-215/H:194-209
     6266
     6267registering illegal selector name "helix bundle" 
     6268
     6269> name helix_bundle
     6270> /A:464-505/B:415-443/C:365-403/D:363-406/E:253-333/F:215-316/G:163-215/H:194-209
     6271
     6272registering illegal selector name "helix_bundle" 
     6273
     6274> name helixbundle
     6275> /A:464-505/B:415-443/C:365-403/D:363-406/E:253-333/F:215-316/G:163-215/H:194-209
     6276
     6277> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     6278
     6279> name 4HB /V: 381-463
     6280
     6281registering illegal selector name "4HB" 
     6282
     6283> ~ribbon # *
     6284
     6285> ribbon # 3
     6286
     6287> select 4HB
     6288
     6289Expected an objects specifier or a keyword 
     6290
     6291> name fourHB /V: 381-463
     6292
     6293> select /V: 464-572
     6294
     629510140 atoms, 10387 bonds, 1287 residues, 13 models selected 
     6296
     6297> select /V: 573-679
     6298
     62999724 atoms, 9854 bonds, 1209 residues, 13 models selected 
     6300
     6301> name ab /V: 464-572
     6302
     6303> name WHA /V: 573-679
     6304
     6305> name WHB /V: 680-768
     6306
     6307> name Rbx1-1 /X
     6308
     6309> name N8-1 /N
     6310
     6311> ~ribbon # *
     6312
     6313> ribbon N8-1 Rbx1-1 CSN2 CSN4
     6314
     6315> cartoon N8-1 Rbx1-1 CSN2 CSN4
     6316
     6317Expected a keyword 
     6318
     6319> ~ribbon # *
     6320
     6321> ribbon N8-1,Rbx1-1,CSN2,CSN4
     6322
     6323> cartoon N8-1,Rbx1-1,CSN2,CSN4
     6324
     6325Expected an atoms specifier or a keyword 
     6326
     6327> ~ribbon # *
     6328
     6329> ribbon N8-1 , Rbx1-1, CSN2, CSN4
     6330
     6331> cartoon N8-1 , Rbx1-1, CSN2, CSN4
     6332
     6333Expected a keyword 
     6334
     6335> ~ribbon # *
     6336
     6337> ribbon #3 n8
     6338
     6339> cartoon #3 n8
     6340
     6341Expected a keyword 
     6342
     6343> ~ribbon # *
     6344
     6345> ribbon #3 N8-1
     6346
     6347> cartoon #3 N8-1
     6348
     6349Expected a keyword 
     6350
     6351> ~ribbon # *
     6352
     6353> ribbon #3,5,27
     6354
     6355> select N8-1 Rbx1-1 CSN2 CSN4; ~ribbon ~sel
     6356
     6357Expected a keyword 
     6358
     6359> ~ribbon # *
     6360
     6361> ribbon #3,5,27
     6362
     6363> select N8-1,Rbx1-1,CSN2,CSN4; ~ribbon ~sel
     6364
     6365Expected an objects specifier or a keyword 
     6366
     6367> ~ribbon # *
     6368
     6369> ribbon #3,5,27
     6370
     6371> select N8-1//Rbx1-1//CSN2//CSN4; ~ribbon ~sel
     6372
     6373Expected an objects specifier or a keyword 
     6374
     6375> ~ribbon # *
     6376
     6377> ribbon #3,5,27
     6378
     6379> select N8-1
     6380
     638122984 atoms, 23452 bonds, 8 pseudobonds, 2856 residues, 16 models selected 
     6382
     6383> select Rbx1-1
     6384
     63859611 atoms, 9867 bonds, 42 pseudobonds, 1187 residues, 18 models selected 
     6386
     6387> select CSN2
     6388
     638931784 atoms, 32388 bonds, 6 pseudobonds, 3896 residues, 16 models selected 
     6390
     6391> select CSN4
     6392
     639320336 atoms, 20694 bonds, 2528 residues, 10 models selected 
     6394
     6395> ~ribbon ~sel
     6396
     6397> ~ribbon # *
     6398
     6399> ribbon #3,5,27
     6400
     6401> select N8-1
     6402
     640322984 atoms, 23452 bonds, 8 pseudobonds, 2856 residues, 16 models selected 
     6404
     6405> select add Rbx1-1
     6406
     640732595 atoms, 33319 bonds, 50 pseudobonds, 4043 residues, 33 models selected 
     6408
     6409> select CSN2
     6410
     641131784 atoms, 32388 bonds, 6 pseudobonds, 3896 residues, 16 models selected 
     6412
     6413> select CSN4
     6414
     641520336 atoms, 20694 bonds, 2528 residues, 10 models selected 
     6416
     6417> ~ribbon ~sel
     6418
     6419> ~ribbon # *
     6420
     6421> ribbon #3,5,27
     6422
     6423> select N8-1
     6424
     642522984 atoms, 23452 bonds, 8 pseudobonds, 2856 residues, 16 models selected 
     6426
     6427> select add Rbx1-1
     6428
     642932595 atoms, 33319 bonds, 50 pseudobonds, 4043 residues, 33 models selected 
     6430
     6431> select add CSN2
     6432
     643364379 atoms, 65707 bonds, 56 pseudobonds, 7939 residues, 44 models selected 
     6434
     6435> select add CSN4
     6436
     643784715 atoms, 86401 bonds, 56 pseudobonds, 10467 residues, 44 models selected 
     6438
     6439> ~ribbon ~sel
     6440
     6441> name CTD /V:381-768
     6442
     6443> name list
     6444
     6445CSN1 /A:1-463 
     6446CSN2 /B:1-414 
     6447CSN3 /C:1-364 
     6448CSN4 /D:1-362 
     6449CSN5 /E:1-252 
     6450CSN6 /F:1-214 
     6451CSN7 /G:1-162 
     6452CSN8 /H:1-193 
     6453CTD /V:381-768 
     6454N8-1 /N 
     6455Rbx1-1 /X 
     6456WHA /V: 573-679 
     6457WHB /V: 680-768 
     6458ab /V: 464-572 
     6459fourHB /V: 381-463 
     6460helixbundle
     6461/A:464-505/B:415-443/C:365-403/D:363-406/E:253-333/F:215-316/G:163-215/H:194-209 
     6462
     6463> name zone1 /N/X /B:1-414 /D:1-362 /V:381-768
     6464
     6465> name zone2 /E:1-252 /F:1-214 /V:381-768 /X
     6466
     6467> name zone3 /U:264-605 /S:264-605 /A:1-463
     6468
     6469> ~ribbon # *
     6470
     6471> ribbon #3,5,27
     6472
     6473> select zone1
     6474
     6475123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     6476
     6477> ~ribbon ~sel
     6478
     6479> ~ribbon # *
     6480
     6481> ribbon #3,5,27
     6482
     6483> select zone1
     6484
     6485123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     6486
     6487> ~ribbon ~sel
     6488
     6489> ~select
     6490
     6491Nothing selected 
     6492
     6493> wait 60
     6494
     6495> ~ribbon # *
     6496
     6497> ribbon #31-33
     6498
     6499> select zone1
     6500
     6501123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     6502
     6503> ~ribbon ~sel
     6504
     6505> ~select
     6506
     6507Nothing selected 
     6508
     6509> coordset #31-33 bounce true
     6510
     6511> wait 120
     6512
     6513> view p6 60
     6514
     6515> wait 60
     6516
     6517> coordset #31-33 bounce true
     6518
     6519> wait 120
     6520
     6521> coordset #31-33
     6522
     6523> wait 60
     6524
     6525> ribbon #3,5,28
     6526
     6527> select zone1
     6528
     6529123039 atoms, 125349 bonds, 69 pseudobonds, 15195 residues, 56 models selected 
     6530
     6531> ~ribbon sel
     6532
     6533> ~select
     6534
     6535Nothing selected 
     6536
     6537> wait 60
     6538
     6539> view p4 60
     6540
     6541> wait 120
     6542
     6543> ~ribbon # *
     6544
     6545> ribbon #29
     6546
     6547> ribbon #6
     6548
     6549> setattr /B:1-414 atoms domain CSN2
     6550
     6551Assigning domain attribute to 31784 items 
     6552Not creating attribute 'domain'; use 'create true' to override 
     6553
     6554> setattr /B:1-414 atoms domain CSN2 create true
     6555
     6556Assigning domain attribute to 31784 items 
     6557
     6558> select #5@@domain CSN2
     6559
     6560Expected a keyword 
     6561
     6562> select #5@@domain=CSN2
     6563
     65643078 atoms, 3132 bonds, 1 pseudobond, 374 residues, 2 models selected 
     6565
     6566> show sel atoms
     6567
     6568[Repeated 1 time(s)]
     6569
     6570> hide sel atoms
     6571
     6572> select #6@@domain=CSN2
     6573
     65743204 atoms, 3260 bonds, 391 residues, 1 model selected 
     6575
     6576> setattr /D:1-362 atoms domain CSN4 create true
     6577
     6578Assigning domain attribute to 20336 items 
     6579
     6580> setattr /C:1-364 atoms domain CSN3 create true
     6581
     6582Assigning domain attribute to 28348 items 
     6583
     6584> setattr /E:1-252 atoms domain CSN5 create true
     6585
     6586Assigning domain attribute to 13994 items 
     6587
     6588> setattr /F:1-214 atoms domain CSN6 create true
     6589
     6590Assigning domain attribute to 14968 items 
     6591
     6592> setattr /G:1-162 atoms domain CSN7 create true
     6593
     6594Assigning domain attribute to 12313 items 
     6595
     6596> setattr /H:1-193 atoms domain CSN8 create true
     6597
     6598Assigning domain attribute to 13212 items 
     6599
     6600> setattr /V:381-768 atoms domain CTD create true
     6601
     6602Assigning domain attribute to 38324 items 
     6603
     6604> setattr /N atoms domain N8-1 create true
     6605
     6606Assigning domain attribute to 22984 items 
     6607
     6608> setattr /X atoms domain Rbx1-1 create true
     6609
     6610Assigning domain attribute to 9611 items 
     6611
     6612> setattr /V: 573-679 atoms domain WHA create true
     6613
     6614Assigning domain attribute to 9724 items 
     6615
     6616> setattr /V: 680-768 atoms domain WHB create true
     6617
     6618Assigning domain attribute to 9581 items 
     6619
     6620> setattr /V: 464-572 atoms domain ab create true
     6621
     6622Assigning domain attribute to 10140 items 
     6623
     6624> setattr /V: 381-463 atoms domain fourHB create true
     6625
     6626Assigning domain attribute to 8879 items 
     6627
     6628> setattr
     6629> /A:464-505/B:415-443/C:365-403/D:363-406/E:253-333/F:215-316/G:163-215/H:194-209
     6630> atoms domain helixbundle create true
     6631
     6632Assigning domain attribute to 27669 items 
     6633
     6634> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     6635
     6636> select #6@@domain=CSN3
     6637
     66382873 atoms, 2927 bonds, 363 residues, 1 model selected 
     6639
     6640> select #6@@domain=CSN4
     6641
     66422898 atoms, 2943 bonds, 362 residues, 1 model selected 
     6643
     6644> select #6@@domain=CSN5
     6645
     66461844 atoms, 1892 bonds, 230 residues, 1 model selected 
     6647
     6648> select #6@@domain=CSN6
     6649
     66501463 atoms, 1493 bonds, 186 residues, 1 model selected 
     6651
     6652> select #6@@domain=CSN7
     6653
     66541217 atoms, 1233 bonds, 156 residues, 1 model selected 
     6655
     6656> select #6@@domain=CSN7
     6657
     66581217 atoms, 1233 bonds, 156 residues, 1 model selected 
     6659
     6660> select #6@@domain=CSN8
     6661
     66621276 atoms, 1308 bonds, 1 pseudobond, 161 residues, 2 models selected 
     6663
     6664> select #6@@domain=ctd
     6665
     6666Nothing selected 
     6667
     6668> select #6@@domain=CTD
     6669
     6670Nothing selected 
     6671
     6672> select #6@@domain=CTD
     6673
     6674Nothing selected 
     6675
     6676> setattr /V:381-768 atoms region CTD create true
     6677
     6678Assigning region attribute to 38324 items 
     6679
     6680> select #6@@region=CTD
     6681
     66822950 atoms, 2998 bonds, 1 pseudobond, 364 residues, 2 models selected 
     6683
     6684> select #6@@domain=WHA
     6685
     6686748 atoms, 758 bonds, 93 residues, 1 model selected 
     6687
     6688> select #6@@domain=WHB
     6689
     6690739 atoms, 748 bonds, 89 residues, 1 model selected 
     6691
     6692> select #6@@domain=fourHB
     6693
     6694683 atoms, 691 bonds, 83 residues, 1 model selected 
     6695
     6696> select #6@@domain=AB
     6697
     6698780 atoms, 799 bonds, 99 residues, 1 model selected 
     6699
     6700> INFO
     6701
     6702Unknown command: INFO 
     6703
     6704> info
     6705
     670676 models 
     6707#1, KCR-8mer.pdb, shown 
     670889360 atoms, 91112 bonds, 10992 residues, 24 chains
     6709(A,E,C,B,D,F,J,K,H,G,L,I,U,X,V,S,W,T,P,R,M,N,Q,O) 
     671024 missing structure 
     6711#1.1, missing structure, shown, 24 pseudobonds 
     6712#2, KCR-dimer-apo, shown 
     671322297 atoms, 22735 bonds, 2748 residues, 6 chains (S,W,T,U,V,X) 
     671422 metal coordination bonds, 6 missing structure 
     6715#2.1, metal coordination bonds, shown, 22 pseudobonds 
     6716#2.2, missing structure, shown, 6 pseudobonds 
     6717#3, N8~KCR-dimer-before, shown 
     671822404 atoms, 22842 bonds, 2750 residues, 6 chains (W,X,T,S,U,V) 
     67196 missing structure 
     6720#3.1, missing structure, shown, 6 pseudobonds 
     6721#4, N8-dimer-br-bound, hidden 
     67221182 atoms, 1192 bonds, 152 residues, 2 chains (N,O) 
     6723#4.1, N8-dimer-br-bound_N Gaussian surface, shown, 11408 triangles 
     6724#4.2, N8-dimer-br-bound_O Gaussian surface, shown, 11360 triangles 
     6725#5, CSN-4d10.pdb, shown 
