Opened 3 years ago

Closed 3 years ago

Last modified 3 years ago

#7375 closed defect (can't reproduce)

Unknown crash after "volume level" command

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by pett)

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.


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{
  "uptime" : 2000000,
  "procLaunch" : "2022-08-02 12:04:19.7252 -0700",
  "procRole" : "Background",
  "version" : 2,
  "userID" : 503,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro18,3",
  "procStartAbsTime" : 49983165190023,
  "coalitionID" : 245015,
  "osVersion" : {
    "train" : "macOS 12.4",
    "build" : "21F79",
    "releaseType" : "User"
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  "captureTime" : "2022-08-02 15:42:40.0416 -0700",
  "incident" : "B7075888-9B1B-495F-B5A2-0EEFF2B82670",
  "bug_type" : "309",
  "pid" : 28173,
  "procExitAbsTime" : 50297570605741,
  "translated" : true,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/private\/var\/folders\/*\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "02260CFE-E748-C866-2CE9-0F87C0E56691",
  "wakeTime" : 109762,
  "sleepWakeUUID" : "DFC7A625-5573-4107-9C47-0977CF777EBB",
  "sip" : "enabled",
  "vmRegionInfo" : "0x1094c71d0 is in 0x1092c8000-0x109531000;  bytes after start: 2093520  bytes before end: 433711\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      Rosetta Generic             1092c7000-1092c8000    [    4K] rw-\/rwx SM=PRV  \n--->  mapped file                 1092c8000-109531000    [ 2468K] r-x\/rwx SM=COW  ...t_id=6b1ee1c1\n      mapped file                 109531000-10956b000    [  232K] rw-\/rwx SM=COW  ...t_id=69f380c1",
  "isCorpse" : 1,
  "exception" : {"codes":"0x000000000000000a, 0x00000001094c71d0","rawCodes":[10,4450972112],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_MEMORY_ERROR at 0x00000001094c71d0"},
  "termination" : {"flags":0,"code":10,"namespace":"SIGNAL","indicator":"Bus error: 10","byProc":"exc handler","byPid":28173},
  "ktriageinfo" : "VM - Object is not alive\n",
  "vmregioninfo" : "0x1094c71d0 is in 0x1092c8000-0x109531000;  bytes after start: 2093520  bytes before end: 433711\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      Rosetta Generic             1092c7000-1092c8000    [    4K] rw-\/rwx SM=PRV  \n--->  mapped file                 1092c8000-109531000    [ 2468K] r-x\/rwx SM=COW  ...t_id=6b1ee1c1\n      mapped file                 109531000-10956b000    [  232K] rw-\/rwx SM=COW  ...t_id=69f380c1",
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    "arch" : "x86_64",
    "base" : 140703608647680,
    "size" : 229376,
    "uuid" : "61711d11-e776-3bc3-b9a2-6f9f37cb8499",
    "path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
    "name" : "libsystem_kernel.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703608877056,
    "size" : 49152,
    "uuid" : "bc574849-1aae-31e7-b350-916dda999d97",
    "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    "name" : "libsystem_pthread.dylib"
  }
],
  "sharedCache" : {
  "base" : 140703605620736,
  "size" : 15220686848,
  "uuid" : "53b6853f-0bc3-33f5-be72-1aca3a188ff8"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=205.8M resident=0K(0%) swapped_out_or_unallocated=205.8M(100%)\nWritable regions: Total=2.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.9G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               128K        1 \nActivity Tracing                   256K        1 \nCG backing stores                 6400K        8 \nCG image                           152K       14 \nColorSync                          232K       27 \nCoreAnimation                      152K       12 \nCoreGraphics                        16K        3 \nCoreUI image data                 3960K       27 \nFoundation                          36K        2 \nKernel Alloc Once                    8K        1 \nMALLOC                             1.1G      163 \nMALLOC guard page                  192K        8 \nMALLOC_MEDIUM (reserved)         736.0M        8         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)\nMach message                        16K        4 \nOpenGL GLSL                        384K        4 \nRosetta Arena                     4096K        2 \nRosetta Generic                   1504K      373 \nRosetta IndirectBranch            2048K        1 \nRosetta JIT                      128.0M        1 \nRosetta Return Stack               640K       64 \nRosetta Thread Context             640K       64 \nSTACK GUARD                         28K        7 \nStack                            143.6M       32 \nStack Guard                       56.1M       25 \nVM_ALLOCATE                      268.3M      225 \nVM_ALLOCATE (reserved)           160.1M       15         reserved VM address space (unallocated)\n__DATA                             355K       45 \n__DATA_CONST                      3033K       40 \n__DATA_DIRTY                        79K       24 \n__LINKEDIT                       192.9M        7 \n__OBJC_RO                         82.7M        1 \n__OBJC_RW                         3200K        2 \n__TEXT                            13.0M       50 \n__UNICODE                          592K        1 \ndyld private memory               1184K        3 \nmapped file                        6.6G      948 \nshared memory                     5352K       35 \nunshared pmap                     11.8M        8 \n===========                     =======  ======= \nTOTAL                              9.9G     2257 \nTOTAL, minus reserved VM space     8.6G     2257 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "60356660bbe37970735c5624",
      "factorPackIds" : {

