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Opened 3 years ago
Closed 3 years ago
#7293 closed defect (nonchimerax)
Graphics crash, macOS 12.3.1, Intel Iris Plus Graphics
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Thread 0x0000700024f3d000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700023f3a000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700022f37000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700021f34000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700020f31000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001ff2e000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001ef2b000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001df28000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001cf25000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001bf22000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001af1f000 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x0000000108032600 (most recent call first):
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 235 in swap_buffers
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 496 in swap_buffers
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 179 in draw
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/h0/lj8pv4t17ylcs6tvvf43fvk80000gn/T/AppTranslocation/0723B633-F18B-465E-A14C-7021C53F58EE/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2022-07-17 15:52:45.00 -0400","app_version":"1.4.0","slice_uuid":"9596eff5-d2be-396c-9c4e-6177235c3dae","build_version":"1.4.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.3.1 (21E258)","incident_id":"C7D92BD3-04F8-48D4-AF50-98A5DD9290F5","name":"ChimeraX"}
{
"uptime" : 86000,
"procLaunch" : "2022-07-17 14:28:56.9361 -0400",
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,2",
"procStartAbsTime" : 81943216568411,
"coalitionID" : 7724,
"osVersion" : {
"train" : "macOS 12.3.1",
"build" : "21E258",
"releaseType" : "User"
},
"captureTime" : "2022-07-17 15:52:33.8787 -0400",
"incident" : "C7D92BD3-04F8-48D4-AF50-98A5DD9290F5",
"bug_type" : "309",
"pid" : 47373,
"procExitAbsTime" : 86960088503408,
"cpuType" : "X86-64",
"procName" : "ChimeraX",
"procPath" : "\/Volumes\/VOLUME\/*\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.4.0","CFBundleVersion":"1.4.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"B3AD72E7-0B89-5152-82C8-175144175A10","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "4793223E-0609-F32A-3AD5-F95CFEFDA3CC",
"wakeTime" : 5630,
"bridgeVersion" : {"build":"19P4243","train":"6.4"},
"sleepWakeUUID" : "DFEF722D-22F7-4452-B5AC-BD7B7C1B93E8",
"sip" : "enabled",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
"asi" : {"libsystem_c.dylib":["abort() called"]},
"asiSignatures" : ["Graphics hardware encountered an error and was reset: 0x00000002\n"],
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> help help:quickstart
> open
> /Users/alexiavo/Downloads/DOZIPfIF4E_AF2_tempmode_none_eb419_relaxed_rank_1_model_1.pdb
Chain information for
DOZIPfIF4E_AF2_tempmode_none_eb419_relaxed_rank_1_model_1.pdb #1
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/alexiavo/Downloads/DOZIPfIF4E_AF2_tempmode_none_eb419_relaxed_rank_5_model_5.pdb
Chain information for
DOZIPfIF4E_AF2_tempmode_none_eb419_relaxed_rank_5_model_5.pdb #2
---
Chain | Description
A | No description available
B | No description available
> hide #2 models
> open
> /Users/alexiavo/Downloads/DOZIPfIF4E_AF2_tempmode_none_eb419_unrelaxed_rank_3_model_2.pdb
Chain information for
DOZIPfIF4E_AF2_tempmode_none_eb419_unrelaxed_rank_3_model_2.pdb #3
---
Chain | Description
B | No description available
C | No description available
> hide #3 models
> hide #1 models
> open
> /Users/alexiavo/Downloads/DOZIPfIF4E_AF2_tempmode_none_eb419_unrelaxed_rank_1_model_1.pdb
Chain information for
DOZIPfIF4E_AF2_tempmode_none_eb419_unrelaxed_rank_1_model_1.pdb #4
---
Chain | Description
