![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#7323 closed defect (nonchimerax)
Graphics crash, macOS 11.6.7, Intel Iris Plus Graphics 650
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x0000000107ca9e00 (most recent call first):
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 2720 in draw_elements
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1723 in draw
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 824 in _draw_geometry
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 759 in draw_self
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 752 in draw
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1539 in _draw_multiple
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1526 in draw_opaque
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 235 in _draw_scene
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 165 in draw
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 276 in render
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 112 in _redraw
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 134 in invoke
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 217 in _activate
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 186 in activate
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 354 in activate_trigger
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 89 in draw_new_frame
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [68481]
Path: /Applications/ChimeraX-1.4.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.4.0 (1.4.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [68481]
User ID: 501
Date/Time: 2022-07-22 15:54:57.721 +0200
OS Version: macOS 11.6.7 (20G630)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: EF7E5736-BD73-EC8B-9E14-B6797D473A00
Sleep/Wake UUID: D151A38A-F2B5-4B3F-8D09-6BA85D46FAF6
Time Awake Since Boot: 280000 seconds
Time Since Wake: 7000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2039d91e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff203cc5bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff202b0bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20411d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff20321406 abort + 125
6 libGPUSupportMercury.dylib 0x00007fff46318096 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff4630f21c gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5fa51d09 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff4631072d gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ece2dba IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ece2bce intelSubmitCommands + 171
12 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ecd63de updateDispatch + 6167
13 GLEngine 0x00007fff6bbcc2e6 gleDoDrawDispatchCoreGL3 + 674
14 GLEngine 0x00007fff6bb9f318 glDrawElementsInstanced_ACC_GL3Exec + 290
15 libffi.dylib 0x00007fff2d9af8f5 ffi_call_unix64 + 85
16 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
17 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
18 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
19 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
20 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
21 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
22 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
23 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
24 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
25 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
26 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
27 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
28 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
29 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
30 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
31 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
32 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
33 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
34 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
35 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
36 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
37 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
38 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
39 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
40 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
41 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
42 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
43 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
44 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
45 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
46 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
47 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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51 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
52 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
53 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
54 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
55 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
56 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
57 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
58 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
59 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
60 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
61 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
62 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
63 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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98 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
99 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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101 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
102 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
103 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
104 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
105 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
106 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
