![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#7363 closed defect (can't reproduce)
Crash in custom bundle initialization
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | Tom Goddard, Greg Couch | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.15.0-43-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x00007f570bcd5b80 (most recent call first):
File "/home/charles/.local/share/ChimeraX/1.4/site-packages/chimerax/Wiggle/deps/wiggle.py", line 2604 in chimera_initialise
File "/home/charles/.local/share/ChimeraX/1.4/site-packages/chimerax/Wiggle/tool.py", line 44 in __init__
File "/home/charles/.local/share/ChimeraX/1.4/site-packages/chimerax/Wiggle/__init__.py", line 30 in start_tool
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/toolshed/__init__.py", line 1325 in start_tool
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/toolshed/info.py", line 559 in start_tool
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/cmd.py", line 219 in ui_tool_show
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/commands/cli.py", line 2897 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/cmd_line/tool.py", line 319 in execute
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/cmd_line/tool.py", line 146 in keyPressEvent
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in
File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 87 in _run_code
File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> devel build /home/charles/projects/wiggle/chimera_v0.10.0/
running build
running build_py
copying src/deps/version_0.0.9.py -> build/lib/chimerax/Wiggle/deps
copying src/deps/wiggle.py -> build/lib/chimerax/Wiggle/deps
running bdist_wheel
/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning:
setup.py install is deprecated. Use build and pip and other standards-based
tools.
warnings.warn(
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/chimerax
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/version_0.0.9.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/mrc.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/wiggle.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/cryodrgn_minimal.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps/__pycache__
copying build/lib/chimerax/Wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc
-> build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps/__pycache__
copying build/lib/chimerax/Wiggle/deps/data_handler.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/ui_compiled.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/ui_compiled2.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/__init__.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle
copying build/lib/chimerax/Wiggle/wiggle.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle
copying build/lib/chimerax/Wiggle/tool.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle/cryoDRGN
copying build/lib/chimerax/Wiggle/cryoDRGN/mrc.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/cryoDRGN
copying build/lib/chimerax/Wiggle/cryoDRGN/cryodrgn_minimal.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/cryoDRGN
running install_egg_info
running egg_info
writing Wiggle.egg-info/PKG-INFO
writing dependency_links to Wiggle.egg-info/dependency_links.txt
writing requirements to Wiggle.egg-info/requires.txt
writing top-level names to Wiggle.egg-info/top_level.txt
reading manifest file 'Wiggle.egg-info/SOURCES.txt'
writing manifest file 'Wiggle.egg-info/SOURCES.txt'
Copying Wiggle.egg-info to
build/bdist.linux-x86_64/wheel/Wiggle-0.5-py3.9.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/Wiggle-0.5.dist-info/WHEEL
creating 'dist/Wiggle-0.5-py3-none-any.whl' and adding
'build/bdist.linux-x86_64/wheel' to it
adding 'chimerax/Wiggle/__init__.py'
adding 'chimerax/Wiggle/tool.py'
adding 'chimerax/Wiggle/wiggle.py'
adding 'chimerax/Wiggle/cryoDRGN/cryodrgn_minimal.py'
adding 'chimerax/Wiggle/cryoDRGN/mrc.py'
adding 'chimerax/Wiggle/deps/cryodrgn_minimal.py'
adding 'chimerax/Wiggle/deps/data_handler.py'
adding 'chimerax/Wiggle/deps/mrc.py'
adding 'chimerax/Wiggle/deps/ui_compiled.py'
adding 'chimerax/Wiggle/deps/ui_compiled2.py'
adding 'chimerax/Wiggle/deps/version_0.0.9.py'
adding 'chimerax/Wiggle/deps/wiggle.py'
adding 'chimerax/Wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc'
adding 'Wiggle-0.5.dist-info/METADATA'
adding 'Wiggle-0.5.dist-info/WHEEL'
adding 'Wiggle-0.5.dist-info/top_level.txt'
adding 'Wiggle-0.5.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Distribution is in
/home/charles/projects/wiggle/chimera_v0.10.0/dist/Wiggle-0.5-py3-none-any.whl
> devel install /home/charles/projects/wiggle/chimera_v0.10.0/
running build
running build_py
running bdist_wheel
/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning:
setup.py install is deprecated. Use build and pip and other standards-based
tools.
