![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Last modified 3 years ago
#7390 feedback defect
Crash in color button code
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | UI | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4rc202206032339 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x00007000158d6000 (most recent call first):
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1297 in run
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x000000011277ee00 (most recent call first):
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/widgets/color_button.py", line 147 in
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [59124]
Path: /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.4.0 (1.4.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [59124]
User ID: 502
Date/Time: 2022-08-03 22:53:22.061 +0200
OS Version: macOS 11.6.8 (20G730)
Report Version: 12
Bridge OS Version: 6.6 (19P6064)
Anonymous UUID: B1B2222F-FB32-24ED-F68B-7B2519834A55
Sleep/Wake UUID: F9EFF2A6-3750-46A5-85B7-00DE369ED148
Time Awake Since Boot: 240000 seconds
Time Since Wake: 1400 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000030034
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x30034:
-->
__TEXT 10f469000-10f46a000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff207fc91e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff2082b5bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff2070fbd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20870d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x000000010f4baf4f method_vectorcall_VARARGS + 303
6 org.python.python 0x000000010f58ae0c call_function + 732
7 org.python.python 0x000000010f58827e _PyEval_EvalFrameDefault + 25518
8 org.python.python 0x000000010f58bb03 _PyEval_EvalCode + 2611
9 org.python.python 0x000000010f4b2cb1 _PyFunction_Vectorcall + 289
10 QtCore.abi3.so 0x0000000120aee607 PyQtSlot::call(_object*, _object*) const + 39
11 QtCore.abi3.so 0x0000000120aee516 PyQtSlot::invoke(void**, _object*, void*, bool) const + 358
12 QtCore.abi3.so 0x0000000120aef445 PyQtSlotProxy::unislot(void**) + 85
13 QtCore.abi3.so 0x0000000120aef3ba PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
14 QtCore 0x0000000120e009e7 0x120d44000 + 772583
15 QtCore 0x0000000120e154d7 QTimer::timerEvent(QTimerEvent*) + 199
16 QtCore.abi3.so 0x00000001209ddbf9 sipQTimer::timerEvent(QTimerEvent*) + 121
17 QtCore 0x0000000120df8bad QObject::event(QEvent*) + 109
18 QtCore.abi3.so 0x00000001209dda7a sipQTimer::event(QEvent*) + 186
19 QtWidgets 0x000000012382a067 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
20 QtWidgets 0x000000012382b023 QApplication::notify(QObject*, QEvent*) + 499
21 QtWidgets.abi3.so 0x000000012334c829 sipQApplication::notify(QObject*, QEvent*) + 233
22 QtCore 0x0000000120dafdca QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
23 QtCore 0x0000000120f3ba01 QTimerInfoList::activateTimers() + 961
24 libqcocoa.dylib 0x000000013059d885 0x130585000 + 100485
25 com.apple.CoreFoundation 0x00007fff20923cec __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
26 com.apple.CoreFoundation 0x00007fff20923c54 __CFRunLoopDoSource0 + 180
27 com.apple.CoreFoundation 0x00007fff209239d4 __CFRunLoopDoSources0 + 242
28 com.apple.CoreFoundation 0x00007fff209223fc __CFRunLoopRun + 893
29 com.apple.CoreFoundation 0x00007fff209219bc CFRunLoopRunSpecific + 563
30 com.apple.HIToolbox 0x00007fff28b6aa83 RunCurrentEventLoopInMode + 292
31 com.apple.HIToolbox 0x00007fff28b6a7e5 ReceiveNextEventCommon + 587
32 com.apple.HIToolbox 0x00007fff28b6a583 _BlockUntilNextEventMatchingListInModeWithFilter + 70
33 com.apple.AppKit 0x00007fff2312ab12 _DPSNextEvent + 864
34 com.apple.AppKit 0x00007fff231292e5 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
35 com.apple.AppKit 0x00007fff2311b609 -[NSApplication run] + 586
36 libqcocoa.dylib 0x000000013059e48c 0x130585000 + 103564
37 QtCore 0x0000000120db9516 QEventLoop::exec(QFlags) + 486
38 QtCore 0x0000000120db03e5 QCoreApplication::exec() + 133
39 QtWidgets.abi3.so 0x000000012343990a meth_QApplication_exec(_object*, _object*) + 90
40 org.python.python 0x000000010f4f171d cfunction_call + 125
41 org.python.python 0x000000010f4b25b7 _PyObject_MakeTpCall + 359
42 org.python.python 0x000000010f58ae9c call_function + 876
43 org.python.python 0x000000010f5882a2 _PyEval_EvalFrameDefault + 25554
44 org.python.python 0x000000010f4b2d28 function_code_fastcall + 104
45 org.python.python 0x000000010f4b4d6a method_vectorcall + 202
46 org.python.python 0x000000010f58ae0c call_function + 732