B | No description available
C | No description available
> hide #4 models
> show #1 models
> sequence chain #4/B
Alignment identifier is 4/B
> select #4/B:1-433
3469 atoms, 3532 bonds, 433 residues, 1 model selected
> select #4/B:1-433
3469 atoms, 3532 bonds, 433 residues, 1 model selected
> select add #4
5372 atoms, 5484 bonds, 660 residues, 1 model selected
> select subtract #4
Nothing selected
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
Alignment identifier is 1
Alignment identifier is 2
> select /A:1-433
14002 atoms, 14128 bonds, 866 residues, 2 models selected
> select /B:1-227
11140 atoms, 11290 bonds, 908 residues, 4 models selected
> select /A:1-433
14002 atoms, 14128 bonds, 866 residues, 2 models selected
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #1/B
Alignment identifier is 1/B
> color #1 #40d7a9 transparency 0
> color #1 #8ed6d7 transparency 0
> undo
> show #3 models
> hide #3 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> select add #1
17791 atoms, 17966 bonds, 1093 residues, 2 models selected
> select subtract #1
7001 atoms, 7064 bonds, 433 residues, 1 model selected
> select add #1
17791 atoms, 17966 bonds, 1093 residues, 2 models selected
> select subtract #1
7001 atoms, 7064 bonds, 433 residues, 1 model selected
> select /A:1-433
14002 atoms, 14128 bonds, 866 residues, 2 models selected
> color (#1 & sel) hot pink
> select /B:1-227
11140 atoms, 11290 bonds, 908 residues, 4 models selected
> select /B:1-227
11140 atoms, 11290 bonds, 908 residues, 4 models selected
> select add #1
18141 atoms, 18354 bonds, 1341 residues, 4 models selected
> select subtract #1
7351 atoms, 7452 bonds, 681 residues, 3 models selected
> select /A:1-433
14002 atoms, 14128 bonds, 866 residues, 2 models selected
> select /A:1-433
14002 atoms, 14128 bonds, 866 residues, 2 models selected
> select add #1
17791 atoms, 17966 bonds, 1093 residues, 2 models selected
> select add #2
21580 atoms, 21804 bonds, 1320 residues, 2 models selected
> select subtract #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #2
Nothing selected
> sequence chain #1/A
Alignment identifier is 1/A
> select
> #1/A:34-39,52-55,62-65,69-77,85-95,110-121,138-151,168-176,186-194,211-214,220-229,245-254,281-283,285-294,307-319,333-344,355-357,378-387,390-392,404-416,429-431
2930 atoms, 2937 bonds, 172 residues, 1 model selected
> select
> #1/A:100-103,131-134,159-162,181-184,205-209,235-240,259-262,272-278,299-303,324-327,350-353,366-371,395-401
1037 atoms, 1032 bonds, 64 residues, 1 model selected
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select /B:1-227
11140 atoms, 11290 bonds, 908 residues, 4 models selected
> sequence chain #1/B
Alignment identifier is 1/B
> hide #1 models
> show #1 models
> select add #1
18141 atoms, 18354 bonds, 1341 residues, 4 models selected
> select subtract #1
7351 atoms, 7452 bonds, 681 residues, 3 models selected
> select add #2
14352 atoms, 14516 bonds, 1114 residues, 3 models selected
> select subtract #2
3562 atoms, 3614 bonds, 454 residues, 2 models selected
> select add #2
14352 atoms, 14516 bonds, 1114 residues, 3 models selected
> select subtract #2
3562 atoms, 3614 bonds, 454 residues, 2 models selected
> sequence chain #1/A
Alignment identifier is 1/A
> select
> #1/A:34-39,52-55,62-65,69-77,85-95,110-121,138-151,168-176,186-194,211-214,220-229,245-254,281-283,285-294,307-319,333-344,355-357,378-387,390-392,404-416,429-431
2930 atoms, 2937 bonds, 172 residues, 1 model selected
> rainbow sel
> undo
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select /A:1-433
14002 atoms, 14128 bonds, 866 residues, 2 models selected
> rainbow sel & #1
> undo
> select add #1
17791 atoms, 17966 bonds, 1093 residues, 2 models selected
> select subtract #1
7001 atoms, 7064 bonds, 433 residues, 1 model selected
> sequence chain #1/B
Alignment identifier is 1/B
> close #1
> undo
Undo failed, probably because structures have been modified.