warnings.warn(
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/chimerax
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/version_0.0.9.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/mrc.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/wiggle.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/cryodrgn_minimal.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps/__pycache__
copying build/lib/chimerax/Wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc
-> build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps/__pycache__
copying build/lib/chimerax/Wiggle/deps/data_handler.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/ui_compiled.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/ui_compiled2.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/__init__.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle
copying build/lib/chimerax/Wiggle/wiggle.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle
copying build/lib/chimerax/Wiggle/tool.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle/cryoDRGN
copying build/lib/chimerax/Wiggle/cryoDRGN/mrc.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/cryoDRGN
copying build/lib/chimerax/Wiggle/cryoDRGN/cryodrgn_minimal.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/cryoDRGN
running install_egg_info
running egg_info
writing Wiggle.egg-info/PKG-INFO
writing dependency_links to Wiggle.egg-info/dependency_links.txt
writing requirements to Wiggle.egg-info/requires.txt
writing top-level names to Wiggle.egg-info/top_level.txt
reading manifest file 'Wiggle.egg-info/SOURCES.txt'
writing manifest file 'Wiggle.egg-info/SOURCES.txt'
Copying Wiggle.egg-info to
build/bdist.linux-x86_64/wheel/Wiggle-0.5-py3.9.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/Wiggle-0.5.dist-info/WHEEL
creating 'dist/Wiggle-0.5-py3-none-any.whl' and adding
'build/bdist.linux-x86_64/wheel' to it
adding 'chimerax/Wiggle/__init__.py'
adding 'chimerax/Wiggle/tool.py'
adding 'chimerax/Wiggle/wiggle.py'
adding 'chimerax/Wiggle/cryoDRGN/cryodrgn_minimal.py'
adding 'chimerax/Wiggle/cryoDRGN/mrc.py'
adding 'chimerax/Wiggle/deps/cryodrgn_minimal.py'
adding 'chimerax/Wiggle/deps/data_handler.py'
adding 'chimerax/Wiggle/deps/mrc.py'
adding 'chimerax/Wiggle/deps/ui_compiled.py'
adding 'chimerax/Wiggle/deps/ui_compiled2.py'
adding 'chimerax/Wiggle/deps/version_0.0.9.py'
adding 'chimerax/Wiggle/deps/wiggle.py'
adding 'chimerax/Wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc'
adding 'Wiggle-0.5.dist-info/METADATA'
adding 'Wiggle-0.5.dist-info/WHEEL'
adding 'Wiggle-0.5.dist-info/top_level.txt'
adding 'Wiggle-0.5.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Distribution is in
/home/charles/projects/wiggle/chimera_v0.10.0/dist/Wiggle-0.5-py3-none-any.whl
[toolshed install](help:user/commands/toolshed.html#install)
/home/charles/projects/wiggle/chimera_v0.10.0/dist/Wiggle-0.5-py3-none-any.whl
reinstall true
[toolshed install
/home/charles/projects/wiggle/chimera_v0.10.0/dist/Wiggle-0.5-py3-none-any.whl
reinstall true](cxcmd:toolshed install
/home/charles/projects/wiggle/chimera_v0.10.0/dist/Wiggle-0.5-py3-none-any.whl
reinstall true)
Errors may have occurred when running pip:
pip standard error:
\---
WARNING: Value for scheme.platlib does not match. Please report this to
distutils: /home/charles/.local/share/ChimeraX/1.4/site-packages
sysconfig: /home/charles/.local/lib/python3.9/site-packages
WARNING: Value for scheme.purelib does not match. Please report this to
distutils: /home/charles/.local/share/ChimeraX/1.4/site-packages
sysconfig: /home/charles/.local/lib/python3.9/site-packages
WARNING: Value for scheme.headers does not match. Please report this to
distutils: /home/charles/.local/share/ChimeraX/include/python3.9/Wiggle
sysconfig: /home/charles/.local/include/python3.9/Wiggle
WARNING: Value for scheme.scripts does not match. Please report this to
distutils: /home/charles/.local/share/ChimeraX/bin
sysconfig: /home/charles/.local/bin
WARNING: Value for scheme.data does not match. Please report this to
distutils: /home/charles/.local/share/ChimeraX
sysconfig: /home/charles/.local
WARNING: Additional context:
user = True
home = None
root = None
prefix = None
WARNING: Value for scheme.headers does not match. Please report this to
distutils: /home/charles/.local/share/ChimeraX/include/python3.9/UNKNOWN
sysconfig: /home/charles/.local/include/python3.9/UNKNOWN
WARNING: You are using pip version 21.3.1; however, version 22.2.1 is
available.
You should consider upgrading via the '/usr/bin/chimerax -m pip install
--upgrade pip' command.
