MemoryError saving session

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19043
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open C:\\\Users\\\g_gua\\\Desktop\\\segmented_map.cxs

Opened job018_run_class001.mrc as #1, grid size 560,560,560, pixel 0.673,
shown at level 0.009, step 1, values float32  
Log from Wed Jul 13 17:50:42 2022UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open C:\\\Users\\\g_gua\\\Desktop\\\segmented_map.cxs

Opened job018_run_class001.mrc as #1, grid size 560,560,560, pixel 0.673,
shown at level 0.009, step 1, values float32  
Log from Wed Jul 13 00:13:53 2022UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open C:\\\Users\\\g_gua\\\Desktop\\\segmented_map.cxs

Opened job018_run_class001.mrc as #1, grid size 560,560,560, pixel 0.673,
shown at level 0.009, step 1, values float32  
Log from Tue Jul 12 16:54:23 2022 Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> ui mousemode right zoom

> open C:/Users/g_gua/Downloads/job018_run_class001.mrc

Opened job018_run_class001.mrc as #1, grid size 560,560,560, pixel 0.673,
shown at level 0.0073, step 4, values float32  

> volume #1 step 1

> volume #1 level 0.01

> set bgColor white

> lighting soft

> lighting simple

> graphics silhouettes true

> ui tool show "Segment Map"

Segmenting job018_run_class001.mrc, density threshold 0.010000  
Only showing 60 of 769 regions.  
Showing 60 of 769 region surfaces  
6296 watershed regions, grouped to 769 regions  
Showing job018_run_class001.seg - 769 regions, 60 surfaces  
Segmenting job018_run_class001.mrc, density threshold 0.010000  
Only showing 60 of 66 regions.  
Showing 60 of 66 region surfaces  
6296 watershed regions, grouped to 66 regions  
Showing job018_run_class001.seg - 66 regions, 60 surfaces  
Segmenting job018_run_class001.mrc, density threshold 0.010000  
Only showing 60 of 142 regions.  
Showing 60 of 142 region surfaces  
6296 watershed regions, grouped to 142 regions  
Showing job018_run_class001.seg - 142 regions, 60 surfaces  
Segmenting job018_run_class001.mrc, density threshold 0.010000  
Only showing 60 of 169 regions.  
Showing 60 of 169 region surfaces  
6296 watershed regions, grouped to 169 regions  
Showing job018_run_class001.seg - 169 regions, 60 surfaces  
Segmenting job018_run_class001.mrc, density threshold 0.010000  
Only showing 60 of 142 regions.  
Showing 60 of 142 region surfaces  
6296 watershed regions, grouped to 142 regions  
Showing job018_run_class001.seg - 142 regions, 60 surfaces  

> ui mousemode right "move picked models"

> view matrix models #2.16,1,0,0,-32.077,0,1,0,-14.932,0,0,1,0.78944

> view matrix models #2.16,1,0,0,-76.684,0,1,0,-7.8204,0,0,1,3.3982

> view matrix models #2.16,1,0,0,-99.202,0,1,0,12.026,0,0,1,-15.484

> undo

[Repeated 2 time(s)]

> ui mousemode right "translate selected models"

> select clear

> color #2.8 red

> lighting flat

[Repeated 1 time(s)]

> lighting soft

> lighting simple

> ui tool show "Color Actions"

> color sel orange red

> ui tool show "Color Actions"

> color sel crimson

> color sel light salmon

> color sel crimson

> select clear

[Repeated 2 time(s)]Grouped 2 regions  

> ui tool show "Color Actions"

> color sel gold

> color sel lime green

> select clear

> ui tool show "Color Actions"

> color sel medium sea green

> color sel sea green

> select clear

> color #2.18 cornflower blue

> select clear

> color #2.10,29-30 light gray

[Repeated 1 time(s)]

> color #2.10,29-30 dim gray

> select clear

[Repeated 1 time(s)]