107 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
108 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
109 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
110 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
111 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
112 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
113 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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117 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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134 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
135 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
136 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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148 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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152 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
153 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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157 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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160 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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170 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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172 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
173 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
174 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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176 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
177 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
178 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
179 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
180 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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183 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
184 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
185 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
186 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
187 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
188 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
189 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
190 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
191 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
192 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
193 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
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475 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
476 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
477 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
478 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
479 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
480 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
481 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
482 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
483 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
484 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
485 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
486 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
487 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
488 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
489 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
490 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
491 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
492 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
493 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
494 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
495 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
496 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
497 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
498 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
499 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
500 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
501 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
502 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
503 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
504 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
505 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
506 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
507 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
508 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
509 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
510 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
511 libffi.dylib 0x00007fff2d9af22d ffi_call_int + 699
Thread 1:
0 libsystem_kernel.dylib 0x00007fff20399cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203cce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010801b49f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 2:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff203a01c2 kevent64 + 10
1 QtWebEngineCore 0x00000001172415ca 0x1132df000 + 66463178
2 QtWebEngineCore 0x00000001172414c7 0x1132df000 + 66462919
3 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
4 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
5 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
6 QtWebEngineCore 0x00000001171c784d 0x1132df000 + 65964109
7 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
8 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
9 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 3:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x00000001171d3d5f 0x1132df000 + 66014559
4 QtWebEngineCore 0x00000001171d480c 0x1132df000 + 66017292
5 QtWebEngineCore 0x00000001171d437d 0x1132df000 + 66016125
6 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
7 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 4:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff203a01c2 kevent64 + 10
