Crash in event loop

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error

Current thread 0x0000000200cea600 (most recent call first):
  File "/private/var/folders/5s/0wgsddw10t10g6vjw9d132dr0000gn/T/AppTranslocation/62D2F67E-B0F4-4533-8564-9F5EBDB7A349/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
  File "/private/var/folders/5s/0wgsddw10t10g6vjw9d132dr0000gn/T/AppTranslocation/62D2F67E-B0F4-4533-8564-9F5EBDB7A349/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
  File "/private/var/folders/5s/0wgsddw10t10g6vjw9d132dr0000gn/T/AppTranslocation/62D2F67E-B0F4-4533-8564-9F5EBDB7A349/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in 
  File "/private/var/folders/5s/0wgsddw10t10g6vjw9d132dr0000gn/T/AppTranslocation/62D2F67E-B0F4-4533-8564-9F5EBDB7A349/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/private/var/folders/5s/0wgsddw10t10g6vjw9d132dr0000gn/T/AppTranslocation/62D2F67E-B0F4-4533-8564-9F5EBDB7A349/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


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{
  "uptime" : 41000,
  "procLaunch" : "2022-07-16 11:18:20.6654 -0400",
  "procRole" : "Background",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro18,3",
  "procStartAbsTime" : 943900455349,
  "coalitionID" : 5389,
  "osVersion" : {
    "train" : "macOS 12.4",
    "build" : "21F79",
    "releaseType" : "User"
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  "captureTime" : "2022-07-16 11:49:08.1358 -0400",
  "incident" : "02D56D63-62DE-4FA9-84D0-D6143D2BAA4D",
  "bug_type" : "309",
  "pid" : 18414,
  "procExitAbsTime" : 988240189977,
  "translated" : true,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/private\/var\/folders\/*\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "2B3C145E-5D0C-B93A-49F0-AE0B1A61EF3F",
  "wakeTime" : 2748,
  "sleepWakeUUID" : "398F911E-C369-45F7-A9B4-D6E71D6E9174",
  "sip" : "enabled",
  "vmRegionInfo" : "0x12f2be6b1 is in 0x12f246000-0x12f2e6000;  bytes after start: 493233  bytes before end: 162126\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      CG image                    12f243000-12f246000    [   12K] rw-\/rwx SM=PRV  \n--->  mapped file                 12f246000-12f2e6000    [  640K] r-x\/rwx SM=COW  ...ct_id=ad9f361\n      mapped file                 12f2e6000-12f2f6000    [   64K] rw-\/rwx SM=COW  ...ct_id=b5f3861",
  "isCorpse" : 1,
  "exception" : {"codes":"0x000000000000000a, 0x000000012f2be6b1","rawCodes":[10,5086373553],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_MEMORY_ERROR at 0x000000012f2be6b1"},
  "ktriageinfo" : "VM - Object is not alive\n",
  "vmregioninfo" : "0x12f2be6b1 is in 0x12f246000-0x12f2e6000;  bytes after start: 493233  bytes before end: 162126\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      CG image                    12f243000-12f246000    [   12K] rw-\/rwx SM=PRV  \n--->  mapped file                 12f246000-12f2e6000    [  640K] r-x\/rwx SM=COW  ...ct_id=ad9f361\n      mapped file                 12f2e6000-12f2f6000    [   64K] rw-\/rwx SM=COW  ...ct_id=b5f3861",
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  "faultingThread" : 0,
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    "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    "name" : "libsystem_pthread.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703255703552,
    "size" : 561152,
    "uuid" : "d9ba0660-744d-3f84-9f80-afb51d450512",
    "path" : "\/usr\/lib\/system\/libsystem_c.dylib",
    "name" : "libsystem_c.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703257047040,
    "size" : 40960,
    "uuid" : "f6cad74b-ec4d-3ff9-80f3-b066753f9fab",