> color #2.43-56 magenta

> select clear

> view matrix models
> #2.5,1,0,0,-5.9664,0,1,0,12.856,0,0,1,2.932,#2.34,1,0,0,-5.9664,0,1,0,12.856,0,0,1,2.932

> undo

> ui mousemode right translate

Grouped 2 regions  

> select clear

Grouped 2 regions  

> ui tool show "Color Actions"

> color sel light green

> select clear

> color #2.4,35 cyan

> select clear

> ui tool show "Color Actions"

> color sel medium orchid

> select clear

> ui mousemode right clip

[Repeated 1 time(s)]

> ui mousemode right translate

> view

> turn

[Repeated 6 time(s)]

> ui tool show "Side View"

> turn

[Repeated 8 time(s)]

> save C:/Users/g_gua/Desktop/PilQ_gate_top.tif width 944 height 604
> supersample 4

> lighting soft

> lighting simple

> graphics silhouettes false

> graphics silhouettes true

> save C:/Users/g_gua/Desktop/PilQ_gate_top.tif width 944 height 604
> supersample 4

> turn

[Repeated 1 time(s)]

> save C:/Users/g_gua/Desktop/PilQ_gate_bottom.tif width 944 height 604
> supersample 4

> save C:/Users/g_gua/Desktop/nonprotein_densities.tif width 944 height 604
> supersample 3

> hide #!2 models

> volume #1 level 0.0073

> volume #1 level 0.008

> volume #1 level 0.009

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> save C:/Users/g_gua/Desktop/segmented_map.cxs

——— End of log from Tue Jul 12 16:54:23 2022 ———

opened ChimeraX session  
Showing job018_run_class001.seg - 139 regions, 57 surfaces  
Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 6 regions  
Ungrouped to 12 regions  
Ungrouped to 24 regions  
Grouped 23 regions  

> select clear

Grouped 3 regions  

> color #2.26 black

> color #2.26 gray

No visible atoms or bonds selected  

> ui tool show "Color Actions"

> color sel dark slate gray

> color sel dim gray

Ungrouped to 3 regions  
Ungrouped to 6 regions  
Ungrouped to 10 regions  
Ungrouped to 14 regions  
Ungrouped to 24 regions  
Ungrouped to 46 regions  

> undo

Grouped 45 regions  

> color #2.29 gray

> color #2.29 dim gray

Grouped 4 regions  

> color #2.26 dim gray

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 8 regions  
Ungrouped to 12 regions  
Ungrouped to 20 regions  
Ungrouped to 38 regions  
Grouped 37 regions  

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 8 regions  
Ungrouped to 14 regions  
Ungrouped to 26 regions  
Ungrouped to 38 regions  
Grouped 37 regions  

> ui tool show "Color Actions"

> color sel dark khaki

> color sel light green

> select clear

> color sel dark gray

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 8 regions  
Ungrouped to 16 regions  
Ungrouped to 32 regions  
Ungrouped to 58 regions  
Grouped 56 regions  

> select clear

Grouped 2 regions  
Grouped 3 regions  

> ui tool show "Color Actions"

> color sel medium aquamarine

> select clear

Ungrouped to 3 regions  
Grouped 2 regions  

> ui tool show "Color Actions"

> color sel yellow green

> color sel lime green

> color sel medium aquamarine

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 8 regions  
Ungrouped to 16 regions  
Ungrouped to 32 regions  
Grouped 31 regions  

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 6 regions  
Ungrouped to 12 regions  
Ungrouped to 20 regions  
Ungrouped to 38 regions  
Ungrouped to 74 regions  
Grouped 73 regions  

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 8 regions  
Ungrouped to 14 regions  
Ungrouped to 28 regions  
Grouped 27 regions  

> color #2.51 orange

> select clear

[Repeated 1 time(s)]Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 8 regions  
Ungrouped to 16 regions  
Ungrouped to 30 regions  
Grouped 29 regions  

> select clear

> color #2.18-22,57,78,81,85,110,124,127,129,169 hot pink

> select clear

Grouped 2 regions  
[Repeated 1 time(s)]