      },
      "deploymentId" : 240000027
    },
    {
      "rolloutId" : "5fb4245a1bbfe8005e33a1e1",
      "factorPackIds" : {

      },
      "deploymentId" : 240000015
    }
  ],
  "experiments" : [

  ]
}
}
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/rflores/Downloads/cryosparc_P117_J24_005_volume_map (2).mrc"

Opened cryosparc_P117_J24_005_volume_map (2).mrc as #1, grid size 300,300,300,
pixel 0.834, shown at level 0.208, step 2, values float32  

> volume flip #1

Opened cryosparc_P117_J24_005_volume_map (2).mrc z flip as #2, grid size
300,300,300, pixel 0.834, shown at step 1, values float32  

> volume #2 level 0.1736

> ui windowfill toggle

> open emdb:8697

Opened emdb 8697 as #3, grid size 256,256,256, pixel 1, shown at level 0.0268,
step 1, values float32  

> select add #2

2 models selected  

> ui mousemode right "translate selected models"

> show #!2 models

> select subtract #2

Nothing selected  

> select add #3

2 models selected  

> view matrix models #3,1,0,0,21.603,0,1,0,48.691,0,0,1,105.16

> view matrix models #3,1,0,0,-4.3285,0,1,0,49.812,0,0,1,113.67

> view matrix models
> #3,0.1257,0.98776,0.092389,-31.532,-0.53668,-0.010622,0.84372,138.13,0.83437,-0.15564,0.52877,88.516

> view matrix models
> #3,-0.37709,0.31653,0.87041,17.642,0.80801,-0.34691,0.47621,58.047,0.45269,0.88287,-0.12494,88.491

> view matrix models
> #3,-0.45989,0.39804,0.79377,27.594,0.76999,-0.26648,0.57975,39.272,0.44229,0.87781,-0.18393,98.048

> view matrix models
> #3,-0.45989,0.39804,0.79377,23.772,0.76999,-0.26648,0.57975,-15.957,0.44229,0.87781,-0.18393,-18.31

> view matrix models
> #3,-0.45989,0.39804,0.79377,22.477,0.76999,-0.26648,0.57975,-14.194,0.44229,0.87781,-0.18393,-20.769

> view matrix models
> #3,-0.45989,0.39804,0.79377,23.498,0.76999,-0.26648,0.57975,-20.231,0.44229,0.87781,-0.18393,-23.506

> view matrix models
> #3,-0.45989,0.39804,0.79377,22.566,0.76999,-0.26648,0.57975,-19.027,0.44229,0.87781,-0.18393,-25.861