47 org.python.python 0x000000010f5882a2 _PyEval_EvalFrameDefault + 25554
48 org.python.python 0x000000010f58bb03 _PyEval_EvalCode + 2611
49 org.python.python 0x000000010f4b2cb1 _PyFunction_Vectorcall + 289
50 org.python.python 0x000000010f58ae0c call_function + 732
51 org.python.python 0x000000010f58834b _PyEval_EvalFrameDefault + 25723
52 org.python.python 0x000000010f58bb03 _PyEval_EvalCode + 2611
53 org.python.python 0x000000010f581dab PyEval_EvalCode + 139
54 org.python.python 0x000000010f57ec12 builtin_exec + 626
55 org.python.python 0x000000010f4f1023 cfunction_vectorcall_FASTCALL + 195
56 org.python.python 0x000000010f58ae0c call_function + 732
57 org.python.python 0x000000010f58834b _PyEval_EvalFrameDefault + 25723
58 org.python.python 0x000000010f58bb03 _PyEval_EvalCode + 2611
59 org.python.python 0x000000010f4b2cb1 _PyFunction_Vectorcall + 289
60 org.python.python 0x000000010f58ae0c call_function + 732
61 org.python.python 0x000000010f58834b _PyEval_EvalFrameDefault + 25723
62 org.python.python 0x000000010f58bb03 _PyEval_EvalCode + 2611
63 org.python.python 0x000000010f4b2cb1 _PyFunction_Vectorcall + 289
64 org.python.python 0x000000010f5f1870 pymain_run_module + 208
65 org.python.python 0x000000010f5f0f87 Py_RunMain + 1431
66 org.python.python 0x000000010f5f158f pymain_main + 223
67 org.python.python 0x000000010f5f149b Py_Main + 43
68 edu.ucsf.cgl.ChimeraX 0x000000010f469dc8 main + 120
69 libdyld.dylib 0x00007fff20846f3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff207f8cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2082be49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x0000000112af049f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff207f8cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2082be49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x0000000112af049f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff207f8cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2082be49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x0000000112af049f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 4:
0 libsystem_kernel.dylib 0x00007fff207f8cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2082be49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x0000000112af049f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 5:
0 libsystem_kernel.dylib 0x00007fff207f8cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2082be49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x0000000112af049f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 6:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff207ff1c2 kevent64 + 10
1 QtWebEngineCore 0x00000001289fc5ca 0x124a9a000 + 66463178
2 QtWebEngineCore 0x00000001289fc4c7 0x124a9a000 + 66462919
3 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
4 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
5 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
6 QtWebEngineCore 0x000000012898284d 0x124a9a000 + 65964109
7 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
8 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
9 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 7:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x000000012898ed5f 0x124a9a000 + 66014559
4 QtWebEngineCore 0x000000012898f80c 0x124a9a000 + 66017292
5 QtWebEngineCore 0x000000012898f37d 0x124a9a000 + 66016125
6 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
7 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 8:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff207ff1c2 kevent64 + 10
1 QtWebEngineCore 0x00000001289fc5ca 0x124a9a000 + 66463178
2 QtWebEngineCore 0x00000001289fc4c7 0x124a9a000 + 66462919
3 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
4 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
5 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
6 QtWebEngineCore 0x00000001278c1e32 0x124a9a000 + 48397874
7 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
8 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
9 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x00000001289ca78f 0x124a9a000 + 66258831
4 QtWebEngineCore 0x0000000128900089 0x124a9a000 + 65429641
5 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
6 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
7 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
8 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
9 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
10 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 10:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x000000012898ed5f 0x124a9a000 + 66014559