> select clear

Grouped 2 regions  

> color #2.51 orange

> select clear

[Repeated 1 time(s)]Grouped 2 regions  

> select clear

Grouped 2 regions  

> color #2.26 dim gray

> select clear

Grouped 2 regions  

> select clear

> turn

[Repeated 1 time(s)]

> select clear

Grouped 2 regions  

> color #2.27 cyan

> select clear

Grouped 2 regions  

> color #2.26 dim gray

> select clear

> save C:/Users/g_gua/Desktop/segmented_map.cxs

Ungrouped to 56 regions  
Grouped 56 regions  
Ungrouped to 56 regions  
Grouped 56 regions  
Ungrouped to 56 regions  
Grouped 45 regions  

> ui tool show "Color Actions"

> color #2.46 light sea green

> color #2.46 cornflower blue

> select clear

> ui tool show "Side View"

> select clear

Ungrouped to 45 regions  
Grouped 44 regions  

> color #2.46 cornflower blue

Grouped 2 regions  

> color #2.46 cornflower blue

> select clear

Grouped 9 regions  
Grouped 2 regions  

> ui tool show "Color Actions"

> color sel medium spring green

Grouped 5 regions  

> ui tool show "Color Actions"

> color sel medium spring green

> select clear

Ungrouped to 2 regions  
Grouped 1 regions  

> undo

Grouped 1 regions  
[Repeated 4 time(s)]Grouped 2 regions  

> color #2.46 cornflower blue

> select clear

[Repeated 1 time(s)]Grouped 2 regions  

> color #2.46 cornflower blue

> select clear

[Repeated 1 time(s)]Grouped 2 regions  

> color #2.26 dim gray

> select clear

Grouped 2 regions  

> select clear

Ungrouped to 2 regions  
Ungrouped to 23 regions  
Ungrouped to 44 regions  
Grouped 44 regions  

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 6 regions  
Ungrouped to 12 regions  
Grouped 10 regions  

> color #2.37 light gray

> select clear

Ungrouped to 10 regions  
Grouped 9 regions  

> select clear

Grouped 4 regions  
Grouped 2 regions  

> select clear

Ungrouped to 9 regions  
Grouped 8 regions  

> select clear

Grouped 2 regions  

> select clear

Ungrouped to 2 regions  
[Repeated 1 time(s)]Grouped 1 regions  

> set bgColor black

> set bgColor white

Ungrouped to 1 regions  
Ungrouped to 2 regions  
Grouped 1 regions  

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Grouped 3 regions  

> select clear

Grouped 3 regions  

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Grouped 2 regions  
Grouped 1 regions  

> select clear

Grouped 3 regions  

> select clear

[Repeated 1 time(s)]Ungrouped to 2 regions  
Ungrouped to 4 regions  
Grouped 3 regions  
Grouped 4 regions  

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 8 regions  
Ungrouped to 16 regions  
Grouped 15 regions  

> select clear

Grouped 2 regions  

> select clear

Grouped 2 regions  

> color #2.47 orange red

> select clear

Grouped 2 regions  

> color #2.46 cornflower blue

> select clear

Grouped 2 regions  

> color #2.26 dim gray

> select clear

Ungrouped to 3 regions  
Ungrouped to 7 regions  
Ungrouped to 15 regions  
Ungrouped to 24 regions  
Ungrouped to 30 regions  
Grouped 30 regions  
Ungrouped to 30 regions  
Ungrouped to 26 regions  
Grouped 26 regions  
Grouped 1 regions  
[Repeated 4 time(s)]

> undo

[Repeated 3 time(s)]

> select clear

Grouped 15 regions  
Grouped 11 regions  
Grouped 4 regions  
Grouped 2 regions  

> select clear

[Repeated 2 time(s)]Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 11 regions  
Ungrouped to 15 regions  
Ungrouped to 1 regions  

> undo

[Repeated 3 time(s)]Grouped 1 regions  
Ungrouped to 1 regions  

> undo

> select clear

> undo

[Repeated 7 time(s)]