> open
> /Users/alexiavo/Downloads/DOZIPfIF4E_AF2_tempmode_none_eb419_relaxed_rank_1_model_1.pdb
Chain information for
DOZIPfIF4E_AF2_tempmode_none_eb419_relaxed_rank_1_model_1.pdb #1
---
Chain | Description
A | No description available
B | No description available
> select #1/A:1-433
7001 atoms, 7064 bonds, 433 residues, 1 model selected
> color sel hot pink
> select #1/B:1-227
3789 atoms, 3838 bonds, 227 residues, 1 model selected
> color sel cyan
> color sel light sea green
> sequence chain #1/B
Alignment identifier is 1/B
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/B:226-227
42 atoms, 42 bonds, 2 residues, 1 model selected
> select #1/B:1-227
3789 atoms, 3838 bonds, 227 residues, 1 model selected
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/A:1-433
7001 atoms, 7064 bonds, 433 residues, 1 model selected
> sequence chain #1/A
Alignment identifier is 1/A
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/A:1
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #1/A:1-270
4336 atoms, 4370 bonds, 270 residues, 1 model selected
> select #1/A:1-2
30 atoms, 29 bonds, 2 residues, 1 model selected
> select #1/A:1-260
4166 atoms, 4200 bonds, 260 residues, 1 model selected
> select #1/A:1
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #1/A:1-264
4235 atoms, 4269 bonds, 264 residues, 1 model selected
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> color sel orange
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> color sel #ff7499ff
> color sel #ff7597ff
> color sel #ff7791ff
> color sel #ff778eff
> color sel #ff778cff
> color sel #ff778bff
> color sel #ff778aff
> color sel #ff788aff
> color sel #ff7376ff
> color sel #ff766eff
> color sel #ff766cff
> color sel #ff6f6aff
> color sel #ff6267ff
> color sel #ff546bff
> color sel #ff4b6dff
> color sel #ff476eff
> color sel #ff486eff
> color sel #ff5466ff
> color sel #ff9050ff
> color sel #ffa441ff
> color sel #ffa93dff
> color sel #ffa93cff
> color sel #ffa734ff
> color sel #ffa325ff
> color sel #ff9f1bff
> color sel #ffa01cff
> color sel #ffa621ff
> color sel #ffab27ff
> color sel #ffad2aff
> color sel #ffad2bff
> color sel #ffac2bff
> color sel #ffa92cff
> color sel #ffa52cff
> color sel #ff9d2cff
> color sel #ff972cff
> color sel #ff8d2dff
> color sel #ff862eff
> color sel #ff802fff
> color sel #ff7a30ff
> color sel #ff7631ff
> color sel #ff7530ff
> color sel #ff7430ff
> color sel #ff7330ff
> color sel #ff7130ff
> color sel #ff6c30ff
> color sel #ff6930ff
> color sel #ff6830ff
> color sel #ff672fff
> color sel #ff642fff
> color sel #ff602eff
> color sel #ff5a2cff
> color sel #ff562bff
> color sel #ff512aff
> color sel #ff4f2aff
> color sel #ff4e2aff
> color sel #ff4f2bff
> color sel #ff5932ff
> color sel #ff7140ff
> color sel #ffaa63ff
> color sel #ffd97bff
> color sel #ffeb82ff
> color sel #fdff85ff
> color sel #f6ff85ff
> color sel #eeff84ff
> color sel #edff84ff
> color sel #ecff84ff
> color sel #eaff85ff
> color sel #e2ff88ff
> color sel #d9ff8aff
> color sel #d5ff91ff
> color sel #d1ff98ff
> color sel #d0ff9bff
> color sel #d2ff9eff
> color sel #d3ffa1ff
> color sel #d5ffa6ff
> color sel #d7ffb5ff
> color sel #d9ffc7ff
> color sel #dbffd0ff
> color sel #ddffd4ff
> color sel #deffd7ff
> color sel #deffd9ff
> color sel #dfffdcff
> color sel #ebfff0ff
> color sel #effbffff
> color sel #ecf5ffff
> color sel #edf6ffff
> color sel #eef9ffff
> color sel #f1fbffff
> color sel #f3fcffff
> color sel #f7fdffff
> color sel #fcfdffff
> color sel #fff7f9ff
> color sel #ffecedff
> color sel #ffe7e9ff
> color sel #ffe7e8ff
> color sel #ffe6e8ff
> color sel #ffe1e2ff
> color sel #ffccd2ff
> color sel #ffbdc9ff
> color sel #ffbbc8ff
> color sel #ffbaceff
> color sel #ffb6d6ff
> color sel #ffb7e2ff
> color sel #ffbbf6ff
> color sel #f7b6ffff
> color sel #e9aaffff
> color sel #d594ffff
> color sel #cd89ffff
> color sel #cc87ffff
> color sel #cb87ffff
> color sel #c981ffff
> color sel #c172ffff
> color sel #bc69ffff
