Opened 3 years ago

Closed 3 years ago

#7287 closed defect (fixed)

KeyError deleting 2D arrow

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Depiction Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by Eric Pettersen)

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open
> /Users/jaletts/Documents/Drosophila/complexI/3DVA/Conformational_states_3DVA_PDaligned_boxed_split.cxs

Opened Closed_Refine_71_box.ccp4 1 as #2.2, grid size 149,217,338, pixel 0.88,
shown at level 0.55, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 2 as #2.3, grid size 149,217,338, pixel 0.88,
shown at level 0.55, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 3 as #2.4, grid size 149,217,338, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 4 as #2.5, grid size 149,217,338, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 5 as #2.6, grid size 149,217,338, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 6 as #2.7, grid size 149,217,338, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 7 as #2.8, grid size 149,217,338, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 8 as #2.9, grid size 149,217,338, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 9 as #2.10, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 10 as #2.11, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 11 as #2.12, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 12 as #2.13, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 13 as #2.14, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 14 as #2.15, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 15 as #2.16, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 16 as #2.17, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 17 as #2.18, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 18 as #2.19, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 19 as #2.20, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 20 as #2.21, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 21 as #2.22, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 22 as #2.23, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 23 as #2.24, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 24 as #2.25, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 25 as #2.26, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 26 as #2.27, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 27 as #2.28, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 28 as #2.29, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 29 as #2.30, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 30 as #2.31, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 31 as #2.32, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 32 as #2.33, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 33 as #2.34, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 34 as #2.35, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 35 as #2.36, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 36 as #2.37, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 37 as #2.38, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Closed_Refine_71_box.ccp4 38 as #2.39, grid size 149,217,338, pixel
0.88, shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 1 as #1.2, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 2 as #1.3, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 3 as #1.4, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 4 as #1.5, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 5 as #1.6, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 6 as #1.7, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 7 as #1.8, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 8 as #1.9, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 9 as #1.10, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 10 as #1.11, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 11 as #1.12, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 12 as #1.13, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 13 as #1.14, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 14 as #1.15, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 15 as #1.16, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 16 as #1.17, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 17 as #1.18, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 18 as #1.19, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 19 as #1.20, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 20 as #1.21, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 21 as #1.22, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 22 as #1.23, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 23 as #1.24, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 24 as #1.25, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 25 as #1.26, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 26 as #1.27, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 27 as #1.28, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 28 as #1.29, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 29 as #1.30, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 30 as #1.31, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 31 as #1.32, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 32 as #1.33, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 33 as #1.34, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 34 as #1.35, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 35 as #1.36, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 36 as #1.37, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 37 as #1.38, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened Open_Refine73_box.ccp4 38 as #1.39, grid size 147,212,341, pixel 0.88,
shown at level 0.5, step 1, values float32  
Opened frame_000_box.ccp4 1 as #5.2, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 2 as #5.3, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 3 as #5.4, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 4 as #5.5, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 5 as #5.6, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 6 as #5.7, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 7 as #5.8, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 8 as #5.9, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 9 as #5.10, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 10 as #5.11, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 11 as #5.12, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 12 as #5.13, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 13 as #5.14, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 14 as #5.15, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 15 as #5.16, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 16 as #5.17, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 17 as #5.18, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 18 as #5.19, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 19 as #5.20, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 20 as #5.21, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 21 as #5.22, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 22 as #5.23, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 23 as #5.24, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 24 as #5.25, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 25 as #5.26, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 26 as #5.27, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 27 as #5.28, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 28 as #5.29, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 29 as #5.30, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 30 as #5.31, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 31 as #5.32, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 32 as #5.33, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 33 as #5.34, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 34 as #5.35, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 35 as #5.36, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 36 as #5.37, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 37 as #5.38, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_000_box.ccp4 38 as #5.39, grid size 75,107,172, pixel 1.76, shown
at level 1.76, step 1, values float32  
