vop: 'Place' object has no attribute 'position'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open /Users/sevenguo/Library/CloudStorage/OneDrive-
> YaleUniversity/Projects/FliG_MotA/FliG_MotA_Modelling/Bb/2022-8-2Bb_CW_CCW.cxs

Opened CW-75-5.4A.mrc as #1, grid size 160,160,160, pixel 1, shown at level
0.0593, step 1, values float32  
Log from Thu Aug 4 10:21:37 2022UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open /Users/sevenguo/Library/CloudStorage/OneDrive-
> YaleUniversity/Projects/FliG_MotA/FliG_MotA_Modelling/Bb/2022-8-2Bb_CW_CCW.cxs

Opened CW-75-5.4A.mrc as #1.7, grid size 160,160,160, pixel 1, shown at level
0.0447, step 1, values float32  
Opened CC-75-5.4A.mrc as #1.14, grid size 160,160,160, pixel 1, shown at step
1, values float32  
Log from Thu Aug 4 10:01:25 2022UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open /Users/sevenguo/Library/CloudStorage/OneDrive-
> YaleUniversity/Projects/FliG_MotA/FliG_MotA_Modelling/Bb/2022-8-2Bb_CW_CCW.cxs

Opened CW-75-5.4A.mrc as #1.7, grid size 160,160,160, pixel 1, shown at step
1, values float32  
Opened CC-75-5.4A.mrc as #1.14, grid size 160,160,160, pixel 1, shown at step
1, values float32  
Log from Tue Aug 2 20:16:02 2022UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/sevenguo/Desktop/Bb/CW-81-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CW-80-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CW-79-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CW-78-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CW-77-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CW-76-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CW-75-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CC-81-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CC-80-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CC-79-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CC-78-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CC-77-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CC-76-5.4A-reverse.nad-012
> /Users/sevenguo/Desktop/Bb/CC-75-5.4A-reverse.nad-012

Unrecognized file suffix '.nad-012'  

> open /Users/sevenguo/Desktop/Bb/CW-81-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CW-80-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CW-79-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CW-78-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CW-77-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CW-76-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CW-75-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CC-81-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CC-80-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CC-79-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CC-78-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CC-77-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CC-76-5.4A.mrc
> /Users/sevenguo/Desktop/Bb/CC-75-5.4A.mrc

Opened CW-81-5.4A.mrc as #1.1, grid size 160,160,160, pixel 1, shown at level
0.182, step 1, values float32  
Opened CW-80-5.4A.mrc as #1.2, grid size 160,160,160, pixel 1, shown at level
0.183, step 1, values float32  
Opened CW-79-5.4A.mrc as #1.3, grid size 160,160,160, pixel 1, shown at level
0.175, step 1, values float32  
Opened CW-78-5.4A.mrc as #1.4, grid size 160,160,160, pixel 1, shown at level
0.189, step 1, values float32  
Opened CW-77-5.4A.mrc as #1.5, grid size 160,160,160, pixel 1, shown at level
0.18, step 1, values float32  
Opened CW-76-5.4A.mrc as #1.6, grid size 160,160,160, pixel 1, shown at level
0.185, step 1, values float32  
Opened CW-75-5.4A.mrc as #1.7, grid size 160,160,160, pixel 1, shown at level
0.177, step 1, values float32  
Opened CC-81-5.4A.mrc as #1.8, grid size 160,160,160, pixel 1, shown at level
0.201, step 1, values float32  
Opened CC-80-5.4A.mrc as #1.9, grid size 160,160,160, pixel 1, shown at level
0.199, step 1, values float32  
Opened CC-79-5.4A.mrc as #1.10, grid size 160,160,160, pixel 1, shown at level
0.195, step 1, values float32  
Opened CC-78-5.4A.mrc as #1.11, grid size 160,160,160, pixel 1, shown at level
0.202, step 1, values float32  
Opened CC-77-5.4A.mrc as #1.12, grid size 160,160,160, pixel 1, shown at level
0.197, step 1, values float32  
Opened CC-76-5.4A.mrc as #1.13, grid size 160,160,160, pixel 1, shown at level
0.186, step 1, values float32  
Opened CC-75-5.4A.mrc as #1.14, grid size 160,160,160, pixel 1, shown at level
0.201, step 1, values float32  