4 QtWebEngineCore 0x000000012898f80c 0x124a9a000 + 66017292
5 QtWebEngineCore 0x000000012898f40d 0x124a9a000 + 66016269
6 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
7 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 11:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff207f8cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2082be49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x00000001289c28bb 0x124a9a000 + 66226363
3 QtWebEngineCore 0x000000012aa9355d 0x124a9a000 + 100635997
4 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
5 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 12:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x0000000128900028 0x124a9a000 + 65429544
4 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
5 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
6 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
7 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
8 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
9 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 13:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff207ff1c2 kevent64 + 10
1 QtWebEngineCore 0x00000001289fc5ca 0x124a9a000 + 66463178
2 QtWebEngineCore 0x00000001289fc4c7 0x124a9a000 + 66462919
3 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
4 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
5 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
6 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
7 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
8 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 14:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x00000001289ca78f 0x124a9a000 + 66258831
4 QtWebEngineCore 0x0000000128900089 0x124a9a000 + 65429641
5 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
6 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
7 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
8 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
9 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
10 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x00000001289ca78f 0x124a9a000 + 66258831
4 QtWebEngineCore 0x0000000128900089 0x124a9a000 + 65429641
5 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
6 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
7 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
8 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
9 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
10 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 16:: NetworkService
0 libsystem_kernel.dylib 0x00007fff207ff1c2 kevent64 + 10
1 QtWebEngineCore 0x00000001289fc5ca 0x124a9a000 + 66463178
2 QtWebEngineCore 0x00000001289fc4c7 0x124a9a000 + 66462919
3 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
4 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
5 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
6 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
7 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
8 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x00000001289ca78f 0x124a9a000 + 66258831
4 QtWebEngineCore 0x0000000128900089 0x124a9a000 + 65429641
5 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
6 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
7 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
8 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
9 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
10 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 18:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x000000012898ed5f 0x124a9a000 + 66014559
4 QtWebEngineCore 0x000000012898f80c 0x124a9a000 + 66017292
5 QtWebEngineCore 0x000000012898f46d 0x124a9a000 + 66016365
6 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
7 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 19:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x00000001289ca78f 0x124a9a000 + 66258831
4 QtWebEngineCore 0x0000000128900089 0x124a9a000 + 65429641
5 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
6 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
7 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
8 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
9 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
10 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 20:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff20923ecf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff209225af __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff209219bc CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff232b0bba _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 21:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x00000001289ca78f 0x124a9a000 + 66258831