Opened frame_001_box.ccp4 1 as #6.2, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 2 as #6.3, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 3 as #6.4, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 4 as #6.5, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 5 as #6.6, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 6 as #6.7, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 7 as #6.8, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 8 as #6.9, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 9 as #6.10, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 10 as #6.11, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 11 as #6.12, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 12 as #6.13, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 13 as #6.14, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 14 as #6.15, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 15 as #6.16, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 16 as #6.17, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 17 as #6.18, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 18 as #6.19, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 19 as #6.20, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 20 as #6.21, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 21 as #6.22, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 22 as #6.23, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 23 as #6.24, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 24 as #6.25, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 25 as #6.26, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 26 as #6.27, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 27 as #6.28, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 28 as #6.29, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 29 as #6.30, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 30 as #6.31, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 31 as #6.32, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 32 as #6.33, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 33 as #6.34, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 34 as #6.35, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 35 as #6.36, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 36 as #6.37, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 37 as #6.38, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_001_box.ccp4 38 as #6.39, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 1 as #7.2, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 2 as #7.3, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 3 as #7.4, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 4 as #7.5, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 5 as #7.6, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 6 as #7.7, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 7 as #7.8, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 8 as #7.9, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 9 as #7.10, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 10 as #7.11, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 11 as #7.12, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 12 as #7.13, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 13 as #7.14, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 14 as #7.15, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 15 as #7.16, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 16 as #7.17, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 17 as #7.18, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 18 as #7.19, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 19 as #7.20, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 20 as #7.21, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 21 as #7.22, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 22 as #7.23, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 23 as #7.24, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 24 as #7.25, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 25 as #7.26, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 26 as #7.27, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 27 as #7.28, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 28 as #7.29, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 29 as #7.30, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 30 as #7.31, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 31 as #7.32, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 32 as #7.33, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 33 as #7.34, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 34 as #7.35, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 35 as #7.36, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 36 as #7.37, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 37 as #7.38, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_002_box.ccp4 38 as #7.39, grid size 75,107,172, pixel 1.76, shown
at level 1.75, step 1, values float32  
Opened frame_003_box.ccp4 1 as #8.2, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 2 as #8.3, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 3 as #8.4, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 4 as #8.5, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 5 as #8.6, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 6 as #8.7, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 7 as #8.8, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 8 as #8.9, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 9 as #8.10, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 10 as #8.11, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 11 as #8.12, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 12 as #8.13, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 13 as #8.14, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 14 as #8.15, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 15 as #8.16, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 16 as #8.17, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 17 as #8.18, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 18 as #8.19, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 19 as #8.20, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 20 as #8.21, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 21 as #8.22, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 22 as #8.23, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 23 as #8.24, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 24 as #8.25, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 25 as #8.26, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 26 as #8.27, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 27 as #8.28, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 28 as #8.29, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 29 as #8.30, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 30 as #8.31, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 31 as #8.32, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 32 as #8.33, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 33 as #8.34, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 34 as #8.35, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 35 as #8.36, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 36 as #8.37, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 37 as #8.38, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_003_box.ccp4 38 as #8.39, grid size 75,107,172, pixel 1.76, shown
at level 1.74, step 1, values float32  
Opened frame_004_box.ccp4 1 as #9.2, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 2 as #9.3, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 3 as #9.4, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 4 as #9.5, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 5 as #9.6, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 6 as #9.7, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 7 as #9.8, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 8 as #9.9, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 9 as #9.10, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 10 as #9.11, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 11 as #9.12, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 12 as #9.13, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 13 as #9.14, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 14 as #9.15, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 15 as #9.16, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 16 as #9.17, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 17 as #9.18, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 18 as #9.19, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 19 as #9.20, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 20 as #9.21, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 21 as #9.22, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 22 as #9.23, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 23 as #9.24, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 24 as #9.25, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 25 as #9.26, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 26 as #9.27, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 27 as #9.28, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 28 as #9.29, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 29 as #9.30, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  
Opened frame_004_box.ccp4 30 as #9.31, grid size 75,107,172, pixel 1.76, shown
at level 1.73, step 1, values float32  