> hide #!1 models

> show #!1 models

> hide #!1.14 models

> hide #!1.13 models

> hide #!1.12 models

> hide #!1.11 models

> hide #!1.10 models

> hide #!1.9 models

> hide #!1.8 models

> hide #!1.7 models

> hide #!1.6 models

> hide #!1.5 models

> hide #!1.4 models

> hide #!1.3 models

> hide #!1.2 models

> volume #1.1 level 0.1191

> volume #1.1 style image region 0,0,79,159,159,79 step 1 showOutlineBox true

> view orient

> volume #!1.1 showOutlineBox false

> volume #!1.1 showOutlineBox true

> hide #!1.1 models

> show #!1.1 models

> volume #!1.1 planes z style image imageMode "full region"

> mousemode rightMode "move planes"

> volume #1.1 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.2 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.3 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.4 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.5 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.6 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.7 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.8 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.9 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.10 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.11 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.12 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.13 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.14 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 80 tiltedSlabSpacing 1 tiltedSlabPlaneCount 10

> mousemode rightMode "rotate slab"

> volume #1.1 style surface

> volume #1.1 style image region 0,0,79,159,159,79 step 1 imageMode "full
> region"

> volume #1.1 region 0,0,0,159,159,159 step 1

> volume #1.1 region 0,0,0,159,159,159 step 1 colorMode opaque8 orthoplanes
> xyz positionPlanes 79,79,79 imageMode orthoplanes

> volume #1.1 orthoplanes xyz positionPlanes 79,129,79

> volume #1.1 orthoplanes xyz positionPlanes 79,128,79

> volume #1.1 orthoplanes xyz positionPlanes 42,128,79

> volume #1.1 orthoplanes xyz positionPlanes 79,128,79

> volume #1.1 orthoplanes xyz positionPlanes 79,130,79

> volume #!1.1 showOutlineBox false

> volume #1.1 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.2 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.3 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.4 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.5 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.6 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.7 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.8 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.9 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.10 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.11 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.12 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.13 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.14 orthoplanes xyz positionPlanes 80,80,80 style image region all

> mousemode rightMode "move planes"

> volume #1.1 colorMode auto8 imageMode "full region"

> volume #!1.1 showOutlineBox false

> volume #1.1 style surface

> volume #1.1 unroll

Expected a keyword  

> volume unroll #1.1

Opened unrolled CW-81-5.4A.mrc as #2, grid size 168,756,160, pixel 1,1,1.01,
shown at step 1, values float32  

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> hide #!2 models

> show #!2 models

> volume #2 style image region 0,0,79,167,755,79 step 1 showOutlineBox true

> view orient

> volume #2 level -0.05812,0 level 0.1098,0.8 level 0.5822,0.8

> volume #2 level -0.05812,0 level -0.09719,0.7692 level 0.5822,0.8

> volume #2 color #ffb3ff color white color #ffb3ff

> volume #2 color #ffb3ff color black color #ffb3ff

> volume #2 level -0.02854,0.9385 level -0.09719,0.7692 level 0.5822,0.8

> volume #2 level -0.02854,0.9385 level -0.2931,0 level 0.5822,0.8

> volume #2 region 0,0,0,167,755,159 step 2

[Repeated 1 time(s)]

> volume #2 style surface

> volume #2 style image region 0,0,78,167,755,78 step 1

> volume #2 region 0,0,0,167,755,159 step 2

> volume #2 region 0,0,0,167,755,159 step 1 colorMode opaque8 positionPlanes
> 83,377,79 imageMode orthoplanes

> volume #2 level -0.02512,0.9538 level -0.2931,0 level 0.5822,0.8

> volume #2 color white color black color #ffb3ff

> volume #2 color black color black color #ffb3ff

> volume #2 orthoplanes xyz positionPlanes 122,377,79

> volume #2 orthoplanes xyz positionPlanes 73,377,79

> close #2

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> show #!1.1 models

> show #!1.2 models

> show #!1.3 models

> hide #!1.3 models

> hide #!1.2 models

> show #!1.4 models

> hide #!1.4 models

> show #!1.5 models

> hide #!1.5 models

> show #!1.6 models

> hide #!1.6 models

> show #!1.7 models

> hide #!1.7 models

> show #!1.8 models

> hide #!1.8 models

> show #!1.9 models

> hide #!1.9 models

> show #!1.10 models

> hide #!1.10 models

> show #!1.11 models

> hide #!1.11 models

> show #!1.12 models

> hide #!1.12 models

> show #!1.13 models

> hide #!1.13 models

> show #!1.14 models

> hide #!1.14 models

> close #1.1-6

> close #1.8-13

> show #!1.7 models

> show #!1.14 models

> volume showOutlineBox false

> volume #1.7 style surface

> volume #1.7 style image region 0,0,79,159,159,79 step 1 colorMode auto8
> showOutlineBox true imageMode "full region"