4 QtWebEngineCore 0x0000000128900089 0x124a9a000 + 65429641
5 QtWebEngineCore 0x000000012897919c 0x124a9a000 + 65925532
6 QtWebEngineCore 0x0000000128930ff8 0x124a9a000 + 65630200
7 QtWebEngineCore 0x000000012899b458 0x124a9a000 + 66065496
8 QtWebEngineCore 0x000000012899b5ea 0x124a9a000 + 66065898
9 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
10 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 22:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x000000012898ed5f 0x124a9a000 + 66014559
4 QtWebEngineCore 0x000000012898f53a 0x124a9a000 + 66016570
5 QtWebEngineCore 0x000000012898f3ad 0x124a9a000 + 66016173
6 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
7 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 23:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x000000012898ed5f 0x124a9a000 + 66014559
4 QtWebEngineCore 0x000000012898f80c 0x124a9a000 + 66017292
5 QtWebEngineCore 0x000000012898f40d 0x124a9a000 + 66016269
6 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
7 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 24:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff207f62aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff207f661c mach_msg + 60
2 QtWebEngineCore 0x00000001289ca9c6 0x124a9a000 + 66259398
3 QtWebEngineCore 0x000000012898ed5f 0x124a9a000 + 66014559
4 QtWebEngineCore 0x000000012898f80c 0x124a9a000 + 66017292
5 QtWebEngineCore 0x000000012898f37d 0x124a9a000 + 66016125
6 QtWebEngineCore 0x00000001289c34a8 0x124a9a000 + 66229416
7 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 25:
0 libsystem_pthread.dylib 0x00007fff20827420 start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x00007fff20827420 start_wqthread + 0
Thread 27:
0 libsystem_kernel.dylib 0x00007fff207f8cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2082be49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010f5e179c PyThread_acquire_lock_timed + 700
3 org.python.python 0x000000010f63069f acquire_timed + 111
4 org.python.python 0x000000010f6307b0 lock_PyThread_acquire_lock + 48
5 org.python.python 0x000000010f4bb14e method_vectorcall_VARARGS_KEYWORDS + 350
6 org.python.python 0x000000010f58ae0c call_function + 732
7 org.python.python 0x000000010f58827e _PyEval_EvalFrameDefault + 25518
8 org.python.python 0x000000010f58bb03 _PyEval_EvalCode + 2611
9 org.python.python 0x000000010f4b2cb1 _PyFunction_Vectorcall + 289
10 org.python.python 0x000000010f58ae0c call_function + 732
11 org.python.python 0x000000010f58827e _PyEval_EvalFrameDefault + 25518
12 org.python.python 0x000000010f58bb03 _PyEval_EvalCode + 2611
13 org.python.python 0x000000010f4b2cb1 _PyFunction_Vectorcall + 289
14 org.python.python 0x000000010f58ae0c call_function + 732
15 org.python.python 0x000000010f58827e _PyEval_EvalFrameDefault + 25518
16 org.python.python 0x000000010f4b2d28 function_code_fastcall + 104
17 org.python.python 0x000000010f58ae0c call_function + 732
18 org.python.python 0x000000010f58827e _PyEval_EvalFrameDefault + 25518
19 org.python.python 0x000000010f4b2d28 function_code_fastcall + 104
20 org.python.python 0x000000010f58ae0c call_function + 732
21 org.python.python 0x000000010f58827e _PyEval_EvalFrameDefault + 25518
22 org.python.python 0x000000010f4b2d28 function_code_fastcall + 104
23 org.python.python 0x000000010f4b4db2 method_vectorcall + 274
24 org.python.python 0x000000010f630046 t_bootstrap + 70
25 org.python.python 0x000000010f5e12f9 pythread_wrapper + 25
26 libsystem_pthread.dylib 0x00007fff2082b8fc _pthread_start + 224
27 libsystem_pthread.dylib 0x00007fff20827443 thread_start + 15
Thread 28:
0 libsystem_pthread.dylib 0x00007fff20827420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011277ee00 rcx: 0x00007f9d15955a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007f9d15955a80 rsp: 0x00007f9d15955a58
r8: 0x00007f9d15955f48 r9: 0xf8491996ab27e31f r10: 0x000000011277ee00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff207fc91e rfl: 0x0000000000000246 cr2: 0x00007f9d15e845b0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
89 c3 4c 89 ff e8 7a 4e-00 00 eb 84 48 8b 05 11 ..L...zN....H...
4a 05 00 4c 8b 30 49 8b-04 24 48 8b 4d d8 48 8b J..L.0I..$H.M.H.
79 08 ff 90 b8 01 00 00-48 8d 35 87 03 05 00 31 y.......H.5....1
db 4c 89 f7 48 89 c2 31-c0 e8 32 dd 00 00 e9 4d .L..H..1..2....M
ff ff ff 90 55 48 89 e5-41 57 41 56 41 55 41 54 ....UH..AWAVAUAT
53 48 83 ec 48 48 89 fb-48 8b 7f 20 48 8b 47 08 SH..HH..H.. H.G.