    "path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
    "name" : "libsystem_platform.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703257264128,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.CoreFoundation",
    "size" : 5246976,
    "uuid" : "9c8908f2-e5e0-35b7-9f41-fdf8d7476d8b",
    "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
    "name" : "CoreFoundation",
    "CFBundleVersion" : "1863"
  },
  {
    "source" : "P",
    "arch" : "arm64",
    "base" : 140703124824064,
    "size" : 196608,
    "uuid" : "0ee8ce32-639c-316a-9551-dab9a2e0c8a5",
    "path" : "\/usr\/libexec\/rosetta\/runtime",
    "name" : "runtime"
  }
],
  "sharedCache" : {
  "base" : 140703253692416,
  "size" : 15220686848,
  "uuid" : "53b6853f-0bc3-33f5-be72-1aca3a188ff8"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=205.8M resident=0K(0%) swapped_out_or_unallocated=205.8M(100%)\nWritable regions: Total=2.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.6G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               384K        3 \nActivity Tracing                   256K        1 \nCG backing stores                 3520K        4 \nCG image                           288K       30 \nColorSync                          236K       27 \nCoreAnimation                      148K       11 \nCoreGraphics                        12K        2 \nCoreUI image data                 3096K       28 \nFoundation                          36K        2 \nKernel Alloc Once                    8K        1 \nMALLOC                           682.3M      155 \nMALLOC guard page                  192K        8 \nMALLOC_MEDIUM (reserved)         920.0M       10         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)\nMach message                        16K        4 \nOpenGL GLSL                        384K        4 \nRosetta Arena                     4096K        2 \nRosetta Generic                   1472K      365 \nRosetta IndirectBranch            2048K        1 \nRosetta JIT                      128.0M        1 \nRosetta Return Stack               740K       74 \nRosetta Thread Context             740K       74 \nSTACK GUARD                         40K       10 \nStack                            146.1M       37 \nStack Guard                       56.1M       27 \nVM_ALLOCATE                      115.0M      234 \nVM_ALLOCATE (reserved)           224.1M       14         reserved VM address space (unallocated)\n__DATA                             355K       45 \n__DATA_CONST                      3033K       40 \n__DATA_DIRTY                        79K       24 \n__LINKEDIT                       192.9M        7 \n__OBJC_RO                         82.7M        1 \n__OBJC_RW                         3200K        2 \n__TEXT                            13.0M       50 \n__UNICODE                          592K        1 \ndyld private memory               1184K        3 \nmapped file                        6.7G      998 \nshared memory                     5356K       39 \nunshared pmap                     12.6M        9 \n===========                     =======  ======= \nTOTAL                              9.6G     2349 \nTOTAL, minus reserved VM space     8.1G     2349 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "61301e3a61217b3110231469",
      "factorPackIds" : {
        "SIRI_FIND_MY_CONFIGURATION_FILES" : "6216ae152a40e71046e16225"
      },
      "deploymentId" : 240000016
    },
    {
      "rolloutId" : "60186475825c62000ccf5450",
      "factorPackIds" : {
        "SIRI_VALUE_INFERENCE_CONTACT_RESOLUTION" : "62bdc4218fe09c1632d841e9"
      },
      "deploymentId" : 240000023
    }
  ],
  "experiments" : [