> volume #1.14 region 0,0,79,159,159,79 step 1 colorMode auto8 showOutlineBox
> true imageMode "full region"

> color #1 white

> volume #1.7 color black color #b3ffb3 color #b3ffb3

> volume #1.7 color white color #b3ffb3 color #b3ffb3

> volume #1.14 color white color #b3b3ff color #b3b3ff

> color #1.7 white models transparency 0

> color #1.14 white models transparency 0

> view orient

> hide #!1.14 models

> view orient

> volume unroll #1.7

Opened unrolled CW-75-5.4A.mrc as #2, grid size 155,758,160, pixel 1,1,1.01,
shown at step 1, values float32  

> volume #2 region 0,0,79,154,757,79 step 1

> volume #2 region 0,0,0,154,757,159 step 2

> volume #2 region 0,0,0,154,757,159 step 1 colorMode opaque8 positionPlanes
> 77,378,79 imageMode orthoplanes

> hide #!1.7 models

> volume #2 level -0.03699,0 level 0.123,0.8154 level 0.4189,1

> volume #2 color #ffb3b3 color white color #ffb3b3

> color #2 white

> color #2 white models transparency 0

> volume #2 orthoplanes xyz positionPlanes 77,378,0

> volume #2 orthoplanes xyz positionPlanes 71,378,0

> volume #2 orthoplanes xyz positionPlanes 71,0,0

> volume #2 orthoplanes xyz positionPlanes 71,0,159

> volume #2 orthoplanes xyz positionPlanes 71,0,1

> close #2

> show #!1.7 models

> view orient

> view x

Expected an objects specifier or a view name or a keyword  

> view xy

Expected an objects specifier or a view name or a keyword  

> volume #1.7

> view plane

Expected an objects specifier or a view name or a keyword  

> volume planes

Missing "planes" keyword's argument  

> volume #1.7 planes

Missing "planes" keyword's argument  

> volume #1.7 orthoplanes xz

> hide #!1.14 models

> hide #!1.7 models

> show #!1.7 models

> volume #1.7 region 0,0,79,159,159,79 step 1 colorMode auto8 imageMode "full
> region"

> volume #1.7 orthoplanes xz

> volume #1.7 orthoplanes xy

> volume #1.7 orthoplanes yz

> hide #!1.7 models

> volume #1.7 orthoplanes yz

[Repeated 1 time(s)]

> show #!1.7 models

> volume #1.7 expandSinglePlane

Missing "expandSinglePlane" keyword's argument  

> volume #1.7 planes expandSinglePlane

Invalid "planes" argument: Planes argument first field must be x, y, or z, got
"expandSinglePlane"  

> volume #1.7 expandSinglePlane true

> hide #!1.7 models

> show #!1.7 models

> volume #1.7 region 0,0,79,159,159,79 step 1 colorMode auto8 imageMode "full
> region"

> view orient

> volume #1.7 transparency 0

> volume #1.7 transparency 1

> volume #1.7 transparency 0.8

> volume #1.7 transparency 1

> volume #1.7 transparency 0

> volume #1.7 color black color white color white

> volume #1.7 color white color white color white

> set bgColor white

> set bgColor black

> volume #1.7 planes

Missing "planes" keyword's argument  

> volume #1.7 style mesh

> volume #1.7 style plane

Invalid "style" argument: Should be one of 'image', 'mesh', 'solid', or
'surface'  

> volume #1.7 style image

> volume #1.7 planes xz

Invalid "planes" argument: Planes argument first field must be x, y, or z, got
"xz"  

> volume #1.7 planes x

> volume #1.7 planes x 0,100

Expected a keyword  

> volume #1.7 planes x 0 100

Expected a keyword  

> volume #1.7 planes x,0,100

> volume #1.7 planes

Missing "planes" keyword's argument  

> view orient

> volume #1.7 planes x,0,100,1,1

> volume #1.7 planes x,0,100,1,1 expandSinglePlane true

> volume #1.7 planes y,0,100,1,1 expandSinglePlane true

> volume #1.7 planes y

> volume #1.7 planes x

> volume #1.7 planes z

> volume #1.7 planes y

> view orient

> volume #!1.7 showOutlineBox false

> volume #1.7 planes y,0,100,1,1 expandSinglePlane true

> view orient

> hide #!1.7 models

> show #!1.7 models

> volume #1.7 planes x,0,100,1,1 expandSinglePlane true

> view orient

> volume #1.7 planes x,0,100,1,1 expandSinglePlane true

> volume #1.7 planes x expandSinglePlane true

> volume #1.7 planes y expandSinglePlane true

> volume #1.7 planes z expandSinglePlane true

> volume #1.7 planes y expandSinglePlane true

> view orient

> volume #1.7 planes y expandSinglePlane true

> view orient

> volume #1.7 planes x expandSinglePlane true

> volume #1.7 planes z expandSinglePlane true

> view orient

> volume #1.7 orthoplanes xz positionPlanes 0,0,0

[Repeated 2 time(s)]