1 QtWebEngineCore 0x00000001172415ca 0x1132df000 + 66463178
2 QtWebEngineCore 0x00000001172414c7 0x1132df000 + 66462919
3 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
4 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
5 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
6 QtWebEngineCore 0x0000000116106e32 0x1132df000 + 48397874
7 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
8 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
9 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x000000011720f78f 0x1132df000 + 66258831
4 QtWebEngineCore 0x0000000117145089 0x1132df000 + 65429641
5 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
6 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
7 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
8 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
9 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
10 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff20399cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203cce49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x00000001172078bb 0x1132df000 + 66226363
3 QtWebEngineCore 0x00000001192d855d 0x1132df000 + 100635997
4 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
5 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x000000011720f78f 0x1132df000 + 66258831
4 QtWebEngineCore 0x0000000117145089 0x1132df000 + 65429641
5 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
6 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
7 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
8 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
9 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
10 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff203a01c2 kevent64 + 10
1 QtWebEngineCore 0x00000001172415ca 0x1132df000 + 66463178
2 QtWebEngineCore 0x00000001172414c7 0x1132df000 + 66462919
3 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
4 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
5 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
6 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
7 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
8 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x000000011720f78f 0x1132df000 + 66258831
4 QtWebEngineCore 0x0000000117145089 0x1132df000 + 65429641
5 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
6 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
7 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
8 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
9 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
10 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x000000011720f78f 0x1132df000 + 66258831
4 QtWebEngineCore 0x0000000117145089 0x1132df000 + 65429641
5 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
6 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
7 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
8 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
9 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
10 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 11:: NetworkService
0 libsystem_kernel.dylib 0x00007fff203a01c2 kevent64 + 10
1 QtWebEngineCore 0x00000001172415ca 0x1132df000 + 66463178
2 QtWebEngineCore 0x00000001172414c7 0x1132df000 + 66462919
3 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
4 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
5 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
6 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
7 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
8 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x000000011720f78f 0x1132df000 + 66258831
4 QtWebEngineCore 0x0000000117145089 0x1132df000 + 65429641
5 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
6 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
7 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
8 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
9 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
10 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x00000001171d3d5f 0x1132df000 + 66014559
4 QtWebEngineCore 0x00000001171d480c 0x1132df000 + 66017292
5 QtWebEngineCore 0x00000001171d446d 0x1132df000 + 66016365
6 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
7 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x000000011720f78f 0x1132df000 + 66258831
4 QtWebEngineCore 0x0000000117145089 0x1132df000 + 65429641
5 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
6 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
7 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
8 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
9 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
10 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff204c4ecf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff204c35af __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff204c29bc CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22e51bba _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 16:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x000000011720f78f 0x1132df000 + 66258831
4 QtWebEngineCore 0x0000000117145089 0x1132df000 + 65429641
5 QtWebEngineCore 0x00000001171be19c 0x1132df000 + 65925532
6 QtWebEngineCore 0x0000000117175ff8 0x1132df000 + 65630200
7 QtWebEngineCore 0x00000001171e0458 0x1132df000 + 66065496
8 QtWebEngineCore 0x00000001171e05ea 0x1132df000 + 66065898
9 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
10 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x00000001171d3d5f 0x1132df000 + 66014559
4 QtWebEngineCore 0x00000001171d453a 0x1132df000 + 66016570
5 QtWebEngineCore 0x00000001171d43ad 0x1132df000 + 66016173
6 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
7 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 18:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff20399cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203cce49 _pthread_cond_wait + 1298
2 QtCore 0x00000001074b71ab 0x1072b4000 + 2109867
3 QtCore 0x00000001074b711e QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x0000000112c4dd7d QFileInfoGatherer::run() + 125