> select clear

Ungrouped to 1 regions  
[Repeated 2 time(s)]

> select clear

Ungrouped to 1 regions  
Ungrouped to 26 regions  
Ungrouped to 40 regions  
Grouped 40 regions  
Ungrouped to 40 regions  

> select clear

Grouped 9 regions  

> ui tool show "Color Actions"

> color sel pale violet red

Grouped 3 regions  
Grouped 13 regions  
Grouped 2 regions  

> select clear

Grouped 2 regions  

> select clear

Grouped 29 regions  
Grouped 8 regions  
Grouped 6 regions  
Grouped 5 regions  
Grouped 3 regions  
Grouped 2 regions  

> select clear

Grouped 2 regions  

> select clear

Grouped 8 regions  

> ui tool show "Color Actions"

> color sel gold

> color sel pale goldenrod

> color sel khaki

> color sel moccasin

> color sel navajo white

> color sel peach puff

[Repeated 1 time(s)]

> color sel antique white

> color sel wheat

> color sel khaki

> color sel tan

> select clear

[Repeated 1 time(s)]Ungrouped to 4 regions  
Grouped 3 regions  

> select clear

Grouped 2 regions  

> select clear

Grouped 2 regions  

> ui tool show "Color Actions"

> color sel coral

> color sel dark salmon

> color sel salmon

> color sel orange red

> color sel peru

> select clear

Grouped 2 regions  

> color #2.47 orange red

> select clear

Drag select of 9988, 3238 of 3428 triangles, 10074, 10075, 10076, 3208 of 3464
triangles, 10141, 10142, 3236 of 3500 triangles, 10210, 3461 of 3504
triangles, 10211, 3323 of 3436 triangles, 10255, 10256, 3364 of 3424
triangles, 10295, 3333 of 3464 triangles, 10324, 3176 of 3428 triangles,
10346, 10391, 10393, 10402, 10403, 10408, 11255, 12320, 8739 of 45184
triangles, 12421, 8234 of 98216 triangles, 12427, 19564 of 232820 triangles,
12431, 18048 of 179984 triangles, 10407, 10394, 10405, 10395, 12461, 10404,
10401, 10392, 10383, 12467, 27776 of 275140 triangles, 12474, 24895 of 275016
triangles, 12493, 21483 of 277188 triangles, 6086, 12511, 28447 of 275924
triangles, 12513, 23343 of 280700 triangles, 12514, 21595 of 276020 triangles,
12532, 21811 of 275928 triangles, 12539, 23806 of 276540 triangles, 12540,
22059 of 271496 triangles, 12542, 25106 of 273276 triangles, 12543, 26759 of
275180 triangles, 12544, 27549 of 277648 triangles  

> select clear

> ui tool show "Color Actions"

> color sel deep pink

> select clear

> graphics silhouettes false

> graphics silhouettes true

Grouped 2 regions  

> color #2.39 light gray

> select clear

Grouped 2 regions  

> color #2.42 medium blue

> ui tool show "Color Actions"

> color sel steel blue

> select clear

[Repeated 1 time(s)]Grouped 2 regions  

> select clear

Grouped 3 regions  

> ui tool show "Color Actions"

> color sel coral

> select clear

Grouped 2 regions  

> ui tool show "Color Actions"

> color sel lime

> color sel yellow green

> color sel green yellow

> color sel burly wood

> color sel violet

> select clear

> ui tool show "Color Actions"

> color sel medium sea green

> color sel antique white

> color sel lavender

> color sel light green

> color sel dark olive green

> select clear

Grouped 2 regions  

> select clear

> save C:/Users/g_gua/Desktop/segmented_map.cxs

——— End of log from Wed Jul 13 00:13:53 2022 ———

opened ChimeraX session  
Showing job018_run_class001.seg - 146 regions, 64 surfaces  
Grouped 2 regions  

> ui tool show "Color Actions"

> color sel medium orchid

> select clear

Grouped 2 regions  

> ui tool show "Color Actions"