> volume #1.7 orthoplanes xz positionPlanes 73,0,0

> volume #1.7 orthoplanes xz positionPlanes 73,0,62

> volume #1.7 orthoplanes xz positionPlanes 73,0,73

> volume #1.7 orthoplanes xz positionPlanes 73,0,75

[Repeated 1 time(s)]

> volume #1.7 orthoplanes xz positionPlanes 73,0,76

> volume #1.7 orthoplanes xz positionPlanes 130,0,76

[Repeated 1 time(s)]

> volume #1.7 orthoplanes xz positionPlanes 130,0,159

[Repeated 1 time(s)]

> volume #1.7 orthoplanes xz positionPlanes 133,0,159

> volume #1.7 orthoplanes xz positionPlanes 133,0,74

> volume #1.7 orthoplanes xz positionPlanes 133,0,76

> save /Users/sevenguo/Desktop/Bb/2022-8-2Bb_CW_CCW.cxs

——— End of log from Tue Aug 2 20:16:02 2022 ———

opened ChimeraX session  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(NoModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)  

> marker #2 position 80,80,107 color red radius 3

> marker #4 position 0,0,0 color yellow radius 3

> marker #5 position 80,30,77 color yellow radius 3

> marker #6 position 80,80,77 color pink radius 3

> volume #1.7 style surface

> volume #1.7 level 0.0447

> surface dust #1.7 size 10

> color #1.7 #ffffff1a models

> view orient

> turn x -90

> turn y -90

> hide #5 models

> show #5 models

> hide #6 models

> show #6 models

> view name p1

> save /Users/sevenguo/Library/CloudStorage/OneDrive-
> YaleUniversity/Projects/FliG_MotA/FliG_MotA_Modelling/Bb/2022-8-2Bb_CW_CCW.cxs

> hide #5 models

> show #5 models

> hide #6 models

> show #6 models

> volume unroll #1.7

Opened unrolled CW-75-5.4A.mrc as #3, grid size 187,761,160, pixel
1.01,1,1.01, shown at step 1, values float32  

> view p1

> hide #!3 models

> volume unroll #1.7 axis y

Opened unrolled CW-75-5.4A.mrc as #7, grid size 248,778,160, pixel 1,1,1.01,
shown at step 1, values float32  

> view orient

> volume unroll #1.7 axis y

Opened unrolled CW-75-5.4A.mrc as #8, grid size 248,778,160, pixel 1,1,1.01,
shown at step 1, values float32  

> hide #!7 models

> show #!7 models

> hide #!7 models

> show #!7 models

> hide #!7 models

> hide #!8 models

> show #!8 models

> show #!7 models

> hide #!7 models

> show #!7 models

> close #7-8

> close #3

> view p1

> save /Users/sevenguo/Library/CloudStorage/OneDrive-
> YaleUniversity/Projects/FliG_MotA/FliG_MotA_Modelling/Bb/2022-8-2Bb_CW_CCW.cxs

——— End of log from Thu Aug 4 10:01:25 2022 ———

opened ChimeraX session  

> open /Users/sevenguo/Library/CloudStorage/OneDrive-
> YaleUniversity/Projects/FliG_MotA/FliG_MotA_Modelling/Bb/CW-75-5.4A.mrc

Opened CW-75-5.4A.mrc as #3, grid size 160,160,160, pixel 1, shown at level
0.177, step 1, values float32  

> close #1

> volume #3 level 0.05927

> volume showOutlineBox true

> color #3 #b2b2b21a models

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(NoModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)  

> view p1

> volume unroll #3 axis z coordinateSystem #3 center #3

Traceback (most recent call last):  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/02D95B96-9AEF-450A-9E38-AB1257C23627/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/02D95B96-9AEF-450A-9E38-AB1257C23627/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/02D95B96-9AEF-450A-9E38-AB1257C23627/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/map_filter/vopcommand.py", line 955, in volume_unroll  
a, c = axis_and_center(axis, center, coordinate_system, v.position)  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/02D95B96-9AEF-450A-9E38-AB1257C23627/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/map_filter/vopcommand.py", line 975, in axis_and_center  
c = to_coords.position.inverse() * csc  
AttributeError: 'Place' object has no attribute 'position'  
  

Populating font family aliases took 359 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.  