\---
pip standard output:
\---
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/
Processing
/home/charles/projects/wiggle/chimera_v0.10.0/dist/Wiggle-0.5-py3-none-any.whl
Installing collected packages: Wiggle
Attempting uninstall: Wiggle
Found existing installation: Wiggle 0.5
Uninstalling Wiggle-0.5:
Successfully uninstalled Wiggle-0.5
Successfully installed Wiggle-0.5
\---
Successfully installed Wiggle-0.5
Installed Wiggle (0.5)
> ui tool show Wiggle
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> devel build /home/charles/projects/wiggle/chimera_v0.10.0/
running build
running build_py
copying src/deps/version_0.0.9.py -> build/lib/chimerax/Wiggle/deps
copying src/deps/wiggle.py -> build/lib/chimerax/Wiggle/deps
running bdist_wheel
/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning:
setup.py install is deprecated. Use build and pip and other standards-based
tools.
warnings.warn(
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/chimerax
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/version_0.0.9.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/mrc.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/wiggle.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/cryodrgn_minimal.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps/__pycache__
copying build/lib/chimerax/Wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc
-> build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps/__pycache__
copying build/lib/chimerax/Wiggle/deps/data_handler.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/ui_compiled.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/deps/ui_compiled2.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/deps
copying build/lib/chimerax/Wiggle/__init__.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle
copying build/lib/chimerax/Wiggle/wiggle.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle
copying build/lib/chimerax/Wiggle/tool.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle
creating build/bdist.linux-x86_64/wheel/chimerax/Wiggle/cryoDRGN
copying build/lib/chimerax/Wiggle/cryoDRGN/mrc.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/cryoDRGN
copying build/lib/chimerax/Wiggle/cryoDRGN/cryodrgn_minimal.py ->
build/bdist.linux-x86_64/wheel/chimerax/Wiggle/cryoDRGN
running install_egg_info
running egg_info
writing Wiggle.egg-info/PKG-INFO
writing dependency_links to Wiggle.egg-info/dependency_links.txt
writing requirements to Wiggle.egg-info/requires.txt
writing top-level names to Wiggle.egg-info/top_level.txt
reading manifest file 'Wiggle.egg-info/SOURCES.txt'
writing manifest file 'Wiggle.egg-info/SOURCES.txt'
Copying Wiggle.egg-info to
build/bdist.linux-x86_64/wheel/Wiggle-0.5-py3.9.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/Wiggle-0.5.dist-info/WHEEL
creating 'dist/Wiggle-0.5-py3-none-any.whl' and adding
'build/bdist.linux-x86_64/wheel' to it
adding 'chimerax/Wiggle/__init__.py'
adding 'chimerax/Wiggle/tool.py'
adding 'chimerax/Wiggle/wiggle.py'
adding 'chimerax/Wiggle/cryoDRGN/cryodrgn_minimal.py'
adding 'chimerax/Wiggle/cryoDRGN/mrc.py'
adding 'chimerax/Wiggle/deps/cryodrgn_minimal.py'
adding 'chimerax/Wiggle/deps/data_handler.py'
adding 'chimerax/Wiggle/deps/mrc.py'
adding 'chimerax/Wiggle/deps/ui_compiled.py'
adding 'chimerax/Wiggle/deps/ui_compiled2.py'
adding 'chimerax/Wiggle/deps/version_0.0.9.py'
adding 'chimerax/Wiggle/deps/wiggle.py'
adding 'chimerax/Wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc'
adding 'Wiggle-0.5.dist-info/METADATA'
adding 'Wiggle-0.5.dist-info/WHEEL'
adding 'Wiggle-0.5.dist-info/top_level.txt'
adding 'Wiggle-0.5.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Distribution is in
/home/charles/projects/wiggle/chimera_v0.10.0/dist/Wiggle-0.5-py3-none-any.whl
OpenGL version: 3.3.0 NVIDIA 515.48.07
OpenGL renderer: NVIDIA GeForce RTX 3080 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: en_AU.UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: xcb
XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: Micro-Star International Co., Ltd.
Model: MS-7B94
OS: Ubuntu 22.04 jammy
Architecture: 64bit ELF
Virtual Machine: none
CPU: 36 Intel(R) Core(TM) i9-10980XE CPU @ 3.00GHz
Cache Size: 25344 KB
Memory:
total used free shared buff/cache available
Mem: 31Gi 4.3Gi 2.8Gi 130Mi 23Gi 25Gi
Swap: 2.0Gi 31Mi 2.0Gi
Graphics:
17:00.0 VGA compatible controller [0300]: NVIDIA Corporation GA102GL [RTX A6000] [10de:2230] (rev a1)
Subsystem: NVIDIA Corporation GA102GL [RTX A6000] [10de:1459]
Kernel driver in use: nvidia
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2022.5.18.1
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-LinuxSupport: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
distro: 1.6.0
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
joblib: 1.1.0
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt5: 5.15.7
PyQt5-Qt5: 5.15.2
PyQt5-sip: 12.11.0
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
pyqtgraph: 0.11.1
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scikit-learn: 0.24.2
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
threadpoolctl: 3.1.0
tifffile: 2021.11.2
tinyarray: 1.2.4
torch: 1.7.1
tornado: 6.1
traitlets: 5.1.1
typing-extensions: 4.3.0
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Wiggle: 0.5
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Third Party |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in custom bundle initialization |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
Without access to this "Wiggle" bundle source, I don't know that there's much we can do.