Changes between Initial Version and Version 1 of Ticket #7375


Ignore:
Timestamp:
Aug 3, 2022, 10:18:46 AM (3 years ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #7375

    • Property Cc Tom Goddard added
    • Property Component Unassigned → Core
    • Property Owner set to Eric Pettersen
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → accepted
    • Property Summary ChimeraX bug report submission → Unknown crash after "volume level" command

  • Ticket #7375 – Description

    initial v1  
    66Last time you used ChimeraX it crashed.
    77Please describe steps that led to the crash here.
     8
     9
     10{"app_name":"ChimeraX","timestamp":"2022-08-02 15:42:40.00 -0700","app_version":"","slice_uuid":"9596eff5-d2be-396c-9c4e-6177235c3dae","build_version":"","platform":1,"share_with_app_devs":0,"is_first_party":1,"bug_type":"309","os_version":"macOS 12.4 (21F79)","incident_id":"B7075888-9B1B-495F-B5A2-0EEFF2B82670","name":"ChimeraX"}
     11{
     12  "uptime" : 2000000,
     13  "procLaunch" : "2022-08-02 12:04:19.7252 -0700",
     14  "procRole" : "Background",
     15  "version" : 2,
     16  "userID" : 503,
     17  "deployVersion" : 210,
     18  "modelCode" : "MacBookPro18,3",
     19  "procStartAbsTime" : 49983165190023,
     20  "coalitionID" : 245015,
     21  "osVersion" : {
     22    "train" : "macOS 12.4",
     23    "build" : "21F79",
     24    "releaseType" : "User"
     25  },
     26  "captureTime" : "2022-08-02 15:42:40.0416 -0700",
     27  "incident" : "B7075888-9B1B-495F-B5A2-0EEFF2B82670",
     28  "bug_type" : "309",
     29  "pid" : 28173,
     30  "procExitAbsTime" : 50297570605741,
     31  "translated" : true,
     32  "cpuType" : "X86-64",
     33  "procName" : "ChimeraX",
     34  "procPath" : "\/private\/var\/folders\/*\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
     35  "parentProc" : "launchd",
     36  "parentPid" : 1,
     37  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
     38  "crashReporterKey" : "02260CFE-E748-C866-2CE9-0F87C0E56691",
     39  "wakeTime" : 109762,
     40  "sleepWakeUUID" : "DFC7A625-5573-4107-9C47-0977CF777EBB",
     41  "sip" : "enabled",
     42  "vmRegionInfo" : "0x1094c71d0 is in 0x1092c8000-0x109531000;  bytes after start: 2093520  bytes before end: 433711\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      Rosetta Generic             1092c7000-1092c8000    [    4K] rw-\/rwx SM=PRV  \n--->  mapped file                 1092c8000-109531000    [ 2468K] r-x\/rwx SM=COW  ...t_id=6b1ee1c1\n      mapped file                 109531000-10956b000    [  232K] rw-\/rwx SM=COW  ...t_id=69f380c1",
     43  "isCorpse" : 1,
     44  "exception" : {"codes":"0x000000000000000a, 0x00000001094c71d0","rawCodes":[10,4450972112],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_MEMORY_ERROR at 0x00000001094c71d0"},
     45  "termination" : {"flags":0,"code":10,"namespace":"SIGNAL","indicator":"Bus error: 10","byProc":"exc handler","byPid":28173},
     46  "ktriageinfo" : "VM - Object is not alive\n",
     47  "vmregioninfo" : "0x1094c71d0 is in 0x1092c8000-0x109531000;  bytes after start: 2093520  bytes before end: 433711\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      Rosetta Generic             1092c7000-1092c8000    [    4K] rw-\/rwx SM=PRV  \n--->  mapped file                 1092c8000-109531000    [ 2468K] r-x\/rwx SM=COW  ...t_id=6b1ee1c1\n      mapped file                 109531000-10956b000    [  232K] rw-\/rwx SM=COW  ...t_id=69f380c1",
     48  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
     49  "faultingThread" : 0,
     50  "threads" : 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     74    "uuid" : "9c8908f2-e5e0-35b7-9f41-fdf8d7476d8b",
     75    "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
     76    "name" : "CoreFoundation",
     77    "CFBundleVersion" : "1863"
     78  },
     79  {
     80    "source" : "P",
     81    "arch" : "x86_64",
     82    "base" : 8601579520,
     83    "size" : 442368,
     84    "uuid" : "b70ce1ec-b902-3852-8268-05de00bfa8d5",
     85    "path" : "\/usr\/lib\/dyld",
     86    "name" : "dyld"
     87  },
     88  {
     89    "source" : "P",
     90    "arch" : "arm64",
     91    "base" : 140703126859776,
     92    "size" : 196608,
     93    "uuid" : "0ee8ce32-639c-316a-9551-dab9a2e0c8a5",