     672620711 atoms, 21085 bonds, 2590 residues, 8 chains (A,B,C,D,E,F,G,H) 
     67274 metal coordination bonds, 5 missing structure 
     6728#5.1, metal coordination bonds, shown, 4 pseudobonds 
     6729#5.2, missing structure, shown, 5 pseudobonds 
     6730#6, KCR-CSN-removing.pdb, shown 
     673143336 atoms, 44154 bonds, 5380 residues, 14 chains
     6732(A,B,C,D,E,F,G,H,S,W,T,V,U,X) 
     673322 metal coordination bonds, 9 missing structure 
     6734#6.1, metal coordination bonds, shown, 22 pseudobonds 
     6735#6.2, missing structure, shown, 9 pseudobonds 
     6736#7, CSN-N8~KCR_combinemap_0725.pdb, shown 
     673743316 atoms, 44133 bonds, 5377 residues, 14 chains
     6738(A,B,C,D,F,G,H,S,W,T,V,U,X,E) 
     673913 metal coordination bonds, 9 missing structure 
     6740#7.1, metal coordination bonds, shown, 13 pseudobonds 
     6741#7.2, missing structure, shown, 9 pseudobonds 
     6742#8, KCR-CSN_whole_job489_0725.pdb, shown 
     674343323 atoms, 44140 bonds, 5378 residues, 14 chains
     6744(A,B,C,D,F,G,H,S,W,T,X,U,V,E) 
     674518 metal coordination bonds, 9 missing structure 
     6746#8.1, metal coordination bonds, shown, 18 pseudobonds 
     6747#8.2, missing structure, shown, 9 pseudobonds 
     6748#9, KCR-8mer-2.pdb, shown 
     674922340 atoms, 22778 bonds, 2748 residues, 6 chains (J,K,H,G,L,I) 
     67506 missing structure 
     6751#9.1, missing structure, shown, 6 pseudobonds 
     6752#10, KCR-8mer-3.pdb, shown 
     675322340 atoms, 22778 bonds, 2748 residues, 6 chains (P,R,M,N,Q,O) 
     67546 missing structure 
     6755#10.1, missing structure, shown, 6 pseudobonds 
     6756#11, KCR-8mer-4.pdb, shown 
     675722340 atoms, 22778 bonds, 2748 residues, 6 chains (A,E,C,B,D,F) 
     67586 missing structure 
     6759#11.1, missing structure, shown, 6 pseudobonds 
     6760#12, KCR-8mer-2.pdb, shown 
     676122340 atoms, 22778 bonds, 2748 residues, 6 chains (J,K,H,G,L,I) 
     67626 missing structure 
     6763#12.1, missing structure, shown, 6 pseudobonds 
     6764#13, KCR-8mer-3.pdb, shown 
     676522340 atoms, 22778 bonds, 2748 residues, 6 chains (P,R,M,N,Q,O) 
     67666 missing structure 
     6767#13.1, missing structure, shown, 6 pseudobonds 
     6768#14, KCR-8mer-4.pdb, shown 
     676922340 atoms, 22778 bonds, 2748 residues, 6 chains (A,E,C,B,D,F) 
     67706 missing structure 
     6771#14.1, missing structure, shown, 6 pseudobonds 
     6772#15, Morph - KCR-8mer-2.pdb, shown 
     677322340 atoms, 22778 bonds, 2748 residues, 6 chains (J,K,H,G,L,I), 31 coordsets 
     67746 missing structure 
     6775#15.1, missing structure, shown, 6 pseudobonds 
     6776#16, Morph - KCR-8mer-3.pdb, shown 
     677722340 atoms, 22778 bonds, 2748 residues, 6 chains (P,R,M,N,Q,O), 31 coordsets 
     67786 missing structure 
     6779#16.1, missing structure, shown, 6 pseudobonds 
     6780#17, Morph - KCR-8mer-4.pdb, shown 
     678122340 atoms, 22778 bonds, 2748 residues, 6 chains (A,E,C,B,D,F), 31 coordsets 
     67826 missing structure 
     6783#17.1, missing structure, shown, 6 pseudobonds 
     6784#18, N8-dimer-br-far, hidden 
     67851182 atoms, 1192 bonds, 152 residues, 2 chains (N,O) 
     6786#18.1, N8-dimer-before-removal.pdb_N Gaussian surface, shown, 11408 triangles 
     6787#18.2, N8-dimer-before-removal.pdb_O Gaussian surface, shown, 11360 triangles 
     6788#19, N8-dimer-br-near, hidden 
     67891182 atoms, 1192 bonds, 152 residues, 2 chains (N,O) 
     6790#19.1, N8-dimer-near_N Gaussian surface, shown, 11408 triangles 
     6791#19.2, N8-dimer-near_O Gaussian surface, shown, 11360 triangles 
     6792#20, Morph - N8-dimer-br-far, hidden 
     67931182 atoms, 1192 bonds, 152 residues, 2 chains (N,O), 11 coordsets 
     6794#20.1, Morph - N8-dimer-br-far_N Gaussian surface, shown, 11408 triangles 
     6795#20.2, Morph - N8-dimer-br-far_O Gaussian surface, shown, 11360 triangles 
     6796#21, Morph - N8-dimer-near, hidden 
     67971182 atoms, 1192 bonds, 152 residues, 2 chains (N,O), 61 coordsets 
     6798#21.1, Morph - N8-dimer-near_N Gaussian surface, shown, 11408 triangles 
     6799#21.2, Morph - N8-dimer-near_O Gaussian surface, shown, 11360 triangles 
     6800#22, KCR-8mer-1.pdb, hidden 
     680122340 atoms, 22778 bonds, 2748 residues, 6 chains (U,X,V,S,W,T) 
     68026 missing structure 
     6803#22.1, missing structure, shown, 6 pseudobonds 
     6804#23, Morph - KCR-8mer-1.pdb, shown 
     680522273 atoms, 22717 bonds, 2739 residues, 6 chains (U,X,V,S,W,T), 31 coordsets 
     68066 missing structure 
     6807#23.1, missing structure, shown, 6 pseudobonds 
     6808#24, Morph - KCR_dimer_j369_0806.pdb, shown 
     680922291 atoms, 22735 bonds, 2742 residues, 6 chains (S,W,T,U,V,X), 61 coordsets 
     68100 metal coordination bonds, 6 missing structure 
     6811#24.1, metal coordination bonds, shown, 0 pseudobonds 
     6812#24.2, missing structure, shown, 6 pseudobonds 
     6813#25, N8~KCR-dimer-out, shown 
     681422404 atoms, 22842 bonds, 2750 residues, 6 chains (W,X,T,S,U,V) 
     68156 missing structure 
     6816#25.1, missing structure, shown, 6 pseudobonds 
     6817#26, Morph - N8~KCR-dimer-out, shown 
     681822404 atoms, 22842 bonds, 2750 residues, 6 chains (W,X,T,S,U,V), 61 coordsets 
     68196 missing structure 
     6820#26.1, missing structure, shown, 6 pseudobonds 
     6821#27, N8-1-before-removal.pdb, shown 
     6822591 atoms, 596 bonds, 76 residues, 1 chains (N) 
     6823#28, N8-1-removing.pdb, shown 
     6824591 atoms, 596 bonds, 76 residues, 1 chains (N) 
     6825#29, KCR-removing.pdb, shown 
     682622278 atoms, 22715 bonds, 2745 residues, 6 chains (S,W,T,V,U,X) 
     682722 metal coordination bonds, 6 missing structure 
     6828#29.1, metal coordination bonds, shown, 22 pseudobonds 
     6829#29.2, missing structure, shown, 6 pseudobonds 
     6830#30, CSN-removing.pdb, shown 
     683121058 atoms, 21439 bonds, 2635 residues, 8 chains (A,B,C,D,E,F,G,H) 
     68323 missing structure 
     6833#30.1, missing structure, shown, 3 pseudobonds 
     6834#31, Morph - N8~KCR-dimer-before, shown 
     683522272 atoms, 22715 bonds, 2739 residues, 6 chains (W,X,T,S,U,V), 61 coordsets 
     68366 missing structure 
     6837#31.1, missing structure, shown, 6 pseudobonds 
     6838#32, Morph - CSN-4d10.pdb, shown 
     683920457 atoms, 20818 bonds, 2576 residues, 8 chains (A,B,C,D,E,F,G,H), 61
     6840coordsets 
     68410 metal coordination bonds, 6 missing structure 
     6842#32.1, metal coordination bonds, shown, 0 pseudobonds 
     6843#32.2, missing structure, shown, 6 pseudobonds 
     6844#33, Morph - N8-1-before-removal.pdb, shown 
     6845591 atoms, 596 bonds, 76 residues, 1 chains (N), 61 coordsets 
     6846
     6847> setattr list
     6848
     6849Missing or invalid "attrName" argument: Expected a text string 
     6850
     6851> setattr /N/X /B:1-414 /D:1-362 /V:381-768 atoms zone zone1 create true
     6852
     6853Assigning zone attribute to 123039 items 
     6854
     6855> ~ribbon # *
     6856
     6857> ribbon #3,5,27@@zone=zone1
     6858
     6859> wait 60
     6860
     6861> ~ribbon # *
     6862
     6863> ribbon #31-33@@zone=zone1
     6864
     6865> coordset #31-33 bounce true
     6866
     6867> wait 120
     6868
     6869> view p6 60
     6870
     6871> wait 60
     6872
     6873> coordset #31-33 bounce true
     6874
     6875> wait 120
     6876
     6877> coordset #31-33
     6878
     6879> wait 60
     6880
     6881> ribbon #3,5,28@@zone!=zone1
     6882
     6883> wait 60
     6884
     6885> view p4 60
     6886
     6887> wait 120
     6888
     6889> ribbon #3,5,28@@zone!==zone1
     6890
     6891> ribbon #3,5,28@@zone<zone1
     6892
     6893> ribbon #3,5,28@@zone>zone1
     6894
     6895> ~ribbon # *
     6896
     6897> ribbon #3,5,27@@domain=CSN2|domain=CSN4|region=CTD
     6898
     6899> wait 60
     6900
     6901> ~ribbon # *
     6902
     6903> ribbon #31-33@@domain=CSN2|domain=CSN4|region=CTD
     6904
     6905> coordset #31-33 bounce true
     6906
     6907> wait 120
     6908
     6909> view p6 60
     6910
     6911> wait 60
     6912
     6913> coordset #31-33 bounce true
     6914
     6915> wait 120
     6916
     6917> coordset #31-33
     6918
     6919> wait 60
     6920
     6921> ribbon #3,5,28
     6922
     6923> ~ribbon #3,5,28@@domain=CSN2|domain=CSN4|region=CTD
     6924
     6925> wait 60
     6926
     6927> view p4 60
     6928
     6929> wait 120
     6930
     6931> ~ribbon # *
     6932
     6933> ribbon #6
     6934
     6935> select @@domain=CSN2|domain=CSN4|region=CTD;
     6936
     6937Nothing selected 
     6938
     6939> select @@domain=CSN2 | domain=CSN4 | region=CTD;
     6940
     6941Expected a keyword 
     6942
     6943> select @@CSN2
     6944
     6945Nothing selected 
     6946
     6947> select CSN2
     6948
     694931784 atoms, 32388 bonds, 6 pseudobonds, 3896 residues, 16 models selected 
     6950
     6951> select CSN2 | CSN4
     6952
     695352120 atoms, 53082 bonds, 6 pseudobonds, 6424 residues, 16 models selected 
     6954
     6955> select CSN2 | CSN4 | CTD
     6956
     695790444 atoms, 92030 bonds, 19 pseudobonds, 11152 residues, 37 models selected 
     6958
     6959> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     6960
     6961> select #6 CSN2
     6962
     6963Expected a keyword 
     6964
     6965> select #6:CSN2
     6966
     6967Nothing selected 
     6968
     6969> select #6@@CSN2
     6970
     6971Nothing selected 
     6972
     6973> select #6 CSN2
     6974
     6975Expected a keyword 
     6976
     6977> select #6 :CSN2
     6978
     6979Nothing selected 
     6980
     6981> select #6@CSN2
     6982
     6983Nothing selected 
     6984
     6985> select CSN2
     6986
     698731784 atoms, 32388 bonds, 6 pseudobonds, 3896 residues, 16 models selected 
     6988
     6989> select #6@@domain=CSN2
     6990
     69913204 atoms, 3260 bonds, 391 residues, 1 model selected 
     6992
     6993> select #6@CSN2
     6994
     6995Nothing selected 
     6996
     6997> select #6 @CSN2
     6998
     6999Nothing selected 
     7000
     7001> select #6 @CSN4
     7002
     7003Nothing selected 
     7004
     7005> select #6 @CTD
     7006
     7007Nothing selected 
     7008
     7009> select @CTD
     7010
     7011Nothing selected 
     7012
     7013> select ::CTD
     7014
     7015Nothing selected 
     7016
     7017> ~ribbon # *
     7018
     7019> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     7020
     7021> wait 60
     7022
     7023> ~ribbon # *
     7024
     7025> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     7026
     7027> coordset #31-33 bounce true
     7028
     7029> wait 120
     7030
     7031> view p6 60
     7032
     7033> wait 60
     7034
     7035> coordset #31-33 bounce true
     7036
     7037> wait 120
     7038
     7039> coordset #31-33
     7040
     7041> wait 60
     7042
     7043> ribbon #3,5,28
     7044
     7045> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     7046
     7047> wait 60
     7048
     7049> view p4 60
     7050
     7051> wait 120
     7052
     7053> view p7 60
     7054
     7055> wait 60
     7056
     7057> color /E:1-252 orange
     7058
     7059> color /F:1-214 pink
     7060
     7061> ~ribbon # *
     7062
     7063> ribbon #29 /V:381-768 /X
     7064
     7065> ribbon #5 /E:1-252 /F:1-214
     7066
     7067> wait 60
     7068
     7069> ~ribbon #5
     7070
     7071> ribbon #31-33 /E:1-252 /F:1-214
     7072
     7073> coordset #31-33 bounce true
     7074
     7075> wait 120
     7076
     7077> coordset #31-33
     7078
     7079> wait 60
     7080
     7081> ribbon #3,5,28
     7082
     7083> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     7084
     7085> ribbon #30 /B:1-414 /D:1-362
     7086
     7087> wait 60
     7088
     7089> view p4 60
     7090
     7091> view p8 60
     7092
     7093> wait 60
     7094
     7095> color /U light sea green
     7096
     7097> color /S pale turquoise
     7098
     7099> ~ribbon # *
     7100
     7101> ribbon #3 /U:264-605 /S:264-605
     7102
     7103> ribbon #5 /A:1-463
     7104
     7105> wait 60
     7106
     7107> ~ribbon #3,5
     7108
     7109> ribbon #31-33 /U:264-605 /S:264-605 /A:1-463
     7110
     7111> coordset #31-33 bounce true
     7112
     7113> wait 120
     7114
     7115> coordset #31-33
     7116
     7117> wait 60
     7118
     7119> ~ribbon # *