[f6]40 30 02 75 1d 49 89-f6 48 8b 4b 10 48 8b 41 .@0.u.I..H.K.H.A /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/MacOS/ChimeraX
0x10f473000 - 0x10f6dbfff +org.python.python (3.9.11, [c] 2001-2021 Python Software Foundation. - 3.9.11) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
0x10f84d000 - 0x10f84ffff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x10f859000 - 0x10f85dfff +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x10f867000 - 0x10f86cfff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
0x10f876000 - 0x10f878fff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x10f882000 - 0x10f8b3fff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
0x10f8c5000 - 0x10f8c6fff +grp.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so
0x10f8d0000 - 0x10f8d5fff +_struct.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so
0x10f8e4000 - 0x10f8ecfff +math.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x10f8fa000 - 0x10f8fbfff +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
0x10f905000 - 0x10f906fff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
0x10f910000 - 0x10f914fff +_sha512.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so
0x10f91e000 - 0x10f91efff +_arrays.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/_arrays.cpython-39-darwin.so
0x10f925000 - 0x10f9c6fff +libarrays.dylib (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10f9ea000 - 0x10f9effff +_json.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x10f9f9000 - 0x10fdc0fff +_multiarray_umath.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x10ff05000 - 0x11001cfff +libgfortran.3.dylib (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x11008a000 - 0x1100c0fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x1100d4000 - 0x1100e9fff +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x1120f9000 - 0x112108fff +_datetime.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so
0x11211c000 - 0x112133fff +_pickle.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so
0x112146000 - 0x112159fff +_multiarray_tests.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
0x112173000 - 0x112175fff +_posixsubprocess.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
0x11217f000 - 0x112183fff +select.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so
0x11218d000 - 0x11219efff +_ctypes.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so
0x1121b7000 - 0x1121d2fff +_umath_linalg.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so
0x1121eb000 - 0x1121fefff +_pocketfft_internal.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so
0x11220a000 - 0x11227dfff +mtrand.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/mtrand.cpython-39-darwin.so
0x1122e0000 - 0x1122fffff +bit_generator.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/bit_generator.cpython-39-darwin.so
0x112322000 - 0x112355fff +_common.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_common.cpython-39-darwin.so
0x112374000 - 0x11237afff +_hashlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_hashlib.cpython-39-darwin.so
0x112389000 - 0x1123e2fff +libssl.1.1.dylib (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libssl.1.1.dylib
0x112414000 - 0x11241afff +_blake2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_blake2.cpython-39-darwin.so
0x112424000 - 0x112477fff +_bounded_integers.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_bounded_integers.cpython-39-darwin.so
0x1124a7000 - 0x1124b6fff +_mt19937.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_mt19937.cpython-39-darwin.so
0x1124c9000 - 0x1124d8fff +_philox.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_philox.cpython-39-darwin.so
0x1124ea000 - 0x1124f9fff +_pcg64.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_pcg64.cpython-39-darwin.so
0x11250d000 - 0x112514fff +_sfc64.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_sfc64.cpython-39-darwin.so
0x112525000 - 0x1125b4fff +_generator.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_generator.cpython-39-darwin.so
0x11261f000 - 0x11261ffff +_opcode.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_opcode.cpython-39-darwin.so
0x112629000 - 0x112647fff +_geometry.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/geometry/_geometry.cpython-39-darwin.so
0x1126a7000 - 0x112742fff dyld (852.2) /usr/lib/dyld
0x1127bf000 - 0x11644afff +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x11e704000 - 0x11e91bfff +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libcrypto.1.1.dylib
0x1209bb000 - 0x120b3efff +QtCore.abi3.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtCore.abi3.so
0x120d44000 - 0x12123ffff +QtCore (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore
0x1231e1000 - 0x1231f8fff +sip.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/sip.cpython-39-darwin.so
0x12320f000 - 0x1234befff +QtWidgets.abi3.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtWidgets.abi3.so
0x12381c000 - 0x123cdffff +QtWidgets (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtWidgets.framework/Versions/A/QtWidgets
0x123e3a000 - 0x1244b9fff +QtGui (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtGui.framework/Versions/A/QtGui
0x1245e5000 - 0x124670fff +QtDBus (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtDBus.framework/Versions/A/QtDBus
0x124695000 - 0x1247fcfff +QtGui.abi3.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtGui.abi3.so
0x1249d0000 - 0x1249dffff +QtWebEngineWidgets.abi3.so (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtWebEngineWidgets.abi3.so
0x1249f3000 - 0x124a06fff +QtWebEngineWidgets (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtWebEngineWidgets.framework/Versions/A/QtWebEngineWidgets
0x124a1f000 - 0x124a6afff +QtPrintSupport (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtPrintSupport.framework/Versions/A/QtPrintSupport
0x124a9a000 - 0x12e805fff +QtWebEngineCore (0) /Applications/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtWebEngineCore.framework/Versions/A/QtWebEngineCore
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0x7fff3db51000 - 0x7fff3ddacfff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3ddad000 - 0x7fff3dec3fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3dec4000 - 0x7fff3ded5fff com.apple.sidecar-ui (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e4f8000 - 0x7fff3e55afff com.apple.ImageCaptureCore (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e55b000 - 0x7fff3e580fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e75f000 - 0x7fff3e7cbfff com.apple.Safari.Core (16611 - 16611.3.10.1.16) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore
0x7fff3e7cc000 - 0x7fff3e92efff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e92f000 - 0x7fff3ec10fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3ec3c000 - 0x7fff3ed68fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3ed69000 - 0x7fff3f209fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3f20a000 - 0x7fff3f2f2fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff40039000 - 0x7fff400b6fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff411bd000 - 0x7fff411ecfff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff411ed000 - 0x7fff411f6fff com.apple.IOAccelMemoryInfo (1.0 - 1) /System/Library/PrivateFrameworks/IOAccelMemoryInfo.framework/Versions/A/IOAccelMemoryInfo
0x7fff41251000 - 0x7fff41254fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff41679000 - 0x7fff41697fff libCGInterfaces.dylib (544.5) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff42d17000 - 0x7fff43a77fff libfaceCore.dylib (4.3.1) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x7fff43a78000 - 0x7fff43b8bfff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x7fff43b8c000 - 0x7fff43ba4fff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff43ba5000 - 0x7fff43c04fff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x7fff43c05000 - 0x7fff43c1efff com.apple.SafariFoundation (16611 - 16611.3.10.1.16) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x7fff43c1f000 - 0x7fff43c25fff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x7fff43c26000 - 0x7fff43e99fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44702000 - 0x7fff44706fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff4607d000 - 0x7fff46080fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff4676c000 - 0x7fff46777fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47da2000 - 0x7fff47de3fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff48631000 - 0x7fff4864cfff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff5182a000 - 0x7fff51857fff com.apple.HelpData (2.3 - 201.1) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff51858000 - 0x7fff51872fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff51873000 - 0x7fff51912fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51b02000 - 0x7fff51b05fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff5419b000 - 0x7fff541d1fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff557c8000 - 0x7fff557cbfff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5df03000 - 0x7fff5e38efff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.5.13 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver
0x7fff5e38f000 - 0x7fff5edf2fff libSC.dylib (4.6.21) /System/Library/Extensions/AMDShared.bundle/Contents/PlugIns/libSC.dylib