     94    "path" : "\/usr\/libexec\/rosetta\/runtime",
     95    "name" : "runtime"
     96  },
     97  {
     98    "source" : "P",
     99    "arch" : "x86_64",
     100    "base" : 140703608647680,
     101    "size" : 229376,
     102    "uuid" : "61711d11-e776-3bc3-b9a2-6f9f37cb8499",
     103    "path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
     104    "name" : "libsystem_kernel.dylib"
     105  },
     106  {
     107    "source" : "P",
     108    "arch" : "x86_64",
     109    "base" : 140703608877056,
     110    "size" : 49152,
     111    "uuid" : "bc574849-1aae-31e7-b350-916dda999d97",
     112    "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
     113    "name" : "libsystem_pthread.dylib"
     114  }
     115],
     116  "sharedCache" : {
     117  "base" : 140703605620736,
     118  "size" : 15220686848,
     119  "uuid" : "53b6853f-0bc3-33f5-be72-1aca3a188ff8"
     120},
     121  "vmSummary" : "ReadOnly portion of Libraries: Total=205.8M resident=0K(0%) swapped_out_or_unallocated=205.8M(100%)\nWritable regions: Total=2.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.9G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               128K        1 \nActivity Tracing                   256K        1 \nCG backing stores                 6400K        8 \nCG image                           152K       14 \nColorSync                          232K       27 \nCoreAnimation                      152K       12 \nCoreGraphics                        16K        3 \nCoreUI image data                 3960K       27 \nFoundation                          36K        2 \nKernel Alloc Once                    8K        1 \nMALLOC                             1.1G      163 \nMALLOC guard page                  192K        8 \nMALLOC_MEDIUM (reserved)         736.0M        8         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)\nMach message                        16K        4 \nOpenGL GLSL                        384K        4 \nRosetta Arena                     4096K        2 \nRosetta Generic                   1504K      373 \nRosetta IndirectBranch            2048K        1 \nRosetta JIT                      128.0M        1 \nRosetta Return Stack               640K       64 \nRosetta Thread Context             640K       64 \nSTACK GUARD                         28K        7 \nStack                            143.6M       32 \nStack Guard                       56.1M       25 \nVM_ALLOCATE                      268.3M      225 \nVM_ALLOCATE (reserved)           160.1M       15         reserved VM address space (unallocated)\n__DATA                             355K       45 \n__DATA_CONST                      3033K       40 \n__DATA_DIRTY                        79K       24 \n__LINKEDIT                       192.9M        7 \n__OBJC_RO                         82.7M        1 \n__OBJC_RW                         3200K        2 \n__TEXT                            13.0M       50 \n__UNICODE                          592K        1 \ndyld private memory               1184K        3 \nmapped file                        6.6G      948 \nshared memory                     5352K       35 \nunshared pmap                     11.8M        8 \n===========                     =======  ======= \nTOTAL                              9.9G     2257 \nTOTAL, minus reserved VM space     8.6G     2257 \n",
     122  "legacyInfo" : {
     123  "threadTriggered" : {
     124    "name" : "CrBrowserMain",
     125    "queue" : "com.apple.main-thread"
     126  }
     127},
     128  "trialInfo" : {
     129  "rollouts" : [
     130    {
     131      "rolloutId" : "60356660bbe37970735c5624",
     132      "factorPackIds" : {
     133
     134      },
     135      "deploymentId" : 240000027
     136    },
     137    {
     138      "rolloutId" : "5fb4245a1bbfe8005e33a1e1",
     139      "factorPackIds" : {
     140
     141      },
     142      "deploymentId" : 240000015
     143    }
     144  ],
     145  "experiments" : [
     146
     147  ]
     148}
     149}
     150===== Log before crash start =====
     151Startup Messages 
     152--- 
     153note | available bundle cache has not been initialized yet 
     154 
     155UCSF ChimeraX version: 1.4 (2022-06-03) 
     156© 2016-2022 Regents of the University of California. All rights reserved. 