5 QtCore 0x00000001074acb43 0x1072b4000 + 2067267
6 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 19:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x00000001171d3d5f 0x1132df000 + 66014559
4 QtWebEngineCore 0x00000001171d480c 0x1132df000 + 66017292
5 QtWebEngineCore 0x00000001171d440d 0x1132df000 + 66016269
6 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
7 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 20:
0 libsystem_pthread.dylib 0x00007fff203c8420 start_wqthread + 0
Thread 21:
0 libsystem_pthread.dylib 0x00007fff203c8420 start_wqthread + 0
Thread 22:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x00000001171d3d5f 0x1132df000 + 66014559
4 QtWebEngineCore 0x00000001171d480c 0x1132df000 + 66017292
5 QtWebEngineCore 0x00000001171d440d 0x1132df000 + 66016269
6 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
7 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 23:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x00000001171d3d5f 0x1132df000 + 66014559
4 QtWebEngineCore 0x00000001171d453a 0x1132df000 + 66016570
5 QtWebEngineCore 0x00000001171d440d 0x1132df000 + 66016269
6 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
7 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 24:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff203972aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039761c mach_msg + 60
2 QtWebEngineCore 0x000000011720f9c6 0x1132df000 + 66259398
3 QtWebEngineCore 0x00000001171d3d5f 0x1132df000 + 66014559
4 QtWebEngineCore 0x00000001171d453a 0x1132df000 + 66016570
5 QtWebEngineCore 0x00000001171d437d 0x1132df000 + 66016125
6 QtWebEngineCore 0x00000001172084a8 0x1132df000 + 66229416
7 libsystem_pthread.dylib 0x00007fff203cc8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c8443 thread_start + 15
Thread 25:
0 libsystem_pthread.dylib 0x00007fff203c8420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000107ca9e00 rcx: 0x00007feae8955a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007feae8955a80 rsp: 0x00007feae8955a58
r8: 0x00007feae8955f48 r9: 0xad125f1ec49419dd r10: 0x0000000107ca9e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007feaecb0b518 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff2039d91e rfl: 0x0000000000000246 cr2: 0x0000000105cff7b8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
0x105a8b000 - 0x105a8bfff +edu.ucsf.cgl.ChimeraX (1.4.0 - 1.4.0.0) /Applications/ChimeraX-1.4.app/Contents/MacOS/ChimeraX
0x105a96000 - 0x105cfefff +org.python.python (3.9.11, [c] 2001-2021 Python Software Foundation. - 3.9.11) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
0x105e65000 - 0x105e67fff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x105e71000 - 0x105e75fff +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x105e7f000 - 0x105e84fff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
0x105e8e000 - 0x105e90fff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x105e9a000 - 0x105ecbfff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
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0x7fff332de000 - 0x7fff3331dfff com.apple.AppleIDSSOAuthentication (1.0 - 1) /System/Library/PrivateFrameworks/AppleIDSSOAuthentication.framework/Versions/A/AppleIDSSOAuthentication
0x7fff33431000 - 0x7fff33431fff libHeimdalProxy.dylib (79) /System/Library/Frameworks/Kerberos.framework/Versions/A/Libraries/libHeimdalProxy.dylib
0x7fff334e4000 - 0x7fff334e4fff com.apple.audio.units.AudioUnit (1.14 - 1.14) /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x7fff33508000 - 0x7fff3354bfff com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip
0x7fff3354c000 - 0x7fff3356afff com.apple.DuetActivityScheduler (1.0 - 1) /System/Library/PrivateFrameworks/DuetActivityScheduler.framework/Versions/A/DuetActivityScheduler
0x7fff3357f000 - 0x7fff3358bfff com.apple.IntentsFoundation (1.0 - 1) /System/Library/PrivateFrameworks/IntentsFoundation.framework/Versions/A/IntentsFoundation
0x7fff3358c000 - 0x7fff33591fff com.apple.PushKit (1.0 - 1) /System/Library/Frameworks/PushKit.framework/Versions/A/PushKit
0x7fff33592000 - 0x7fff335c5fff com.apple.C2 (1.3 - 573) /System/Library/PrivateFrameworks/C2.framework/Versions/A/C2
0x7fff335c6000 - 0x7fff335f6fff com.apple.QuickLookThumbnailing (1.0 - 135.5) /System/Library/Frameworks/QuickLookThumbnailing.framework/Versions/A/QuickLookThumbnailing
0x7fff335f7000 - 0x7fff33df8fff com.apple.vision.EspressoFramework (1.0 - 256.4.4) /System/Library/PrivateFrameworks/Espresso.framework/Versions/A/Espresso
0x7fff33df9000 - 0x7fff33e10fff com.apple.ANEServices (4.76 - 4.76) /System/Library/PrivateFrameworks/ANEServices.framework/Versions/A/ANEServices
0x7fff33e11000 - 0x7fff33e76fff com.apple.proactive.support.ProactiveSupport (1.0 - 294.7) /System/Library/PrivateFrameworks/ProactiveSupport.framework/Versions/A/ProactiveSupport
0x7fff33e77000 - 0x7fff33e81fff com.apple.corerecents (1.0 - 1) /System/Library/PrivateFrameworks/CoreRecents.framework/Versions/A/CoreRecents
0x7fff33e82000 - 0x7fff33eb3fff com.apple.iCalendar (7.0 - 833) /System/Library/PrivateFrameworks/iCalendar.framework/Versions/A/iCalendar
0x7fff33eb4000 - 0x7fff33f24fff com.apple.CalendarFoundation (8.0 - 1178.5.2) /System/Library/PrivateFrameworks/CalendarFoundation.framework/Versions/A/CalendarFoundation
0x7fff33f25000 - 0x7fff33f27fff com.apple.CoreDuetDebugLogging (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDebugLogging.framework/Versions/A/CoreDuetDebugLogging
0x7fff33f28000 - 0x7fff33f34fff com.apple.CoreDuetDaemonProtocol (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDaemonProtocol.framework/Versions/A/CoreDuetDaemonProtocol
0x7fff341c8000 - 0x7fff3449bfff com.apple.spotlight.index (10.7.0 - 2150.26) /System/Library/PrivateFrameworks/SpotlightIndex.framework/Versions/A/SpotlightIndex
0x7fff344b4000 - 0x7fff34504fff com.apple.ChunkingLibrary (334.1 - 334.1) /System/Library/PrivateFrameworks/ChunkingLibrary.framework/Versions/A/ChunkingLibrary