     7120
     7121> ribbon #28-30
     7122
     7123> wait 60
     7124
     7125> view p4 60
     7126
     7127> color /V yellow green
     7128
     7129> color /U light sea green
     7130
     7131> color /S pale turquoise
     7132
     7133> color /T wheat
     7134
     7135> color /W,X plum
     7136
     7137> color /A tomato
     7138
     7139> color /B light sky blue
     7140
     7141> color /C medium slate blue
     7142
     7143> color /D medium orchid
     7144
     7145> color /E orange
     7146
     7147> color /F pink
     7148
     7149> color /G cornflower blue
     7150
     7151> color /H dark sea green
     7152
     7153> color /N deep pink target c
     7154
     7155> color /O gold target c
     7156
     7157> color #1,9-17/H,K,J,G,I,L chocolate
     7158
     7159> color #1,9-17/M,N,O,P,Q,R lime green
     7160
     7161> color #1,9-17/A,B,C,D,E,F olive
     7162
     7163> ~ribbon # *
     7164
     7165> ribbon #31-33
     7166
     7167> coordset #31-33 bounce true
     7168
     7169> wait 120
     7170
     7171> coordset #31-33
     7172
     7173> wait 60
     7174
     7175> ~ribbon # *
     7176
     7177> ribbon #3,5,27
     7178
     7179> wait 60
     7180
     7181> ~ribbon # *
     7182
     7183> ribbon #31-33
     7184
     7185> coordset #31-33
     7186
     7187> wait 60
     7188
     7189> ~ribbon # *
     7190
     7191> ribbon #3,5,27
     7192
     7193> view name p4
     7194
     7195> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     7196
     7197> open /home/zgchen/data/KCRI/movie/CSN/removing.cxc
     7198
     7199> color /V yellow green
     7200
     7201> color /U light sea green
     7202
     7203> color /S pale turquoise
     7204
     7205> color /T wheat
     7206
     7207> color /W,X plum
     7208
     7209> color /A tomato
     7210
     7211> color /B light sky blue
     7212
     7213> color /C medium slate blue
     7214
     7215> color /D medium orchid
     7216
     7217> color /E orange
     7218
     7219> color /F pink
     7220
     7221> color /G cornflower blue
     7222
     7223> color /H dark sea green
     7224
     7225> color /N deep pink target c
     7226
     7227> color /O gold target c
     7228
     7229> color #1,9-17/H,K,J,G,I,L chocolate
     7230
     7231> color #1,9-17/M,N,O,P,Q,R lime green
     7232
     7233> color #1,9-17/A,B,C,D,E,F olive
     7234
     7235> setattr /D:1-362 atoms domain CSN4 create true
     7236
     7237Assigning domain attribute to 20336 items 
     7238
     7239> setattr /C:1-364 atoms domain CSN3 create true
     7240
     7241Assigning domain attribute to 28348 items 
     7242
     7243> setattr /E:1-252 atoms domain CSN5 create true
     7244
     7245Assigning domain attribute to 13994 items 
     7246
     7247> setattr /F:1-214 atoms domain CSN6 create true
     7248
     7249Assigning domain attribute to 14968 items 
     7250
     7251> setattr /G:1-162 atoms domain CSN7 create true
     7252
     7253Assigning domain attribute to 12313 items 
     7254
     7255> setattr /H:1-193 atoms domain CSN8 create true
     7256
     7257Assigning domain attribute to 13212 items 
     7258
     7259> setattr /V:381-768 atoms region CTD create true
     7260
     7261Assigning region attribute to 38324 items 
     7262
     7263> setattr /N atoms domain N8-1 create true
     7264
     7265Assigning domain attribute to 22984 items 
     7266
     7267> setattr /X atoms domain Rbx1-1 create true
     7268
     7269Assigning domain attribute to 9611 items 
     7270
     7271> setattr /V: 573-679 atoms domain WHA create true
     7272
     7273Assigning domain attribute to 9724 items 
     7274
     7275> setattr /V: 680-768 atoms domain WHB create true
     7276
     7277Assigning domain attribute to 9581 items 
     7278
     7279> setattr /V: 464-572 atoms domain ab create true
     7280
     7281Assigning domain attribute to 10140 items 
     7282
     7283> setattr /V: 381-463 atoms domain fourHB create true
     7284
     7285Assigning domain attribute to 8879 items 
     7286
     7287> setattr
     7288> /A:464-505/B:415-443/C:365-403/D:363-406/E:253-333/F:215-316/G:163-215/H:194-209
     7289> atoms domain helixbundle create true
     7290
     7291Assigning domain attribute to 27669 items 
     7292
     7293> setattr /N/X /B:1-414 /D:1-362 /V:381-768 atoms zone zone1 create true
     7294
     7295Assigning zone attribute to 123039 items 
     7296
     7297> windowsize 640 480
     7298
     7299> ~ribbon # *
     7300
     7301> hide #!4,18-21 models
     7302
     7303> ribbon #5
     7304
     7305> fly p3
     7306
     7307> wait 60
     7308
     7309> roll y 2 180
     7310
     7311> wait
     7312
     7313> wait 60
     7314
     7315> color # * white
     7316
     7317> ribbon #26
     7318
     7319> view p4 60
     7320
     7321> coordset #26
     7322
     7323> wait 60
     7324
     7325> ~ribbon # *
     7326
     7327> ribbon #3,5,27
     7328
     7329> view p5 60
     7330
     7331> wait 60
     7332
     7333> color CSN2 light sky blue
     7334
     7335> color CSN4 medium orchid
     7336
     7337> color fourHB dark slate blue
     7338
     7339> color ab dark goldenrod
     7340
     7341> color WHA cadet blue
     7342
     7343> color WHB dodger blue
     7344
     7345> color Rbx1-1 plum
     7346
     7347> color N8 deep pink target c;
     7348
     7349Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
     7350'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
     7351or a keyword 
     7352
     7353> open /home/zgchen/data/KCRI/movie/CSN/removing.cxc
     7354
     7355> color /V yellow green
     7356
     7357> color /U light sea green
     7358
     7359> color /S pale turquoise
     7360
     7361> color /T wheat
     7362
     7363> color /W,X plum
     7364
     7365> color /A tomato
     7366
     7367> color /B light sky blue
     7368
     7369> color /C medium slate blue
     7370
     7371> color /D medium orchid
     7372
     7373> color /E orange
     7374
     7375> color /F pink
     7376
     7377> color /G cornflower blue
     7378
     7379> color /H dark sea green
     7380
     7381> color /N deep pink target c
     7382
     7383> color /O gold target c
     7384
     7385> color #1,9-17/H,K,J,G,I,L chocolate
     7386
     7387> color #1,9-17/M,N,O,P,Q,R lime green
     7388
     7389> color #1,9-17/A,B,C,D,E,F olive
     7390
     7391> windowsize 640 480
     7392
     7393> ~ribbon # *
     7394
     7395> hide #!4,18-21 models
     7396
     7397> ribbon #5
     7398
     7399> fly p3
     7400
     7401> wait 60
     7402
     7403> roll y 2 180
     7404
     7405> wait
     7406
     7407> wait 60
     7408
     7409> color # * white
     7410
     7411> ribbon #26
     7412
     7413> view p4 60
     7414
     7415> coordset #26
     7416
     7417> wait 60
     7418
     7419> ~ribbon # *
     7420
     7421> ribbon #3,5,27
     7422
     7423> view p5 60
     7424
     7425> wait 60
     7426
     7427> color /B:1-414 light sky blue
     7428
     7429> color /D:1-362 medium orchid
     7430
     7431> color /V: 381-463 dark slate blue
     7432
     7433> color /V: 464-572 dark goldenrod
     7434
     7435> color /V: 573-679 cadet blue
     7436
     7437> color /V: 680-768 dodger blue
     7438
     7439> color /X plum
     7440
     7441> color /N deep pink target c
     7442
     7443> ~ribbon # *
     7444
     7445> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     7446
     7447> wait 60
     7448
     7449> ~ribbon # *
     7450
     7451> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     7452
     7453> coordset #31-33 bounce true
     7454
     7455> wait 120
     7456
     7457> view p6 60
     7458
     7459> wait 60
     7460
     7461> coordset #31-33 bounce true
     7462
     7463> wait 120
     7464
     7465> coordset #31-33
     7466
     7467> wait 60
     7468
     7469> ribbon #3,5,28
     7470
     7471> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     7472
     7473> wait 60
     7474
     7475> view p4 60
     7476
     7477> wait 120
     7478
     7479> view p7 60
     7480
     7481> wait 60
     7482
     7483> color /E:1-252 orange
     7484
     7485> color /F:1-214 pink
     7486
     7487> ~ribbon # *
     7488
     7489> ribbon #29 /V:381-768 /X
     7490
     7491> ribbon #5 /E:1-252 /F:1-214
     7492
     7493> wait 60
     7494
     7495> ~ribbon #5
     7496
     7497> ribbon #31-33 /E:1-252 /F:1-214
     7498
     7499> coordset #31-33 bounce true
     7500
     7501> wait 120
     7502
     7503> coordset #31-33
     7504
     7505> wait 60
     7506
     7507> ribbon #3,5,28
     7508
     7509> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     7510
     7511> ribbon #30 /B:1-414 /D:1-362
     7512
     7513> wait 60
     7514
     7515> view p4 60
     7516
     7517> view p8 60
     7518
     7519> wait 60
     7520
     7521> color /U light sea green
     7522
     7523> color /S pale turquoise
     7524
     7525> color /A tomato
     7526
     7527> ~ribbon # *
     7528
     7529> ribbon #3 /U:264-605 /S:264-605
     7530
     7531> ribbon #5 /A:1-463
     7532
     7533> wait 60
     7534
     7535> ~ribbon #3,5
     7536
     7537> ribbon #31-33 /U:264-605 /S:264-605 /A:1-463
     7538
     7539> coordset #31-33 bounce true
     7540
     7541> wait 120
     7542
     7543> coordset #31-33
     7544
     7545> wait 60
     7546
     7547> ~ribbon # *
     7548
     7549> ribbon #28-30
     7550
     7551> wait 60
     7552
     7553> view p4 60
     7554
     7555> wait 60
     7556
     7557> color /V yellow green
     7558
     7559> color /U light sea green
     7560
     7561> color /S pale turquoise
     7562
     7563> color /T wheat
     7564
     7565> color /W,X plum
     7566
     7567> color /A tomato
     7568
     7569> color /B light sky blue
     7570
     7571> color /C medium slate blue
     7572
     7573> color /D medium orchid
     7574
     7575> color /E orange
     7576
     7577> color /F pink
     7578
     7579> color /G cornflower blue
     7580
     7581> color /H dark sea green
     7582
     7583> color /N deep pink target c
     7584
     7585> color /O gold target c
     7586
     7587> color #1,9-17/H,K,J,G,I,L chocolate
     7588
     7589> color #1,9-17/M,N,O,P,Q,R lime green
     7590
     7591> color #1,9-17/A,B,C,D,E,F olive
     7592
     7593> wait 60
     7594
     7595> ~ribbon # *
     7596
     7597> ribbon #3,5,27
     7598
     7599> wait 60
     7600
     7601> ~ribbon # *
     7602
     7603> ribbon #31-33
     7604
     7605> coordset #31-33
     7606
     7607> wait 60
     7608
     7609executed removing.cxc 
     7610
     7611> open /home/zgchen/data/KCRI/movie/CSN/removing.cxc
     7612
     7613> color /V yellow green
     7614
     7615> color /U light sea green
     7616
     7617> color /S pale turquoise
     7618
     7619> color /T wheat
     7620
     7621> color /W,X plum
     7622
     7623> color /A tomato
     7624
     7625> color /B light sky blue
     7626
     7627> color /C medium slate blue
     7628
     7629> color /D medium orchid
     7630
     7631> color /E orange
     7632
     7633> color /F pink
     7634
     7635> color /G cornflower blue
     7636
     7637> color /H dark sea green
     7638
     7639> color /N deep pink target c
     7640
     7641> color /O gold target c
     7642
     7643> color #1,9-17/H,K,J,G,I,L chocolate
     7644
     7645> color #1,9-17/M,N,O,P,Q,R lime green
     7646
     7647> color #1,9-17/A,B,C,D,E,F olive
     7648
     7649> windowsize 640 480
     7650
     7651> ~ribbon # *
     7652
     7653> hide #!4,18-21 models
     7654
     7655> ribbon #5
     7656
     7657> fly p3
     7658
     7659> wait 60
     7660
     7661> roll y 2 180
     7662
     7663> wait
     7664
     7665> wait 60
     7666
     7667> color # * white
     7668
     7669> ribbon #26
     7670
     7671> view p4 60
     7672
     7673> coordset #26
     7674
     7675> wait 60
     7676
     7677> ~ribbon # *
     7678
     7679> ribbon #3,5,27
     7680
     7681> view p5 60
     7682
     7683> wait 60
     7684
     7685> color /B:1-414 light sky blue
     7686
     7687> color /D:1-362 medium orchid
     7688
     7689> color /V: 381-463 dark slate blue
     7690
     7691> color /V: 464-572 dark goldenrod
     7692
     7693> color /V: 573-679 cadet blue