> color sel forest green

> select clear

Grouped 2 regions  

> select clear

Grouped 2 regions  

> select clear

Grouped 2 regions  

> select clear

> ui tool show "Side View"

Grouped 2 regions  

> ui tool show "Color Actions"

> color sel coral

> select clear

[Repeated 1 time(s)]Ungrouped to 2 regions  
[Repeated 2 time(s)]Grouped 1 regions  

> undo

Grouped 2 regions  

> color #2.45 cornflower blue

Grouped 2 regions  

> color #2.45 cornflower blue

> select clear

Ungrouped to 2 regions  
[Repeated 1 time(s)]Ungrouped to 45 regions  
Grouped 44 regions  

> color #2.45 cornflower blue

> select clear

Grouped 2 regions  

> ui tool show "Color Actions"

> color sel gold

> color sel orange

> color sel goldenrod

> select clear

Grouped 2 regions  

> color #2.45 cornflower blue

> select clear

Grouped 2 regions  

> color #2.43 cornflower blue

> select clear

Grouped 2 regions  

> ui tool show "Color Actions"

> color sel tomato

> select clear

Grouped 2 regions  

> select clear

Grouped 2 regions  

> select clear

Grouped 3 regions  

> select clear

> show #!1 models

> hide #!1 models

> save C:/Users/g_gua/Desktop/segmented_map.cxs

Drag select of 12467, 37039 of 275140 triangles, 12474, 39456 of 275016
triangles, 12511, 32283 of 275924 triangles, 12514, 38260 of 276020 triangles,
12539, 26582 of 276540 triangles, 12543, 22604 of 275180 triangles, 12544,
26943 of 277648 triangles, 12551, 38267 of 276772 triangles, 12552, 35719 of
276736 triangles, 12555, 33039 of 276544 triangles, 12561, 40654 of 271884
triangles, 12563, 40071 of 280084 triangles, 12566, 40031 of 278032 triangles,
12567, 22430 of 276060 triangles  

> select clear

Grouped 2 regions  

> select clear

Drag select of 12474, 10296 of 275016 triangles, 12511, 3866 of 275924
triangles, 12514, 6318 of 276020 triangles, 12539, 2838 of 276540 triangles,
12543, 1973 of 275180 triangles, 12544, 2378 of 277648 triangles, 12551, 8991
of 276772 triangles, 12552, 5542 of 276736 triangles, 12555, 4394 of 276544
triangles, 12561, 9625 of 271884 triangles, 12563, 10266 of 280084 triangles,
12566, 8002 of 278032 triangles, 12567, 1857 of 276060 triangles, 12568, 7481
of 275448 triangles  

> select clear

Grouped 2 regions  

> select clear

Drag select of 12474, 3651 of 275016 triangles, 12511, 2413 of 275924
triangles, 12514, 14925 of 276020 triangles, 12539, 13873 of 276540 triangles,
12543, 7615 of 275180 triangles, 12544, 4664 of 277648 triangles, 12551, 1766
of 276772 triangles, 12552, 1171 of 276736 triangles, 12555, 15390 of 276544
triangles, 12561, 9129 of 271884 triangles, 12563, 6145 of 280084 triangles,
12566, 12126 of 278032 triangles, 12568, 1222 of 275448 triangles, 12569,
10626 of 276376 triangles  

> select clear

Grouped 2 regions  

> select clear

Drag select of 12474, 15703 of 275016 triangles, 12511, 5366 of 275924
triangles, 12514, 15554 of 276020 triangles, 12539, 8638 of 276540 triangles,
12543, 5182 of 275180 triangles, 12544, 4710 of 277648 triangles, 12551, 12093
of 276772 triangles, 12552, 6726 of 276736 triangles, 12555, 11692 of 276544
triangles, 12561, 18964 of 271884 triangles, 12563, 17966 of 280084 triangles,
12566, 17890 of 278032 triangles, 12568, 9189 of 275448 triangles, 12570, 6406
of 276728 triangles  