     157How to cite UCSF ChimeraX 
     158
     159> open "/Users/rflores/Downloads/cryosparc_P117_J24_005_volume_map (2).mrc"
     160
     161Opened cryosparc_P117_J24_005_volume_map (2).mrc as #1, grid size 300,300,300,
     162pixel 0.834, shown at level 0.208, step 2, values float32 
     163
     164> volume flip #1
     165
     166Opened cryosparc_P117_J24_005_volume_map (2).mrc z flip as #2, grid size
     167300,300,300, pixel 0.834, shown at step 1, values float32 
     168
     169> volume #2 level 0.1736
     170
     171> ui windowfill toggle
     172
     173> open emdb:8697
     174
     175Opened emdb 8697 as #3, grid size 256,256,256, pixel 1, shown at level 0.0268,
     176step 1, values float32 
     177
     178> select add #2
     179
     1802 models selected 
     181
     182> ui mousemode right "translate selected models"
     183
     184> show #!2 models
     185
     186> select subtract #2
     187
     188Nothing selected 
     189
     190> select add #3
     191
     1922 models selected 
     193
     194> view matrix models #3,1,0,0,21.603,0,1,0,48.691,0,0,1,105.16
     195
     196> view matrix models #3,1,0,0,-4.3285,0,1,0,49.812,0,0,1,113.67
     197
     198> view matrix models
     199> #3,0.1257,0.98776,0.092389,-31.532,-0.53668,-0.010622,0.84372,138.13,0.83437,-0.15564,0.52877,88.516
     200
     201> view matrix models
     202> #3,-0.37709,0.31653,0.87041,17.642,0.80801,-0.34691,0.47621,58.047,0.45269,0.88287,-0.12494,88.491
     203
     204> view matrix models
     205> #3,-0.45989,0.39804,0.79377,27.594,0.76999,-0.26648,0.57975,39.272,0.44229,0.87781,-0.18393,98.048
     206
     207> view matrix models
     208> #3,-0.45989,0.39804,0.79377,23.772,0.76999,-0.26648,0.57975,-15.957,0.44229,0.87781,-0.18393,-18.31
     209
     210> view matrix models
     211> #3,-0.45989,0.39804,0.79377,22.477,0.76999,-0.26648,0.57975,-14.194,0.44229,0.87781,-0.18393,-20.769
     212
     213> view matrix models
     214> #3,-0.45989,0.39804,0.79377,23.498,0.76999,-0.26648,0.57975,-20.231,0.44229,0.87781,-0.18393,-23.506
     215
     216> view matrix models
     217> #3,-0.45989,0.39804,0.79377,22.566,0.76999,-0.26648,0.57975,-19.027,0.44229,0.87781,-0.18393,-25.861
     218
     219> view matrix models
     220> #3,-0.45989,0.39804,0.79377,22.666,0.76999,-0.26648,0.57975,-18,0.44229,0.87781,-0.18393,-22.129
     221
     222> view matrix models
     223> #3,-0.24606,0.48988,0.83634,-21.615,0.89397,-0.21871,0.39112,-15.517,0.37452,0.84391,-0.38412,16.549
     224
     225> view matrix models
     226> #3,-0.25638,0.098565,0.96154,13.509,0.8776,-0.39316,0.2743,23.853,0.40508,0.91417,0.014299,-47.573
     227
     228> view matrix models
     229> #3,-0.63331,-0.20262,0.7469,127.3,0.6836,-0.59888,0.41717,56.281,0.36278,0.77478,0.51779,-89.241
     230
     231> view matrix models
     232> #3,-0.39672,0.48729,0.77792,5.3177,0.75594,-0.30732,0.57802,-10.788,0.52073,0.81738,-0.24644,-16.306
     233
     234> fitmap #3 inMap #2
     235
     236Fit map emdb 8697 in map cryosparc_P117_J24_005_volume_map (2).mrc z flip