[lots of non-2dlabel commands deleted]

> hide #16

> show #17

> wait 1

> hide #17

> show #18

> wait 1

> hide #18

> show #19

> wait 1

> hide #19

> show #20

> wait 1

> hide #20

> show #21

> wait 1

> hide #21

> show #22

> wait 1

> hide #22

> show #23

> wait 1

> hide #23

> show #24

> wait 1

> hide #24

> show #25

> wait 1

> hide #25

> show #26

> wait 1

> hide #26

> show #27

> wait 1

> hide #27

> show #28

> wait 1

> hide #28

> show #29

> wait 1

> hide #29

> show #30

> wait 1

> hide #30

> show #31

> wait 1

> hide #31

> show #32

> wait 1

> hide #32

> show #33

> wait 1

> hide #33

> show #34

> wait 1

> hide #34

> show #35

> wait 1

> hide #35

> show #36

> wait 1

> hide #36

> show #37

> wait 1

> hide #37

> show #38

> wait 1

> hide #38

> show #39

> wait 1

> hide #39

> show #40

> wait 1

> hide #40

> show #41

> wait 1

> hide #41

> show #42

> wait 1

> hide #42

> show #43

> wait 1

> hide #43

> show #44

> wait 1

> hide #44

> show #45

> wait 1

> hide #45

> show #46

> wait 1

> hide #46

> show #47

> wait 1

> hide #47

> show #48

> wait 1

> hide #48

> show #49

> wait 1

> hide #49

> show #50

> wait 1

> hide #50

> show #51

> wait 1

> hide #51

> show #52

> wait 1

> hide #52

> show #53

> wait 1

> hide #53

> show #54

> wait 1

> 2dlabels text "Closed State" color #003399 size 42 xpos .60 ypos .900 font
> arial

> wait 20

> 2dlabels delete

> hide #54

> show #53

> wait 1

> hide #53

> show #52

> wait 1

> hide #52

> show #51

> wait 1

> hide #51

> show #50

> wait 1

> hide #50

> show #49

> wait 1

> hide #49

> show #48

> wait 1

> hide #48

> show #47

> wait 1

> hide #47

> show #46

> wait 1

> hide #46

> show #45

> wait 1

> hide #45

> show #44

> wait 1

> hide #44

> show #43

> wait 1

> hide #43

> show #42

> wait 1

> hide #42

> show #41

> wait 1

> hide #41

> show #40

> wait 1

> hide #40

> show #39

> wait 1

> hide #39

> show #38

> wait 1

> hide #38

> show #37

> wait 1

> hide #37

> show #36

> wait 1

> hide #36

> show #35

> wait 1

> hide #35

> show #34

> wait 1

> hide #34

> show #33

> wait 1

> hide #33

> show #32

> wait 1

> hide #32

> show #31

> wait 1

> hide #31

> show #30

> wait 1

> hide #30

> show #29

> wait 1

> hide #29

> show #28

> wait 1

> hide #28

> show #27

> wait 1

> hide #27

> show #26

> wait 1

> hide #26

> show #25

> wait 1

> hide #25

> show #24

> wait 1

> hide #24

> show #23

> wait 1

> hide #23

> show #22

> wait 1

> hide #22

> show #21

> wait 1

> hide #21

> show #20

> wait 1

> hide #20

> show #19

> wait 1

> hide #19

> show #18

> wait 1

> hide #18

> show #17

> wait 1

> hide #17

> show #16

> wait 1

> hide #16

> show #15

> wait 1

> hide #15

> show #14

> wait 1

> hide #14

> show #13

> wait 1

> hide #13

> show #12

> wait 1

> hide #12

> show #11

> wait 1

> hide #11

> show #10

> wait 1

> hide #10

> show #9

> wait 1

> hide #9

> show #8

> wait 1

> hide #8

> show #7

> wait 1

> hide #7

> show #6

> wait 1

> hide #6

> show #5

> wait 1

> 2dlabels text "Obstructed Open State" color #003399 size 42 xpos .60 ypos
> .900 font arial