> select clear

Grouped 2 regions  

> select clear

Drag select of 12428, 6461 of 187680 triangles, 12474, 111571 of 275016
triangles, 12511, 113103 of 275924 triangles, 12514, 112709 of 276020
triangles, 12539, 114352 of 276540 triangles, 12543, 113297 of 275180
triangles, 12544, 113920 of 277648 triangles, 12545, 6805 of 187684 triangles,
12546, 5723 of 187988 triangles, 12547, 5160 of 187480 triangles, 12549, 5754
of 187588 triangles, 12550, 6255 of 186640 triangles, 12551, 111521 of 276772
triangles, 12552, 111637 of 276736 triangles, 12555, 112809 of 276544
triangles, 12561, 108955 of 271884 triangles, 12563, 114121 of 280084
triangles, 12564, 5022 of 186632 triangles, 12568, 111666 of 275448 triangles,
12570, 112820 of 276728 triangles, 12571, 112861 of 278492 triangles  

> select clear

> save C:/Users/g_gua/Desktop/segmented_map.cxs

——— End of log from Wed Jul 13 17:50:42 2022 ———

opened ChimeraX session  
Showing job018_run_class001.seg - 131 regions, 49 surfaces  
Drag select of 12474, 44019 of 275016 triangles, 12511, 48520 of 275924
triangles, 12514, 42858 of 276020 triangles, 12539, 44122 of 276540 triangles,
12543, 46471 of 275180 triangles, 12544, 48032 of 277648 triangles, 12551,
44975 of 276772 triangles, 12552, 47758 of 276736 triangles, 12555, 43254 of
276544 triangles, 12561, 42943 of 271884 triangles, 12563, 42822 of 280084
triangles, 12568, 46500 of 275448 triangles, 12570, 45424 of 276728 triangles,
12571, 42547 of 278492 triangles  

> color #2.30-35,41-45,47-49 light gray

> transparency #2.30-35,41-45,47-49 50

> select clear

> set bgColor black

> set bgColor transparent

> set bgColor black

> set bgColor white

> set bgColor #ffffff00

> color #2.39,46 gray

> color #2.28,36-40,46 gray

> transparency #2.28,36-40,46 50

> select clear

> lighting soft

> lighting simple

Drag select of 12428, 180447 of 187680 triangles, 12474, 195338 of 275016
triangles, 12511, 204975 of 275924 triangles, 12514, 202330 of 276020
triangles, 12539, 208940 of 276540 triangles, 12543, 208646 of 275180
triangles, 12544, 210443 of 277648 triangles, 12545, 186629 of 187684
triangles, 12546, 184339 of 187988 triangles, 12547, 171139 of 187480
triangles, 12549, 168206 of 187588 triangles, 12550, 186122 of 186640
triangles, 12551, 199744 of 276772 triangles, 12552, 204102 of 276736
triangles, 12555, 206885 of 276544 triangles, 12561, 193577 of 271884
triangles, 12563, 201157 of 280084 triangles, 12564, 160788 of 186632
triangles, 12568, 199304 of 275448 triangles, 12570, 210621 of 276728
triangles, 12571, 202451 of 278492 triangles  

> select ~sel

31 models selected  

> transparency #2.1-27,29#!2 50

> select clear

Drag select of 9988, 10074, 10075, 10076, 10141, 10142, 10210, 10211, 10255,
10256, 10295, 10324, 10346, 10383, 10391, 10392, 10393, 10394, 10395, 10401,
10402, 10403, 10404, 10405, 10407, 10408, 11255, 12428, 12461, 12474, 12511,
12514, 12539, 12543, 12544, 12545, 12546, 12547, 12549, 12550, 12551, 12552,
12555, 12561, 12563, 12564, 12568, 12570, 12571  