     237using 167649 points 
     238correlation = 0.6051, correlation about mean = 0.01272, overlap = 765.3 
     239steps = 112, shift = 8.04, angle = 10.3 degrees 
     240 
     241Position of emdb 8697 (#3) relative to cryosparc_P117_J24_005_volume_map
     242(2).mrc z flip (#2) coordinates: 
     243Matrix rotation and translation 
     244-0.50973133 0.37292178 0.77530853 42.03747489 
     2450.69424845 -0.35395134 0.62668775 -3.64502823 
     2460.50812701 0.85769913 -0.07848028 -40.66860054 
     247Axis 0.48379686 0.55954638 0.67294016 
     248Axis point 35.50899958 19.26350229 0.00000000 
     249Rotation angle (degrees) 166.18732265 
     250Shift along axis -9.06949861 
     251 
     252
     253> select subtract #3
     254
     255Nothing selected 
     256
     257> volume #2 level 0.344
     258
     259> volume #2 level 0.2188
     260
     261> ui windowfill toggle
     262
     263> transparency #2.1#3.1 50
     264
     265> transparency #2.1#3.1 0
     266
     267> open "/Users/rflores/Downloads/cryosparc_P117_J23_004_volume_map (1).mrc"
     268
     269Opened cryosparc_P117_J23_004_volume_map (1).mrc as #4, grid size 300,300,300,
     270pixel 0.834, shown at level 0.203, step 2, values float32 
     271
     272> volume #4 level 0.1725
     273
     274> volume #4 level 0.1198
     275
     276> open "/Users/rflores/Downloads/cryosparc_P117_J25_004_volume_map (1).mrc"
     277
     278Opened cryosparc_P117_J25_004_volume_map (1).mrc as #5, grid size 300,300,300,
     279pixel 0.834, shown at level 0.211, step 2, values float32 
     280
     281> volume #5 level 0.1709
     282
     283> volume flip #5
     284
     285Opened cryosparc_P117_J25_004_volume_map (1).mrc z flip as #6, grid size
     286300,300,300, pixel 0.834, shown at step 1, values float32 
     287
     288> volume #6 level 0.1247
     289
     290> volume #2 level 0.1572
     291
     292> volume #3 level 0.01093
     293
     294
     295===== Log before crash end =====
     296
     297Log:
     298UCSF ChimeraX version: 1.3 (2021-12-08) 
     299© 2016-2021 Regents of the University of California. All rights reserved. 
     300How to cite UCSF ChimeraX 
     301
     302
     303
     304
     305OpenGL version: 4.1 Metal - 76.3
     306OpenGL renderer: Apple M1 Pro
     307OpenGL vendor: AppleHardware:
     308
     309    Hardware Overview:
     310
     311      Model Name: MacBook Pro
     312      Model Identifier: MacBookPro18,3
     313      Processor Name: Unknown
     314      Processor Speed: 2.4 GHz
     315      Number of Processors: 1
     316      Total Number of Cores: 8
     317      L2 Cache: 16 MB
     318      Memory: 32 GB
     319
     320Software:
     321
     322    System Software Overview:
     323
     324      System Version: macOS 12.4 (21F79)
     325      Kernel Version: Darwin 21.5.0
     326      Time since boot: 32 days 4:04
     327
     328Graphics/Displays:
     329
     330    Apple M1 Pro:
     331
     332      Chipset Model: Apple M1 Pro