0x7fff3463b000 - 0x7fff3468afff com.apple.CalDAV (8.0 - 795) /System/Library/PrivateFrameworks/CalDAV.framework/Versions/A/CalDAV
0x7fff3468b000 - 0x7fff34728fff com.apple.CoreSuggestions (1.0 - 1115.519) /System/Library/PrivateFrameworks/CoreSuggestions.framework/Versions/A/CoreSuggestions
0x7fff34729000 - 0x7fff348b3fff com.apple.ical.EventKit (3.0 - 1414.5.1) /System/Library/Frameworks/EventKit.framework/Versions/A/EventKit
0x7fff348b4000 - 0x7fff34b85fff com.apple.CalendarPersistence (8.0 - 1071.4.4) /System/Library/PrivateFrameworks/CalendarPersistence.framework/Versions/A/CalendarPersistence
0x7fff34b86000 - 0x7fff34babfff com.apple.CalendarAgentLink (8.0 - 250) /System/Library/PrivateFrameworks/CalendarAgentLink.framework/Versions/A/CalendarAgentLink
0x7fff34bac000 - 0x7fff34bb6fff com.apple.RTCReporting (11.85.2 - 11.85.2) /System/Library/PrivateFrameworks/RTCReporting.framework/Versions/A/RTCReporting
0x7fff34d5e000 - 0x7fff34d60fff com.apple.ConstantClasses (1.0 - 1) /System/Library/PrivateFrameworks/ConstantClasses.framework/Versions/A/ConstantClasses
0x7fff34d78000 - 0x7fff34d8dfff com.apple.CoreML.AppleNeuralEngine (1.0 - 1) /System/Library/PrivateFrameworks/AppleNeuralEngine.framework/Versions/A/AppleNeuralEngine
0x7fff34de3000 - 0x7fff34e4efff com.apple.audio.midi.CoreMIDI (2.0 - 88) /System/Library/Frameworks/CoreMIDI.framework/Versions/A/CoreMIDI
0x7fff34f14000 - 0x7fff34f17fff com.apple.Cocoa (6.11 - 23) /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff34f61000 - 0x7fff35355fff com.apple.AppleMediaServices (1.0 - 1) /System/Library/PrivateFrameworks/AppleMediaServices.framework/Versions/A/AppleMediaServices
0x7fff3538d000 - 0x7fff35805fff com.apple.MediaRemote (1.0 - 1) /System/Library/PrivateFrameworks/MediaRemote.framework/Versions/A/MediaRemote
0x7fff35b01000 - 0x7fff35b08fff com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff3634a000 - 0x7fff3637afff libtidy.A.dylib (18.2) /usr/lib/libtidy.A.dylib
0x7fff3637b000 - 0x7fff3639bfff com.apple.MarkupUI (1.0 - 383.6) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff3639c000 - 0x7fff363affff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff363b0000 - 0x7fff363d3fff com.apple.openscripting (1.7 - 190.1) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff363d4000 - 0x7fff363d7fff com.apple.securityhi (9.0 - 55008) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff363d8000 - 0x7fff363dbfff com.apple.ink.framework (10.15 - 227) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff363dc000 - 0x7fff363dffff com.apple.CommonPanels (1.2.6 - 101) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff363e0000 - 0x7fff363e7fff com.apple.ImageCapture (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff363e8000 - 0x7fff375d8fff com.apple.JavaScriptCore (16611 - 16611.3.10.1.16) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff37644000 - 0x7fff37756fff com.apple.AVFCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/AVFCapture.framework/Versions/A/AVFCapture
0x7fff37757000 - 0x7fff377eafff com.apple.Quagga (47 - 47) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff377eb000 - 0x7fff37a35fff com.apple.CMCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff37dd1000 - 0x7fff37e7efff com.apple.accounts.AccountsDaemon (113 - 113) /System/Library/PrivateFrameworks/AccountsDaemon.framework/Versions/A/AccountsDaemon
0x7fff37e7f000 - 0x7fff37e81fff com.apple.OAuth (25 - 25) /System/Library/PrivateFrameworks/OAuth.framework/Versions/A/OAuth
0x7fff38431000 - 0x7fff38440fff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff38441000 - 0x7fff38568fff com.apple.QuickLookUIFramework (5.0 - 928.5) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff3893b000 - 0x7fff389c1fff com.apple.coredav (1.0.1 - 889.0.0.2) /System/Library/PrivateFrameworks/CoreDAV.framework/Versions/A/CoreDAV
0x7fff389c2000 - 0x7fff38a17fff com.apple.ExchangeWebServices (8.0 - 814.110.1) /System/Library/PrivateFrameworks/ExchangeWebServices.framework/Versions/A/ExchangeWebServices
0x7fff38a18000 - 0x7fff38a58fff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff38b54000 - 0x7fff38b54fff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff38d3a000 - 0x7fff38d72fff com.apple.contacts.ContactsAutocomplete (1.0 - 1152.4) /System/Library/PrivateFrameworks/ContactsAutocomplete.framework/Versions/A/ContactsAutocomplete
0x7fff38d73000 - 0x7fff38d7ffff com.apple.KerberosHelper (4.0 - 1.0) /System/Library/PrivateFrameworks/KerberosHelper.framework/Versions/A/KerberosHelper
0x7fff38d80000 - 0x7fff38dc3fff com.apple.ResponseKit (1.0 - 165.2) /System/Library/PrivateFrameworks/ResponseKit.framework/Versions/A/ResponseKit
0x7fff38dc4000 - 0x7fff38de3fff com.apple.proactive.support.ProactiveEventTracker (1.0 - 294.7) /System/Library/PrivateFrameworks/ProactiveEventTracker.framework/Versions/A/ProactiveEventTracker
0x7fff39207000 - 0x7fff39207fff com.apple.PhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/PhoneNumbers.framework/Versions/A/PhoneNumbers
0x7fff39208000 - 0x7fff3920ffff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff39210000 - 0x7fff3921efff com.apple.accessibility.AXCoreUtilities (1.0 - 1) /System/Library/PrivateFrameworks/AXCoreUtilities.framework/Versions/A/AXCoreUtilities
0x7fff3921f000 - 0x7fff39236fff libAccessibility.dylib (2885.49.1) /usr/lib/libAccessibility.dylib