> view matrix models
> #3,-0.45989,0.39804,0.79377,22.666,0.76999,-0.26648,0.57975,-18,0.44229,0.87781,-0.18393,-22.129

> view matrix models
> #3,-0.24606,0.48988,0.83634,-21.615,0.89397,-0.21871,0.39112,-15.517,0.37452,0.84391,-0.38412,16.549

> view matrix models
> #3,-0.25638,0.098565,0.96154,13.509,0.8776,-0.39316,0.2743,23.853,0.40508,0.91417,0.014299,-47.573

> view matrix models
> #3,-0.63331,-0.20262,0.7469,127.3,0.6836,-0.59888,0.41717,56.281,0.36278,0.77478,0.51779,-89.241

> view matrix models
> #3,-0.39672,0.48729,0.77792,5.3177,0.75594,-0.30732,0.57802,-10.788,0.52073,0.81738,-0.24644,-16.306

> fitmap #3 inMap #2

Fit map emdb 8697 in map cryosparc_P117_J24_005_volume_map (2).mrc z flip
using 167649 points  
correlation = 0.6051, correlation about mean = 0.01272, overlap = 765.3  
steps = 112, shift = 8.04, angle = 10.3 degrees  
  
Position of emdb 8697 (#3) relative to cryosparc_P117_J24_005_volume_map
(2).mrc z flip (#2) coordinates:  
Matrix rotation and translation  
-0.50973133 0.37292178 0.77530853 42.03747489  
0.69424845 -0.35395134 0.62668775 -3.64502823  
0.50812701 0.85769913 -0.07848028 -40.66860054  
Axis 0.48379686 0.55954638 0.67294016  
Axis point 35.50899958 19.26350229 0.00000000  
Rotation angle (degrees) 166.18732265  
Shift along axis -9.06949861  
  

> select subtract #3

Nothing selected  

> volume #2 level 0.344

> volume #2 level 0.2188

> ui windowfill toggle

> transparency #2.1#3.1 50

> transparency #2.1#3.1 0

> open "/Users/rflores/Downloads/cryosparc_P117_J23_004_volume_map (1).mrc"

Opened cryosparc_P117_J23_004_volume_map (1).mrc as #4, grid size 300,300,300,
pixel 0.834, shown at level 0.203, step 2, values float32  

> volume #4 level 0.1725

> volume #4 level 0.1198

> open "/Users/rflores/Downloads/cryosparc_P117_J25_004_volume_map (1).mrc"

Opened cryosparc_P117_J25_004_volume_map (1).mrc as #5, grid size 300,300,300,
pixel 0.834, shown at level 0.211, step 2, values float32  

> volume #5 level 0.1709

> volume flip #5

Opened cryosparc_P117_J25_004_volume_map (1).mrc z flip as #6, grid size
300,300,300, pixel 0.834, shown at step 1, values float32  

> volume #6 level 0.1247

> volume #2 level 0.1572

> volume #3 level 0.01093


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1 Pro
OpenGL vendor: AppleHardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,3
      Processor Name: Unknown
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache: 16 MB
      Memory: 32 GB

Software:

    System Software Overview:

      System Version: macOS 12.4 (21F79)
      Kernel Version: Darwin 21.5.0
      Time since boot: 32 days 4:04

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 14
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        LG UltraFine:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.5.30
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.0
    ParmEd: 3.2.0
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0

Change History (3)

comment:1 by pett, 3 years ago

Cc: Tom Goddard added
Component: UnassignedCore
Description: modified (diff)
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionUnknown crash after "volume level" command

comment:2 by pett, 3 years ago

Resolution: can't reproduce
Status: acceptedclosed

Was using 8.6GB at the time

comment:3 by Tom Goddard, 3 years ago

They set a threshold near 0, probably making a surface with lots of triangles. Map size was only 300 by 300 by 300.

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