> wait 20

> 2dlabels delete

> hide #5

> show #6

> wait 1

> hide #6

> show #7

> wait 1

> hide #7

> show #8

> wait 1

> hide #8

> show #9

> wait 1

> hide #9

> show #10

> wait 1

> hide #10

> show #11

> wait 1

> hide #11

> show #12

> wait 1

> hide #12

> show #13

> wait 1

> hide #13

> show #14

> wait 1

> hide #14

> show #15

> wait 1

> hide #15

> show #16

> wait 1

> hide #16

> show #17

> wait 1

> hide #17

> show #18

> wait 1

> hide #18

> show #19

> wait 1

> hide #19

> show #20

> wait 1

> hide #20

> show #21

> wait 1

> hide #21

> show #22

> wait 1

> hide #22

> show #23

> wait 1

> hide #23

> show #24

> wait 1

> hide #24

> show #25

> wait 1

> hide #25

> show #26

> wait 1

> hide #26

> show #27

> wait 1

> hide #27

> show #28

> wait 1

> hide #28

> show #29

> wait 1

> hide #29

> show #30

> wait 1

> hide #30

> show #31

> wait 1

> hide #31

> show #32

> wait 1

> hide #32

> show #33

> wait 1

> hide #33

> show #34

> wait 1

> hide #34

> show #35

> wait 1

> hide #35

> show #36

> wait 1

> hide #36

> show #37

> wait 1

> hide #37

> show #38

> wait 1

> hide #38

> show #39

> wait 1

> hide #39

> show #40

> wait 1

> hide #40

> show #41

> wait 1

> hide #41

> show #42

> wait 1

> hide #42

> show #43

> wait 1

> hide #43

> show #44

> wait 1

> hide #44

> show #45

> wait 1

> hide #45

> show #46

> wait 1

> hide #46

> show #47

> wait 1

> hide #47

> show #48

> wait 1

> hide #48

> show #49

> wait 1

> hide #49

> show #50

> wait 1

> hide #50

> show #51

> wait 1

> hide #51

> show #52

> wait 1

> hide #52

> show #53

> wait 1

> hide #53

> show #54

> 2dlabels text "Closed State" color #003399 size 42 xpos .60 ypos .900 font
> arial

> wait 20

> 2dlabels delete

> wait 1

> hide #54

> show #53

> wait 1

> hide #53

> show #52

> wait 1

> hide #52

> show #51

> wait 1

> hide #51

> show #50

> wait 1

> hide #50

> show #49

> wait 1

> hide #49

> show #48

> wait 1

> hide #48

> show #47

> wait 1

> hide #47

> show #46

> wait 1

> hide #46

> show #45

> wait 1

> hide #45

> show #44

> wait 1

> hide #44

> show #43

> wait 1

> hide #43

> show #42

> wait 1

> hide #42

> show #41

> wait 1

> hide #41

> show #40

> wait 1

> hide #40

> show #39

> wait 1

> hide #39

> show #38

> wait 1

> hide #38

> show #37

> wait 1

> hide #37

> show #36

> wait 1

> hide #36

> show #35

> wait 1

> hide #35

> show #34

> wait 1

> hide #34

> show #33

> wait 1

> hide #33

> show #32

> wait 1

> hide #32

> show #31

> wait 1

> hide #31

> show #30

> wait 1

> hide #30

> show #29

> wait 1

> hide #29

> show #28

> wait 1

> hide #28

> show #27

> wait 1

> hide #27

> show #26

> wait 1

> hide #26

> show #25

> wait 1

> hide #25

> show #24

> wait 1

> hide #24

> show #23

> wait 1

> hide #23

> show #22

> wait 1

> hide #22

> show #21

> wait 1

> hide #21

> show #20

> wait 1

> hide #20

> show #19

> wait 1

> hide #19

> show #18

> wait 1

> hide #18

> show #17

> wait 1

> hide #17

> show #16

> wait 1

> hide #16

> show #15

> wait 1

> hide #15

> show #14

> wait 1

> hide #14

> show #13

> wait 1

> hide #13

> show #12

> wait 1

> hide #12

> show #11

> wait 1

> hide #11

> show #10

> wait 1

> hide #10

> show #9

> wait 1

> hide #9

> show #8

> wait 1

> hide #8

> show #7

> wait 1

> hide #7

> show #6

> wait 1

> hide #6

> show #5

> wait 1

> 2dlabels text "Obstructed Open State" color #003399 size 42 xpos .60 ypos
> .900 font arial

> wait 2

> fly 50 p1 p2

> wait 50

> clip near -140 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -138 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -136 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -134 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -132 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -130 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -128 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -126 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -124 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -122 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -120 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -118 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -116 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -114 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -112 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -110 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -108 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -106 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -104 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -102 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -100 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -98 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -96 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -94 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -92 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -90 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -88 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -86 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -84 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -82 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -80 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -78 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -76 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -74 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -72 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -70 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -68 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -66 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -64 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -62 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -60 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -58 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -56 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -54 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -52 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -50 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -48 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -46 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -44 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -42 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -40 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -38 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -36 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -34 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -32 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -30 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -28 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -26 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 1