0x7fff3bc6d000 - 0x7fff3bc8ffff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3bc90000 - 0x7fff3bd27fff com.apple.AirPlaySync (1.0 - 2780.10.4.1) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3c8b8000 - 0x7fff3c93bfff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3c93c000 - 0x7fff3c93ffff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3c940000 - 0x7fff3c943fff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3ca3c000 - 0x7fff3ca3cfff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cbf6000 - 0x7fff3cc15fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3cd62000 - 0x7fff3cdb8fff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x7fff3cdb9000 - 0x7fff3cdd6fff com.apple.sidecar-core (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3cdd7000 - 0x7fff3cddafff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d1f2000 - 0x7fff3d1f8fff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d369000 - 0x7fff3d380fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.16) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d533000 - 0x7fff3d53efff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d553000 - 0x7fff3d565fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d566000 - 0x7fff3d569fff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d582000 - 0x7fff3d6f1fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d6f2000 - 0x7fff3d94dfff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3d94e000 - 0x7fff3da64fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3da65000 - 0x7fff3da76fff com.apple.sidecar-ui (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e099000 - 0x7fff3e0fbfff com.apple.ImageCaptureCore (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e0fc000 - 0x7fff3e121fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e36d000 - 0x7fff3e4cffff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e4d0000 - 0x7fff3e7b1fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3e7dd000 - 0x7fff3e909fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3e90a000 - 0x7fff3edaafff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3edab000 - 0x7fff3ee93fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fbda000 - 0x7fff3fc57fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff40df2000 - 0x7fff40df5fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff4121a000 - 0x7fff41238fff libCGInterfaces.dylib (544.5) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff428b8000 - 0x7fff43618fff libfaceCore.dylib (4.3.1) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x7fff43619000 - 0x7fff4372cfff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x7fff4372d000 - 0x7fff43745fff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff437c7000 - 0x7fff43a3afff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff442a3000 - 0x7fff442a7fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45c1e000 - 0x7fff45c21fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff4630d000 - 0x7fff46318fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47943000 - 0x7fff47984fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff481d2000 - 0x7fff481edfff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff513cb000 - 0x7fff513f8fff com.apple.HelpData (2.3 - 201.1) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff513f9000 - 0x7fff51413fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff51414000 - 0x7fff514b3fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff516a3000 - 0x7fff516a6fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff53d3c000 - 0x7fff53d72fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55369000 - 0x7fff5536cfff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5daa4000 - 0x7fff5df2ffff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.5.11 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver
0x7fff5ecc8000 - 0x7fff5fcaffff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.5.11 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver
0x7fff69461000 - 0x7fff69465fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6b8ac000 - 0x7fff6b8b2fff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6b8b3000 - 0x7fff6b8b7fff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6b8b8000 - 0x7fff6b8c7fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6b8c8000 - 0x7fff6b8cafff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6b8cb000 - 0x7fff6b8d3fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6b8d4000 - 0x7fff6b907fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6b908000 - 0x7fff6b944fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6b945000 - 0x7fff6bad8fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bad9000 - 0x7fff6bae3fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bae4000 - 0x7fff6bc61fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bc62000 - 0x7fff6bc8afff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6cf23000 - 0x7fff6cf7bfff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e025000 - 0x7fff6e02cfff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e02d000 - 0x7fff6e114fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f2a8000 - 0x7fff6f2b2fff com.apple.AccessibilityBundles (1.0 - 174) /System/Library/PrivateFrameworks/AccessibilityBundles.framework/Versions/A/AccessibilityBundles
0x7fff6f696000 - 0x7fff6f6a8fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff739c6000 - 0x7fff739d1fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73be7000 - 0x7fff73bfffff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff7750f000 - 0x7fff77516fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=11.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=11.8G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 768K 6
Activity Tracing 256K 1
CG backing stores 4320K 12
CG image 596K 54
CoreAnimation 628K 79
CoreGraphics 16K 3
CoreServices 624K 2
CoreUI image data 5424K 59
Foundation 40K 2
Kernel Alloc Once 8K 1
MALLOC 11.2G 1568
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 100K 25
Stack 163.2M 26
Stack Guard 56.0M 1
VM_ALLOCATE 174.6M 222
__DATA 36.1M 639
__DATA_CONST 27.7M 314
__DATA_DIRTY 1708K 213
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 530.6M 183
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 659.4M 621
__UNICODE 588K 1
mapped file 265.4M 52
shared memory 2972K 27
=========== ======= =======
TOTAL 13.4G 4132
TOTAL, minus reserved VM space 13.1G 4132
===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/tina/PG/projects/minicell-structure/fitting/mot3-session.cxs
Opened scaffold_rigid_new.mrc as #8, grid size 800,800,800, pixel 2.2, shown
at level 0.0106, step 1, values float32
> surface cap false
opened ChimeraX session
Drag select of 1240 residues
Populating font family aliases took 769 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.