     7694
     7695> color /V: 680-768 dodger blue
     7696
     7697> color /X plum
     7698
     7699> color /N deep pink target c
     7700
     7701> ~ribbon # *
     7702
     7703> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     7704
     7705> wait 60
     7706
     7707> ~ribbon # *
     7708
     7709> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     7710
     7711> coordset #31-33 bounce true
     7712
     7713> wait 120
     7714
     7715> view p6 60
     7716
     7717> wait 60
     7718
     7719> coordset #31-33
     7720
     7721> wait 60
     7722
     7723> coordset #31-33
     7724
     7725> wait 60
     7726
     7727> ribbon #3,5,28
     7728
     7729> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     7730
     7731> wait 60
     7732
     7733> view p4 60
     7734
     7735> wait 120
     7736
     7737> view p7 60
     7738
     7739> wait 60
     7740
     7741> color /E:1-252 orange
     7742
     7743> color /F:1-214 pink
     7744
     7745> ~ribbon # *
     7746
     7747> ribbon #29 /V:381-768 /X
     7748
     7749> ribbon #5 /E:1-252 /F:1-214
     7750
     7751> wait 60
     7752
     7753> ~ribbon #5
     7754
     7755> ribbon #31-33 /E:1-252 /F:1-214
     7756
     7757> coordset #31-33
     7758
     7759> wait 60
     7760
     7761> coordset #31-33
     7762
     7763> wait 60
     7764
     7765> ribbon #3,5,28
     7766
     7767> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     7768
     7769> ribbon #30 /B:1-414 /D:1-362
     7770
     7771> wait 60
     7772
     7773> view p4 60
     7774
     7775> wait 60
     7776
     7777> view p8 60
     7778
     7779> wait 60
     7780
     7781> color /U light sea green
     7782
     7783> color /S pale turquoise
     7784
     7785> color /A tomato
     7786
     7787> ~ribbon # *
     7788
     7789> ribbon #3 /U:264-605 /S:264-605
     7790
     7791> ribbon #5 /A:1-463
     7792
     7793> wait 60
     7794
     7795> ~ribbon #3,5
     7796
     7797> ribbon #31-33 /U:264-605 /S:264-605 /A:1-463
     7798
     7799> coordset #31-33
     7800
     7801> wait 60
     7802
     7803> coordset #31-33
     7804
     7805> wait 60
     7806
     7807> ~ribbon # *
     7808
     7809> ribbon #28-30
     7810
     7811> wait 60
     7812
     7813> view p4 60
     7814
     7815> wait 60
     7816
     7817> color /V yellow green
     7818
     7819> color /U light sea green
     7820
     7821> color /S pale turquoise
     7822
     7823> color /T wheat
     7824
     7825> color /W,X plum
     7826
     7827> color /A tomato
     7828
     7829> color /B light sky blue
     7830
     7831> color /C medium slate blue
     7832
     7833> color /D medium orchid
     7834
     7835> color /E orange
     7836
     7837> color /F pink
     7838
     7839> color /G cornflower blue
     7840
     7841> color /H dark sea green
     7842
     7843> color /N deep pink target c
     7844
     7845> color /O gold target c
     7846
     7847> color #1,9-17/H,K,J,G,I,L chocolate
     7848
     7849> color #1,9-17/M,N,O,P,Q,R lime green
     7850
     7851> color #1,9-17/A,B,C,D,E,F olive
     7852
     7853> wait 60
     7854
     7855> ~ribbon # *
     7856
     7857> ribbon #3,5,27
     7858
     7859> wait 60
     7860
     7861> ~ribbon # *
     7862
     7863> ribbon #31-33
     7864
     7865> coordset #31-33
     7866
     7867> wait 60
     7868
     7869executed removing.cxc 
     7870
     7871> color /V yellow green
     7872
     7873> color /U light sea green
     7874
     7875> color /S pale turquoise
     7876
     7877> color /T wheat
     7878
     7879> color /W,X plum
     7880
     7881> color /A tomato
     7882
     7883> color /B light sky blue
     7884
     7885> color /C medium slate blue
     7886
     7887> color /D medium orchid
     7888
     7889> color /E orange
     7890
     7891> color /F pink
     7892
     7893> color /G cornflower blue
     7894
     7895> color /H dark sea green
     7896
     7897> color /N deep pink target c
     7898
     7899> color /O gold target c
     7900
     7901> color #1,9-17/H,K,J,G,I,L chocolate
     7902
     7903> color #1,9-17/M,N,O,P,Q,R lime green
     7904
     7905> color #1,9-17/A,B,C,D,E,F olive
     7906
     7907> windowsize 640 480
     7908
     7909> ~ribbon # *
     7910
     7911> hide #!4,18-21 models
     7912
     7913> ribbon #5
     7914
     7915> fly p3
     7916
     7917> wait 60
     7918
     7919> roll y 2 180
     7920
     7921> wait
     7922
     7923> wait 60
     7924
     7925> color # * white
     7926
     7927> ribbon #26
     7928
     7929> view p4 60
     7930
     7931> coordset #26
     7932
     7933> wait 60
     7934
     7935> ~ribbon # *
     7936
     7937> ribbon #3,5,27
     7938
     7939> view p5 60
     7940
     7941> wait 60
     7942
     7943> color /B:1-414 light sky blue
     7944
     7945> color /D:1-362 medium orchid
     7946
     7947> color /V: 381-463 dark slate blue
     7948
     7949> color /V: 464-572 dark goldenrod
     7950
     7951> color /V: 573-679 cadet blue
     7952
     7953> color /V: 680-768 dodger blue
     7954
     7955> color /X plum
     7956
     7957> color /N deep pink target c
     7958
     7959> ~ribbon # *
     7960
     7961> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     7962
     7963> wait 60
     7964
     7965> ~ribbon # *
     7966
     7967> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     7968
     7969> coordset #31-33 bounce true
     7970
     7971> wait 120
     7972
     7973> view p6 60
     7974
     7975> wait 60
     7976
     7977> coordset #31-33
     7978
     7979> wait 60
     7980
     7981> coordset #31-33
     7982
     7983> wait 60
     7984
     7985> ribbon #3,5,28
     7986
     7987> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     7988
     7989> wait 60
     7990
     7991> view p4 60
     7992
     7993> wait 120
     7994
     7995> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     7996
     7997> color /V yellow green
     7998
     7999> color /U light sea green
     8000
     8001> color /S pale turquoise
     8002
     8003> color /T wheat
     8004
     8005> color /W,X gold
     8006
     8007> color /A tomato
     8008
     8009> color /B light sky blue
     8010
     8011> color /C medium slate blue
     8012
     8013> color /D medium orchid
     8014
     8015> color /E orange
     8016
     8017> color /F pink
     8018
     8019> color /G cornflower blue
     8020
     8021> color /H dark sea green
     8022
     8023> color /N deep pink target c
     8024
     8025> color /O gold target c
     8026
     8027> color #1,9-17/H,K,J,G,I,L chocolate
     8028
     8029> color #1,9-17/M,N,O,P,Q,R lime green
     8030
     8031> color #1,9-17/A,B,C,D,E,F olive
     8032
     8033> windowsize 640 480
     8034
     8035> ~ribbon # *
     8036
     8037> hide #!4,18-21 models
     8038
     8039> ribbon #5
     8040
     8041> fly p3
     8042
     8043> 2dlabels text CSN1 color tomato
     8044
     8045> fly p1
     8046
     8047> fly p3
     8048
     8049> ui mousemode right label
     8050
     8051> label delete residues
     8052
     8053[Repeated 2 time(s)]
     8054
     8055> ui mousemode right "move label"
     8056
     8057> 2dlabels #34.1 xpos 0.095 ypos 0.398
     8058
     8059> 2dlabels text CSN2 color light sky blue
     8060
     8061> 2dlabels #34.2 xpos 0.587 ypos 0.181
     8062
     8063> 2dlabels #34.1 xpos 0.127 ypos 0.381
     8064
     8065> 2dlabels text CSN3 color medium slate blue
     8066
     8067> 2dlabels #34.3 xpos 0.052 ypos 0.671
     8068
     8069> 2dlabels text CSN4 color medium orchid
     8070
     8071> 2dlabels #34.4 xpos 0.705 ypos 0.394
     8072
     8073> 2dlabels text CSN5 color orange
     8074
     8075> 2dlabels #34.5 xpos 0.194 ypos 0.481
     8076
     8077> 2dlabels #34.5 xpos 0.547 ypos 0.435
     8078
     8079> 2dlabels text CSN6 color pink
     8080
     8081> 2dlabels #34.6 xpos 0.639 ypos 0.698
     8082
     8083> 2dlabels #34.5 xpos 0.537 ypos 0.460
     8084
     8085> 2dlabels text CSN7 color cornflower blue
     8086
     8087> 2dlabels #34.7 xpos 0.597 ypos 0.850
     8088
     8089> 2dlabels text CSN8 color dark sea green
     8090
     8091> 2dlabels #34.8 xpos 0.284 ypos 0.852
     8092
     8093> 2dlabels #34.7 xpos 0.614 ypos 0.852
     8094
     8095> 2dlabels #34.6 xpos 0.623 ypos 0.710
     8096
     8097> 2dlabels #34.1,34.2 visibility false
     8098
     8099> 2dlabels #34.1 #34.2 visibility false
     8100
     8101> 2dlabels #34.1 #34.2 visibility true
     8102
     8103> ~ribbon # *
     8104
     8105> hide #!4,18-21 models
     8106
     8107> ribbon #5
     8108
     8109> fly p3
     8110
     8111> wait 60
     8112
     8113> 2dlabels #34.1 #34.2 #34.3 #34.4 #34.5 #34.6 #34.7 #34.8 visibility true
     8114
     8115> wait 120
     8116
     8117> roll y 2 180
     8118
     8119> wait
     8120
     8121> wait 60
     8122
     8123> 2dlabels text COP9 color white
     8124
     8125> 2dlabels #34.9 xpos 0.772 ypos 0.773
     8126
     8127> 2dlabels #34.9 xpos 0.808 ypos 0.638
     8128
     8129> 2dlabels #34.9 xpos 0.812 ypos 0.652
     8130
     8131> 2dlabels visibility false
     8132
     8133> 2dlabels #34.9 visibility true
     8134
     8135> roll y 1 360
     8136
     8137> wait
     8138
     8139> wait 60
     8140
     8141> color # * white
     8142
     8143> ribbon #26
     8144
     8145> view p4 60
     8146
     8147> coordset #26
     8148
     8149> wait 60
     8150
     8151> 2dlabels #34.9 xpos 0.831 ypos 0.787
     8152
     8153> 2dlabels text CRL3 dimer color white
     8154
     8155Expected a keyword 
     8156
     8157> 2dlabels text CRL3-dimer color white
     8158
     8159> 2dlabels #34.10 xpos 0.659 ypos 0.083
     8160
     8161> ~ribbon # *
     8162
     8163> hide #!4,18-21 models
     8164
     8165> ribbon #5
     8166
     8167> fly p3
     8168
     8169> wait 60
     8170
     8171> 2dlabels #34.1 #34.2 #34.3 #34.4 #34.5 #34.6 #34.7 #34.8 visibility true
     8172
     8173> wait 120
     8174
     8175> 2dlabels visibility false
     8176
     8177> 2dlabels #34.9 visibility true
     8178
     8179> roll y 1 360
     8180
     8181> wait
     8182
     8183> wait 60
     8184
     8185> color # * white
     8186
     8187> ribbon #26
     8188
     8189> view p4 60
     8190
     8191> coordset #26
     8192
     8193> wait 60
     8194
     8195> 2dlabels #34.10 visibility true
     8196
     8197> wait 60
     8198
     8199> ~ribbon # *
     8200
     8201> ribbon #3,5,27
     8202
     8203> view p5 60
     8204
     8205> wait 60
     8206
     8207> color /B:1-414 light sky blue
     8208
     8209> color /D:1-362 medium orchid
     8210
     8211> color /V: 381-463 dark slate blue
     8212
     8213> color /V: 464-572 dark goldenrod
     8214
     8215> color /V: 573-679 cadet blue
     8216
     8217> color /V: 680-768 dodger blue
     8218
     8219> color /X gold
     8220
     8221> color /N deep pink target c
     8222
     8223> ~ribbon # *
     8224
     8225> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     8226
     8227> wait 60
     8228
     8229> 2dlabels text CSN2 color light sky blue
     8230
     8231> 2dlabels #34.11 xpos 0.066 ypos 0.248
     8232
     8233> 2dlabels text CSN4 color medium orchid
     8234
     8235> 2dlabels #34.12 xpos 0.820 ypos 0.606
     8236
     8237> 2dlabels text 4HB color dark slate blue
     8238
     8239> 2dlabels #34.13 xpos 0.108 ypos 0.425
     8240
     8241> set bgColor white
     8242
     8243> set bgColor gray
     8244
     8245> set bgColor black
     8246
     8247> 2dlabels text a/b color dark goldenrod
     8248
     8249> 2dlabels #34.14 xpos 0.523 ypos 0.392
     8250
     8251> 2dlabels #34.14 xpos 0.372 ypos 0.188
     8252
     8253> 2dlabels text WHA color cadet blue
     8254
     8255> 2dlabels #34.15 xpos 0.619 ypos 0.200
     8256
     8257> 2dlabels text Rbx1 color gold
     8258
     8259> 2dlabels #34.16 xpos 0.528 ypos 0.492
     8260
     8261> 2dlabels text N8 color deep pink
     8262
     8263> 2dlabels #34.17 xpos 0.242 ypos 0.704
     8264
     8265> 2dlabels #34.17 xpos 0.217 ypos 0.802
     8266
     8267> 2dlabels #34.16 xpos 0.537 ypos 0.469
     8268
     8269> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     8270
     8271> ~ribbon # *
     8272