0x7fff5f127000 - 0x7fff6010efff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.5.13 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver
0x7fff698c0000 - 0x7fff698c4fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bd0b000 - 0x7fff6bd11fff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bd12000 - 0x7fff6bd16fff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bd17000 - 0x7fff6bd26fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bd27000 - 0x7fff6bd29fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bd2a000 - 0x7fff6bd32fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bd33000 - 0x7fff6bd66fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bd67000 - 0x7fff6bda3fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bda4000 - 0x7fff6bf37fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bf38000 - 0x7fff6bf42fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bf43000 - 0x7fff6c0c0fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6c0c1000 - 0x7fff6c0e9fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d382000 - 0x7fff6d3dafff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6df04000 - 0x7fff6e11ffff com.apple.AMDMTLBronzeDriver (4.6.21 - 4.0.6) /System/Library/Extensions/AMDMTLBronzeDriver.bundle/Contents/MacOS/AMDMTLBronzeDriver
0x7fff6e284000 - 0x7fff6e2d3fff ATIRadeonX4000SCLib.dylib (4.6.21) /System/Library/Extensions/AMDRadeonX4000GLDriver.bundle/Contents/MacOS/ATIRadeonX4000SCLib.dylib
0x7fff6e484000 - 0x7fff6e48bfff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e48c000 - 0x7fff6e573fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6faf5000 - 0x7fff6fb07fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73e25000 - 0x7fff73e30fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff74046000 - 0x7fff7405efff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff7796e000 - 0x7fff77975fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=2.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.7G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 640K 5
Activity Tracing 256K 1
CG backing stores 3792K 6
CG image 796K 33
CoreAnimation 1052K 86
CoreGraphics 12K 2
CoreUI image data 5212K 40
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 1.9G 3764
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
Mach message 16K 3
OpenGL GLSL 384K 4
STACK GUARD 112K 28
Stack 172.7M 29
Stack Guard 56.0M 1
VM_ALLOCATE 270.0M 385
VM_ALLOCATE (reserved) 96.0M 1 reserved VM address space (unallocated)
__DATA 48.6M 642
__DATA_CONST 29.1M 325
__DATA_DIRTY 1726K 223
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 529.5M 172
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 677.4M 626
__UNICODE 588K 1
mapped file 300.6M 61
shared memory 3476K 23
=========== ======= =======
TOTAL 4.4G 6479
TOTAL, minus reserved VM space 4.0G 6479
System Profile:
Network Service: Wi-Fi, AirPort, en0
Boot Volume File System Type: apfs
Memory Module: BANK 0/ChannelA-DIMM0, 8 GB, DDR4, 2400 MHz, SK Hynix, -
Memory Module: BANK 2/ChannelB-DIMM0, 8 GB, DDR4, 2400 MHz, SK Hynix, -
USB Device: USB 3.1 Bus
USB Device: Apple T2 Bus
USB Device: Touch Bar Backlight
USB Device: Touch Bar Display
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Headset
USB Device: Ambient Light Sensor
USB Device: FaceTime HD Camera (Built-in)
USB Device: Apple T2 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 47.5
Thunderbolt Bus: MacBook Pro, Apple Inc., 47.5
Model: MacBookPro15,1, BootROM 1731.140.2.0.0 (iBridge: 19.16.16064.0.0,0), 6 processors, 6-Core Intel Core i7, 2.2 GHz, 16 GB, SMC
Graphics: kHW_IntelUHDGraphics630Item, Intel UHD Graphics 630, spdisplays_builtin
Graphics: kHW_AMDRadeonPro555XItem, Radeon Pro 555X, spdisplays_pcie_device, 4 GB
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Aug 10 2021 19:55:28 version 9.30.444.18.32.5.71 FWID 01-93db3422
Bluetooth: Version 8.0.5d7, 3 services, 27 devices, 1 incoming serial ports
===== Log before crash start =====
UCSF ChimeraX version: 1.4rc202206032339 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/das/WORK/CryoEM/Translocon/20220314_10uM-
> CK147/132K_Ctf_Polish_2.78A/run_class001.mrc
Opened run_class001.mrc as #1, grid size 352,352,352, pixel 1.23, shown at
level 0.034, step 2, values float32
> volume #1 level 0.00979
> volume #1 level 0.01165
> surface dust #1 size 12.3
> ui mousemode right zoom
> open /Users/das/WORK/CryoEM/Translocon/20220314_10uM-
> CK147/Sec61_147-fit2.pdb
Summary of feedback from opening
/Users/das/WORK/CryoEM/Translocon/20220314_10uM-CK147/Sec61_147-fit2.pdb
---
warning | Start residue of secondary structure not found: HELIX 1 1 PHE A 5
ILE A 15 1 11
Sec61_147-fit2.pdb title:
Alphafold monomer V2.0 prediction for protein transport protein SEC61 subunit
α isoform 1 (P38377) [more info...]