AttributeError: 'Place' object has no attribute 'position'  
  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/02D95B96-9AEF-450A-9E38-AB1257C23627/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/map_filter/vopcommand.py", line 975, in axis_and_center  
c = to_coords.position.inverse() * csc  
  
See log for complete Python traceback.  
  

> volume unroll #3 axis z coordinateSystem #3

Opened unrolled CW-75-5.4A.mrc as #1, grid size 173,759,160, pixel 1,1,1.01,
shown at step 1, values float32  

> close #1

> rename #3 id #1

> view p1

> save /Users/sevenguo/Library/CloudStorage/OneDrive-
> YaleUniversity/Projects/FliG_MotA/FliG_MotA_Modelling/Bb/2022-8-2Bb_CW_CCW.cxs

——— End of log from Thu Aug 4 10:21:37 2022 ———

opened ChimeraX session  

> open /Users/sevenguo/Library/CloudStorage/OneDrive-
> YaleUniversity/Projects/FliG_MotA/FliG_MotA_Modelling/Bb/CW-75_unroll.mrc

Opened CW-75_unroll.mrc as #3, grid size 1,289,160, pixel 1.01,1,1.01, shown
at step 1, values float32  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(NoModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)  

> volume #3 transparency 0

> volume #3 level -0.04487,0 level 0.181,0.8 level 0.2705,1

> volume #3 level -0.04487,0 level 0.1846,0.6676 level 0.2705,1

> volume #3 level -0.1023,3.331e-16 level 0.1846,0.6676 level 0.2705,1

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select add #3

2 models selected  

> select add #3

2 models selected  

> close #3

> vop unroll #0 center 80,80,70

> vop unroll #1 center 80,80,70

Traceback (most recent call last):  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/BA3E634A-D4F4-4CA7-857C-5FCECC316D30/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/BA3E634A-D4F4-4CA7-857C-5FCECC316D30/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2918, in run  
result = ci.function(session, *args, optional=optional,  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/BA3E634A-D4F4-4CA7-857C-5FCECC316D30/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 3457, in __call__  
return self.cmd.run(text, _used_aliases=_used_aliases, log=log)  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/BA3E634A-D4F4-4CA7-857C-5FCECC316D30/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/BA3E634A-D4F4-4CA7-857C-5FCECC316D30/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/map_filter/vopcommand.py", line 955, in volume_unroll  
a, c = axis_and_center(axis, center, coordinate_system, v.position)  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/BA3E634A-D4F4-4CA7-857C-5FCECC316D30/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/map_filter/vopcommand.py", line 975, in axis_and_center  
c = to_coords.position.inverse() * csc  
AttributeError: 'Place' object has no attribute 'position'  
  

Populating font family aliases took 326 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.  

AttributeError: 'Place' object has no attribute 'position'  
  
File
"/private/var/folders/4k/b9ltzdh90cg7lspwp9jltz540000gn/T/AppTranslocation/BA3E634A-D4F4-4CA7-857C-5FCECC316D30/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/map_filter/vopcommand.py", line 975, in axis_and_center  
c = to_coords.position.inverse() * csc  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 ATI-4.8.54
OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: iMac
      Model Identifier: iMac18,3
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 3.8 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Memory: 16 GB
      System Firmware Version: 451.120.7.0.0
      OS Loader Version: 540.120.3~6
      SMC Version (system): 2.41f2

Software:

    System Software Overview:

      System Version: macOS 12.4 (21F79)
      Kernel Version: Darwin 21.5.0
      Time since boot: 47 days 8:07

Graphics/Displays:

    Radeon Pro 580:

      Chipset Model: Radeon Pro 580
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 8 GB
      Vendor: AMD (0x1002)
      Device ID: 0x67df
      Revision ID: 0x00c0
      ROM Revision: 113-D000AA-931
      VBIOS Version: 113-D0001A1X-025
      EFI Driver Version: 01.00.931
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        iMac:
          Display Type: Built-In Retina LCD
          Resolution: Retina 5K (5120 x 2880)
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        EA245WMi:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: 15503233NC  
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Connection Type: Thunderbolt/DisplayPort


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.0
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

[pett]

Plus a bunch of those modifier-key complaints

[Tom Goddard]

Fixed.

The volume unroll command center option parsing was broken. A very rarely used option.

Noted modifier key warnings in ticket #7395