     8273> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     8274
     8275> wait 60
     8276
     8277> 2dlabels visibility false
     8278
     8279> 2dlabels #34.11 #34.12 #34.13 #34.14 #34.15 #34.16 #34.17 visibility true
     8280
     8281> ~ribbon # *
     8282
     8283> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     8284
     8285> coordset #31-33
     8286
     8287> wait 60
     8288
     8289> view p6 60
     8290
     8291> wait 60
     8292
     8293> coordset #31-33
     8294
     8295> wait 60
     8296
     8297> coordset #31-33
     8298
     8299> wait 60
     8300
     8301> 2dlabels #34.14 xpos 0.392 ypos 0.427
     8302
     8303> 2dlabels #34.14 xpos 0.542 ypos 0.054
     8304
     8305> 2dlabels #34.14 xpos 0.406 ypos 0.394
     8306
     8307> fly p5
     8308
     8309> 2dlabels #34.14 xpos 0.370 ypos 0.219
     8310
     8311> 2dlabels #34.15 xpos 0.539 ypos 0.048
     8312
     8313> 2dlabels #34.13 xpos 0.119 ypos 0.504
     8314
     8315> 2dlabels #34.11 xpos 0.045 ypos 0.167
     8316
     8317> fly p6
     8318
     8319> 2dlabels text a/b color dark goldenrod
     8320
     8321> 2dlabels visibility false
     8322
     8323> 2dlabels #34.18 visibility false
     8324
     8325> 2dlabels #34.18 visibility true
     8326
     8327> 2dlabels #34.18 xpos 0.538 ypos 0.025
     8328
     8329> 2dlabels text WHA color cadet blue
     8330
     8331> 2dlabels #34.19 xpos 0.247 ypos 0.071
     8332
     8333> 2dlabels text Rbx1 color gold
     8334
     8335> 2dlabels #34.20 xpos 0.403 ypos 0.781
     8336
     8337> 2dlabels text N8 color deep pink
     8338
     8339> 2dlabels #34.21 xpos 0.266 ypos 0.877
     8340
     8341> 2dlabels text CSN2 color light sky blue
     8342
     8343> 2dlabels #34.22 xpos 0.156 ypos 0.194
     8344
     8345> 2dlabels text CSN4 color medium orchid
     8346
     8347> 2dlabels #34.23 xpos 0.816 ypos 0.250
     8348
     8349> 2dlabels #34.23 xpos 0.797 ypos 0.760
     8350
     8351> 2dlabels text 4HB color dark slate blue
     8352
     8353> 2dlabels #34.24 xpos 0.164 ypos 0.354
     8354
     8355> ~ribbon # *
     8356
     8357> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     8358
     8359> wait 60
     8360
     8361> 2dlabels visibility false
     8362
     8363> 2dlabels #34.11 #34.12 #34.13 #34.14 #34.15 #34.16 #34.17 visibility true
     8364
     8365> ~ribbon # *
     8366
     8367> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     8368
     8369> coordset #31-33
     8370
     8371> wait 60
     8372
     8373> coordset #31-33
     8374
     8375> wait 60
     8376
     8377> view p6 60
     8378
     8379> wait 60
     8380
     8381> 2dlabels visibility false
     8382
     8383> 2dlabels #34.18 #34.19 #34.20 #34.21 #34.22 #34.23 #34.24 visibility true
     8384
     8385> coordset #31-33
     8386
     8387> wait 60
     8388
     8389> coordset #31-33
     8390
     8391> wait 60
     8392
     8393> fly p5
     8394
     8395> ~ribbon # *
     8396
     8397> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     8398
     8399> wait 60
     8400
     8401> 2dlabels visibility false
     8402
     8403> 2dlabels #34.11 #34.12 #34.13 #34.14 #34.15 #34.16 #34.17 visibility true
     8404
     8405> view p6 60
     8406
     8407> wait 60
     8408
     8409> 2dlabels visibility false
     8410
     8411> 2dlabels #34.18 #34.19 #34.20 #34.21 #34.22 #34.23 #34.24 visibility true
     8412
     8413> coordset #31-33
     8414
     8415> wait 60
     8416
     8417> coordset #31-33
     8418
     8419> wait 60
     8420
     8421> ribbon #3,5,28
     8422
     8423> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     8424
     8425> wait 60
     8426
     8427> 2dlabels visibility false
     8428
     8429> view p4 60
     8430
     8431> wait 120
     8432
     8433> fly p5
     8434
     8435> ~ribbon # *
     8436
     8437> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     8438
     8439> coordset #31-33
     8440
     8441> wait 60
     8442
     8443> coordset #31-33
     8444
     8445> wait 60
     8446
     8447> view p6 60
     8448
     8449> wait 60
     8450
     8451> 2dlabels visibility false
     8452
     8453> 2dlabels #34.18 #34.19 #34.20 #34.21 #34.22 #34.23 #34.24 visibility true
     8454
     8455> coordset #31-33
     8456
     8457> wait 60
     8458
     8459> coordset #31-33
     8460
     8461> wait 60
     8462
     8463> ribbon #3,5,28
     8464
     8465> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     8466
     8467> wait 60
     8468
     8469> 2dlabels visibility false
     8470
     8471> view p4 60
     8472
     8473> wait 120
     8474
     8475> view p7 60
     8476
     8477> wait 60
     8478
     8479> color /E:1-252 orange
     8480
     8481> color /F:1-214 pink
     8482
     8483> ~ribbon # *
     8484
     8485> ribbon #29 /V:381-768 /X
     8486
     8487> ribbon #5 /E:1-252 /F:1-214
     8488
     8489> wait 60
     8490
     8491> close #34.18-24
     8492
     8493> 2dlabels text WHB color dodger blue
     8494
     8495> fly p5
     8496
     8497> 2dlabels #34.18 xpos 0.159 ypos 0.681
     8498
     8499> fly p6
     8500
     8501> 2dlabels text a/b color dark goldenrod
     8502
     8503> 2dlabels #34.19 xpos 0.578 ypos 0.194
     8504
     8505> fly p6
     8506
     8507> ~ribbon # *
     8508
     8509> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     8510
     8511> coordset #31-33
     8512
     8513> wait 120
     8514
     8515> coordset #31-33
     8516
     8517> wait 60
     8518
     8519> view p6 60
     8520
     8521> wait 60
     8522
     8523> 2dlabels #34.19 xpos 0.578 ypos 0.188
     8524
     8525[Repeated 1 time(s)]
     8526
     8527> 2dlabels #34.19 xpos 0.552 ypos 0.054
     8528
     8529> 2dlabels text WHA color cadet blue
     8530
     8531> 2dlabels #34.18 xpos 0.148 ypos 0.550
     8532
     8533> 2dlabels #34.20 xpos 0.200 ypos 0.065
     8534
     8535> hide #34.18 models
     8536
     8537> 2dlabels text WHA color cadet blue
     8538
     8539> 2dlabels #34.21 xpos 0.387 ypos 0.379
     8540
     8541> close #34.21
     8542
     8543> 2dlabels text Rbx1 color gold
     8544
     8545> 2dlabels #34.21 xpos 0.403 ypos 0.792
     8546
     8547> 2dlabels text N8 color deep pink
     8548
     8549> 2dlabels #34.22 xpos 0.264 ypos 0.877
     8550
     8551> 2dlabels text CSN2 color light sky blue
     8552
     8553> 2dlabels #34.23 xpos 0.139 ypos 0.233
     8554
     8555> 2dlabels text CSN4 color medium orchid
     8556
     8557> 2dlabels #34.24 xpos 0.769 ypos 0.777
     8558
     8559> 2dlabels text 4HB color dark slate blue
     8560
     8561> 2dlabels #34.25 xpos 0.116 ypos 0.421
     8562
     8563> 2dlabels text WHB color dodger blue
     8564
     8565> 2dlabels #34.26 xpos 0.134 ypos 0.548
     8566
     8567> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     8568
     8569> 2dlabels visibility false
     8570
     8571> view p7 60
     8572
     8573> wait 60
     8574
     8575> color /E:1-252 orange
     8576
     8577> color /F:1-214 pink
     8578
     8579> ~ribbon # *
     8580
     8581> ribbon #29 /V:381-768 /X
     8582
     8583> ribbon #5 /E:1-252 /F:1-214
     8584
     8585> wait 60
     8586
     8587> 2dlabels text 4HB color dark slate blue
     8588
     8589> close #34.27
     8590
     8591> 2dlabels text Rbx1 color gold
     8592
     8593> 2dlabels #34.27 xpos 0.736 ypos 0.288
     8594
     8595> 2dlabels text WHB color dodger blue
     8596
     8597> 2dlabels #34.28 xpos 0.275 ypos 0.079
     8598
     8599> 2dlabels #34.28 xpos 0.261 ypos 0.069
     8600
     8601> 2dlabels text CSN5 color orange
     8602
     8603> 2dlabels #34.29 xpos 0.111 ypos 0.348
     8604
     8605> 2dlabels text CSN6 color pink
     8606
     8607> 2dlabels #34.30 xpos 0.777 ypos 0.704
     8608
     8609> view p7 60
     8610
     8611> wait 60
     8612
     8613> color /E:1-252 orange
     8614
     8615> color /F:1-214 pink
     8616
     8617> ~ribbon # *
     8618
     8619> ribbon #29 /V:381-768 /X
     8620
     8621> ribbon #5 /E:1-252 /F:1-214
     8622
     8623> 2dlabels #34.27 #34.28 #34.29 #34.30 visibility true
     8624
     8625> wait 60
     8626
     8627> ~ribbon #5
     8628
     8629> ribbon #31-33 /E:1-252 /F:1-214
     8630
     8631> coordset #31-33
     8632
     8633> wait 120
     8634
     8635> coordset #31-33
     8636
     8637> wait 60
     8638
     8639> ribbon #3,5,28
     8640
     8641> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     8642
     8643> ribbon #30 /B:1-414 /D:1-362
     8644
     8645> wait 60
     8646
     8647> view p4 60
     8648
     8649> wait 60
     8650
     8651> 2dlabels visibility false
     8652
     8653> ribbon #3,5,28
     8654
     8655> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     8656
     8657> ribbon #30 /B:1-414 /D:1-362
     8658
     8659> wait 60
     8660
     8661> view p4 60
     8662
     8663> wait 60
     8664
     8665> view p8 60
     8666
     8667> wait 60
     8668
     8669> color /U light sea green
     8670
     8671> color /S pale turquoise
     8672
     8673> color /A tomato
     8674
     8675> ~ribbon # *
     8676
     8677> ribbon #3 /U:264-605 /S:264-605
     8678
     8679> ribbon #5 /A:1-463
     8680
     8681> wait 60
     8682
     8683> 2dlabels text Kelch color light sea green
     8684
     8685> 2dlabels #34.31 xpos 0.756 ypos 0.169
     8686
     8687> 2dlabels text Kelch color pale turquoise
     8688
     8689> 2dlabels #34.32 xpos 0.167 ypos 0.056
     8690
     8691> 2dlabels text CSN1 color tomato
     8692
     8693> 2dlabels #34.33 xpos 0.183 ypos 0.825
     8694
     8695> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     8696
     8697> wait 60
     8698
     8699> ~ribbon #3,5
     8700
     8701> ribbon #31-33 /U:264-605 /S:264-605 /A:1-463
     8702
     8703> coordset #31-33
     8704
     8705> wait 120
     8706
     8707> coordset #31-33
     8708
     8709> wait 120
     8710
     8711> 2dlabels visibility false
     8712
     8713> ~ribbon # *
     8714
     8715> ribbon #28-30
     8716
     8717> wait 60
     8718
     8719> view p4 60
     8720
     8721> wait 60
     8722
     8723> 2dlabels text removing state color white
     8724
     8725Expected a keyword 
     8726
     8727> 2dlabels text removing-state color white
     8728
     8729> 2dlabels #34.34 xpos 0.028 ypos 0.883
     8730
     8731> 2dlabels text before-removal color white
     8732
     8733> 2dlabels #34.34 xpos 0.017 ypos 0.740
     8734
     8735> 2dlabels #34.35 xpos 0.014 ypos 0.892
     8736
     8737> 2dlabels #34.35 xpos 0.017 ypos 0.890
     8738
     8739> 2dlabels arrow
     8740
     8741No 2D arrows in session 
     8742
     8743> ui mousemode right label
     8744
     8745> ui mousemode right "move label"
     8746
     8747> ui mousemode right label
     8748
     8749> label delete residues
     8750
     8751[Repeated 2 time(s)]
     8752
     8753> 2dlabels arrow start .6,.6 end .5 .5 color white
     8754
     8755Invalid "end" argument: Need exactly 2 ','-separated numbers 
     8756
     8757> 2dlabels arrow start .6,.6 end .5 ,.5 color white
     8758
     8759> label delete residues
     8760
     8761> ui mousemode right "move label"
     8762
     8763> 2dlabels arrow #35.1 start 0.508,0.677
     8764
     8765> 2dlabels arrow #35.1 end 0.509,0.508
     8766
     8767> 2dlabels arrow #35.1 end 0.170,0.796
     8768
     8769> 2dlabels arrow #35.1 start 0.170,0.873
     8770
     8771> 2dlabels visibility false
     8772
     8773> 2dlabels arrow visibility false
     8774
     8775> color /V yellow green
     8776
     8777> color /U light sea green
     8778
     8779> color /S pale turquoise
     8780
     8781> color /T wheat
     8782
     8783> color /W,X gold
     8784
     8785> color /A tomato
     8786
     8787> color /B light sky blue
     8788
     8789> color /C medium slate blue
     8790
     8791> color /D medium orchid
     8792
     8793> color /E orange
     8794
     8795> color /F pink
     8796
     8797> color /G cornflower blue
     8798
     8799> color /H dark sea green
     8800
     8801> color /N deep pink target c
     8802
     8803> color /O gold target c
     8804
     8805> color #1,9-17/H,K,J,G,I,L chocolate
     8806
     8807> color #1,9-17/M,N,O,P,Q,R lime green
     8808
     8809> color #1,9-17/A,B,C,D,E,F olive