Chain information for Sec61_147-fit2.pdb #2
---
Chain | Description | UniProt
A | protein transport protein SEC61 subunit α isoform 1 | S61A1_CANLF
B | No description available |
Non-standard residues in Sec61_147-fit2.pdb #2
---
LIG — (LIG)
> transparency 50
> ui tool show "Side View"
> set bgColor white
> select ::name="LIG"
42 atoms, 45 bonds, 1 residue, 1 model selected
> view sel
> open /Users/das/WORK/CryoEM/Translocon/20220314_10uM-
> CK147/132K_Ctf_Polish_2.78A/postprocess.mrc
Opened postprocess.mrc as #3, grid size 352,352,352, pixel 1.23, shown at
level 0.0365, step 2, values float32
> volume #3 level 0.01111
> surface dust #3 size 12.3
> transparency #3.1 50
> view sel
> volume #3 style mesh
> volume #3 style image
> volume #3 style surface
> volume #3 style image colorMode opaque8 showOutlineBox true imageMode "box
> faces"
> volume #3 colorMode auto8 imageMode "tilted slab" tiltedSlabAxis
> 0.3191,-0.3276,-0.8893 tiltedSlabOffset -214.8 tiltedSlabSpacing 1.23
> tiltedSlabPlaneCount 35
> volume #3 region 0,0,0,351,351,351 step 1 colorMode opaque8 orthoplanes xyz
> positionPlanes 175,175,175 imageMode orthoplanes
> volume #3 style surface
> volume #3 style image maximumIntensityProjection true colorMode auto8
> imageMode "full region"
> volume #3 style surface maximumIntensityProjection false
> select add #2
4004 atoms, 4092 bonds, 512 residues, 1 model selected
> select subtract #2
Nothing selected
> hide #!3 models
> show #!3 models
> color #3 #93fffb80 models
> color #3 #ffc5c980 models
> color #3 #fffda680 models
> color #3 #ddc4ff80 models
> color #3 #ff9cd280 models
> color #3 #ffb2bd80 models
> color #3 #ffdbd180 models
> color #3 #ffb2b180 models
> hide #!3 models
> show #!3 models
> volume #3 step 2
> open /Users/das/WORK/CryoEM/Translocon/20220314_10uM-
> CK147/132K_Ctf_Polish_2.78A/relion_locres.mrc
Opened relion_locres.mrc as #4, grid size 352,352,352, pixel 1.23, shown at
level 33.6, step 2, values float32
> close #1
> ui tool show "Surface Color"
> color sample #3.1 map #4 palette
> 2.5,#0000ff:3,#0091ff:3.5,#00ffda:4,#00ff48:4.5,#48ff00:5,#daff00:5.5,#ff9100:6,#ff0000
Map values for surface "surface": minimum 2.522, mean 6.469, maximum 46.68
Map values for surface "cap far": minimum 2.522, mean 3.294, maximum 10.3
Map values for surface "cap near": minimum 2.541, mean 3.187, maximum 9.414
> volume #3 step 1
> volume #3 level 0.012
> volume #3 change image level -0.006153,0 level 0.03644,0.8 level 0.1904,1
> volume #3 level 0.013
> select ::name="LIG"
42 atoms, 45 bonds, 1 residue, 1 model selected
> color sel magenta
> color sel byhetero
> select clear
> volume #3 level 0.014
> volume #3 region 0,0,0,351,351,351
> ui mousemode right zoom
> ui tool show "Side View"
> hide #!3 models
> show #!3 models
> hide #!3 models
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4rc202206032339 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/das/WORK/CryoEM/Translocon/20220427_Transolocon-
> only/Phenix/6mte_ref1fit_res3_real_space_refined_018-coot-4_trapABD_Chim_real_space_refined_029.pdb
Chain information for
6mte_ref1fit_res3_real_space_refined_018-coot-4_trapABD_Chim_real_space_refined_029.pdb
#1
---
Chain | Description
5 | No description available
7 | No description available
8 | No description available
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
OpenGL version: 4.1 ATI-4.6.21
OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,1
Processor Name: 6-Core Intel Core i7
Processor Speed: 2.2 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 9 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1731.140.2.0.0 (iBridge: 19.16.16064.0.0,0)
Software:
System Software Overview:
System Version: macOS 11.6.8 (20G730)
Kernel Version: Darwin 20.6.0
Time since boot: 5 days 11:59
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0000
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Family: Supported, Metal GPUFamily macOS 2
Radeon Pro 555X:
Chipset Model: Radeon Pro 555X
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x67ef
Revision ID: 0x00e3
ROM Revision: 113-C980AL-075
VBIOS Version: 113-C97501P-005
EFI Driver Version: 01.A1.075
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4rc202206032339
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → UI |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in color button code |
comment:2 by , 3 years ago
| Status: | accepted → feedback |
|---|
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Hi Kalyan,
--Eric