> save /Users/tina/Desktop/pfla-temp.pdb selectedOnly true relModel #8
> open /Users/tina/Desktop/pfla-temp.pdb
Summary of feedback from opening /Users/tina/Desktop/pfla-temp.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 THR C 85
TYR C 109 1 25
Start residue of secondary structure not found: HELIX 2 2 ALA C 162 PHE C 169
1 8
Start residue of secondary structure not found: HELIX 3 3 THR D 85 TYR D 109 1
25
Start residue of secondary structure not found: HELIX 4 4 ALA D 162 PHE D 169
1 8
Start residue of secondary structure not found: HELIX 5 5 THR E 85 TYR E 109 1
25
45 messages similar to the above omitted
Chain information for pfla-temp.pdb #4
---
Chain | Description
J K | No description available
> hide #7 models
> close #7
> select add #2
214708 atoms, 215930 bonds, 51 pseudobonds, 14274 residues, 2 models selected
> show #!2 models
> close #2
> save /Users/tina/PG/projects/minicell-structure/fitting/mot3-session.cxs
> includeMaps true
> show #!1 models
> rainbow #4
> rainbow #4 chains
> show #!8 models
> volume #8 level 0.008986
> hide #!8 models
> show #!8 models
> volume #8 level 0.0102
Drag select of 10 residues, 8 scaffold_rigid_new.mrc
> volume #8 level 0.01147
> select clear
> show #3 models
> hide #3 models
> show #3 models
> ui tool show "Side View"
Drag select of 13 residues, 8 scaffold_rigid_new.mrc
> select clear
> select add #1.4/H:316
22 atoms, 21 bonds, 1 residue, 1 model selected
> select add #1.4/H:342
39 atoms, 37 bonds, 2 residues, 2 models selected
> select up
336 atoms, 338 bonds, 18 residues, 2 models selected
> select up
1363 atoms, 1369 bonds, 86 residues, 2 models selected
> mmaker #3 to sel
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker flgP3mot3-C17-isolde.pdb, chain H (#1.4) with 1be9-PDZ-canonical,
chain A (#3), sequence alignment score = 58.7
RMSD between 33 pruned atom pairs is 1.085 angstroms; (across all 75 pairs:
11.126)
> show #5 models
> hide #5 models
> show #5 models
> mmaker #5 to sel
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker flgP3mot3-C17-isolde.pdb, chain H (#1.4) with 1fc9-PDZ-like, chain
A (#5), sequence alignment score = 74.8
RMSD between 48 pruned atom pairs is 1.262 angstroms; (across all 80 pairs:
6.910)
> hide #4 models
> show #4 models
> hide #3 models
> show #!6 models
> mmaker #6 to sel
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker flgP3mot3-C17-isolde.pdb, chain H (#1.4) with 1lcy-PDZ-like-htr2,
chain A (#6), sequence alignment score = 70.3
RMSD between 49 pruned atom pairs is 1.024 angstroms; (across all 72 pairs:
8.756)
> select #1.4/C:84
11 atoms, 10 bonds, 1 residue, 1 model selected
> select add #1.4/C:83
27 atoms, 25 bonds, 2 residues, 1 model selected
> select add #1.4/C:82
41 atoms, 38 bonds, 3 residues, 1 model selected
> select add #1.4/C:81
55 atoms, 51 bonds, 4 residues, 1 model selected
> select subtract #1.4/C:84
44 atoms, 41 bonds, 3 residues, 1 model selected
> select add #1.4/C:80
61 atoms, 57 bonds, 4 residues, 1 model selected
> hide #4 models
> show #4 models
> hide #4 models
> hide #5 models
> hide #!6 models
> select add #1.4/H:252
75 atoms, 70 bonds, 5 residues, 1 model selected
> select add #1.4/H:251
95 atoms, 90 bonds, 6 residues, 2 models selected
> select #1.4/H:253
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1.4/H:250-253
59 atoms, 59 bonds, 4 residues, 1 model selected
> select #1.4/H:254
14 atoms, 13 bonds, 1 residue, 1 model selected
> select #1.4/H:251-254
59 atoms, 59 bonds, 4 residues, 1 model selected
> select #1.4/H:249
16 atoms, 15 bonds, 1 residue, 1 model selected
> select #1.4/H:249-253
75 atoms, 75 bonds, 5 residues, 1 model selected
> save /Users/tina/PG/projects/minicell-structure/fitting/mot3-session.cxs
> includeMaps true
> view
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.5.11
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 650
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 3.1 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 451.120.7.0.0
SMC Version (system): 2.44f6
Software:
System Software Overview:
System Version: macOS 11.6.7 (20G630)
Kernel Version: Darwin 20.6.0
Time since boot: 10 days 5 minutes
Graphics/Displays:
Intel Iris Plus Graphics 650:
Chipset Model: Intel Iris Plus Graphics 650
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5927
Revision ID: 0x0006
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 11.6.7, Intel Iris Plus Graphics 650 |
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Apple graphics driver crash.