     333      Type: GPU
     334      Bus: Built-In
     335      Total Number of Cores: 14
     336      Vendor: Apple (0x106b)
     337      Metal Family: Supported, Metal GPUFamily Apple 7
     338      Displays:
     339        Color LCD:
     340          Display Type: Built-in Liquid Retina XDR Display
     341          Resolution: 3024 x 1964 Retina
     342          Main Display: Yes
     343          Mirror: Off
     344          Online: Yes
     345          Automatically Adjust Brightness: Yes
     346          Connection Type: Internal
     347        LG UltraFine:
     348          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
     349          UI Looks like: 1920 x 1080 @ 60.00Hz
     350          Mirror: Off
     351          Online: Yes
     352          Automatically Adjust Brightness: Yes
     353
     354Locale: (None, 'UTF-8')
     355PyQt5 5.15.2, Qt 5.15.2
     356Installed Packages:
     357    alabaster: 0.7.12
     358    appdirs: 1.4.4
     359    appnope: 0.1.2
     360    Babel: 2.9.1
     361    backcall: 0.2.0
     362    blockdiag: 2.0.1
     363    certifi: 2021.5.30
     364    cftime: 1.5.1.1
     365    charset-normalizer: 2.0.9
     366    ChimeraX-AddCharge: 1.2.2
     367    ChimeraX-AddH: 2.1.11
     368    ChimeraX-AlignmentAlgorithms: 2.0
     369    ChimeraX-AlignmentHdrs: 3.2
     370    ChimeraX-AlignmentMatrices: 2.0
     371    ChimeraX-Alignments: 2.2.3
     372    ChimeraX-AlphaFold: 1.0
     373    ChimeraX-AltlocExplorer: 1.0.1
     374    ChimeraX-AmberInfo: 1.0
     375    ChimeraX-Arrays: 1.0
     376    ChimeraX-Atomic: 1.31
     377    ChimeraX-AtomicLibrary: 4.2
     378    ChimeraX-AtomSearch: 2.0
     379    ChimeraX-AtomSearchLibrary: 1.0
     380    ChimeraX-AxesPlanes: 2.0
     381    ChimeraX-BasicActions: 1.1
     382    ChimeraX-BILD: 1.0
     383    ChimeraX-BlastProtein: 2.0
     384    ChimeraX-BondRot: 2.0
     385    ChimeraX-BugReporter: 1.0
     386    ChimeraX-BuildStructure: 2.6.1
     387    ChimeraX-Bumps: 1.0
     388    ChimeraX-BundleBuilder: 1.1
     389    ChimeraX-ButtonPanel: 1.0
     390    ChimeraX-CageBuilder: 1.0
     391    ChimeraX-CellPack: 1.0
     392    ChimeraX-Centroids: 1.2
     393    ChimeraX-ChemGroup: 2.0
     394    ChimeraX-Clashes: 2.2.2
     395    ChimeraX-ColorActions: 1.0
     396    ChimeraX-ColorGlobe: 1.0
     397    ChimeraX-ColorKey: 1.5
     398    ChimeraX-CommandLine: 1.1.5
     399    ChimeraX-ConnectStructure: 2.0
     400    ChimeraX-Contacts: 1.0
     401    ChimeraX-Core: 1.3
     402    ChimeraX-CoreFormats: 1.1
     403    ChimeraX-coulombic: 1.3.2
     404    ChimeraX-Crosslinks: 1.0
     405    ChimeraX-Crystal: 1.0
     406    ChimeraX-CrystalContacts: 1.0
     407    ChimeraX-DataFormats: 1.2.2
     408    ChimeraX-Dicom: 1.0
     409    ChimeraX-DistMonitor: 1.1.5
     410    ChimeraX-DistUI: 1.0
     411    ChimeraX-Dssp: 2.0
     412    ChimeraX-EMDB-SFF: 1.0
     413    ChimeraX-ExperimentalCommands: 1.0
     414    ChimeraX-FileHistory: 1.0
     415    ChimeraX-FunctionKey: 1.0