     8810
     8811> 2dlabels #34.34 visibility true
     8812
     8813> wait 60
     8814
     8815> ~ribbon # *
     8816
     8817> ribbon #3,5,27
     8818
     8819> 2dlabels visibility false
     8820
     8821> 2dlabels #34.35 visibility true
     8822
     8823> wait 60
     8824
     8825> 2dlabels #34.34 visibility true
     8826
     8827> 2dlabels arrow #35 visibility true
     8828
     8829> ~ribbon # *
     8830
     8831> ribbon #31-33
     8832
     8833> coordset #31-33
     8834
     8835> wait 60
     8836
     8837> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     8838
     8839Can't find font for arrow 
     8840
     8841> open /home/zgchen/data/KCRI/movie/CSN/removing.cxc
     8842
     8843> color /V yellow green
     8844
     8845> color /U light sea green
     8846
     8847> color /S pale turquoise
     8848
     8849> color /T wheat
     8850
     8851> color /W,X gold
     8852
     8853> color /A tomato
     8854
     8855> color /B light sky blue
     8856
     8857> color /C medium slate blue
     8858
     8859> color /D medium orchid
     8860
     8861> color /E orange
     8862
     8863> color /F pink
     8864
     8865> color /G cornflower blue
     8866
     8867> color /H dark sea green
     8868
     8869> color /N deep pink target c
     8870
     8871> color /O gold target c
     8872
     8873> color #1,9-17/H,K,J,G,I,L chocolate
     8874
     8875> color #1,9-17/M,N,O,P,Q,R lime green
     8876
     8877> color #1,9-17/A,B,C,D,E,F olive
     8878
     8879> windowsize 640 480
     8880
     8881> ~ribbon # *
     8882
     8883> hide #!4,18-21 models
     8884
     8885> ribbon #5
     8886
     8887> fly p3
     8888
     8889> wait 60
     8890
     8891> 2dlabels #34.1 #34.2 #34.3 #34.4 #34.5 #34.6 #34.7 #34.8 visibility true
     8892
     8893> wait 120
     8894
     8895> 2dlabels visibility false
     8896
     8897> 2dlabels #34.9 visibility true
     8898
     8899> roll y 1 360
     8900
     8901> wait
     8902
     8903> wait 60
     8904
     8905> color # * white
     8906
     8907> ribbon #26
     8908
     8909> view p4 60
     8910
     8911> coordset #26
     8912
     8913> wait 60
     8914
     8915> 2dlabels #34.10 visibility true
     8916
     8917> wait 60
     8918
     8919> ~ribbon # *
     8920
     8921> ribbon #3,5,27
     8922
     8923> view p5 60
     8924
     8925> wait 60
     8926
     8927> color /B:1-414 light sky blue
     8928
     8929> color /D:1-362 medium orchid
     8930
     8931> color /V: 381-463 dark slate blue
     8932
     8933> color /V: 464-572 dark goldenrod
     8934
     8935> color /V: 573-679 cadet blue
     8936
     8937> color /V: 680-768 dodger blue
     8938
     8939> color /X gold
     8940
     8941> color /N deep pink target c
     8942
     8943> ~ribbon # *
     8944
     8945> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     8946
     8947> wait 60
     8948
     8949> 2dlabels visibility false
     8950
     8951> 2dlabels #34.11 #34.12 #34.13 #34.14 #34.15 #34.16 #34.17 #34.18 visibility
     8952> true
     8953
     8954> ~ribbon # *
     8955
     8956> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     8957
     8958> coordset #31-33
     8959
     8960> wait 120
     8961
     8962> coordset #31-33
     8963
     8964> wait 60
     8965
     8966> view p6 60
     8967
     8968> wait 60
     8969
     8970> 2dlabels visibility false
     8971
     8972> 2dlabels #34.19 #34.20 #34.21 #34.22 #34.23 #34.24 #34.25 #34.26 visibility
     8973> true
     8974
     8975> coordset #31-33
     8976
     8977> wait 120
     8978
     8979> coordset #31-33
     8980
     8981> wait 60
     8982
     8983> 2dlabels visibility false
     8984
     8985> ribbon #3,5,28
     8986
     8987> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     8988
     8989> wait 60
     8990
     8991> view p4 60
     8992
     8993> wait 120
     8994
     8995> view p7 60
     8996
     8997> wait 60
     8998
     8999> color /E:1-252 orange
     9000
     9001> color /F:1-214 pink
     9002
     9003> ~ribbon # *
     9004
     9005> ribbon #29 /V:381-768 /X
     9006
     9007> ribbon #5 /E:1-252 /F:1-214
     9008
     9009> 2dlabels #34.27 #34.28 #34.29 #34.30 visibility true
     9010
     9011> wait 60
     9012
     9013> ~ribbon #5
     9014
     9015> ribbon #31-33 /E:1-252 /F:1-214
     9016
     9017> coordset #31-33
     9018
     9019> wait 120
     9020
     9021> coordset #31-33
     9022
     9023> wait 120
     9024
     9025> 2dlabels visibility false
     9026
     9027> ribbon #3,5,28
     9028
     9029> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     9030
     9031> ribbon #30 /B:1-414 /D:1-362
     9032
     9033> wait 60
     9034
     9035> view p4 60
     9036
     9037> wait 60
     9038
     9039> view p8 60
     9040
     9041> wait 60
     9042
     9043> color /U light sea green
     9044
     9045> color /S pale turquoise
     9046
     9047> color /A tomato
     9048
     9049> ~ribbon # *
     9050
     9051> ribbon #3 /U:264-605 /S:264-605
     9052
     9053> ribbon #5 /A:1-463
     9054
     9055> 2dlabels #34.31 #34.32 #34.33 visibility true
     9056
     9057> wait 60
     9058
     9059> ~ribbon #3,5
     9060
     9061> ribbon #31-33 /U:264-605 /S:264-605 /A:1-463
     9062
     9063> coordset #31-33
     9064
     9065> wait 120
     9066
     9067> coordset #31-33
     9068
     9069> wait 120
     9070
     9071> 2dlabels visibility false
     9072
     9073> ~ribbon # *
     9074
     9075> ribbon #28-30
     9076
     9077> wait 60
     9078
     9079> view p4 60
     9080
     9081> wait 60
     9082
     9083> color /V yellow green
     9084
     9085> color /U light sea green
     9086
     9087> color /S pale turquoise
     9088
     9089> color /T wheat
     9090
     9091> color /W,X gold
     9092
     9093> color /A tomato
     9094
     9095> color /B light sky blue
     9096
     9097> color /C medium slate blue
     9098
     9099> color /D medium orchid
     9100
     9101> color /E orange
     9102
     9103> color /F pink
     9104
     9105> color /G cornflower blue
     9106
     9107> color /H dark sea green
     9108
     9109> color /N deep pink target c
     9110
     9111> color /O gold target c
     9112
     9113> color #1,9-17/H,K,J,G,I,L chocolate
     9114
     9115> color #1,9-17/M,N,O,P,Q,R lime green
     9116
     9117> color #1,9-17/A,B,C,D,E,F olive
     9118
     9119> 2dlabels #34.34 visibility true
     9120
     9121> wait 60
     9122
     9123> ~ribbon # *
     9124
     9125> ribbon #3,5,27
     9126
     9127> 2dlabels visibility false
     9128
     9129> 2dlabels #34.35 visibility true
     9130
     9131> wait 60
     9132
     9133> 2dlabels #34.34 visibility true
     9134
     9135> 2dlabels arrow #35 visibility true
     9136
     9137> ~ribbon # *
     9138
     9139> ribbon #31-33
     9140
     9141> coordset #31-33
     9142
     9143> wait 120
     9144
     9145> coordset #31-33
     9146
     9147> wait 120
     9148
     9149executed removing.cxc 
     9150
     9151> 2dlabels visibility false
     9152
     9153> 2dlabels arrow visibility false
     9154
     9155> save /home/zgchen/data/KCRI/movie/CSN/CSN_movie_0819.cxs
     9156
     9157——— End of log from Mon Aug 22 13:56:21 2022 ———
     9158
     9159opened ChimeraX session 
     9160
     9161> 2dlabels arrow visibility false
     9162
     9163> open D:/CryoEM/KCRI/PAPER/9_movies/CSN/removing.cxc
     9164
     9165> color /V yellow green
     9166
     9167> color /U light sea green
     9168
     9169> color /S pale turquoise
     9170
     9171> color /T wheat
     9172
     9173> color /W,X gold
     9174
     9175> color /A tomato
     9176
     9177> color /B light sky blue
     9178
     9179> color /C medium slate blue
     9180
     9181> color /D medium orchid
     9182
     9183> color /E orange
     9184
     9185> color /F pink
     9186
     9187> color /G cornflower blue
     9188
     9189> color /H dark sea green
     9190
     9191> color /N deep pink target c
     9192
     9193> color /O gold target c
     9194
     9195> color #1,9-17/H,K,J,G,I,L chocolate
     9196
     9197> color #1,9-17/M,N,O,P,Q,R lime green
     9198
     9199> color #1,9-17/A,B,C,D,E,F olive
     9200
     9201> 2dlabels visibility false
     9202
     9203> 2dlabels arrow visibility false
     9204
     9205> windowsize 640 480
     9206
     9207> ~ribbon # *
     9208
     9209> hide #!4,18-21 models
     9210
     9211> ribbon #5
     9212
     9213> fly p3
     9214
     9215> wait 60
     9216
     9217> 2dlabels #34.1 #34.2 #34.3 #34.4 #34.5 #34.6 #34.7 #34.8 visibility true
     9218
     9219> wait 120
     9220
     9221> 2dlabels visibility false
     9222
     9223> 2dlabels #34.9 visibility true
     9224
     9225> roll y 1 360
     9226
     9227> wait
     9228
     9229> wait 60
     9230
     9231> color # * white
     9232
     9233> ribbon #26
     9234
     9235> view p4 60
     9236
     9237> coordset #26
     9238
     9239> wait 60
     9240
     9241> 2dlabels #34.10 visibility true
     9242
     9243> wait 60
     9244
     9245> ~ribbon # *
     9246
     9247> ribbon #3,5,27
     9248
     9249> view p5 60
     9250
     9251> wait 60
     9252
     9253> color /B:1-414 light sky blue
     9254
     9255> color /D:1-362 medium orchid
     9256
     9257> color /V: 381-463 dark slate blue
     9258
     9259> color /V: 464-572 dark goldenrod
     9260
     9261> color /V: 573-679 cadet blue
     9262
     9263> color /V: 680-768 dodger blue
     9264
     9265> color /X gold
     9266
     9267> color /N deep pink target c
     9268
     9269> ~ribbon # *
     9270
     9271> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     9272
     9273> wait 60
     9274
     9275> 2dlabels visibility false
     9276
     9277> 2dlabels #34.11 #34.12 #34.13 #34.14 #34.15 #34.16 #34.17 #34.18 visibility
     9278> true
     9279
     9280> ~ribbon # *
     9281
     9282> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     9283
     9284> coordset #31-33
     9285
     9286> wait 120
     9287
     9288> coordset #31-33
     9289
     9290> wait 60
     9291
     9292> view p6 60
     9293
     9294> wait 60
     9295
     9296> 2dlabels visibility false
     9297
     9298> 2dlabels #34.19 #34.20 #34.21 #34.22 #34.23 #34.24 #34.25 #34.26 visibility
     9299> true
     9300
     9301> coordset #31-33
     9302
     9303> wait 120
     9304
     9305> coordset #31-33
     9306
     9307> wait 60
     9308
     9309> 2dlabels visibility false
     9310
     9311> ribbon #3,5,28
     9312
     9313> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     9314
     9315> wait 60
     9316
     9317> view p4 60
     9318
     9319> wait 120
     9320
     9321> view p7 60
     9322
     9323> wait 60
     9324
     9325> color /E:1-252 orange
     9326
     9327> color /F:1-214 pink
     9328
     9329> ~ribbon # *
     9330
     9331> ribbon #29 /V:381-768 /X
     9332
     9333> ribbon #5 /E:1-252 /F:1-214
     9334
     9335> 2dlabels #34.27 #34.28 #34.29 #34.30 visibility true
     9336
     9337> wait 60
     9338
     9339> ~ribbon #5
     9340
     9341> ribbon #31-33 /E:1-252 /F:1-214
     9342
     9343> coordset #31-33
     9344
     9345> wait 120
     9346
     9347> coordset #31-33
     9348
     9349> wait 120
     9350
     9351> 2dlabels visibility false
     9352
     9353> ribbon #3,5,28
     9354
     9355> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     9356
     9357> ribbon #30 /B:1-414 /D:1-362
     9358
     9359> wait 60
     9360
     9361> view p4 60
     9362
     9363> wait 60
     9364
     9365> view p8 60
     9366
     9367> wait 60
     9368
     9369> color /U light sea green
     9370
     9371> color /S pale turquoise
     9372
     9373> color /A tomato
     9374
     9375> ~ribbon # *
     9376
     9377> ribbon #3 /U:264-605 /S:264-605
     9378
     9379> ribbon #5 /A:1-463
     9380
     9381> 2dlabels #34.31 #34.32 #34.33 visibility true
     9382
     9383> wait 60
     9384
     9385> ~ribbon #3,5
     9386
     9387> ribbon #31-33 /U:264-605 /S:264-605 /A:1-463
     9388
     9389> coordset #31-33
     9390
     9391> wait 120
     9392
     9393> coordset #31-33
     9394
     9395> wait 120
     9396
     9397> 2dlabels visibility false
     9398
     9399> ~ribbon # *
     9400