> clip near -24 position 221.6,235.9,225.9 axis 0.005,0.873,-0.487

> wait 5

> 2dlabels text NDUFS7 color #CAE0AB size 32 xpos .215 ypos .69 font arial

> 2dlabels text NDUFS2 color #F6C141 size 32 xpos .209 ypos .38 font arial

> 2dlabels text NDUFA9 color #6F4C9B size 32 xpos .4 ypos .89 font arial

> 2dlabels text NDUFA12 color #D1B541 size 32 xpos .147 ypos .55 font arial

> 2dlabels text "ND3 TMH1-2 loop" color black size 24 xpos .50 ypos .750 font
> arial

> 2dlabels arrow start .51,.74 end .43,.6 color black weight 0.25 headStyle
> solid

> 2dlabels text "NDUFA9 "latched"" color black size 24 xpos .52 ypos .70 font
> arial

> 2dlabels arrow start .53,.69 end .495,.635 color black weight 0.25 headStyle
> solid

> 2dlabels text Q-site color black size 24 xpos .20 ypos .48 font arial

> 2dlabels arrow start .24,.49 end .345,.51 color black weight 0.25 headStyle
> solid

> 2dlabels text ⭕ size 64 xpos .35 ypos .476 font arial

> 2dlabels delete

Traceback (most recent call last):  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/dialog.py", line 162, in _qt_safe  
run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + (""  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 118, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 193, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 440, in collated_open  
return remember_data_format()  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 428, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core_formats/__init__.py", line 37, in open  
return open_command_script(session, data, file_name, **kw)  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/scripting.py", line 160, in open_command_script  
_run_commands(session, commands, directory = dirname(path), log = log)  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/scripting.py", line 173, in _run_commands  
run(session, cmd, log=log)  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/label/label2d.py", line 280, in label_delete  
l.delete()  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/label/arrows.py", line 414, in delete  
lm.delete_arrow(self)  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/label/arrows.py", line 312, in delete_arrow  
del self._named_arrows[arrow.name]  
KeyError: 'arrow 1'  
  

Populating font family aliases took 401 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.  

KeyError: 'arrow 1'  
  
File
"/opt/sbgrid/i386-mac/chimerax/1.4/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/label/arrows.py", line 312, in delete_arrow  
del self._named_arrows[arrow.name]  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 ATI-4.8.54
OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,1
      Processor Name: 6-Core Intel Core i9
      Processor Speed: 2.9 GHz
      Number of Processors: 1
      Total Number of Cores: 6
      L2 Cache (per Core): 256 KB
      L3 Cache: 12 MB
      Hyper-Threading Technology: Enabled
      Memory: 32 GB
      System Firmware Version: 1731.120.10.0.0 (iBridge: 19.16.15071.0.0,0)
      OS Loader Version: 540.120.3~6

Software:

    System Software Overview:

      System Version: macOS 12.4 (21F79)
      Kernel Version: Darwin 21.5.0
      Time since boot: 34 days 20:30

Graphics/Displays:

    Intel UHD Graphics 630:

      Chipset Model: Intel UHD Graphics 630
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3e9b
      Revision ID: 0x0000
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Family: Supported, Metal GPUFamily macOS 2

    Radeon Pro 560X:

      Chipset Model: Radeon Pro 560X
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x8
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x67ef
      Revision ID: 0x00c2
      ROM Revision: 113-C980AL-075
      VBIOS Version: 113-C97501U-005
      EFI Driver Version: 01.A1.075
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2880 x 1800 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        HP VH240a:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: 6CM94409F7  
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Connection Type: DVI or HDMI
          Adapter Firmware Version: 7.55
        LG UltraFine:
          Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
          UI Looks like: 2560 x 1440
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: 807NTJJDU436
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: Yes
          Connection Type: Thunderbolt/DisplayPort


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.0
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Component: UnassignedDepiction
Description: modified (diff)
Owner: set to Eric Pettersen
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionKeyError deleting 2D arrow

comment:2 by Eric Pettersen, 3 years ago

Resolution: fixed
Status: acceptedclosed
Note: See TracTickets for help on using tickets.