> color sel #bb66ffff
> color sel #bb65ffff
> color sel #bc66ffff
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/A:1
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #1/A:1-433
7001 atoms, 7064 bonds, 433 residues, 1 model selected
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/A:391
21 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/A:391-396
90 atoms, 91 bonds, 6 residues, 1 model selected
> select #1/A:392
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/A:392-393
24 atoms, 24 bonds, 2 residues, 1 model selected
> select #1/A:391
21 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/A:391-396
90 atoms, 91 bonds, 6 residues, 1 model selected
> color sel yellow
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/A:65
21 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/A:65-72
159 atoms, 160 bonds, 8 residues, 1 model selected
> color sel yellow
> select
> #1/A:34-39,52-55,62-65,69-77,85-95,110-121,138-151,168-176,186-194,211-214,220-229,245-254,281-283,285-294,307-319,333-344,355-357,378-387,390-392,404-416,429-431
2930 atoms, 2937 bonds, 172 residues, 1 model selected
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/A:391-392
28 atoms, 28 bonds, 2 residues, 1 model selected
> select #1/A:391-397
100 atoms, 101 bonds, 7 residues, 1 model selected
> color sel yellow
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> sequence chain #1/B
Alignment identifier is 1/B
> select #1/B:54
21 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/B:54-61
147 atoms, 149 bonds, 8 residues, 1 model selected
> sequence chain #1/A
Alignment identifier is 1/A
> select #1/A:433
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #1/A:1-433
7001 atoms, 7064 bonds, 433 residues, 1 model selected
> select #1/A:433
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #1/A:1-433
7001 atoms, 7064 bonds, 433 residues, 1 model selected
> select #1/A:433
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #1/A:1-433
7001 atoms, 7064 bonds, 433 residues, 1 model selected
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/B:61
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #1/B:54-61
147 atoms, 149 bonds, 8 residues, 1 model selected
> select #1/B:37-44,58-64,89-92,98-108,124-130,162-170,178-185,218-223
1078 atoms, 1086 bonds, 60 residues, 1 model selected
> select #1/B:54
21 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/B:54-61
147 atoms, 149 bonds, 8 residues, 1 model selected
> select #1/B:54
21 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/B:54-61
147 atoms, 149 bonds, 8 residues, 1 model selected
> select #1/B:54-55
43 atoms, 43 bonds, 2 residues, 1 model selected
> select #1/B:54-61
147 atoms, 149 bonds, 8 residues, 1 model selected
> select #1/B:54
21 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/B:54-61
147 atoms, 149 bonds, 8 residues, 1 model selected
> select #1/B:54-55
43 atoms, 43 bonds, 2 residues, 1 model selected
> select #1/B:54-62
157 atoms, 159 bonds, 9 residues, 1 model selected
> color sel yellow
> select #1/B:196-197
40 atoms, 40 bonds, 2 residues, 1 model selected
> select #1/B:196-201
117 atoms, 117 bonds, 6 residues, 1 model selected
> select add #1
10790 atoms, 10902 bonds, 660 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/B:1
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #1/B:1-18
301 atoms, 302 bonds, 18 residues, 1 model selected
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-18.5.8
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 8 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1731.100.130.0.0 (iBridge: 19.16.14243.0.0,0)
OS Loader Version: 540.100.7~23
Software:
System Software Overview:
System Version: macOS 12.3.1 (21E258)
Kernel Version: Darwin 21.4.0
Time since boot: 4 days 1:21
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 12.3.1, Intel Iris Plus Graphics |
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Intel Mac graphics driver crash.