     9401> ribbon #28-30
     9402
     9403> wait 60
     9404
     9405> view p4 60
     9406
     9407> wait 60
     9408
     9409> color /V yellow green
     9410
     9411> color /U light sea green
     9412
     9413> color /S pale turquoise
     9414
     9415> color /T wheat
     9416
     9417> color /W,X gold
     9418
     9419> color /A tomato
     9420
     9421> color /B light sky blue
     9422
     9423> color /C medium slate blue
     9424
     9425> color /D medium orchid
     9426
     9427> color /E orange
     9428
     9429> color /F pink
     9430
     9431> color /G cornflower blue
     9432
     9433> color /H dark sea green
     9434
     9435> color /N deep pink target c
     9436
     9437> color /O gold target c
     9438
     9439> color #1,9-17/H,K,J,G,I,L chocolate
     9440
     9441> color #1,9-17/M,N,O,P,Q,R lime green
     9442
     9443> color #1,9-17/A,B,C,D,E,F olive
     9444
     9445> 2dlabels #34.34 visibility true
     9446
     9447> wait 60
     9448
     9449> ~ribbon # *
     9450
     9451> ribbon #3,5,27
     9452
     9453> 2dlabels visibility false
     9454
     9455> 2dlabels #34.35 visibility true
     9456
     9457> wait 60
     9458
     9459> 2dlabels #34.34 visibility true
     9460
     9461> 2dlabels arrow #35 visibility true
     9462
     9463> ~ribbon # *
     9464
     9465> ribbon #31-33
     9466
     9467> coordset #31-33
     9468
     9469> wait 120
     9470
     9471> coordset #31-33
     9472
     9473> wait 120
     9474
     9475executed removing.cxc 
     9476Can't find font for arrow 
     9477
     9478> open D:/CryoEM/KCRI/PAPER/9_movies/CSN/removing.cxc
     9479
     9480> color /V yellow green
     9481
     9482> color /U light sea green
     9483
     9484> color /S pale turquoise
     9485
     9486> color /T wheat
     9487
     9488> color /W,X gold
     9489
     9490> color /A tomato
     9491
     9492> color /B light sky blue
     9493
     9494> color /C medium slate blue
     9495
     9496> color /D medium orchid
     9497
     9498> color /E orange
     9499
     9500> color /F pink
     9501
     9502> color /G cornflower blue
     9503
     9504> color /H dark sea green
     9505
     9506> color /N deep pink target c
     9507
     9508> color /O gold target c
     9509
     9510> color #1,9-17/H,K,J,G,I,L chocolate
     9511
     9512> color #1,9-17/M,N,O,P,Q,R lime green
     9513
     9514> color #1,9-17/A,B,C,D,E,F olive
     9515
     9516> 2dlabels visibility false
     9517
     9518> 2dlabels arrow visibility false
     9519
     9520> windowsize 640 480
     9521
     9522> ~ribbon # *
     9523
     9524> hide #!4,18-21 models
     9525
     9526> ribbon #5
     9527
     9528> fly p3
     9529
     9530> movie record supersample 4 size 1280,960
     9531
     9532> graphics rate maxFrameRate 80
     9533
     9534> wait 60
     9535
     9536> 2dlabels #34.1 #34.2 #34.3 #34.4 #34.5 #34.6 #34.7 #34.8 visibility true
     9537
     9538> wait 120
     9539
     9540> 2dlabels visibility false
     9541
     9542> 2dlabels #34.9 visibility true
     9543
     9544> roll y 1 360
     9545
     9546> wait
     9547
     9548> wait 60
     9549
     9550> color # * white
     9551
     9552> ribbon #26
     9553
     9554> view p4 60
     9555
     9556> coordset #26
     9557
     9558> wait 60
     9559
     9560> 2dlabels #34.10 visibility true
     9561
     9562> wait 60
     9563
     9564> ~ribbon # *
     9565
     9566> ribbon #3,5,27
     9567
     9568> view p5 60
     9569
     9570> wait 60
     9571
     9572> color /B:1-414 light sky blue
     9573
     9574> color /D:1-362 medium orchid
     9575
     9576> color /V: 381-463 dark slate blue
     9577
     9578> color /V: 464-572 dark goldenrod
     9579
     9580> color /V: 573-679 cadet blue
     9581
     9582> color /V: 680-768 dodger blue
     9583
     9584> color /X gold
     9585
     9586> color /N deep pink target c
     9587
     9588> ~ribbon # *
     9589
     9590> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     9591
     9592> wait 60
     9593
     9594> 2dlabels visibility false
     9595
     9596> 2dlabels #34.11 #34.12 #34.13 #34.14 #34.15 #34.16 #34.17 #34.18 visibility
     9597> true
     9598
     9599> ~ribbon # *
     9600
     9601> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     9602
     9603> coordset #31-33
     9604
     9605> wait 120
     9606
     9607> coordset #31-33
     9608
     9609> wait 60
     9610
     9611> view p6 60
     9612
     9613> wait 60
     9614
     9615> 2dlabels visibility false
     9616
     9617> 2dlabels #34.19 #34.20 #34.21 #34.22 #34.23 #34.24 #34.25 #34.26 visibility
     9618> true
     9619
     9620> coordset #31-33
     9621
     9622> wait 120
     9623
     9624> coordset #31-33
     9625
     9626> wait 60
     9627
     9628> 2dlabels visibility false
     9629
     9630> ribbon #3,5,28
     9631
     9632> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     9633
     9634> wait 60
     9635
     9636> view p4 60
     9637
     9638> wait 120
     9639
     9640> view p7 60
     9641
     9642> wait 60
     9643
     9644> color /E:1-252 orange
     9645
     9646> color /F:1-214 pink
     9647
     9648> ~ribbon # *
     9649
     9650> ribbon #29 /V:381-768 /X
     9651
     9652> ribbon #5 /E:1-252 /F:1-214
     9653
     9654> 2dlabels #34.27 #34.28 #34.29 #34.30 visibility true
     9655
     9656> wait 60
     9657
     9658> ~ribbon #5
     9659
     9660> ribbon #31-33 /E:1-252 /F:1-214
     9661
     9662> coordset #31-33
     9663
     9664> wait 120
     9665
     9666> coordset #31-33
     9667
     9668> wait 120
     9669
     9670> 2dlabels visibility false
     9671
     9672> ribbon #3,5,28
     9673
     9674> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     9675
     9676> ribbon #30 /B:1-414 /D:1-362
     9677
     9678> wait 60
     9679
     9680> view p4 60
     9681
     9682> wait 60
     9683
     9684> view p8 60
     9685
     9686> wait 60
     9687
     9688> color /U light sea green
     9689
     9690> color /S pale turquoise
     9691
     9692> color /A tomato
     9693
     9694> ~ribbon # *
     9695
     9696> ribbon #3 /U:264-605 /S:264-605
     9697
     9698> ribbon #5 /A:1-463
     9699
     9700> 2dlabels #34.31 #34.32 #34.33 visibility true
     9701
     9702> wait 60
     9703
     9704> ~ribbon #3,5
     9705
     9706> ribbon #31-33 /U:264-605 /S:264-605 /A:1-463
     9707
     9708> coordset #31-33
     9709
     9710> wait 120
     9711
     9712> coordset #31-33
     9713
     9714> wait 120
     9715
     9716> 2dlabels visibility false
     9717
     9718> ~ribbon # *
     9719
     9720> ribbon #28-30
     9721
     9722> wait 60
     9723
     9724> view p4 60
     9725
     9726> wait 60
     9727
     9728> color /V yellow green
     9729
     9730> color /U light sea green
     9731
     9732> color /S pale turquoise
     9733
     9734> color /T wheat
     9735
     9736> color /W,X gold
     9737
     9738> color /A tomato
     9739
     9740> color /B light sky blue
     9741
     9742> color /C medium slate blue
     9743
     9744> color /D medium orchid
     9745
     9746> color /E orange
     9747
     9748> color /F pink
     9749
     9750> color /G cornflower blue
     9751
     9752> color /H dark sea green
     9753
     9754> color /N deep pink target c
     9755
     9756> color /O gold target c
     9757
     9758> color #1,9-17/H,K,J,G,I,L chocolate
     9759
     9760> color #1,9-17/M,N,O,P,Q,R lime green
     9761
     9762> color #1,9-17/A,B,C,D,E,F olive
     9763
     9764> 2dlabels #34.34 visibility true
     9765
     9766> wait 60
     9767
     9768> ~ribbon # *
     9769
     9770> ribbon #3,5,27
     9771
     9772> 2dlabels visibility false
     9773
     9774> 2dlabels #34.35 visibility true
     9775
     9776> wait 60
     9777
     9778> 2dlabels #34.34 visibility true
     9779
     9780> 2dlabels arrow #35 visibility true
     9781
     9782> ~ribbon # *
     9783
     9784> ribbon #31-33
     9785
     9786> coordset #31-33
     9787
     9788> wait 120
     9789
     9790> coordset #31-33
     9791
     9792> wait 120
     9793
     9794> movie encode E:\cryo-EM\KCRI\PAPER\9_movies\CSN\movie.mov quality highest
     9795
     9796Output directory does not exist: E:\cryo-EM\KCRI\PAPER\9_movies\CSN 
     9797
     9798> open D:/CryoEM/KCRI/PAPER/9_movies/CSN/removing.cxc
     9799
     9800> color /V yellow green
     9801
     9802> color /U light sea green
     9803
     9804> color /S pale turquoise
     9805
     9806> color /T wheat
     9807
     9808> color /W,X gold
     9809
     9810> color /A tomato
     9811
     9812> color /B light sky blue
     9813
     9814> color /C medium slate blue
     9815
     9816> color /D medium orchid
     9817
     9818> color /E orange
     9819
     9820> color /F pink
     9821
     9822> color /G cornflower blue
     9823
     9824> color /H dark sea green
     9825
     9826> color /N deep pink target c
     9827
     9828> color /O gold target c
     9829
     9830> color #1,9-17/H,K,J,G,I,L chocolate
     9831
     9832> color #1,9-17/M,N,O,P,Q,R lime green
     9833
     9834> color #1,9-17/A,B,C,D,E,F olive
     9835
     9836> 2dlabels visibility false
     9837
     9838> 2dlabels arrow visibility false
     9839
     9840> windowsize 640 480
     9841
     9842> ~ribbon # *
     9843
     9844> hide #!4,18-21 models
     9845
     9846> ribbon #5
     9847
     9848> fly p3
     9849
     9850> movie record supersample 4 size 1280,960
     9851
     9852> graphics rate maxFrameRate 80
     9853
     9854> wait 60
     9855
     9856> 2dlabels #34.1 #34.2 #34.3 #34.4 #34.5 #34.6 #34.7 #34.8 visibility true
     9857
     9858> wait 120
     9859
     9860> 2dlabels visibility false
     9861
     9862> 2dlabels #34.9 visibility true
     9863
     9864> roll y 1 360
     9865
     9866> wait
     9867
     9868> wait 60
     9869
     9870> color # * white
     9871
     9872> ribbon #26
     9873
     9874> view p4 60
     9875
     9876> coordset #26
     9877
     9878> wait 60
     9879
     9880> 2dlabels #34.10 visibility true
     9881
     9882> wait 60
     9883
     9884> ~ribbon # *
     9885
     9886> ribbon #3,5,27
     9887
     9888> view p5 60
     9889
     9890> wait 60
     9891
     9892> color /B:1-414 light sky blue
     9893
     9894> color /D:1-362 medium orchid
     9895
     9896> color /V: 381-463 dark slate blue
     9897
     9898> color /V: 464-572 dark goldenrod
     9899
     9900> color /V: 573-679 cadet blue
     9901
     9902> color /V: 680-768 dodger blue
     9903
     9904> color /X gold
     9905
     9906> color /N deep pink target c
     9907
     9908> ~ribbon # *
     9909
     9910> ribbon #3,5,27 /N/X /B:1-414 /D:1-362 /V:381-768
     9911
     9912> wait 60
     9913
     9914> 2dlabels visibility false
     9915
     9916> 2dlabels #34.11 #34.12 #34.13 #34.14 #34.15 #34.16 #34.17 #34.18 visibility
     9917> true
     9918
     9919> ~ribbon # *
     9920
     9921> ribbon #31-33 /N/X /B:1-414 /D:1-362 /V:381-768
     9922
     9923> coordset #31-33
     9924
     9925> wait 120
     9926
     9927> coordset #31-33
     9928
     9929> wait 60
     9930
     9931> view p6 60
     9932
     9933> wait 60
     9934
     9935> 2dlabels visibility false
     9936
     9937> 2dlabels #34.19 #34.20 #34.21 #34.22 #34.23 #34.24 #34.25 #34.26 visibility
     9938> true
     9939
     9940> coordset #31-33
     9941
     9942> wait 120
     9943
     9944> coordset #31-33
     9945
     9946> wait 60
     9947
     9948> 2dlabels visibility false
     9949
     9950> ribbon #3,5,28
     9951
     9952> ~ribbon #3,5,28 /N/X /B:1-414 /D:1-362 /V:381-768
     9953
     9954> wait 60
     9955
     9956> view p4 60
     9957
     9958> wait 120
     9959
     9960> view p7 60
     9961
     9962> wait 60
     9963
     9964> color /E:1-252 orange
     9965
     9966> color /F:1-214 pink
     9967
     9968> ~ribbon # *
     9969
     9970> ribbon #29 /V:381-768 /X
     9971
     9972> ribbon #5 /E:1-252 /F:1-214
     9973
     9974> 2dlabels #34.27 #34.28 #34.29 #34.30 visibility true
     9975
     9976> wait 60
     9977
     9978> ~ribbon #5
     9979
     9980> ribbon #31-33 /E:1-252 /F:1-214
     9981
     9982> coordset #31-33
     9983
     9984> wait 120
     9985
     9986> coordset #31-33