> transparency #2.1-49 70

> select clear

> transparency #2.43 0

> color #2.43 black

> color #2.43 gray

> select clear

> color #2.28,36-40,46 light sea green

> select clear

Drag select of 12474, 41613 of 275016 triangles, 12511, 45418 of 275924
triangles, 12514, 44298 of 276020 triangles, 12539, 48160 of 276540 triangles,
12543, 48143 of 275180 triangles, 12544, 47209 of 277648 triangles, 12551,
41782 of 276772 triangles, 12552, 43570 of 276736 triangles, 12555, 46344 of
276544 triangles, 12561, 42129 of 271884 triangles, 12563, 41233 of 280084
triangles, 12568, 42534 of 275448 triangles, 12570, 49097 of 276728 triangles,
12571, 42806 of 278492 triangles  

> ui tool show "Color Actions"

> color sel cornsilk

> color sel seashell

> color sel lavender blush

> color sel peach puff

Drag select of 9988, 10074, 10075, 10076, 10141, 10142, 10210, 10211, 10255,
10256, 10295, 10324, 10346, 10383, 10391, 10392, 10393, 10394, 10395, 10401,
10402, 10403, 10404, 10405, 10407, 10408, 11255, 12428, 12461, 12474, 12511,
12514, 12539, 12543, 12544, 12545, 12546, 12547, 12549, 12550, 12551, 12552,
12555, 12561, 12563, 12564, 12568, 12570, 12571  

> transparency #2.1-42,44-49 80

> select clear

> ui tool show "Side View"

> turn

[Repeated 7 time(s)]

> hide #!2 models

> hide #1.1 models

> show #!1 models

> show #1.1 models

> hide #1.1 models

> hide #!1 models

> show #!2 models

> save C:/Users/g_gua/Desktop/segmented_map_2.cxs

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 630, in save  
fserialize(stream, data)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\serialize.py", line 65, in msgpack_serialize  
stream.write(packer.pack(obj))  
File "msgpack\\_packer.pyx", line 294, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 300, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 297, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 231, in msgpack._cmsgpack.Packer._pack  
File "msgpack\\_packer.pyx", line 285, in msgpack._cmsgpack.Packer._pack  
File "stringsource", line 67, in
cfunc.to_py.__Pyx_CFunc_object____object___to_py.wrap  
File "_serialize.pyx", line 215, in chimerax.core._serialize._encode_ext  
File "msgpack\\_packer.pyx", line 294, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 304, in msgpack._cmsgpack.Packer.pack  
MemoryError  
  
MemoryError  
  
File "msgpack\\_packer.pyx", line 304, in msgpack._cmsgpack.Packer.pack  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 165, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 386, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1286, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\toolbar\\__init__.py", line 37, in run_provider  
providers.run_provider(session, name)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 45, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 27, in _file_save  
show_save_file_dialog(session)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 90, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 84, in save  
return cxs_save(session, path, **kw)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 630, in save  
fserialize(stream, data)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\serialize.py", line 65, in msgpack_serialize  
stream.write(packer.pack(obj))  
File "msgpack\\_packer.pyx", line 294, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 300, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 297, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 231, in msgpack._cmsgpack.Packer._pack  
File "msgpack\\_packer.pyx", line 285, in msgpack._cmsgpack.Packer._pack  
File "stringsource", line 67, in
cfunc.to_py.__Pyx_CFunc_object____object___to_py.wrap  
File "_serialize.pyx", line 215, in chimerax.core._serialize._encode_ext  
File "msgpack\\_packer.pyx", line 294, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 304, in msgpack._cmsgpack.Packer.pack  
MemoryError  
  
MemoryError  
  
File "msgpack\\_packer.pyx", line 304, in msgpack._cmsgpack.Packer.pack  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 10.18.10.4358
OpenGL renderer: Intel(R) HD Graphics 4000
OpenGL vendor: Intel

Python: 3.9.11
Locale: en_AU.cp1252
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: windows

Manufacturer: ASUSTeK COMPUTER INC.
Model: UX31A
OS: Microsoft Windows 10 Home (Build 19043)
Memory: 4,175,347,712
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i5-3317U CPU @ 1.70GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2022.5.18.1
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pywin32: 303
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0
    WMI: 1.5.1