  ]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Volumes/H/CSHL/LAb/Projects/Oct11/Oct11_Articles&PDB/Trials/cryosparc_P193_J99_class_00_00164_volume_sharp.mrc

Opened cryosparc_P193_J99_class_00_00164_volume_sharp.mrc as #1, grid size
128,128,128, pixel 1.61, shown at level 0.0734, step 1, values float32  

> volume #1 level 0.1952

> volume #1 step 2

> volume #1 level 0.1863

> volume #1 step 1

> volume #1 level 0.2214

> volume #1 level 0.207

> volume #1 level 0.2548

> volume #1 level 0.1736

> volume #1 step 2

> volume #1 step 4

> volume #1 step 8

> volume #1 step 2

> volume #1 level 0.1654

> volume #1 step 1

> volume #1 level 0.2339

> volume #1 level 0.2116

> volume #1 level 0.1781

> volume #1 level 0.1287

> volume #1 level 0.1574

> volume #1 level 0.1893

> open /Volumes/H/CSHL/LAb/Projects/Oct11/Oct11_Articles&PDB/Trials/1cqt.pdb

1cqt.pdb title:  
Crystal structure of A ternary complex containing an oca-B peptide, the oct-1
pou domain, and an octamer element [more info...]  
  
Chain information for 1cqt.pdb #2  
---  
Chain | Description | UniProt  
A | pou domain, class 2, transcription factor 1 | PO2F1_HUMAN  
B | pou domain, class 2, transcription factor 1 | PO2F1_HUMAN  
I | pou domain, class 2, associating factor 1 | OBF1_HUMAN  
J | pou domain, class 2, associating factor 1 | OBF1_HUMAN  
M | DNA (5'- D(*TP*GP*TP*ap*TP*GP*CP*ap*ap*ap*TP*ap*ap*GP*G)-3') |  
N | DNA (5'- D(*ap*CP*CP*TP*TP*ap*TP*TP*TP*GP*CP*ap*TP*ap*C)-3') |  
O | DNA (5'- D(*TP*GP*TP*ap*TP*GP*CP*ap*ap*ap*TP*ap*ap*GP*G)-3') |  
P | DNA (5'- D(*ap*CP*CP*TP*TP*ap*TP*TP*TP*GP*CP*ap*TP*ap*C)-3') |  
  
Drag select of 3649 atoms, 4 pseudobonds  

> hide sel atoms

> show sel cartoons

> select clear

Drag select of 186 residues, 1 pseudobonds  

> delete atoms (#!2 & sel)

> delete bonds (#!2 & sel)

> ui mousemode right "translate selected models"

Drag select of 180 residues, 3 pseudobonds  

> view matrix models #2,1,0,0,47.089,0,1,0,81.326,0,0,1,79.861

> transparency (#!2 & sel) 40

Drag select of 1 cryosparc_P193_J99_class_00_00164_volume_sharp.mrc  

> transparency #1.1 50

> view matrix models #1,1,0,0,1.3805,0,1,0,-1.3463,0,0,1,-3.4924

Drag select of 8 residues  

> select up

394 atoms, 398 bonds, 47 residues, 1 model selected  

> select up

752 atoms, 760 bonds, 94 residues, 1 model selected  

> select up

862 atoms, 869 bonds, 109 residues, 1 model selected  

> select up

1042 atoms, 1052 bonds, 129 residues, 1 model selected  

> select up

1800 atoms, 1880 bonds, 180 residues, 1 model selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.98634,0.14862,-0.071067,46.455,-0.15117,0.98799,-0.031918,93.113,0.06547,0.042225,0.99696,74.335

> view matrix models
> #2,0.62627,-0.4241,0.65416,72.325,-0.76377,-0.16554,0.62389,149.15,-0.1563,-0.89036,-0.42759,129.19

> view matrix models
> #2,0.57256,-0.40545,0.71259,75.038,-0.81209,-0.16111,0.56085,153.57,-0.11259,-0.89981,-0.4215,126.07

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.57256,-0.40545,0.71259,59.577,-0.81209,-0.16111,0.56085,154.98,-0.11259,-0.89981,-0.4215,129.79

> transparency sel 20

> ui tool show "Fit in Map"

> fitmap #2 inMap #1

Fit molecule 1cqt.pdb (#2) to map
cryosparc_P193_J99_class_00_00164_volume_sharp.mrc (#1) using 1800 atoms  
average map value = 0.2167, steps = 88  
shifted from previous position = 6.73  
rotated from previous position = 30.6 degrees  
atoms outside contour = 816, contour level = 0.18926  
  
Position of 1cqt.pdb (#2) relative to
cryosparc_P193_J99_class_00_00164_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.38574486 -0.03886861 0.92178638 60.32293393  
-0.86308378 -0.36825484 0.34565121 162.23192744  
0.32601732 -0.92891205 -0.17559928 94.10421844  
Axis -0.78166372 0.36537305 -0.50547440  
Axis point 0.00000000 120.37667342 -30.30908185  
Rotation angle (degrees) 125.38407791  
Shift along axis -35.44434788  
  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,3
      Processor Name: Unknown
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 10
      L2 Cache: 20 MB
      Memory: 16 GB

Software:

    System Software Overview:

      System Version: macOS 12.4 (21F79)
      Kernel Version: Darwin 21.5.0
      Time since boot: 1 day 12:56

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 16
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.0
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0