     416    ChimeraX-Geometry: 1.1
     417    ChimeraX-gltf: 1.0
     418    ChimeraX-Graphics: 1.1
     419    ChimeraX-Hbonds: 2.1.2
     420    ChimeraX-Help: 1.2
     421    ChimeraX-HKCage: 1.3
     422    ChimeraX-IHM: 1.1
     423    ChimeraX-ImageFormats: 1.2
     424    ChimeraX-IMOD: 1.0
     425    ChimeraX-IO: 1.0.1
     426    ChimeraX-ItemsInspection: 1.0
     427    ChimeraX-Label: 1.1
     428    ChimeraX-ListInfo: 1.1.1
     429    ChimeraX-Log: 1.1.4
     430    ChimeraX-LookingGlass: 1.1
     431    ChimeraX-Maestro: 1.8.1
     432    ChimeraX-Map: 1.1
     433    ChimeraX-MapData: 2.0
     434    ChimeraX-MapEraser: 1.0
     435    ChimeraX-MapFilter: 2.0
     436    ChimeraX-MapFit: 2.0
     437    ChimeraX-MapSeries: 2.1
     438    ChimeraX-Markers: 1.0
     439    ChimeraX-Mask: 1.0
     440    ChimeraX-MatchMaker: 2.0.4
     441    ChimeraX-MDcrds: 2.6
     442    ChimeraX-MedicalToolbar: 1.0.1
     443    ChimeraX-Meeting: 1.0
     444    ChimeraX-MLP: 1.1
     445    ChimeraX-mmCIF: 2.4
     446    ChimeraX-MMTF: 2.1
     447    ChimeraX-Modeller: 1.2.6
     448    ChimeraX-ModelPanel: 1.2.1
     449    ChimeraX-ModelSeries: 1.0
     450    ChimeraX-Mol2: 2.0
     451    ChimeraX-Morph: 1.0
     452    ChimeraX-MouseModes: 1.1
     453    ChimeraX-Movie: 1.0
     454    ChimeraX-Neuron: 1.0
     455    ChimeraX-Nucleotides: 2.0.2
     456    ChimeraX-OpenCommand: 1.7
     457    ChimeraX-PDB: 2.6.5
     458    ChimeraX-PDBBio: 1.0
     459    ChimeraX-PDBLibrary: 1.0.2
     460    ChimeraX-PDBMatrices: 1.0
     461    ChimeraX-PickBlobs: 1.0
     462    ChimeraX-Positions: 1.0
     463    ChimeraX-PresetMgr: 1.0.1
     464    ChimeraX-PubChem: 2.1
     465    ChimeraX-ReadPbonds: 1.0.1
     466    ChimeraX-Registration: 1.1
     467    ChimeraX-RemoteControl: 1.0
     468    ChimeraX-ResidueFit: 1.0
     469    ChimeraX-RestServer: 1.1
     470    ChimeraX-RNALayout: 1.0
     471    ChimeraX-RotamerLibMgr: 2.0.1
     472    ChimeraX-RotamerLibsDunbrack: 2.0
     473    ChimeraX-RotamerLibsDynameomics: 2.0
     474    ChimeraX-RotamerLibsRichardson: 2.0
     475    ChimeraX-SaveCommand: 1.5
     476    ChimeraX-SchemeMgr: 1.0
     477    ChimeraX-SDF: 2.0
     478    ChimeraX-Segger: 1.0
     479    ChimeraX-Segment: 1.0
     480    ChimeraX-SelInspector: 1.0
     481    ChimeraX-SeqView: 2.4.6
     482    ChimeraX-Shape: 1.0.1
     483    ChimeraX-Shell: 1.0
     484    ChimeraX-Shortcuts: 1.1
     485    ChimeraX-ShowAttr: 1.0
     486    ChimeraX-ShowSequences: 1.0
     487    ChimeraX-SideView: 1.0
     488    ChimeraX-Smiles: 2.1
     489    ChimeraX-SmoothLines: 1.0
     490    ChimeraX-SpaceNavigator: 1.0
     491    ChimeraX-StdCommands: 1.6.1
     492    ChimeraX-STL: 1.0
     493    ChimeraX-Storm: 1.0
     494    ChimeraX-Struts: 1.0
     495    ChimeraX-Surface: 1.0
     496    ChimeraX-SwapAA: 2.0
     497    ChimeraX-SwapRes: 2.1
     498    ChimeraX-TapeMeasure: 1.0
     499    ChimeraX-Test: 1.0
     500    ChimeraX-Toolbar: 1.1
     501    ChimeraX-ToolshedUtils: 1.2