     9987
     9988> wait 120
     9989
     9990> 2dlabels visibility false
     9991
     9992> ribbon #3,5,28
     9993
     9994> ~ribbon #3,5 /N/X /B:1-414 /D:1-362 /E:1-252 /F:1-214 /V:381-768
     9995
     9996> ribbon #30 /B:1-414 /D:1-362
     9997
     9998> wait 60
     9999
     10000> view p4 60
     10001
     10002> wait 60
     10003
     10004> view p8 60
     10005
     10006> wait 60
     10007
     10008> color /U light sea green
     10009
     10010> color /S pale turquoise
     10011
     10012> color /A tomato
     10013
     10014> ~ribbon # *
     10015
     10016> ribbon #3 /U:264-605 /S:264-605
     10017
     10018> ribbon #5 /A:1-463
     10019
     10020> 2dlabels #34.31 #34.32 #34.33 visibility true
     10021
     10022> wait 60
     10023
     10024> ~ribbon #3,5
     10025
     10026> ribbon #31-33 /U:264-605 /S:264-605 /A:1-463
     10027
     10028> coordset #31-33
     10029
     10030> wait 120
     10031
     10032> coordset #31-33
     10033
     10034> wait 120
     10035
     10036> 2dlabels visibility false
     10037
     10038> ~ribbon # *
     10039
     10040> ribbon #28-30
     10041
     10042> wait 60
     10043
     10044> view p4 60
     10045
     10046> wait 60
     10047
     10048> color /V yellow green
     10049
     10050> color /U light sea green
     10051
     10052> color /S pale turquoise
     10053
     10054> color /T wheat
     10055
     10056> color /W,X gold
     10057
     10058> color /A tomato
     10059
     10060> color /B light sky blue
     10061
     10062> color /C medium slate blue
     10063
     10064> color /D medium orchid
     10065
     10066> color /E orange
     10067
     10068> color /F pink
     10069
     10070> color /G cornflower blue
     10071
     10072> color /H dark sea green
     10073
     10074> color /N deep pink target c
     10075
     10076> color /O gold target c
     10077
     10078> color #1,9-17/H,K,J,G,I,L chocolate
     10079
     10080> color #1,9-17/M,N,O,P,Q,R lime green
     10081
     10082> color #1,9-17/A,B,C,D,E,F olive
     10083
     10084> 2dlabels #34.34 visibility true
     10085
     10086> wait 60
     10087
     10088> ~ribbon # *
     10089
     10090> ribbon #3,5,27
     10091
     10092> 2dlabels visibility false
     10093
     10094> 2dlabels #34.35 visibility true
     10095
     10096> wait 60
     10097
     10098> 2dlabels #34.34 visibility true
     10099
     10100> 2dlabels arrow #35 visibility true
     10101
     10102> ~ribbon # *
     10103
     10104> ribbon #31-33
     10105
     10106> coordset #31-33
     10107
     10108> wait 120
     10109
     10110> coordset #31-33
     10111
     10112> wait 120
     10113
     10114> movie encode D:\CryoEM\KCRI\PAPER\9_movies\CSN\movie.mov quality highest
     10115
     10116Movie saved to \D:CryoEM\\...\CSN\movie.mov 
     10117 
     10118executed removing.cxc 
     10119
     10120> save D:/CryoEM/KCRI/PAPER/9_movies/CSN/CSN_movie_0819.cxs
     10121
     10122——— End of log from Mon Aug 22 17:28:01 2022 ———
     10123
     10124opened ChimeraX session 
     10125
     10126
     10127
     10128
     10129OpenGL version: 3.3.0 NVIDIA 472.19
     10130OpenGL renderer: NVIDIA GeForce RTX 3050 Ti Laptop GPU/PCIe/SSE2
     10131OpenGL vendor: NVIDIA Corporation
     10132Manufacturer: LENOVO
     10133Model: 82K8
     10134OS: Microsoft Windows 10 家庭中文版 (Build 19044)
     10135Memory: 16,498,810,880
     10136MaxProcessMemory: 137,438,953,344
     10137CPU: 16 AMD Ryzen 7 5800H with Radeon Graphics         
     10138OSLanguage: zh-CN
     10139Locale: ('zh_CN', 'cp936')
     10140PyQt5 5.15.2, Qt 5.15.2
     10141Installed Packages:
     10142    alabaster: 0.7.12
     10143    appdirs: 1.4.4
     10144    Babel: 2.9.1
     10145    backcall: 0.2.0
     10146    blockdiag: 2.0.1
     10147    certifi: 2021.10.8
     10148    cftime: 1.5.1.1
     10149    charset-normalizer: 2.0.9
     10150    ChimeraX-AddCharge: 1.2.2
     10151    ChimeraX-AddH: 2.1.11
     10152    ChimeraX-AlignmentAlgorithms: 2.0
     10153    ChimeraX-AlignmentHdrs: 3.2
     10154    ChimeraX-AlignmentMatrices: 2.0
     10155    ChimeraX-Alignments: 2.2.3
     10156    ChimeraX-AlphaFold: 1.0
     10157    ChimeraX-AltlocExplorer: 1.0.1
     10158    ChimeraX-AmberInfo: 1.0
     10159    ChimeraX-Arrays: 1.0
     10160    ChimeraX-Atomic: 1.31
     10161    ChimeraX-AtomicLibrary: 4.2
     10162    ChimeraX-AtomSearch: 2.0
     10163    ChimeraX-AtomSearchLibrary: 1.0
     10164    ChimeraX-AxesPlanes: 2.0
     10165    ChimeraX-BasicActions: 1.1
     10166    ChimeraX-BILD: 1.0
     10167    ChimeraX-BlastProtein: 2.0
     10168    ChimeraX-BondRot: 2.0
     10169    ChimeraX-BugReporter: 1.0
     10170    ChimeraX-BuildStructure: 2.6.1
     10171    ChimeraX-Bumps: 1.0
     10172    ChimeraX-BundleBuilder: 1.1
     10173    ChimeraX-ButtonPanel: 1.0
     10174    ChimeraX-CageBuilder: 1.0
     10175    ChimeraX-CellPack: 1.0
     10176    ChimeraX-Centroids: 1.2
     10177    ChimeraX-ChemGroup: 2.0
     10178    ChimeraX-Clashes: 2.2.2
     10179    ChimeraX-ColorActions: 1.0
     10180    ChimeraX-ColorGlobe: 1.0
     10181    ChimeraX-ColorKey: 1.5
     10182    ChimeraX-CommandLine: 1.1.5
     10183    ChimeraX-ConnectStructure: 2.0
     10184    ChimeraX-Contacts: 1.0
     10185    ChimeraX-Core: 1.3
     10186    ChimeraX-CoreFormats: 1.1
     10187    ChimeraX-coulombic: 1.3.2
     10188    ChimeraX-Crosslinks: 1.0
     10189    ChimeraX-Crystal: 1.0
     10190    ChimeraX-CrystalContacts: 1.0
     10191    ChimeraX-DataFormats: 1.2.2
     10192    ChimeraX-Dicom: 1.0
     10193    ChimeraX-DistMonitor: 1.1.5
     10194    ChimeraX-DistUI: 1.0
     10195    ChimeraX-Dssp: 2.0
     10196    ChimeraX-EMDB-SFF: 1.0
     10197    ChimeraX-ExperimentalCommands: 1.0
     10198    ChimeraX-FileHistory: 1.0
     10199    ChimeraX-FunctionKey: 1.0
     10200    ChimeraX-Geometry: 1.1
     10201    ChimeraX-gltf: 1.0
     10202    ChimeraX-Graphics: 1.1
     10203    ChimeraX-Hbonds: 2.1.2
     10204    ChimeraX-Help: 1.2
     10205    ChimeraX-HKCage: 1.3
     10206    ChimeraX-IHM: 1.1
     10207    ChimeraX-ImageFormats: 1.2
     10208    ChimeraX-IMOD: 1.0
     10209    ChimeraX-IO: 1.0.1
     10210    ChimeraX-ItemsInspection: 1.0
     10211    ChimeraX-Label: 1.1
     10212    ChimeraX-ListInfo: 1.1.1
     10213    ChimeraX-Log: 1.1.4
     10214    ChimeraX-LookingGlass: 1.1
     10215    ChimeraX-Maestro: 1.8.1
     10216    ChimeraX-Map: 1.1
     10217    ChimeraX-MapData: 2.0
     10218    ChimeraX-MapEraser: 1.0
     10219    ChimeraX-MapFilter: 2.0
     10220    ChimeraX-MapFit: 2.0
     10221    ChimeraX-MapSeries: 2.1
     10222    ChimeraX-Markers: 1.0
     10223    ChimeraX-Mask: 1.0
     10224    ChimeraX-MatchMaker: 2.0.4
     10225    ChimeraX-MDcrds: 2.6
     10226    ChimeraX-MedicalToolbar: 1.0.1
     10227    ChimeraX-Meeting: 1.0
     10228    ChimeraX-MLP: 1.1
     10229    ChimeraX-mmCIF: 2.4
     10230    ChimeraX-MMTF: 2.1
     10231    ChimeraX-Modeller: 1.2.6
     10232    ChimeraX-ModelPanel: 1.2.1
     10233    ChimeraX-ModelSeries: 1.0
     10234    ChimeraX-Mol2: 2.0
     10235    ChimeraX-Morph: 1.0
     10236    ChimeraX-MouseModes: 1.1
     10237    ChimeraX-Movie: 1.0
     10238    ChimeraX-Neuron: 1.0
     10239    ChimeraX-Nucleotides: 2.0.2
     10240    ChimeraX-OpenCommand: 1.7
     10241    ChimeraX-PDB: 2.6.5
     10242    ChimeraX-PDBBio: 1.0
     10243    ChimeraX-PDBLibrary: 1.0.2
     10244    ChimeraX-PDBMatrices: 1.0
     10245    ChimeraX-PickBlobs: 1.0
     10246    ChimeraX-Positions: 1.0
     10247    ChimeraX-PresetMgr: 1.0.1
     10248    ChimeraX-PubChem: 2.1
     10249    ChimeraX-ReadPbonds: 1.0.1
     10250    ChimeraX-Registration: 1.1
     10251    ChimeraX-RemoteControl: 1.0
     10252    ChimeraX-ResidueFit: 1.0
     10253    ChimeraX-RestServer: 1.1
     10254    ChimeraX-RNALayout: 1.0
     10255    ChimeraX-RotamerLibMgr: 2.0.1
     10256    ChimeraX-RotamerLibsDunbrack: 2.0
     10257    ChimeraX-RotamerLibsDynameomics: 2.0
     10258    ChimeraX-RotamerLibsRichardson: 2.0
     10259    ChimeraX-SaveCommand: 1.5
     10260    ChimeraX-SchemeMgr: 1.0
     10261    ChimeraX-SDF: 2.0
     10262    ChimeraX-Segger: 1.0
     10263    ChimeraX-Segment: 1.0
     10264    ChimeraX-SelInspector: 1.0
     10265    ChimeraX-SeqView: 2.4.6
     10266    ChimeraX-Shape: 1.0.1
     10267    ChimeraX-Shell: 1.0
     10268    ChimeraX-Shortcuts: 1.1
     10269    ChimeraX-ShowAttr: 1.0
     10270    ChimeraX-ShowSequences: 1.0
     10271    ChimeraX-SideView: 1.0
     10272    ChimeraX-Smiles: 2.1
     10273    ChimeraX-SmoothLines: 1.0
     10274    ChimeraX-SpaceNavigator: 1.0
     10275    ChimeraX-StdCommands: 1.6.1
     10276    ChimeraX-STL: 1.0
     10277    ChimeraX-Storm: 1.0
     10278    ChimeraX-Struts: 1.0
     10279    ChimeraX-Surface: 1.0
     10280    ChimeraX-SwapAA: 2.0
     10281    ChimeraX-SwapRes: 2.1
     10282    ChimeraX-TapeMeasure: 1.0
     10283    ChimeraX-Test: 1.0
     10284    ChimeraX-Toolbar: 1.1
     10285    ChimeraX-ToolshedUtils: 1.2
     10286    ChimeraX-Tug: 1.0
     10287    ChimeraX-UI: 1.13.7
     10288    ChimeraX-uniprot: 2.2
     10289    ChimeraX-UnitCell: 1.0
     10290    ChimeraX-ViewDockX: 1.0.1
     10291    ChimeraX-VIPERdb: 1.0
     10292    ChimeraX-Vive: 1.1
     10293    ChimeraX-VolumeMenu: 1.0
     10294    ChimeraX-VTK: 1.0
     10295    ChimeraX-WavefrontOBJ: 1.0
     10296    ChimeraX-WebCam: 1.0
     10297    ChimeraX-WebServices: 1.0
     10298    ChimeraX-Zone: 1.0
     10299    colorama: 0.4.4
     10300    comtypes: 1.1.10
     10301    cxservices: 1.1
     10302    cycler: 0.11.0
     10303    Cython: 0.29.24
     10304    decorator: 5.1.0
     10305    docutils: 0.17.1
     10306    filelock: 3.0.12
     10307    funcparserlib: 0.3.6
     10308    grako: 3.16.5
     10309    h5py: 3.6.0
     10310    html2text: 2020.1.16
     10311    idna: 3.3
     10312    ihm: 0.21
     10313    imagecodecs: 2021.4.28
     10314    imagesize: 1.3.0
     10315    ipykernel: 5.5.5
     10316    ipython: 7.23.1
     10317    ipython-genutils: 0.2.0
     10318    jedi: 0.18.0
     10319    Jinja2: 3.0.1
     10320    jupyter-client: 6.1.12
     10321    jupyter-core: 4.9.1
     10322    kiwisolver: 1.3.2
     10323    lxml: 4.6.3
     10324    lz4: 3.1.3
     10325    MarkupSafe: 2.0.1
     10326    matplotlib: 3.4.3
     10327    matplotlib-inline: 0.1.3
     10328    msgpack: 1.0.2
     10329    netCDF4: 1.5.7
     10330    networkx: 2.6.3
     10331    numexpr: 2.8.0
     10332    numpy: 1.21.2
     10333    openvr: 1.16.801
     10334    packaging: 21.3
     10335    ParmEd: 3.2.0
     10336    parso: 0.8.3
     10337    pickleshare: 0.7.5
     10338    Pillow: 8.3.2
     10339    pip: 21.2.4
     10340    pkginfo: 1.7.1
     10341    prompt-toolkit: 3.0.23
     10342    psutil: 5.8.0
     10343    pycollada: 0.7.1
     10344    pydicom: 2.1.2
     10345    Pygments: 2.10.0
     10346    PyOpenGL: 3.1.5
     10347    PyOpenGL-accelerate: 3.1.5
     10348    pyparsing: 3.0.6
     10349    PyQt5-commercial: 5.15.2
     10350    PyQt5-sip: 12.8.1
     10351    PyQtWebEngine-commercial: 5.15.2
     10352    python-dateutil: 2.8.2
     10353    pytz: 2021.3
     10354    pywin32: 228
     10355    pyzmq: 22.3.0
     10356    qtconsole: 5.1.1
     10357    QtPy: 1.11.3
     10358    RandomWords: 0.3.0
     10359    requests: 2.26.0
     10360    scipy: 1.7.1
     10361    setuptools: 57.5.0
     10362    sfftk-rw: 0.7.1
     10363    six: 1.16.0
     10364    snowballstemmer: 2.2.0
     10365    sortedcontainers: 2.4.0
     10366    Sphinx: 4.2.0
     10367    sphinx-autodoc-typehints: 1.12.0
     10368    sphinxcontrib-applehelp: 1.0.2
     10369    sphinxcontrib-blockdiag: 2.0.0
     10370    sphinxcontrib-devhelp: 1.0.2
     10371    sphinxcontrib-htmlhelp: 2.0.0
     10372    sphinxcontrib-jsmath: 1.0.1
     10373    sphinxcontrib-qthelp: 1.0.3
     10374    sphinxcontrib-serializinghtml: 1.1.5
     10375    suds-jurko: 0.6
     10376    tables: 3.6.1
     10377    tifffile: 2021.4.8
     10378    tinyarray: 1.2.3
     10379    tornado: 6.1
     10380    traitlets: 5.1.1
     10381    urllib3: 1.26.7
     10382    wcwidth: 0.2.5
     10383    webcolors: 1.11.1
     10384    wheel: 0.37.0
     10385    wheel-filename: 1.3.0
     10386    WMI: 1.5.1
     10387
     10388}}}