     502    ChimeraX-Tug: 1.0
     503    ChimeraX-UI: 1.13.7
     504    ChimeraX-uniprot: 2.2
     505    ChimeraX-UnitCell: 1.0
     506    ChimeraX-ViewDockX: 1.0.1
     507    ChimeraX-VIPERdb: 1.0
     508    ChimeraX-Vive: 1.1
     509    ChimeraX-VolumeMenu: 1.0
     510    ChimeraX-VTK: 1.0
     511    ChimeraX-WavefrontOBJ: 1.0
     512    ChimeraX-WebCam: 1.0
     513    ChimeraX-WebServices: 1.0
     514    ChimeraX-Zone: 1.0
     515    colorama: 0.4.4
     516    cxservices: 1.1
     517    cycler: 0.11.0
     518    Cython: 0.29.24
     519    decorator: 5.1.0
     520    docutils: 0.17.1
     521    filelock: 3.0.12
     522    funcparserlib: 0.3.6
     523    grako: 3.16.5
     524    h5py: 3.6.0
     525    html2text: 2020.1.16
     526    idna: 3.3
     527    ihm: 0.21
     528    imagecodecs: 2021.4.28
     529    imagesize: 1.3.0
     530    ipykernel: 5.5.5
     531    ipython: 7.23.1
     532    ipython-genutils: 0.2.0
     533    jedi: 0.18.0
     534    Jinja2: 3.0.1
     535    jupyter-client: 6.1.12
     536    jupyter-core: 4.9.1
     537    kiwisolver: 1.3.2
     538    lxml: 4.6.3
     539    lz4: 3.1.3
     540    MarkupSafe: 2.0.1
     541    matplotlib: 3.4.3
     542    matplotlib-inline: 0.1.3
     543    msgpack: 1.0.2
     544    netCDF4: 1.5.7
     545    networkx: 2.6.3
     546    numexpr: 2.8.0
     547    numpy: 1.21.2
     548    openvr: 1.16.801
     549    packaging: 21.0
     550    ParmEd: 3.2.0
     551    parso: 0.8.3
     552    pexpect: 4.8.0
     553    pickleshare: 0.7.5
     554    Pillow: 8.3.2
     555    pip: 21.2.4
     556    pkginfo: 1.7.1
     557    prompt-toolkit: 3.0.23
     558    psutil: 5.8.0
     559    ptyprocess: 0.7.0
     560    pycollada: 0.7.1
     561    pydicom: 2.1.2
     562    Pygments: 2.10.0
     563    PyOpenGL: 3.1.5
     564    PyOpenGL-accelerate: 3.1.5
     565    pyparsing: 3.0.6
     566    PyQt5-commercial: 5.15.2
     567    PyQt5-sip: 12.8.1
     568    PyQtWebEngine-commercial: 5.15.2
     569    python-dateutil: 2.8.2
     570    pytz: 2021.3
     571    pyzmq: 22.3.0
     572    qtconsole: 5.1.1
     573    QtPy: 1.11.3
     574    RandomWords: 0.3.0
     575    requests: 2.26.0
     576    scipy: 1.7.1
     577    setuptools: 57.5.0
     578    sfftk-rw: 0.7.1
     579    six: 1.16.0
     580    snowballstemmer: 2.2.0
     581    sortedcontainers: 2.4.0
     582    Sphinx: 4.2.0
     583    sphinx-autodoc-typehints: 1.12.0
     584    sphinxcontrib-applehelp: 1.0.2
     585    sphinxcontrib-blockdiag: 2.0.0
     586    sphinxcontrib-devhelp: 1.0.2
     587    sphinxcontrib-htmlhelp: 2.0.0
     588    sphinxcontrib-jsmath: 1.0.1
     589    sphinxcontrib-qthelp: 1.0.3
     590    sphinxcontrib-serializinghtml: 1.1.5
     591    suds-jurko: 0.6
     592    tifffile: 2021.4.8
     593    tinyarray: 1.2.3
     594    tornado: 6.1
     595    traitlets: 5.1.1
     596    urllib3: 1.26.7
     597    wcwidth: 0.2.5
     598    webcolors: 1.11.1
     599    wheel: 0.37.0
     600    wheel-filename: 1.3.0
     601
     602}}}